Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185180 | XP_013444959.1 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185180 | sp|Q949M9|GET3A_ARATH | 82.808 | 349 | 60 | 0 | 6 | 354 | 5 | 353 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185180 | A0A072TNB3 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 727 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185180 | Msa1236390 | 0.801048 | 1.081856e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185180 | MtrunA17_Chr8g0350831 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 727 |
| Msa1185180 | MtrunA17_Chr1g0199481 | 32.508 | 323 | 177 | 11 | 21 | 308 | 82 | 398 | 2.39e-44 | 157 |
| Msa1185180 | MtrunA17_Chr4g0028631 | 30.503 | 318 | 183 | 8 | 21 | 307 | 62 | 372 | 1.98e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185180 | AT1G01910.1 | 82.808 | 349 | 60 | 0 | 6 | 354 | 5 | 353 | 0.0 | 581 |
| Msa1185180 | AT1G01910.4 | 82.808 | 349 | 60 | 0 | 6 | 354 | 5 | 353 | 0.0 | 581 |
| Msa1185180 | AT1G01910.2 | 82.808 | 349 | 60 | 0 | 6 | 354 | 5 | 353 | 0.0 | 581 |
| Msa1185180 | AT1G01910.3 | 86.486 | 296 | 40 | 0 | 6 | 301 | 5 | 300 | 0.0 | 518 |
| Msa1185180 | AT1G01910.5 | 80.973 | 226 | 43 | 0 | 129 | 354 | 24 | 249 | 1.05e-135 | 387 |
| Msa1185180 | AT3G10350.1 | 31.988 | 322 | 179 | 10 | 21 | 308 | 88 | 403 | 1.05e-44 | 159 |
| Msa1185180 | AT3G10350.2 | 32.602 | 319 | 172 | 10 | 21 | 308 | 119 | 425 | 4.81e-43 | 155 |
| Msa1185180 | AT5G60730.1 | 32.792 | 308 | 171 | 9 | 32 | 308 | 81 | 383 | 9.91e-34 | 129 |
Find 77 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCTTTGAAGAATAAATT+TGG | 0.178410 | 8_1:+21889200 | Msa1185180:CDS |
| ACCAACGAAAACCCACTTTA+AGG | 0.186644 | 8_1:-21886262 | None:intergenic |
| AAAACCCCTACTTTGGTTAA+TGG | 0.187000 | 8_1:+21886420 | Msa1185180:CDS |
| GTCATTACTGTATTCTCTTT+TGG | 0.213574 | 8_1:+21891275 | Msa1185180:three_prime_UTR |
| GAATTGGAGAGAGTCAAAAT+AGG | 0.234725 | 8_1:+21891212 | Msa1185180:CDS |
| TTTCAACTTTCCAAGTTAAA+AGG | 0.249024 | 8_1:+21891491 | Msa1185180:three_prime_UTR |
| GAAAATGCAGCAGAAGTATT+TGG | 0.259754 | 8_1:+21890306 | Msa1185180:CDS |
| ATGGGAATTGCAACAGTCTA+AGG | 0.268606 | 8_1:-21889148 | None:intergenic |
| TTAGGTTTGAGGTTTGAATT+TGG | 0.284562 | 8_1:-21886096 | None:intergenic |
| ACTTTAAGGTTTCTTGTTCT+AGG | 0.289287 | 8_1:-21886248 | None:intergenic |
| TGTCTTTGAAGAATAAATTT+GGG | 0.291371 | 8_1:+21889201 | Msa1185180:CDS |
| GGATTTAATATAAGAAGATT+TGG | 0.303790 | 8_1:+21886007 | Msa1185180:five_prime_UTR |
| AAAAGAGGCAGAAGAAGAAT+TGG | 0.308769 | 8_1:+21891196 | Msa1185180:CDS |
| GAGCTAGCCGGTGCAATTCC+TGG | 0.313841 | 8_1:+21887155 | Msa1185180:CDS |
| CATTCTAGCTTTAAGTAACT+TGG | 0.339195 | 8_1:-21890284 | None:intergenic |
| ACTCATAAACTGAAAGTTAC+AGG | 0.344709 | 8_1:-21891434 | None:intergenic |
| TGTAATGTTCCTTCTGGTAA+TGG | 0.356987 | 8_1:-21886219 | None:intergenic |
| TTCATAAAGCGAGAGGAATT+CGG | 0.357721 | 8_1:-21890086 | None:intergenic |
| TCATAAAGCGAGAGGAATTC+GGG | 0.385422 | 8_1:-21890085 | None:intergenic |
| CATCATACAACATGTAAAAC+TGG | 0.392796 | 8_1:-21890330 | None:intergenic |
| CTCATAGCCTCATCAATTCC+AGG | 0.396145 | 8_1:-21887173 | None:intergenic |
| AGTGCAAATTGACAGGTTAC+TGG | 0.397669 | 8_1:+21891059 | Msa1185180:intron |
| TTTGGCATGGGTGATGATTT+CGG | 0.397818 | 8_1:+21889755 | Msa1185180:CDS |
| TCACAGATGACTCGCATGTT+TGG | 0.400073 | 8_1:+21889737 | Msa1185180:intron |
| TACAGTTGAGCATGAAGATA+TGG | 0.411064 | 8_1:+21887100 | Msa1185180:CDS |
| TACTTGATCTCTACTGCATA+TGG | 0.414553 | 8_1:-21891132 | None:intergenic |
| AATTGGAGAGAGTCAAAATA+GGG | 0.415972 | 8_1:+21891213 | Msa1185180:CDS |
| GCTTTATGAAACAGAAAGAT+TGG | 0.417282 | 8_1:+21890099 | Msa1185180:CDS |
| TTCGGTGAAGATGCAATCCT+TGG | 0.419730 | 8_1:+21889773 | Msa1185180:CDS |
| GCAATCCTTGGGAAGCTAGA+AGG | 0.429425 | 8_1:+21889785 | Msa1185180:CDS |
| TAGAACAAGAAACCTTAAAG+TGG | 0.452112 | 8_1:+21886250 | Msa1185180:CDS |
| TTTCTCCAATCTCTATGCTA+TGG | 0.459395 | 8_1:+21886443 | Msa1185180:CDS |
| ACAAACCATAGCATAGAGAT+TGG | 0.462002 | 8_1:-21886448 | None:intergenic |
| CTTTCCAAGTTAAAAGGTAA+AGG | 0.476052 | 8_1:+21891497 | Msa1185180:three_prime_UTR |
| GAAGATATGGCTAGTTCTGA+TGG | 0.483680 | 8_1:+21887113 | Msa1185180:CDS |
| GAGAAACCATTAACCAAAGT+AGG | 0.484214 | 8_1:-21886426 | None:intergenic |
| AGAAACCATTAACCAAAGTA+GGG | 0.499369 | 8_1:-21886425 | None:intergenic |
| ACAAAACAACTTACCTCTTG+TGG | 0.500305 | 8_1:-21890382 | None:intergenic |
| CAACGTTGTTGCTATTGCTA+TGG | 0.502103 | 8_1:+21886188 | Msa1185180:exon |
| CAAGTTATCTTCGACGATGA+AGG | 0.511170 | 8_1:+21890172 | Msa1185180:CDS |
| GTAACTTTCAGTTTATGAGT+TGG | 0.512963 | 8_1:+21891437 | Msa1185180:three_prime_UTR |
| TCATTCCTTCTAGCTTCCCA+AGG | 0.518353 | 8_1:-21889790 | None:intergenic |
| GTATTTGATACTGCTCCCAC+TGG | 0.540064 | 8_1:+21889119 | Msa1185180:CDS |
| TCGGTGAAGATGCAATCCTT+GGG | 0.543736 | 8_1:+21889774 | Msa1185180:CDS |
| GTTGGTGGCAAAGGTGGTGT+TGG | 0.544218 | 8_1:+21886279 | Msa1185180:CDS |
| ATTGCAACAGTCTAAGGGTA+TGG | 0.549459 | 8_1:-21889142 | None:intergenic |
| TATGGCTAGTTCTGATGGGA+TGG | 0.552539 | 8_1:+21887118 | Msa1185180:CDS |
