AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236390 MtrunA17_Chr8g0346531 100.000 112 0 0 1 112 1 112 4.91e-81 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236390 AT1G01230.1 83.929 112 18 0 1 112 1 112 2.65e-69 204
Msa1236390 AT5G42000.1 85.321 109 16 0 4 112 1 109 5.72e-69 204
Msa1236390 AT5G42000.2 85.321 109 16 0 4 112 1 109 7.58e-69 202

Find 37 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCAAATTATGCAAAATT+TGG 0.095930 8_2:-15297854 None:intergenic
AAACTTGATGAATTTGATTT+TGG 0.213568 8_2:-15297768 None:intergenic
ATTGAATCAAAATCAAAATA+AGG 0.230522 8_2:+15297690 Msa1236390:five_prime_UTR
TCTGTCTTTGGTTGTTCTCC+TGG 0.279321 8_2:+15297999 Msa1236390:CDS
TATTCAACGTTTCAATCAAA+AGG 0.343955 8_2:+15297816 Msa1236390:five_prime_UTR
ATATAAACACTAGCAGTAAT+TGG 0.345719 8_2:+15299993 Msa1236390:three_prime_UTR
AATGCAGGTATGCAAGTTAA+AGG 0.349040 8_2:-15299904 None:intergenic
GGTTTACCTATCCTGGTGTT+TGG 0.365733 8_2:+15297931 Msa1236390:CDS
GTTGTTCTCCTGGGATTGCT+TGG 0.366309 8_2:+15298009 Msa1236390:CDS
AACTCCATTTGCAGATGATC+AGG 0.373395 8_2:+15299778 Msa1236390:CDS
CTGTCTTTGGTTGTTCTCCT+GGG 0.396410 8_2:+15298000 Msa1236390:CDS
TGCCACCTGCGGATCTGAAC+AGG 0.406149 8_2:+15297898 Msa1236390:CDS
GAAAGCAGCTCACTCGTAAC+AGG 0.409598 8_2:+15299843 Msa1236390:CDS
TTGAATCAAAATCAAAATAA+GGG 0.429578 8_2:+15297691 Msa1236390:five_prime_UTR
TGAGCTAAAATTGATTTGCT+TGG 0.434788 8_2:-15297596 None:intergenic
TTTAACTTGCATACCTGCAT+TGG 0.435889 8_2:+15299906 Msa1236390:three_prime_UTR
ACAGAATGGTTTACCTATCC+TGG 0.480715 8_2:+15297924 Msa1236390:CDS
ATTCAACGTTTCAATCAAAA+GGG 0.484393 8_2:+15297817 Msa1236390:five_prime_UTR
GTGTTCCTGTTCAGATCCGC+AGG 0.489888 8_2:-15297903 None:intergenic
ATCCCCTGATCATCTGCAAA+TGG 0.508493 8_2:-15299782 None:intergenic
TAGATTGACATGGTGGGAGC+AGG 0.523259 8_2:+15299811 Msa1236390:CDS
ATGGAGTTCCTTTCTTCCAG+TGG 0.534161 8_2:-15299763 None:intergenic
ATCTGAACAGGAACACAGAA+TGG 0.543897 8_2:+15297910 Msa1236390:CDS
CCATGATCCATGAAAAGAAG+AGG 0.551222 8_2:-15297971 None:intergenic
ACTCCATTTGCAGATGATCA+GGG 0.556480 8_2:+15299779 Msa1236390:CDS
ACAATAGTCCAAGCAATCCC+AGG 0.557415 8_2:-15298017 None:intergenic
TGTTGTCCAAACACCAGGAT+AGG 0.561104 8_2:-15297937 None:intergenic
TGGTGGGAGCAGGTCGACAA+TGG 0.574609 8_2:+15299821 Msa1236390:CDS
ATATATGTTGTCCAAACACC+AGG 0.585932 8_2:-15297942 None:intergenic
AGGAGAACTTACAGAACCAA+AGG 0.601770 8_2:-15299884 None:intergenic
CTCCATTTGCAGATGATCAG+GGG 0.621400 8_2:+15299780 Msa1236390:CDS
TCTACAATAGATTGACATGG+TGG 0.624727 8_2:+15299804 Msa1236390:CDS
TGTGTCTGTGAAAATGTGAA+AGG 0.645199 8_2:-15297647 None:intergenic
CTACAATAGATTGACATGGT+GGG 0.646152 8_2:+15299805 Msa1236390:CDS
TTCCTGTTCAGATCCGCAGG+TGG 0.663476 8_2:-15297900 None:intergenic
TGTCAAAGCTGTGCCACCTG+CGG 0.675301 8_2:+15297887 Msa1236390:CDS
GGATCTACAATAGATTGACA+TGG 0.711938 8_2:+15299801 Msa1236390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAAACAAAATAAA+AGG - chr8_2:15298086-15298105 None:intergenic 10.0%
!! ATTGAATCAAAATCAAAATA+AGG + chr8_2:15297690-15297709 Msa1236390:five_prime_UTR 15.0%
!! TTGAATCAAAATCAAAATAA+GGG + chr8_2:15297691-15297710 Msa1236390:five_prime_UTR 15.0%
!! AAAACAAAATAAAAGGAAAA+GGG - chr8_2:15298079-15298098 None:intergenic 15.0%
!! AAAAACAAAATAAAAGGAAA+AGG - chr8_2:15298080-15298099 None:intergenic 15.0%
!! ATTTAGAAAAGATAAAATAG+AGG + chr8_2:15298641-15298660 Msa1236390:intron 15.0%
!! TAAAATAAAAACTGTGATAT+CGG - chr8_2:15299954-15299973 None:intergenic 15.0%
!!! CACAGTTTTTATTTTATTTT+AGG + chr8_2:15299958-15299977 Msa1236390:three_prime_UTR 15.0%
!!! AAACTTGATGAATTTGATTT+TGG - chr8_2:15297771-15297790 None:intergenic 20.0%
!! AAACTACAAAATTTCCAAAT+AGG - chr8_2:15298209-15298228 None:intergenic 20.0%
!!! TTTGGAAATTTTGTAGTTTA+AGG + chr8_2:15298210-15298229 Msa1236390:intron 20.0%
!!! TTTGAATTATGTTGTTTTGA+TGG + chr8_2:15298266-15298285 Msa1236390:intron 20.0%
!! ACCAAAAATAATTTGAGAAA+AGG + chr8_2:15298333-15298352 Msa1236390:intron 20.0%
!!! TCCTTTTCTCAAATTATTTT+TGG - chr8_2:15298337-15298356 None:intergenic 20.0%
!! TATTTATTGAGTCATGATTT+AGG + chr8_2:15298546-15298565 Msa1236390:intron 20.0%
!! ATCTTGTGTTAATGATAAAT+AGG + chr8_2:15298600-15298619 Msa1236390:intron 20.0%
!!! TCATTTTCTTAAACTATTAC+TGG - chr8_2:15298759-15298778 None:intergenic 20.0%
!!! TCATTTTCTTAAACTAATAC+TGG - chr8_2:15298826-15298845 None:intergenic 20.0%
!!! GTATTAGTTTAAGAAAATGA+AGG + chr8_2:15298826-15298845 Msa1236390:intron 20.0%
!! AAAATAAGGGTTACGTTTTT+GGG + chr8_2:15297704-15297723 Msa1236390:five_prime_UTR 25.0%
!!! TTGATGAATTTGATTTTGGT+GGG - chr8_2:15297767-15297786 None:intergenic 25.0%
! TATTCAACGTTTCAATCAAA+AGG + chr8_2:15297816-15297835 Msa1236390:five_prime_UTR 25.0%
! ATTCAACGTTTCAATCAAAA+GGG + chr8_2:15297817-15297836 Msa1236390:five_prime_UTR 25.0%
! CCATCAAATTATGCAAAATT+TGG - chr8_2:15297857-15297876 None:intergenic 25.0%