| TTTAGAAAAGGGTCTTGCAA+AGG | 0.554997 | 8_1:+21889175 | Msa1185180:CDS |
| TTTCAGATTGGTGCAGACAA+TGG | 0.557897 | 8_1:+21889082 | Msa1185180:intron |
| AGTCTAAGGGTATGGCCAGT+GGG | 0.561604 | 8_1:-21889134 | None:intergenic |
| TGGGAAGCTAGAAGGAATGA+AGG | 0.562365 | 8_1:+21889793 | Msa1185180:CDS |
| GCTGCCACTGCTTCCACAAG+AGG | 0.562957 | 8_1:+21890369 | Msa1185180:CDS |
| GTCTTTGAAGAATAAATTTG+GGG | 0.567862 | 8_1:+21889202 | Msa1185180:CDS |
| ATCAATTCCAGGAATTGCAC+CGG | 0.577923 | 8_1:-21887162 | None:intergenic |
| ATATCTTCATGCTCAACTGT+AGG | 0.583098 | 8_1:-21887098 | None:intergenic |
| GCTACAACACCAATTAAAAG+AGG | 0.585416 | 8_1:+21891181 | Msa1185180:CDS |
| AGAACAAGAAACCTTAAAGT+GGG | 0.586075 | 8_1:+21886251 | Msa1185180:CDS |
| GCATCGCTAAGATTATGAGC+AGG | 0.586661 | 8_1:-21886378 | None:intergenic |
| CAGTCTAAGGGTATGGCCAG+TGG | 0.587770 | 8_1:-21889135 | None:intergenic |
| TTTCTGTTTCATAAAGCGAG+AGG | 0.594935 | 8_1:-21890093 | None:intergenic |
| GATGACTCGCATGTTTGGCA+TGG | 0.600222 | 8_1:+21889742 | Msa1185180:intron |
| GCTAAGATTATGAGCAGGAT+CGG | 0.605307 | 8_1:-21886373 | None:intergenic |
| TGGGAATTGCAACAGTCTAA+GGG | 0.619370 | 8_1:-21889147 | None:intergenic |
| TGCAATTCCTGGAATTGATG+AGG | 0.621368 | 8_1:+21887166 | Msa1185180:CDS |
| AACTTGTTCAATGAGCTAGC+CGG | 0.626245 | 8_1:+21887143 | Msa1185180:CDS |
| GAAACCATTAACCAAAGTAG+GGG | 0.628988 | 8_1:-21886424 | None:intergenic |
| CTACTGCATATGGATTCATA+CGG | 0.629456 | 8_1:-21891122 | None:intergenic |
| CTTACCTCTTGTGGAAGCAG+TGG | 0.634536 | 8_1:-21890373 | None:intergenic |
| GCGGTTAGAGAATAGAGTAA+CGG | 0.642769 | 8_1:+21891157 | Msa1185180:CDS |
| GGGAATGCAAACACAGACAA+AGG | 0.643109 | 8_1:-21890065 | None:intergenic |
| ATGACTCGCATGTTTGGCAT+GGG | 0.644788 | 8_1:+21889743 | Msa1185180:CDS |
| GTTAAAAGGTAAAGGTGACA+TGG | 0.646767 | 8_1:+21891505 | Msa1185180:three_prime_UTR |
| AGTCAAAATAGGGAAGAACA+AGG | 0.648448 | 8_1:+21891223 | Msa1185180:CDS |
| AAGATATGGCTAGTTCTGAT+GGG | 0.649630 | 8_1:+21887114 | Msa1185180:CDS |
| GAAGATCAACCATTACCAGA+AGG | 0.651887 | 8_1:+21886210 | Msa1185180:CDS |
| TCTTTGAAGAATAAATTTGG+GGG | 0.677618 | 8_1:+21889203 | Msa1185180:CDS |
| GCAGTAGAGATCAAGTAGAG+CGG | 0.707129 | 8_1:+21891138 | Msa1185180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGAAAATTTCAAAAA+GGG | - | chr8_1:21886495-21886514 | None:intergenic | 10.0% |
| !! | AAAAATTGAAAATTTCAAAA+AGG | - | chr8_1:21886496-21886515 | None:intergenic | 10.0% |
| !! | TTCATAAAAACAAAATAAAA+GGG | - | chr8_1:21886739-21886758 | None:intergenic | 10.0% |
| !! | ATTCATAAAAACAAAATAAA+AGG | - | chr8_1:21886740-21886759 | None:intergenic | 10.0% |
| !! | AAAATTGAAAATTAACAAAA+GGG | - | chr8_1:21886861-21886880 | None:intergenic | 10.0% |
| !!! | TTTTGTTAATTTTCAATTTT+CGG | + | chr8_1:21886861-21886880 | Msa1185180:intron | 10.0% |
| !! | AAAAATTGAAATTGAAATAA+GGG | - | chr8_1:21886963-21886982 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTATTTTGTAAT+TGG | + | chr8_1:21889692-21889711 | Msa1185180:intron | 10.0% |
| !!! | ATTTTCAATACAATTAAAAG+TGG | - | chr8_1:21886076-21886095 | None:intergenic | 15.0% |
| !! | AAAATTGAAAATTGACAAAA+GGG | - | chr8_1:21886566-21886585 | None:intergenic | 15.0% |
| !! | AAAAATTGAAAATTGACAAA+AGG | - | chr8_1:21886567-21886586 | None:intergenic | 15.0% |
| !! | AGATTCATAAAATAACAAAA+GGG | - | chr8_1:21886637-21886656 | None:intergenic | 15.0% |
| !! | AAAATTGAAAATTGACAAAA+GGG | - | chr8_1:21886566-21886585 | None:intergenic | 15.0% |
| !! | TCATAAAAACAAAATAAAAG+GGG | - | chr8_1:21886738-21886757 | None:intergenic | 15.0% |
| !! | AAAATCAAAAATTGACAAAA+GGG | - | chr8_1:21886773-21886792 | None:intergenic | 15.0% |
| !! | AAAAATCAAAAATTGACAAA+AGG | - | chr8_1:21886774-21886793 | None:intergenic | 15.0% |
| !! | GAAAATTGAAAATTAACAAA+AGG | - | chr8_1:21886862-21886881 | None:intergenic | 15.0% |
| !! | AGATTCATAAAACAATAAAA+GGG | - | chr8_1:21886932-21886951 | None:intergenic | 15.0% |
| !! | CAAAAATTGAAATTGAAATA+AGG | - | chr8_1:21886964-21886983 | None:intergenic | 15.0% |
| !! | TTAACAAAATTTAACATTCT+TGG | - | chr8_1:21886991-21887010 | None:intergenic | 15.0% |
| !!! | ATGTTAAATTTTGTTAATTG+TGG | + | chr8_1:21886994-21887013 | Msa1185180:intron | 15.0% |
| !! | AAAAAAGAAAAAGAAAAACA+GGG | - | chr8_1:21888707-21888726 | None:intergenic | 15.0% |
| !! | AAAAAAAGAAAAAGAAAAAC+AGG | - | chr8_1:21888708-21888727 | None:intergenic | 15.0% |
| !! | AAAAACTAAAGTTTATTGAT+TGG | - | chr8_1:21889947-21889966 | None:intergenic | 15.0% |
| !! | TTTATGAATATACAAATCTA+AGG | - | chr8_1:21889992-21890011 | None:intergenic | 15.0% |
| !! | GAAAAATACAAACAATTATA+AGG | - | chr8_1:21890024-21890043 | None:intergenic | 15.0% |
| !! | AATGAGATCAATAAATTAAA+GGG | - | chr8_1:21890711-21890730 | None:intergenic | 15.0% |
| !! | TAATGAGATCAATAAATTAA+AGG | - | chr8_1:21890712-21890731 | None:intergenic | 15.0% |
| !! | AAAATTTCATGTTTATGTTA+TGG | + | chr8_1:21890944-21890963 | Msa1185180:intron | 15.0% |
| !!! | TTTTTTATCCTTTTACTTTT+TGG | - | chr8_1:21891374-21891393 | None:intergenic | 15.0% |
| !! | AAAAGGATAAAAAATTGTTT+AGG | + | chr8_1:21891380-21891399 | Msa1185180:three_prime_UTR | 15.0% |