!! CCAAATTTTGCATAATTTGA+TGG + chr8_2:15297854-15297873 Msa1236390:exon 25.0%
! TATCTTGAAGTTAATTGTGA+CGG + chr8_2:15298501-15298520 Msa1236390:intron 25.0%
! GGAAGACATATATAAATTAG+AGG + chr8_2:15298675-15298694 Msa1236390:intron 25.0%
!! TAAATTAGAGGTATGCTATT+AGG + chr8_2:15298687-15298706 Msa1236390:intron 25.0%
! TTAAATGTAATCACATGTGT+CGG + chr8_2:15298852-15298871 Msa1236390:intron 25.0%
! AGAAAAATTAGAACATTGCA+AGG - chr8_2:15299307-15299326 None:intergenic 25.0%
! TTGATATGATTATGATTTCG+CGG + chr8_2:15299444-15299463 Msa1236390:intron 25.0%
!!! TTCATCTTCCTTTGATTTTT+TGG + chr8_2:15299500-15299519 Msa1236390:intron 25.0%
!!! TCATCTTCCTTTGATTTTTT+GGG + chr8_2:15299501-15299520 Msa1236390:intron 25.0%
! CATAGTCAAACATAATAACA+AGG + chr8_2:15299547-15299566 Msa1236390:intron 25.0%
!! TTTTATAAAAGCTACTTGAC+TGG + chr8_2:15299621-15299640 Msa1236390:intron 25.0%
! TTTATAAAAGCTACTTGACT+GGG + chr8_2:15299622-15299641 Msa1236390:intron 25.0%
!! GTTAATTTGATCTCTTTACA+TGG + chr8_2:15299696-15299715 Msa1236390:intron 25.0%
! ATATAAACACTAGCAGTAAT+TGG + chr8_2:15299993-15300012 Msa1236390:three_prime_UTR 25.0%
!! TGAGCTAAAATTGATTTGCT+TGG - chr8_2:15297599-15297618 None:intergenic 30.0%
! CAAAATAAGGGTTACGTTTT+TGG + chr8_2:15297703-15297722 Msa1236390:five_prime_UTR 30.0%
!!! ATTTTGGTGGGTTTGATTTA+GGG - chr8_2:15297755-15297774 None:intergenic 30.0%
!! CTTGATGAATTTGATTTTGG+TGG - chr8_2:15297768-15297787 None:intergenic 30.0%
TAATCATCAAAGGACAAATC+AGG - chr8_2:15298186-15298205 None:intergenic 30.0%
! TCCTTTGATGATTACCTATT+TGG + chr8_2:15298192-15298211 Msa1236390:intron 30.0%
TCCAAATAGGTAATCATCAA+AGG - chr8_2:15298196-15298215 None:intergenic 30.0%
!!! TATTTTTGGTATCGACATGT+TGG - chr8_2:15298323-15298342 None:intergenic 30.0%
ACTGTATGTATGAGTTTCAT+GGG + chr8_2:15298453-15298472 Msa1236390:intron 30.0%
GTGTTAATGATAAATAGGTC+AGG + chr8_2:15298605-15298624 Msa1236390:intron 30.0%
TTAAATGTAACCACATGTGT+CGG + chr8_2:15298785-15298804 Msa1236390:intron 30.0%
ATTTAGTAAAGCTGACACTT+TGG - chr8_2:15298915-15298934 None:intergenic 30.0%
ACTAAATCCTAATGTGCTAT+TGG + chr8_2:15298928-15298947 Msa1236390:intron 30.0%
TTTACTTCCAATAGCACATT+AGG - chr8_2:15298938-15298957 None:intergenic 30.0%
AGTTAACGTAAACTAGCAAT+TGG - chr8_2:15299010-15299029 None:intergenic 30.0%
TAGTTTACGTTAACTGCAAT+TGG + chr8_2:15299015-15299034 Msa1236390:intron 30.0%
TAAACTACTCCTAGTTAACA+AGG - chr8_2:15299397-15299416 None:intergenic 30.0%