| !! | AAAGGATAAAAAATTGTTTA+GGG | + | chr8_1:21891381-21891400 | Msa1185180:three_prime_UTR | 15.0% |
| !! | GGATTTAATATAAGAAGATT+TGG | + | chr8_1:21886007-21886026 | Msa1185180:five_prime_UTR | 20.0% |
| !!! | TGTGTTTGTTTTATTTGTTT+AGG | - | chr8_1:21886117-21886136 | None:intergenic | 20.0% |
| !! | AAATTGAAAATTGACAAAAG+GGG | - | chr8_1:21886565-21886584 | None:intergenic | 20.0% |
| !!! | TTAACAAAATTCAACAGTTT+TGG | - | chr8_1:21886595-21886614 | None:intergenic | 20.0% |
| !! | CAGATTCATAAAATAACAAA+AGG | - | chr8_1:21886638-21886657 | None:intergenic | 20.0% |
| !!! | TTATTTTATGAATCTGAGTA+TGG | + | chr8_1:21886642-21886661 | Msa1185180:intron | 20.0% |
| !! | GAAAATTGAAAATTGACAAA+AGG | - | chr8_1:21886669-21886688 | None:intergenic | 20.0% |
| !! | AAATCAAAAATTGACAAAAG+GGG | - | chr8_1:21886772-21886791 | None:intergenic | 20.0% |
| !! | GATTCATAAAAAATAGTGTA+AGG | - | chr8_1:21886829-21886848 | None:intergenic | 20.0% |
| !!! | CTGTTAAATTTTGTTTCTTT+TGG | + | chr8_1:21886893-21886912 | Msa1185180:intron | 20.0% |
| !! | GATTCATAAAACAATAAAAG+GGG | - | chr8_1:21886931-21886950 | None:intergenic | 20.0% |
| !! | CAGATTCATAAAACAATAAA+AGG | - | chr8_1:21886933-21886952 | None:intergenic | 20.0% |
| !! | AAACTAATTCAAAAATCAGA+AGG | - | chr8_1:21887273-21887292 | None:intergenic | 20.0% |
| !!! | GATTTTTGAATTAGTTTTTG+AGG | + | chr8_1:21887276-21887295 | Msa1185180:intron | 20.0% |
| !! | TGATATATGTTAGAACTTTA+TGG | + | chr8_1:21887659-21887678 | Msa1185180:intron | 20.0% |
| !! | TATTTCACACACAAAATAAT+AGG | + | chr8_1:21888267-21888286 | Msa1185180:intron | 20.0% |
| !! | ATTTCACACACAAAATAATA+GGG | + | chr8_1:21888268-21888287 | Msa1185180:intron | 20.0% |
| !! | TTGAAAAATTCTGTAGTATT+GGG | + | chr8_1:21888330-21888349 | Msa1185180:intron | 20.0% |
| !!! | CAATTTTTACTTATGCAATA+AGG | - | chr8_1:21888364-21888383 | None:intergenic | 20.0% |
| !! | AATTAGTAGTCAAGTTATAT+TGG | + | chr8_1:21888774-21888793 | Msa1185180:intron | 20.0% |
| !! | ATTAGTAGTCAAGTTATATT+GGG | + | chr8_1:21888775-21888794 | Msa1185180:intron | 20.0% |
| !!! | GTTAATTTTAGATTAGATAG+TGG | - | chr8_1:21889015-21889034 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTAACAACCAA+CGG | + | chr8_1:21889021-21889040 | Msa1185180:intron | 20.0% |
| !!! | CTTTTTTCTTTTTTTCAGAT+TGG | + | chr8_1:21889070-21889089 | Msa1185180:intron | 20.0% |
| !!! | ATGTCTTTGAAGAATAAATT+TGG | + | chr8_1:21889200-21889219 | Msa1185180:CDS | 20.0% |
| !!! | TGTCTTTGAAGAATAAATTT+GGG | + | chr8_1:21889201-21889220 | Msa1185180:CDS | 20.0% |
| !!! | CTATGAATAATCAATTGTTT+TGG | + | chr8_1:21889566-21889585 | Msa1185180:intron | 20.0% |
| !! | AAATTAGATGAAATTCTTAC+TGG | - | chr8_1:21889854-21889873 | None:intergenic | 20.0% |
| !!! | TATTGATTGGCAATAATATA+CGG | - | chr8_1:21889934-21889953 | None:intergenic | 20.0% |
| !! | TGTTATAAAAAAAATCCTTG+TGG | + | chr8_1:21890970-21890989 | Msa1185180:intron | 20.0% |
| !! | ATATACTCATATTGTTTCAA+TGG | - | chr8_1:21891009-21891028 | None:intergenic | 20.0% |
| !! | TATGTAAACCAAAAAGTAAA+AGG | + | chr8_1:21891363-21891382 | Msa1185180:three_prime_UTR | 20.0% |
| !! | TGTAATGTGTTTTCAGATTT+TGG | - | chr8_1:21886050-21886069 | None:intergenic | 25.0% |
| !!! | GTTTTATTTGTTTAGGTTTG+AGG | - | chr8_1:21886110-21886129 | None:intergenic | 25.0% |
| !! | GAAGCAAAATTTATCACTTT+TGG | - | chr8_1:21886697-21886716 | None:intergenic | 25.0% |
| !! | TGATAAATTTTGCTTCTTGT+GGG | + | chr8_1:21886701-21886720 | Msa1185180:intron | 25.0% |
| !!! | TTGTTTCTTTTGGTGAATTA+TGG | + | chr8_1:21886903-21886922 | Msa1185180:intron | 25.0% |
| !!! | AATAATTGAACCCCTTTTTT+GGG | + | chr8_1:21887019-21887038 | Msa1185180:intron | 25.0% |
| !!! | TGATTTAGAGTGAATCTTTT+GGG | + | chr8_1:21887333-21887352 | Msa1185180:intron | 25.0% |
| !!! | TTTTTCAAAAGTTCCGATAA+GGG | - | chr8_1:21887433-21887452 | None:intergenic | 25.0% |
| !!! | TTTTTTCAAAAGTTCCGATA+AGG | - | chr8_1:21887434-21887453 | None:intergenic | 25.0% |
| ! | AAATTGACTAACGAAAGATA+TGG | - | chr8_1:21887780-21887799 | None:intergenic | 25.0% |
| ! | CTTTATCTTTACTTTATCCT+AGG | + | chr8_1:21887927-21887946 | Msa1185180:intron | 25.0% |
| !!! | TTTATTTGTTGCTTGTTATG+TGG | + | chr8_1:21888040-21888059 | Msa1185180:intron | 25.0% |
| !! | TTAGATTAATCTTGAGGTTT+TGG | + | chr8_1:21888068-21888087 | Msa1185180:intron | 25.0% |
| ! | ATGATATTGATACTCATCAA+AGG | - | chr8_1:21888121-21888140 | None:intergenic | 25.0% |
| !! | CAAGAAAATTGATTTCTCTT+GGG | + | chr8_1:21888219-21888238 | Msa1185180:intron | 25.0% |
| !! | CAATACTACAGAATTTTTCA+AGG | - | chr8_1:21888331-21888350 | None:intergenic | 25.0% |
| ! | CTTGAAAAATTCTGTAGTAT+TGG | + | chr8_1:21888329-21888348 | Msa1185180:intron | 25.0% |
| ! | TTGAGTCAAAAAATATCAGA+AGG | - | chr8_1:21888756-21888775 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTCTTTGATCCAA+GGG | + | chr8_1:21888803-21888822 | Msa1185180:intron | 25.0% |
| !! | GTCTTTGAAGAATAAATTTG+GGG | + | chr8_1:21889202-21889221 | Msa1185180:CDS | 25.0% |
| !! | TCTTTGAAGAATAAATTTGG+GGG | + | chr8_1:21889203-21889222 | Msa1185180:CDS | 25.0% |