TCATAATCATATCAAGTACC+TGG - chr8_2:15299439-15299458 None:intergenic 30.0%
AATGCTACATGAGCTAAAAT+GGG - chr8_2:15299576-15299595 None:intergenic 30.0%
AAATGCTACATGAGCTAAAA+TGG - chr8_2:15299577-15299596 None:intergenic 30.0%
!!! TAACATATCACTTTTTCCAC+TGG + chr8_2:15299747-15299766 Msa1236390:CDS 30.0%
TGTGTCTGTGAAAATGTGAA+AGG - chr8_2:15297650-15297669 None:intergenic 35.0%
!!! GATTTTGGTGGGTTTGATTT+AGG - chr8_2:15297756-15297775 None:intergenic 35.0%
ATATATGTTGTCCAAACACC+AGG - chr8_2:15297945-15297964 None:intergenic 35.0%
! TTCTCATCCTCTTCTTTTCA+TGG + chr8_2:15297964-15297983 Msa1236390:CDS 35.0%
!!! ATCATGGTTTTGTCTGTCTT+TGG + chr8_2:15297987-15298006 Msa1236390:CDS 35.0%
AATGTTCGTACTATGAAGCA+CGG + chr8_2:15298294-15298313 Msa1236390:intron 35.0%
AGTAATCATATGTGTCGTGT+TGG + chr8_2:15298367-15298386 Msa1236390:intron 35.0%
GACTGTATGTATGAGTTTCA+TGG + chr8_2:15298452-15298471 Msa1236390:intron 35.0%
CTGTATGTATGAGTTTCATG+GGG + chr8_2:15298454-15298473 Msa1236390:intron 35.0%
!! TAATTGTGACGGACATGATA+AGG + chr8_2:15298512-15298531 Msa1236390:intron 35.0%
CTGCATAGTTGTTTAGTGTA+GGG + chr8_2:15298569-15298588 Msa1236390:intron 35.0%
AAAATAGAGGACAGAGATCT+TGG + chr8_2:15298654-15298673 Msa1236390:intron 35.0%
!! TAAAGCACTGCCAAATACAT+CGG + chr8_2:15298714-15298733 Msa1236390:intron 35.0%
AAAGGATTAATGGGATACAG+AGG - chr8_2:15299047-15299066 None:intergenic 35.0%
! TCACTGTTAGAGTATTTGCT+TGG + chr8_2:15299117-15299136 Msa1236390:intron 35.0%
CTTGTCAATTGTTGTGATGA+GGG + chr8_2:15299168-15299187 Msa1236390:intron 35.0%
TAGAACATTGCAAGGATGAT+GGG - chr8_2:15299299-15299318 None:intergenic 35.0%
TTAGAACATTGCAAGGATGA+TGG - chr8_2:15299300-15299319 None:intergenic 35.0%
!! GTACTTCTAAAGTCAAACAG+AGG - chr8_2:15299341-15299360 None:intergenic 35.0%
! CTTTAGAAGTACACTAGTTC+AGG + chr8_2:15299349-15299368 Msa1236390:intron 35.0%
GTAGTCATTCCTTGTTAACT+AGG + chr8_2:15299385-15299404 Msa1236390:intron 35.0%
!!! TTTATTTTTGACTGAGAGCC+AGG + chr8_2:15299418-15299437 Msa1236390:intron 35.0%
!!! CTTCCTTTGATTTTTTGGGT+AGG + chr8_2:15299505-15299524 Msa1236390:intron 35.0%
CTACCTACCCAAAAAATCAA+AGG - chr8_2:15299511-15299530 None:intergenic 35.0%
TTGATTATGTTGTGTGCTTC+AGG + chr8_2:15299724-15299743 Msa1236390:intron 35.0%
GGATCTACAATAGATTGACA+TGG + chr8_2:15299801-15299820 Msa1236390:CDS 35.0%
TCTACAATAGATTGACATGG+TGG + chr8_2:15299804-15299823 Msa1236390:CDS 35.0%
CTACAATAGATTGACATGGT+GGG + chr8_2:15299805-15299824 Msa1236390:CDS 35.0%