| ! | TAATACTAAATAGTGTAGTG+TGG | - | chr8_1:21889412-21889431 | None:intergenic | 25.0% |
| !!! | TTTTTTGTAGAAAACAATGC+CGG | - | chr8_1:21889509-21889528 | None:intergenic | 25.0% |
| ! | AATTATTCAGTGACATAACT+AGG | + | chr8_1:21889631-21889650 | Msa1185180:intron | 25.0% |
| ! | ATTATTCAGTGACATAACTA+GGG | + | chr8_1:21889632-21889651 | Msa1185180:intron | 25.0% |
| ! | TTCACGATATTGTATATGTT+TGG | + | chr8_1:21889669-21889688 | Msa1185180:intron | 25.0% |
| !! | ATTTCTGTTTTGTATTGTCT+TGG | + | chr8_1:21889870-21889889 | Msa1185180:intron | 25.0% |
| !! | TTGTATTTTTCTCTATTCAC+AGG | + | chr8_1:21890033-21890052 | Msa1185180:intron | 25.0% |
| ! | ATTAGCTGACAAAATCTATA+AGG | - | chr8_1:21890238-21890257 | None:intergenic | 25.0% |
| !!! | TACAAAGTTTTGTCAAATAG+AGG | + | chr8_1:21890496-21890515 | Msa1185180:intron | 25.0% |
| !!! | CAATATCATAGTGTTTTGAA+AGG | - | chr8_1:21890670-21890689 | None:intergenic | 25.0% |
| ! | CTTTCAAAACACTATGATAT+TGG | + | chr8_1:21890668-21890687 | Msa1185180:intron | 25.0% |
| ! | TATTGATCTCATTATCTTTG+TGG | + | chr8_1:21890718-21890737 | Msa1185180:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | chr8_1:21890859-21890878 | None:intergenic | 25.0% |
| !! | ATCATTCTCTTTTCTGTTTT+GGG | + | chr8_1:21891336-21891355 | Msa1185180:three_prime_UTR | 25.0% |
| ! | TTTCAACTTTCCAAGTTAAA+AGG | + | chr8_1:21891491-21891510 | Msa1185180:three_prime_UTR | 25.0% |
| ! | TTAGGTTTGAGGTTTGAATT+TGG | - | chr8_1:21886099-21886118 | None:intergenic | 30.0% |
| ! | ATGTTTTGTAATGTTCCTTC+TGG | - | chr8_1:21886228-21886247 | None:intergenic | 30.0% |
| !! | ACTTTAAGGTTTCTTGTTCT+AGG | - | chr8_1:21886251-21886270 | None:intergenic | 30.0% |
| TAGAACAAGAAACCTTAAAG+TGG | + | chr8_1:21886250-21886269 | Msa1185180:CDS | 30.0% | |
| AGAACAAGAAACCTTAAAGT+GGG | + | chr8_1:21886251-21886270 | Msa1185180:CDS | 30.0% | |
| AGAAACCATTAACCAAAGTA+GGG | - | chr8_1:21886428-21886447 | None:intergenic | 30.0% | |
| ! | GTGATAAATTTTGCTTCTTG+TGG | + | chr8_1:21886700-21886719 | Msa1185180:intron | 30.0% |
| ! | GATAAATTTTGCTTCTTGTG+GGG | + | chr8_1:21886702-21886721 | Msa1185180:intron | 30.0% |
| !!! | GAATAATTGAACCCCTTTTT+TGG | + | chr8_1:21887018-21887037 | Msa1185180:intron | 30.0% |
| !!! | ATAATTGAACCCCTTTTTTG+GGG | + | chr8_1:21887020-21887039 | Msa1185180:intron | 30.0% |
| !! | CTGATTTAGAGTGAATCTTT+TGG | + | chr8_1:21887332-21887351 | Msa1185180:intron | 30.0% |
| ! | CAGTGATTTGAGTTAAAGAT+AGG | + | chr8_1:21887362-21887381 | Msa1185180:intron | 30.0% |
| CTCTTTACTATATAATCCAC+AGG | - | chr8_1:21887565-21887584 | None:intergenic | 30.0% | |
| GGTAAAAAACATATCAACCT+CGG | - | chr8_1:21887759-21887778 | None:intergenic | 30.0% | |
| ATAGTAGGATTCATGCAAAA+AGG | - | chr8_1:21887824-21887843 | None:intergenic | 30.0% | |
| GTCATATTCATAAGCATAGT+AGG | - | chr8_1:21887839-21887858 | None:intergenic | 30.0% | |
| TATCTTCACAAGTTTACGTT+GGG | - | chr8_1:21887987-21888006 | None:intergenic | 30.0% | |
| TTATCTTCACAAGTTTACGT+TGG | - | chr8_1:21887988-21888007 | None:intergenic | 30.0% | |
| ATCATAGTGAGTTATCACAT+TGG | + | chr8_1:21888157-21888176 | Msa1185180:intron | 30.0% | |
| ! | CCAAGAGAAATCAATTTTCT+TGG | - | chr8_1:21888221-21888240 | None:intergenic | 30.0% |
| ! | CCAAGAAAATTGATTTCTCT+TGG | + | chr8_1:21888218-21888237 | Msa1185180:intron | 30.0% |
| TTGATTTCTCTTGGGAAATT+AGG | + | chr8_1:21888227-21888246 | Msa1185180:intron | 30.0% | |
| ATTTCTCAGAGACTTATGAT+AGG | - | chr8_1:21888308-21888327 | None:intergenic | 30.0% | |
| AAAATATCAGAAGGCAAACA+GGG | - | chr8_1:21888747-21888766 | None:intergenic | 30.0% | |
| AAAAATATCAGAAGGCAAAC+AGG | - | chr8_1:21888748-21888767 | None:intergenic | 30.0% | |
| !! | GATTTGTTTTCTTTGATCCA+AGG | + | chr8_1:21888802-21888821 | Msa1185180:intron | 30.0% |
| CATTAATAACAACAAACCCT+TGG | - | chr8_1:21888822-21888841 | None:intergenic | 30.0% | |
| !! | GGGTTTGTTGTTATTAATGT+TGG | + | chr8_1:21888823-21888842 | Msa1185180:intron | 30.0% |
| TGATGAATATCCCTTTAATG+TGG | + | chr8_1:21888861-21888880 | Msa1185180:intron | 30.0% | |
| GCAAAATACACCACATTAAA+GGG | - | chr8_1:21888874-21888893 | None:intergenic | 30.0% | |
| AGCAAAATACACCACATTAA+AGG | - | chr8_1:21888875-21888894 | None:intergenic | 30.0% | |
| TGAGTATTTACGTATCTTGT+TGG | + | chr8_1:21888900-21888919 | Msa1185180:intron | 30.0% | |
| GAGTATTTACGTATCTTGTT+GGG | + | chr8_1:21888901-21888920 | Msa1185180:intron | 30.0% | |
| !!! | ATTTTTAGTCTTCGCAATAG+TGG | + | chr8_1:21888947-21888966 | Msa1185180:intron | 30.0% |
| ! | TATACCCCTATAACAGTTTT+GGG | + | chr8_1:21888986-21889005 | Msa1185180:intron | 30.0% |
| TATTACAGATCAAAAACCGT+TGG | - | chr8_1:21889040-21889059 | None:intergenic | 30.0% | |
| !!! | ATTCCCATCAGTTTTAGAAA+AGG | + | chr8_1:21889163-21889182 | Msa1185180:CDS | 30.0% |
| !!! | TTCCCATCAGTTTTAGAAAA+GGG | + | chr8_1:21889164-21889183 | Msa1185180:CDS | 30.0% |
| ! | TTTAGTCAGGTATGCTTTTA+AGG | + | chr8_1:21889230-21889249 | Msa1185180:intron | 30.0% |
| ATAATTGTGTGAAGTTGACT+AGG | + | chr8_1:21889284-21889303 | Msa1185180:intron | 30.0% | |
| AGATATACTACAATGCTGTA+GGG | - | chr8_1:21889462-21889481 | None:intergenic | 30.0% | |
| TTATTCAGTGACATAACTAG+GGG | + | chr8_1:21889633-21889652 | Msa1185180:intron | 30.0% | |
| ! | TCTAAGGTTTGAGTATATGA+AGG | - | chr8_1:21889976-21889995 | None:intergenic | 30.0% |
| GCTTTATGAAACAGAAAGAT+TGG | + | chr8_1:21890099-21890118 | Msa1185180:CDS | 30.0% | |
| AATGCAGATATATAAGTCAC+AGG | - | chr8_1:21890214-21890233 | None:intergenic | 30.0% | |
| !! | CATTCTAGCTTTAAGTAACT+TGG | - | chr8_1:21890287-21890306 | None:intergenic | 30.0% |
| CATCATACAACATGTAAAAC+TGG | - | chr8_1:21890333-21890352 | None:intergenic | 30.0% | |
| !!! | GTTTTGAAAGGAATGTTGAA+AGG | - | chr8_1:21890658-21890677 | None:intergenic | 30.0% |
| ! | GATATTGGTTGAAAGTTAAG+TGG | + | chr8_1:21890683-21890702 | Msa1185180:intron | 30.0% |
| AAACACTTTCTGTTATTGGT+TGG | - | chr8_1:21890780-21890799 | None:intergenic | 30.0% | |
| CTTCAAACACTTTCTGTTAT+TGG | - | chr8_1:21890784-21890803 | None:intergenic | 30.0% | |
| ! | TTTTGTATAATAGTGACCAG+AGG | + | chr8_1:21890907-21890926 | Msa1185180:intron | 30.0% |
| TTTGTATAATAGTGACCAGA+GGG | + | chr8_1:21890908-21890927 | Msa1185180:intron | 30.0% | |
| TTGTAATTATATACTCCCTC+TGG | - | chr8_1:21890926-21890945 | None:intergenic | 30.0% | |
| AATTGGAGAGAGTCAAAATA+GGG | + | chr8_1:21891213-21891232 | Msa1185180:CDS | 30.0% | |
| ! | GTCATTACTGTATTCTCTTT+TGG | + | chr8_1:21891275-21891294 | Msa1185180:three_prime_UTR | 30.0% |
| ! | CATCATTCTCTTTTCTGTTT+TGG | + | chr8_1:21891335-21891354 | Msa1185180:three_prime_UTR | 30.0% |
| ACTCATAAACTGAAAGTTAC+AGG | - | chr8_1:21891437-21891456 | None:intergenic | 30.0% | |
| GTAACTTTCAGTTTATGAGT+TGG | + | chr8_1:21891437-21891456 | Msa1185180:three_prime_UTR | 30.0% | |
| CTTTCCAAGTTAAAAGGTAA+AGG | + | chr8_1:21891497-21891516 | Msa1185180:three_prime_UTR | 30.0% | |
| TGTAATGTTCCTTCTGGTAA+TGG | - | chr8_1:21886222-21886241 | None:intergenic | 35.0% | |
| ATTCACAAAAACCCCTACTT+TGG | + | chr8_1:21886413-21886432 | Msa1185180:CDS | 35.0% | |
| AAAACCCCTACTTTGGTTAA+TGG | + | chr8_1:21886420-21886439 | Msa1185180:CDS | 35.0% | |
| GAAACCATTAACCAAAGTAG+GGG | - | chr8_1:21886427-21886446 | None:intergenic | 35.0% | |
| GAGAAACCATTAACCAAAGT+AGG | - | chr8_1:21886429-21886448 | None:intergenic | 35.0% | |
| TTTCTCCAATCTCTATGCTA+TGG | + | chr8_1:21886443-21886462 | Msa1185180:CDS | 35.0% | |
| ACAAACCATAGCATAGAGAT+TGG | - | chr8_1:21886451-21886470 | None:intergenic | 35.0% | |
| ! | GTTGTGATGATCTGTTTTGT+AGG | + | chr8_1:21887067-21887086 | Msa1185180:intron | 35.0% |
| ATATCTTCATGCTCAACTGT+AGG | - | chr8_1:21887101-21887120 | None:intergenic | 35.0% | |
| TACAGTTGAGCATGAAGATA+TGG | + | chr8_1:21887100-21887119 | Msa1185180:CDS | 35.0% | |
| !! | AAGATATGGCTAGTTCTGAT+GGG | + | chr8_1:21887114-21887133 | Msa1185180:CDS | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+AGG | + | chr8_1:21887509-21887528 | Msa1185180:intron | 35.0% |
| AGATCGAGAGATAAATGAGT+TGG | + | chr8_1:21887627-21887646 | Msa1185180:intron | 35.0% | |
| AATCCTGAAAATAGATACCG+AGG | + | chr8_1:21887739-21887758 | Msa1185180:intron | 35.0% | |
| ATCTTTACTTTATCCTAGGC+AGG | + | chr8_1:21887931-21887950 | Msa1185180:intron | 35.0% | |
| !! | ATTTGTTGCTTGTTATGTGG+AGG | + | chr8_1:21888043-21888062 | Msa1185180:intron | 35.0% |
| !! | GAGGCTTTAGATTAATCTTG+AGG | + | chr8_1:21888062-21888081 | Msa1185180:intron | 35.0% |
| GATAACTCACTATGATGACT+TGG | - | chr8_1:21888153-21888172 | None:intergenic | 35.0% | |
| TGAGTTATCACATTGGTATC+TGG | + | chr8_1:21888164-21888183 | Msa1185180:intron | 35.0% | |
| GCAACATTTCAATACCCTAT+AGG | - | chr8_1:21888464-21888483 | None:intergenic | 35.0% | |
| TGTTGGGATTTGTGTTTAGT+TGG | + | chr8_1:21888917-21888936 | Msa1185180:intron | 35.0% | |
| ! | CTATACCCCTATAACAGTTT+TGG | + | chr8_1:21888985-21889004 | Msa1185180:intron | 35.0% |
| ! | ATACCCCTATAACAGTTTTG+GGG | + | chr8_1:21888987-21889006 | Msa1185180:intron | 35.0% |
| !!! | GACCCTTTTCTAAAACTGAT+GGG | - | chr8_1:21889169-21889188 | None:intergenic | 35.0% |
| !!! | AGACCCTTTTCTAAAACTGA+TGG | - | chr8_1:21889170-21889189 | None:intergenic | 35.0% |
| TTTAGAAAAGGGTCTTGCAA+AGG | + | chr8_1:21889175-21889194 | Msa1185180:CDS | 35.0% | |
| ACCAGTGTTGTCTAATATTG+TGG | + | chr8_1:21889338-21889357 | Msa1185180:intron | 35.0% | |
| CCAGTGTTGTCTAATATTGT+GGG | + | chr8_1:21889339-21889358 | Msa1185180:intron | 35.0% | |
| ! | TTTTGTCAAGTAGCGACTAT+AGG | + | chr8_1:21889434-21889453 | Msa1185180:intron | 35.0% |
| TTTGTCAAGTAGCGACTATA+GGG | + | chr8_1:21889435-21889454 | Msa1185180:intron | 35.0% | |
| CAGATATACTACAATGCTGT+AGG | - | chr8_1:21889463-21889482 | None:intergenic | 35.0% | |
| AACTAACCTATCATCTGCAT+CGG | + | chr8_1:21889541-21889560 | Msa1185180:intron | 35.0% | |
| !!! | TGTTTTGGTTCTTCTGATTC+TGG | + | chr8_1:21889581-21889600 | Msa1185180:intron | 35.0% |
| TTCATAAAGCGAGAGGAATT+CGG | - | chr8_1:21890089-21890108 | None:intergenic | 35.0% | |
| TTTCTGTTTCATAAAGCGAG+AGG | - | chr8_1:21890096-21890115 | None:intergenic | 35.0% | |
| !! | GAAAATGCAGCAGAAGTATT+TGG | + | chr8_1:21890306-21890325 | Msa1185180:CDS | 35.0% |
| ACAAAACAACTTACCTCTTG+TGG | - | chr8_1:21890385-21890404 | None:intergenic | 35.0% | |