! GTTTTTGACAGTTGTTCCTT+TGG + chr8_2:15299868-15299887 Msa1236390:CDS 35.0%
AATGCAGGTATGCAAGTTAA+AGG - chr8_2:15299907-15299926 None:intergenic 35.0%
!! TTTAACTTGCATACCTGCAT+TGG + chr8_2:15299906-15299925 Msa1236390:three_prime_UTR 35.0%
!!! ATACCTGCATTGGTTTTTAG+TGG + chr8_2:15299916-15299935 Msa1236390:three_prime_UTR 35.0%
!!! GTTTTTAGTGGTGTTTGTTC+CGG + chr8_2:15299928-15299947 Msa1236390:three_prime_UTR 35.0%
ATAAAAACTGTGATATCGGC+CGG - chr8_2:15299950-15299969 None:intergenic 35.0%
!!! AGGGTTACGTTTTTGGGTTT+TGG + chr8_2:15297710-15297729 Msa1236390:five_prime_UTR 40.0%
ATCTGAACAGGAACACAGAA+TGG + chr8_2:15297910-15297929 Msa1236390:CDS 40.0%
ACAGAATGGTTTACCTATCC+TGG + chr8_2:15297924-15297943 Msa1236390:CDS 40.0%
CCATGATCCATGAAAAGAAG+AGG - chr8_2:15297974-15297993 None:intergenic 40.0%
! CCTCTTCTTTTCATGGATCA+TGG + chr8_2:15297971-15297990 Msa1236390:CDS 40.0%
! CTTATTACCGAAAGTGTGTC+CGG - chr8_2:15298419-15298438 None:intergenic 40.0%
! TGACGGACATGATAAGGTTT+CGG + chr8_2:15298518-15298537 Msa1236390:intron 40.0%
GCTGCATAGTTGTTTAGTGT+AGG + chr8_2:15298568-15298587 Msa1236390:intron 40.0%
AGTAAAGCTGACACTTTGGA+TGG - chr8_2:15298911-15298930 None:intergenic 40.0%
CTTCTGTTGTCTCATGTCAT+GGG + chr8_2:15298972-15298991 Msa1236390:intron 40.0%
TCCCATTAATCCTTTGCCAT+TGG + chr8_2:15299052-15299071 Msa1236390:intron 40.0%
GCCAATGGCAAAGGATTAAT+GGG - chr8_2:15299056-15299075 None:intergenic 40.0%
TGCCAATGGCAAAGGATTAA+TGG - chr8_2:15299057-15299076 None:intergenic 40.0%
AATCCTTTGCCATTGGCATT+TGG + chr8_2:15299059-15299078 Msa1236390:intron 40.0%
TCTGTCACAGTCTCTTGATT+TGG + chr8_2:15299082-15299101 Msa1236390:intron 40.0%
TCACAACAATTGACAAGGAG+AGG - chr8_2:15299165-15299184 None:intergenic 40.0%
CCTCATCACAACAATTGACA+AGG - chr8_2:15299170-15299189 None:intergenic 40.0%
CCTTGTCAATTGTTGTGATG+AGG + chr8_2:15299167-15299186 Msa1236390:intron 40.0%
TAGGAGGAACAAAGATCTGA+AGG - chr8_2:15299212-15299231 None:intergenic 40.0%
GGCAATAAACTGAATCTAGG+AGG - chr8_2:15299228-15299247 None:intergenic 40.0%
CCAATGTAGTTCAAGAATCG+CGG - chr8_2:15299249-15299268 None:intergenic 40.0%
! TCTAAAGTCAAACAGAGGAG+AGG - chr8_2:15299336-15299355 None:intergenic 40.0%
AGCTCATGTAGCATTTAGTG+AGG + chr8_2:15299581-15299600 Msa1236390:intron 40.0%
!!! CACTTTTTCCACTGGAAGAA+AGG + chr8_2:15299755-15299774 Msa1236390:CDS 40.0%
AACTCCATTTGCAGATGATC+AGG + chr8_2:15299778-15299797 Msa1236390:CDS 40.0%