| ! | GCTATAGCTCTATAGTTTAG+CGG | + | chr8_1:21890529-21890548 | Msa1185180:intron | 35.0% |
| ATAGTTTAGCGGAGTTTGAA+CGG | + | chr8_1:21890540-21890559 | Msa1185180:intron | 35.0% | |
| TCTCATGCAGTAAATATGCA+TGG | - | chr8_1:21890610-21890629 | None:intergenic | 35.0% | |
| TGATCTCATTATCTTTGTGG+TGG | + | chr8_1:21890721-21890740 | Msa1185180:intron | 35.0% | |
| GATCTCATTATCTTTGTGGT+GGG | + | chr8_1:21890722-21890741 | Msa1185180:intron | 35.0% | |
| CAATTTGCACTACTGATCAA+AGG | - | chr8_1:21891050-21891069 | None:intergenic | 35.0% | |
| CTACTGCATATGGATTCATA+CGG | - | chr8_1:21891125-21891144 | None:intergenic | 35.0% | |
| TACTTGATCTCTACTGCATA+TGG | - | chr8_1:21891135-21891154 | None:intergenic | 35.0% | |
| GCTACAACACCAATTAAAAG+AGG | + | chr8_1:21891181-21891200 | Msa1185180:CDS | 35.0% | |
| ! | CTTCTTCTGCCTCTTTTAAT+TGG | - | chr8_1:21891193-21891212 | None:intergenic | 35.0% |
| AAAAGAGGCAGAAGAAGAAT+TGG | + | chr8_1:21891196-21891215 | Msa1185180:CDS | 35.0% | |
| GAATTGGAGAGAGTCAAAAT+AGG | + | chr8_1:21891212-21891231 | Msa1185180:CDS | 35.0% | |
| AGTCAAAATAGGGAAGAACA+AGG | + | chr8_1:21891223-21891242 | Msa1185180:CDS | 35.0% | |
| !! | GTCACCTTTACCTTTTAACT+TGG | - | chr8_1:21891504-21891523 | None:intergenic | 35.0% |
| GTTAAAAGGTAAAGGTGACA+TGG | + | chr8_1:21891505-21891524 | Msa1185180:three_prime_UTR | 35.0% | |
| ! | CAACGTTGTTGCTATTGCTA+TGG | + | chr8_1:21886188-21886207 | Msa1185180:exon | 40.0% |
| GAAGATCAACCATTACCAGA+AGG | + | chr8_1:21886210-21886229 | Msa1185180:CDS | 40.0% | |
| !! | ACCTTAAAGTGGGTTTTCGT+TGG | + | chr8_1:21886261-21886280 | Msa1185180:CDS | 40.0% |
| ACCAACGAAAACCCACTTTA+AGG | - | chr8_1:21886265-21886284 | None:intergenic | 40.0% | |
| !! | TTAAAGTGGGTTTTCGTTGG+TGG | + | chr8_1:21886264-21886283 | Msa1185180:CDS | 40.0% |
| GCTAAGATTATGAGCAGGAT+CGG | - | chr8_1:21886376-21886395 | None:intergenic | 40.0% | |
| ACAAACCAACCCCAAAAAAG+GGG | - | chr8_1:21887032-21887051 | None:intergenic | 40.0% | |
| CACAAACCAACCCCAAAAAA+GGG | - | chr8_1:21887033-21887052 | None:intergenic | 40.0% | |
| ! | GTGATGATCTGTTTTGTAGG+AGG | + | chr8_1:21887070-21887089 | Msa1185180:intron | 40.0% |
| ! | ATGATCTGTTTTGTAGGAGG+TGG | + | chr8_1:21887073-21887092 | Msa1185180:intron | 40.0% |
| !! | GAAGATATGGCTAGTTCTGA+TGG | + | chr8_1:21887113-21887132 | Msa1185180:CDS | 40.0% |
| ! | AACTTGTTCAATGAGCTAGC+CGG | + | chr8_1:21887143-21887162 | Msa1185180:CDS | 40.0% |
| ATCAATTCCAGGAATTGCAC+CGG | - | chr8_1:21887165-21887184 | None:intergenic | 40.0% | |
| TGCAATTCCTGGAATTGATG+AGG | + | chr8_1:21887166-21887185 | Msa1185180:CDS | 40.0% | |
| GTGTCTGTTATCACCCTTAT+CGG | + | chr8_1:21887417-21887436 | Msa1185180:intron | 40.0% | |
| AGCACCTGTAGTAGAAAAGA+TGG | + | chr8_1:21887498-21887517 | Msa1185180:intron | 40.0% | |
| ACCTGTAGTAGAAAAGATGG+TGG | + | chr8_1:21887501-21887520 | Msa1185180:intron | 40.0% | |
| ! | TCCACCATCTTTTCTACTAC+AGG | - | chr8_1:21887505-21887524 | None:intergenic | 40.0% |
| AAACTAGGCTTAGGTGGTTT+GGG | + | chr8_1:21887524-21887543 | Msa1185180:intron | 40.0% | |
| TAGAACTTTATGGCGTCGTT+TGG | + | chr8_1:21887669-21887688 | Msa1185180:intron | 40.0% | |
| ! | CTTATCCCACTAAGTTGGAT+CGG | - | chr8_1:21887704-21887723 | None:intergenic | 40.0% |
| ! | CAACCTCGGTATCTATTTTC+AGG | - | chr8_1:21887745-21887764 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGCTTACCTGCCT+AGG | - | chr8_1:21887947-21887966 | None:intergenic | 40.0% |
| GTTATCACATTGGTATCTGG+TGG | + | chr8_1:21888167-21888186 | Msa1185180:intron | 40.0% | |
| TCTCTTGGGAAATTAGGACA+TGG | + | chr8_1:21888233-21888252 | Msa1185180:intron | 40.0% | |
| CTCTTGGGAAATTAGGACAT+GGG | + | chr8_1:21888234-21888253 | Msa1185180:intron | 40.0% | |
| ! | CAGTTTTGCAGAGCAGTTTA+GGG | + | chr8_1:21888560-21888579 | Msa1185180:intron | 40.0% |
| ! | ATAGGGGTATAGCAGATAGT+AGG | - | chr8_1:21888977-21888996 | None:intergenic | 40.0% |
| TTTCAGATTGGTGCAGACAA+TGG | + | chr8_1:21889082-21889101 | Msa1185180:intron | 40.0% | |
| ATTGCAACAGTCTAAGGGTA+TGG | - | chr8_1:21889145-21889164 | None:intergenic | 40.0% | |
| TGGGAATTGCAACAGTCTAA+GGG | - | chr8_1:21889150-21889169 | None:intergenic | 40.0% | |
| ATGGGAATTGCAACAGTCTA+AGG | - | chr8_1:21889151-21889170 | None:intergenic | 40.0% | |
| ! | ATTTGGGGGTTTGTTTAGTC+AGG | + | chr8_1:21889217-21889236 | Msa1185180:CDS | 40.0% |
| CCCACAATATTAGACAACAC+TGG | - | chr8_1:21889342-21889361 | None:intergenic | 40.0% | |
| TTGTCAAGTAGCGACTATAG+GGG | + | chr8_1:21889436-21889455 | Msa1185180:intron | 40.0% | |
| TTTGGCATGGGTGATGATTT+CGG | + | chr8_1:21889755-21889774 | Msa1185180:CDS | 40.0% | |
| TCATAAAGCGAGAGGAATTC+GGG | - | chr8_1:21890088-21890107 | None:intergenic | 40.0% | |
| CAAGTTATCTTCGACGATGA+AGG | + | chr8_1:21890172-21890191 | Msa1185180:CDS | 40.0% | |
| TAGTTTAGCGGAGTTTGAAC+GGG | + | chr8_1:21890541-21890560 | Msa1185180:intron | 40.0% | |
| TCAATTGTGTATCCCCAAAG+CGG | - | chr8_1:21890567-21890586 | None:intergenic | 40.0% | |
| ! | GTGTTTGAAGTCAGAGAAGT+CGG | + | chr8_1:21890794-21890813 | Msa1185180:intron | 40.0% |
| TGCTTATAATAGTGACCGGA+GGG | - | chr8_1:21890855-21890874 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr8_1:21890856-21890875 | None:intergenic | 40.0% | |
| GATCAGTAGTGCAAATTGAC+AGG | + | chr8_1:21891052-21891071 | Msa1185180:intron | 40.0% | |
| AGTGCAAATTGACAGGTTAC+TGG | + | chr8_1:21891059-21891078 | Msa1185180:intron | 40.0% | |
| GCGGTTAGAGAATAGAGTAA+CGG | + | chr8_1:21891157-21891176 | Msa1185180:CDS | 40.0% | |
| GCATCGCTAAGATTATGAGC+AGG | - | chr8_1:21886381-21886400 | None:intergenic | 45.0% | |
| !!! | TTGAACCCCTTTTTTGGGGT+TGG | + | chr8_1:21887024-21887043 | Msa1185180:intron | 45.0% |
| GCACAAACCAACCCCAAAAA+AGG | - | chr8_1:21887034-21887053 | None:intergenic | 45.0% | |
| !! | TATGGCTAGTTCTGATGGGA+TGG | + | chr8_1:21887118-21887137 | Msa1185180:CDS | 45.0% |
| CTCATAGCCTCATCAATTCC+AGG | - | chr8_1:21887176-21887195 | None:intergenic | 45.0% | |
| TAGAGAGAAAGAGAGAGAGC+TGG | + | chr8_1:21887472-21887491 | Msa1185180:intron | 45.0% | |
| !! | AGATGGTGGAAACTAGGCTT+AGG | + | chr8_1:21887515-21887534 | Msa1185180:intron | 45.0% |
| GAAACTAGGCTTAGGTGGTT+TGG | + | chr8_1:21887523-21887542 | Msa1185180:intron | 45.0% | |
| GTATGTAGAGAGAAGACCTG+TGG | + | chr8_1:21887546-21887565 | Msa1185180:intron | 45.0% | |
| ! | ACTAAGTTGGATCGGCTACA+TGG | - | chr8_1:21887696-21887715 | None:intergenic | 45.0% |
| ATGTAGCCGATCCAACTTAG+TGG | + | chr8_1:21887695-21887714 | Msa1185180:intron | 45.0% | |
| TGTAGCCGATCCAACTTAGT+GGG | + | chr8_1:21887696-21887715 | Msa1185180:intron | 45.0% | |
| CGATCCAACTTAGTGGGATA+AGG | + | chr8_1:21887702-21887721 | Msa1185180:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+TGG | - | chr8_1:21887709-21887728 | None:intergenic | 45.0% |
| CAACTTAGTGGGATAAGGCT+TGG | + | chr8_1:21887707-21887726 | Msa1185180:intron | 45.0% | |
| CTTAAGCACTACAACGACAG+AGG | - | chr8_1:21887901-21887920 | None:intergenic | 45.0% | |
| ATCACATTGGTATCTGGTGG+TGG | + | chr8_1:21888170-21888189 | Msa1185180:intron | 45.0% | |
| TCACATTGGTATCTGGTGGT+GGG | + | chr8_1:21888171-21888190 | Msa1185180:intron | 45.0% | |
| ! | AAGTGTGTGCTGCTCCTATA+GGG | + | chr8_1:21888447-21888466 | Msa1185180:intron | 45.0% |
| ! | GCAGTTTTGCAGAGCAGTTT+AGG | + | chr8_1:21888559-21888578 | Msa1185180:intron | 45.0% |
| GTATTTGATACTGCTCCCAC+TGG | + | chr8_1:21889119-21889138 | Msa1185180:CDS | 45.0% | |
| !! | ACGCTATTTTCTGCGATTGC+CGG | + | chr8_1:21889487-21889506 | Msa1185180:intron | 45.0% |
| ATAGAGCCGATGCAGATGAT+AGG | - | chr8_1:21889550-21889569 | None:intergenic | 45.0% | |
| TCACAGATGACTCGCATGTT+TGG | + | chr8_1:21889737-21889756 | Msa1185180:intron | 45.0% | |
| ATGACTCGCATGTTTGGCAT+GGG | + | chr8_1:21889743-21889762 | Msa1185180:CDS | 45.0% | |
| TTCGGTGAAGATGCAATCCT+TGG | + | chr8_1:21889773-21889792 | Msa1185180:CDS | 45.0% | |
| TCGGTGAAGATGCAATCCTT+GGG | + | chr8_1:21889774-21889793 | Msa1185180:CDS | 45.0% | |
| !! | TCATTCCTTCTAGCTTCCCA+AGG | - | chr8_1:21889793-21889812 | None:intergenic | 45.0% |
| TGGGAAGCTAGAAGGAATGA+AGG | + | chr8_1:21889793-21889812 | Msa1185180:CDS | 45.0% | |
| GGGAATGCAAACACAGACAA+AGG | - | chr8_1:21890068-21890087 | None:intergenic | 45.0% | |
| AACTTGGATTCGACATCTGC+AGG | - | chr8_1:21890271-21890290 | None:intergenic | 45.0% | |
| ATAGAGCTATAGCGCTGCTA+TGG | - | chr8_1:21890522-21890541 | None:intergenic | 45.0% | |
| ! | TTCATGAGCCCCACCATTTT+GGG | - | chr8_1:21890755-21890774 | None:intergenic | 45.0% |
| ! | ATTCATGAGCCCCACCATTT+TGG | - | chr8_1:21890756-21890775 | None:intergenic | 45.0% |
| TTCTTCCTACATACTCCCTC+CGG | + | chr8_1:21890837-21890856 | Msa1185180:intron | 45.0% | |
| GCAGTAGAGATCAAGTAGAG+CGG | + | chr8_1:21891138-21891157 | Msa1185180:CDS | 45.0% | |
| !!! | AAAAAAAAAAAAAACTTTTT+AGG | - | chr8_1:21890885-21890904 | None:intergenic | 5.0% |
| !!! | TGGGTTTTCGTTGGTGGCAA+AGG | + | chr8_1:21886270-21886289 | Msa1185180:CDS | 50.0% |
| !!! | GTTTTCGTTGGTGGCAAAGG+TGG | + | chr8_1:21886273-21886292 | Msa1185180:CDS | 50.0% |
| TGGTGGAAACTAGGCTTAGG+TGG | + | chr8_1:21887518-21887537 | Msa1185180:intron | 50.0% | |
| !! | ATTGGTATCTGGTGGTGGGA+TGG | + | chr8_1:21888175-21888194 | Msa1185180:intron | 50.0% |
| !! | TTGGTATCTGGTGGTGGGAT+GGG | + | chr8_1:21888176-21888195 | Msa1185180:intron | 50.0% |
| GCAGCACACACTTGGTTAAC+AGG | - | chr8_1:21888440-21888459 | None:intergenic | 50.0% | |
| CTATAGGAGCAGCACACACT+TGG | - | chr8_1:21888448-21888467 | None:intergenic | 50.0% | |
| ! | CAAGTGTGTGCTGCTCCTAT+AGG | + | chr8_1:21888446-21888465 | Msa1185180:intron | 50.0% |
| TCAATGCTACCTGTAGCACG+TGG | + | chr8_1:21888601-21888620 | Msa1185180:intron | 50.0% | |
| TACTGTTGACCACGTGCTAC+AGG | - | chr8_1:21888613-21888632 | None:intergenic | 50.0% | |
| ACGAAAGCGACCGCTAATTG+CGG | + | chr8_1:21888636-21888655 | Msa1185180:intron | 50.0% | |
| TTTCACAGCCGCATTTGTGC+TGG | + | chr8_1:21888670-21888689 | Msa1185180:intron | 50.0% | |
| TTCACAGCCGCATTTGTGCT+GGG | + | chr8_1:21888671-21888690 | Msa1185180:intron | 50.0% | |
| GCGCCCCAAAACTGTTATAG+GGG | - | chr8_1:21888993-21889012 | None:intergenic | 50.0% | |
| GGCGCCCCAAAACTGTTATA+GGG | - | chr8_1:21888994-21889013 | None:intergenic | 50.0% | |
| TGGCGCCCCAAAACTGTTAT+AGG | - | chr8_1:21888995-21889014 | None:intergenic | 50.0% | |