ACTCCATTTGCAGATGATCA+GGG + chr8_2:15299779-15299798 Msa1236390:CDS 40.0%
AGGAGAACTTACAGAACCAA+AGG - chr8_2:15299887-15299906 None:intergenic 40.0%
ACACCACTAAAAACCAATGC+AGG - chr8_2:15299922-15299941 None:intergenic 40.0%
GGTTTACCTATCCTGGTGTT+TGG + chr8_2:15297931-15297950 Msa1236390:CDS 45.0%
TGTTGTCCAAACACCAGGAT+AGG - chr8_2:15297940-15297959 None:intergenic 45.0%
TCTGTCTTTGGTTGTTCTCC+TGG + chr8_2:15297999-15298018 Msa1236390:CDS 45.0%
CTGTCTTTGGTTGTTCTCCT+GGG + chr8_2:15298000-15298019 Msa1236390:CDS 45.0%
ACAATAGTCCAAGCAATCCC+AGG - chr8_2:15298020-15298039 None:intergenic 45.0%
! CATATGTGTCGTGTTGGTGT+CGG + chr8_2:15298373-15298392 Msa1236390:intron 45.0%
! GTGTCATGTGCCGATGTATT+TGG - chr8_2:15298727-15298746 None:intergenic 45.0%
ACATACAACACCGACACATG+TGG - chr8_2:15298798-15298817 None:intergenic 45.0%
!! CACATGTGTCGGTGTTGTAT+TGG + chr8_2:15298796-15298815 Msa1236390:intron 45.0%
AAGCTGACACTTTGGATGGA+AGG - chr8_2:15298907-15298926 None:intergenic 45.0%
GCTTCTGTTGTCTCATGTCA+TGG + chr8_2:15298971-15298990 Msa1236390:intron 45.0%
AGACCAAATGCCAATGGCAA+AGG - chr8_2:15299065-15299084 None:intergenic 45.0%
TGTGACAGACCAAATGCCAA+TGG - chr8_2:15299071-15299090 None:intergenic 45.0%
TTGTTGTGATGAGGGATGAC+TGG + chr8_2:15299176-15299195 Msa1236390:intron 45.0%
TGTTGTGATGAGGGATGACT+GGG + chr8_2:15299177-15299196 Msa1236390:intron 45.0%
CGCGGCAATAAACTGAATCT+AGG - chr8_2:15299231-15299250 None:intergenic 45.0%
CCGCGATTCTTGAACTACAT+TGG + chr8_2:15299246-15299265 Msa1236390:intron 45.0%
ATGTAGCATTTAGTGAGGCG+AGG + chr8_2:15299586-15299605 Msa1236390:intron 45.0%
TGTAGCATTTAGTGAGGCGA+GGG + chr8_2:15299587-15299606 Msa1236390:intron 45.0%
ATGGAGTTCCTTTCTTCCAG+TGG - chr8_2:15299766-15299785 None:intergenic 45.0%
CTCCATTTGCAGATGATCAG+GGG + chr8_2:15299780-15299799 Msa1236390:CDS 45.0%
ATCCCCTGATCATCTGCAAA+TGG - chr8_2:15299785-15299804 None:intergenic 45.0%
GTTGTTCTCCTGGGATTGCT+TGG + chr8_2:15298009-15298028 Msa1236390:CDS 50.0%
TGTCGGACACTAGGACATGT+TGG + chr8_2:15298390-15298409 Msa1236390:intron 50.0%
CACTAGGACATGTTGGACAC+CGG + chr8_2:15298397-15298416 Msa1236390:intron 50.0%
TTGGACACCGGACACACTTT+CGG + chr8_2:15298409-15298428 Msa1236390:intron 50.0%
CTGTTGTCTCATGTCATGGG+TGG + chr8_2:15298975-15298994 Msa1236390:intron 50.0%
GAGAGGCTCACACGAGATAT+TGG - chr8_2:15299148-15299167 None:intergenic 50.0%
TGATGAGGGATGACTGGGTA+GGG + chr8_2:15299182-15299201 Msa1236390:intron 50.0%
GTAGCATTTAGTGAGGCGAG+GGG + chr8_2:15299588-15299607 Msa1236390:intron 50.0%
! TAGATTGACATGGTGGGAGC+AGG + chr8_2:15299811-15299830 Msa1236390:CDS 50.0%
GAAAGCAGCTCACTCGTAAC+AGG + chr8_2:15299843-15299862 Msa1236390:CDS 50.0%
TGTCAAAGCTGTGCCACCTG+CGG + chr8_2:15297887-15297906 Msa1236390:CDS 55.0%
TTCCTGTTCAGATCCGCAGG+TGG - chr8_2:15297903-15297922 None:intergenic 55.0%
GTGTTCCTGTTCAGATCCGC+AGG - chr8_2:15297906-15297925 None:intergenic 55.0%
!! TCGTGTTGGTGTCGGACACT+AGG + chr8_2:15298381-15298400 Msa1236390:intron 55.0%
! CTTTGGATGGAAGGCGTGTC+TGG - chr8_2:15298898-15298917 None:intergenic 55.0%
CTCATGTCATGGGTGGAGAG+TGG + chr8_2:15298982-15299001 Msa1236390:intron 55.0%
GTGATGAGGGATGACTGGGT+AGG + chr8_2:15299181-15299200 Msa1236390:intron 55.0%
GATGAGGGATGACTGGGTAG+GGG + chr8_2:15299183-15299202 Msa1236390:intron 55.0%
TGCCACCTGCGGATCTGAAC+AGG + chr8_2:15297898-15297917 Msa1236390:CDS 60.0%
TGGTGGGAGCAGGTCGACAA+TGG + chr8_2:15299821-15299840 Msa1236390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 15297562 15300098 15297562 ID=Msa1236390;Name=Msa1236390
chr8_2 mRNA 15297562 15300098 15297562 ID=Msa1236390-mRNA-1;Parent=Msa1236390;Name=Msa1236390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=311|1|1|1|1|1|2|200|112
chr8_2 exon 15297562 15298058 15297562 ID=Msa1236390-mRNA-1:exon:5792;Parent=Msa1236390-mRNA-1
chr8_2 exon 15299746 15300098 15299746 ID=Msa1236390-mRNA-1:exon:5793;Parent=Msa1236390-mRNA-1
chr8_2 five_prime_UTR 15297562 15297872 15297562 ID=Msa1236390-mRNA-1:five_prime_utr;Parent=Msa1236390-mRNA-1
chr8_2 CDS 15297873 15298058 15297873 ID=Msa1236390-mRNA-1:cds;Parent=Msa1236390-mRNA-1
chr8_2 CDS 15299746 15299898 15299746 ID=Msa1236390-mRNA-1:cds;Parent=Msa1236390-mRNA-1
chr8_2 three_prime_UTR 15299899 15300098 15299899 ID=Msa1236390-mRNA-1:three_prime_utr;Parent=Msa1236390-mRNA-1
Gene Sequence

>Msa1236390

ATGGCTAATCTGTATGTCAAAGCTGTGCCACCTGCGGATCTGAACAGGAACACAGAATGGTTTACCTATCCTGGTGTTTGGACAACATATATTCTCATCCTCTTCTTTTCATGGATCATGGTTTTGTCTGTCTTTGGTTGTTCTCCTGGGATTGCTTGGACTATTGTTAATCTCGCTCATTTTCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGATGATCAGGGGATCTACAATAGATTGACATGGTGGGAGCAGGTCGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTTTGACAGTTGTTCCTTTGGTTCTGTAA
Protein sequence

>Msa1236390

MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWIMVLSVFGCSPGIAWTIVNLAHFLVTYHFFHWKKGTPFADDQGIYNRLTWWEQVDNGKQLTRNRKFLTVVPLVL*