| ! | AGTCTAAGGGTATGGCCAGT+GGG | - | chr8_1:21889137-21889156 | None:intergenic | 50.0% |
| TTGTGGGTATAGCAGCGCTA+TGG | + | chr8_1:21889355-21889374 | Msa1185180:intron | 50.0% | |
| GATGACTCGCATGTTTGGCA+TGG | + | chr8_1:21889742-21889761 | Msa1185180:intron | 50.0% | |
| GCAATCCTTGGGAAGCTAGA+AGG | + | chr8_1:21889785-21889804 | Msa1185180:CDS | 50.0% | |
| CTTACCTCTTGTGGAAGCAG+TGG | - | chr8_1:21890376-21890395 | None:intergenic | 50.0% | |
| GCTATAGCGCAGCTACTTGA+CGG | - | chr8_1:21890428-21890447 | None:intergenic | 50.0% | |
| GGACCCATTCCCAAAATGGT+GGG | + | chr8_1:21890743-21890762 | Msa1185180:intron | 50.0% | |
| GACCCATTCCCAAAATGGTG+GGG | + | chr8_1:21890744-21890763 | Msa1185180:intron | 50.0% | |
| !! | AGCCCCACCATTTTGGGAAT+GGG | - | chr8_1:21890749-21890768 | None:intergenic | 50.0% |
| ! | AAGTCGGAGAGTGTGTTGCT+AGG | + | chr8_1:21890810-21890829 | Msa1185180:intron | 50.0% |
| !! | GTTGGTGGCAAAGGTGGTGT+TGG | + | chr8_1:21886279-21886298 | Msa1185180:CDS | 55.0% |
| AGGCAGCAATCAGAGGACAC+GGG | - | chr8_1:21887881-21887900 | None:intergenic | 55.0% | |
| GAGGCAGCAATCAGAGGACA+CGG | - | chr8_1:21887882-21887901 | None:intergenic | 55.0% | |
| ACGACAGAGGCAGCAATCAG+AGG | - | chr8_1:21887888-21887907 | None:intergenic | 55.0% | |
| ACCGCTAATTGCGGCAGAGA+AGG | + | chr8_1:21888645-21888664 | Msa1185180:intron | 55.0% | |
| GCCTTCTCTGCCGCAATTAG+CGG | - | chr8_1:21888649-21888668 | None:intergenic | 55.0% | |
| TCACAGCCGCATTTGTGCTG+GGG | + | chr8_1:21888672-21888691 | Msa1185180:intron | 55.0% | |
| TGCGATCCCCAGCACAAATG+CGG | - | chr8_1:21888681-21888700 | None:intergenic | 55.0% | |
| ! | CAGTCTAAGGGTATGGCCAG+TGG | - | chr8_1:21889138-21889157 | None:intergenic | 55.0% |
| TATAGCAGCGCTATGGCGCA+GGG | + | chr8_1:21889362-21889381 | Msa1185180:intron | 55.0% | |
| ! | GAGTTTGAACGGGCCGCTTT+GGG | + | chr8_1:21890551-21890570 | Msa1185180:intron | 55.0% |
| ! | AGTTTGAACGGGCCGCTTTG+GGG | + | chr8_1:21890552-21890571 | Msa1185180:intron | 55.0% |
| GGTGGGACCCATTCCCAAAA+TGG | + | chr8_1:21890739-21890758 | Msa1185180:intron | 55.0% | |
| GGGACCCATTCCCAAAATGG+TGG | + | chr8_1:21890742-21890761 | Msa1185180:intron | 55.0% | |
| !! | GAGCCCCACCATTTTGGGAA+TGG | - | chr8_1:21890750-21890769 | None:intergenic | 55.0% |
| ! | AGTGACCGGAGGGAGTATGT+AGG | - | chr8_1:21890845-21890864 | None:intergenic | 55.0% |
| GAGCTAGCCGGTGCAATTCC+TGG | + | chr8_1:21887155-21887174 | Msa1185180:CDS | 60.0% | |
| GTATAGCAGCGCTATGGCGC+AGG | + | chr8_1:21889361-21889380 | Msa1185180:intron | 60.0% | |
| ATAGCAGCGCTATGGCGCAG+GGG | + | chr8_1:21889363-21889382 | Msa1185180:intron | 60.0% | |
| GCTGCCACTGCTTCCACAAG+AGG | + | chr8_1:21890369-21890388 | Msa1185180:CDS | 60.0% | |
| GGAGTTTGAACGGGCCGCTT+TGG | + | chr8_1:21890550-21890569 | Msa1185180:intron | 60.0% | |
| ! | GGAGTGTCAGAGTGTGCTGC+TGG | - | chr8_1:21890637-21890656 | None:intergenic | 60.0% |
| ! | ACGGGAGAGTGCAGGACAGC+AGG | - | chr8_1:21887863-21887882 | None:intergenic | 65.0% |
| ! | CAGAGGACACGGGAGAGTGC+AGG | - | chr8_1:21887871-21887890 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 21886006 | 21891562 | 21886006 | ID=Msa1185180;Name=Msa1185180 |
| chr8_1 | mRNA | 21886006 | 21891562 | 21886006 | ID=Msa1185180-mRNA-1;Parent=Msa1185180;Name=Msa1185180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=201|1|1|1|1|1|7|312|358 |
| chr8_1 | exon | 21886006 | 21886464 | 21886006 | ID=Msa1185180-mRNA-1:exon:8187;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21887089 | 21887213 | 21887089 | ID=Msa1185180-mRNA-1:exon:8188;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21889088 | 21889238 | 21889088 | ID=Msa1185180-mRNA-1:exon:8189;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21889743 | 21889853 | 21889743 | ID=Msa1185180-mRNA-1:exon:8190;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21890055 | 21890193 | 21890055 | ID=Msa1185180-mRNA-1:exon:8191;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21890275 | 21890390 | 21890275 | ID=Msa1185180-mRNA-1:exon:8192;Parent=Msa1185180-mRNA-1 |
| chr8_1 | exon | 21891074 | 21891562 | 21891074 | ID=Msa1185180-mRNA-1:exon:8193;Parent=Msa1185180-mRNA-1 |
| chr8_1 | five_prime_UTR | 21886006 | 21886206 | 21886006 | ID=Msa1185180-mRNA-1:five_prime_utr;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21886207 | 21886464 | 21886207 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21887089 | 21887213 | 21887089 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21889088 | 21889238 | 21889088 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21889743 | 21889853 | 21889743 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21890055 | 21890193 | 21890055 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21890275 | 21890390 | 21890275 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | CDS | 21891074 | 21891250 | 21891074 | ID=Msa1185180-mRNA-1:cds;Parent=Msa1185180-mRNA-1 |
| chr8_1 | three_prime_UTR | 21891251 | 21891562 | 21891251 | ID=Msa1185180-mRNA-1:three_prime_utr;Parent=Msa1185180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
