Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185330 | AFK35913.1 | 74.815 | 135 | 7 | 1 | 1 | 108 | 90 | 224 | 2.70e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185330 | sp|O64645|SOC1_ARATH | 40.323 | 124 | 44 | 2 | 1 | 97 | 89 | 209 | 3.48e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185330 | Msa1239310 | 0.867378 | 1.430731e-65 | -8.615850e-47 |
| Msa1185330 | Msa1319930 | 0.829642 | 4.591562e-55 | -8.615850e-47 |
| Msa1185330 | Msa1329240 | 0.882258 | 1.211046e-70 | -8.615850e-47 |
| Msa1185330 | Msa1329250 | 0.907432 | 5.100423e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185330 | MtrunA17_Chr8g0351031 | 74.815 | 135 | 7 | 1 | 1 | 108 | 90 | 224 | 2.60e-63 | 191 |
| Msa1185330 | MtrunA17_Chr7g0246431 | 49.180 | 122 | 30 | 4 | 2 | 95 | 90 | 207 | 6.83e-25 | 93.2 |
| Msa1185330 | MtrunA17_Chr8g0351041 | 95.556 | 45 | 2 | 0 | 1 | 45 | 90 | 134 | 1.59e-23 | 88.6 |
| Msa1185330 | MtrunA17_Chr4g0057151 | 40.870 | 115 | 53 | 4 | 1 | 100 | 89 | 203 | 2.06e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185330 | AT2G45660.1 | 40.323 | 124 | 44 | 2 | 1 | 97 | 89 | 209 | 3.53e-18 | 76.3 |
| Msa1185330 | AT2G45660.2 | 73.333 | 45 | 12 | 0 | 1 | 45 | 89 | 133 | 6.30e-16 | 69.3 |
| Msa1185330 | AT5G51870.1 | 39.496 | 119 | 51 | 4 | 1 | 100 | 90 | 206 | 2.47e-14 | 66.2 |
| Msa1185330 | AT5G62165.10 | 37.963 | 108 | 52 | 3 | 1 | 97 | 89 | 192 | 9.18e-14 | 64.3 |
| Msa1185330 | AT5G62165.4 | 37.963 | 108 | 52 | 3 | 1 | 97 | 89 | 192 | 9.18e-14 | 64.3 |
| Msa1185330 | AT4G22950.3 | 37.984 | 129 | 57 | 4 | 1 | 106 | 88 | 216 | 4.34e-13 | 62.8 |
| Msa1185330 | AT4G22950.1 | 37.984 | 129 | 57 | 4 | 1 | 106 | 88 | 216 | 4.34e-13 | 62.8 |
| Msa1185330 | AT5G51870.4 | 35.659 | 129 | 54 | 3 | 1 | 100 | 90 | 218 | 5.29e-13 | 62.8 |
| Msa1185330 | AT5G51870.3 | 35.659 | 129 | 54 | 3 | 1 | 100 | 100 | 228 | 6.81e-13 | 62.4 |
| Msa1185330 | AT5G62165.6 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 1.54e-12 | 60.5 |
| Msa1185330 | AT5G62165.9 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 1.54e-12 | 60.5 |
| Msa1185330 | AT5G62165.7 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 1.54e-12 | 60.5 |
| Msa1185330 | AT5G62165.8 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 1.54e-12 | 60.5 |
| Msa1185330 | AT5G62165.13 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 1.54e-12 | 60.5 |
| Msa1185330 | AT5G62165.17 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 2.03e-12 | 60.1 |
| Msa1185330 | AT5G62165.12 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 2.03e-12 | 60.1 |
| Msa1185330 | AT5G62165.11 | 60.000 | 45 | 18 | 0 | 1 | 45 | 89 | 133 | 2.03e-12 | 60.1 |
| Msa1185330 | AT5G62165.3 | 35.000 | 120 | 53 | 5 | 1 | 97 | 89 | 206 | 3.23e-12 | 60.5 |
| Msa1185330 | AT5G62165.1 | 35.000 | 120 | 53 | 5 | 1 | 97 | 89 | 206 | 3.23e-12 | 60.5 |
| Msa1185330 | AT5G62165.2 | 35.000 | 120 | 53 | 5 | 1 | 97 | 89 | 206 | 3.23e-12 | 60.5 |
| Msa1185330 | AT5G51870.2 | 57.778 | 45 | 19 | 0 | 1 | 45 | 90 | 134 | 2.59e-11 | 57.4 |
| Msa1185330 | AT5G51870.5 | 57.778 | 45 | 19 | 0 | 1 | 45 | 113 | 157 | 5.23e-11 | 57.0 |
| Msa1185330 | AT4G11880.4 | 33.835 | 133 | 58 | 2 | 1 | 106 | 89 | 218 | 9.92e-11 | 56.6 |
| Msa1185330 | AT4G11880.1 | 33.835 | 133 | 58 | 2 | 1 | 106 | 89 | 218 | 9.92e-11 | 56.6 |
Find 20 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCGTCTTGTTCTTGTTTC+TGG | 0.103462 | 8_1:+22397730 | None:intergenic |
| CATACCCTCAGGAAACTCTT+AGG | 0.320734 | 8_1:-22399379 | Msa1185330:intron |
| ACCTTCTTGAGACTTCAAAA+AGG | 0.387138 | 8_1:-22399499 | Msa1185330:intron |
| TCAGTTTCCACATCTGAACT+TGG | 0.431400 | 8_1:+22397769 | None:intergenic |
| GGACTGCTTTGATCTGCATA+AGG | 0.435299 | 8_1:+22397790 | None:intergenic |
| TCCCTAACAAGCTACACCTT+TGG | 0.439290 | 8_1:+22397703 | None:intergenic |
| AAACTCTTAGGAGAAGGTCT+AGG | 0.447821 | 8_1:-22399367 | Msa1185330:CDS |
| GTGGAAACTGAATTGTTCAT+TGG | 0.485974 | 8_1:-22397757 | Msa1185330:CDS |
| CGTCTTGTTCTTGTTTCTGG+AGG | 0.494655 | 8_1:+22397733 | None:intergenic |
| TTATATATTACAGCAATTGA+AGG | 0.502150 | 8_1:-22399552 | None:intergenic |
| ACAAAAGATAGAACAACAGT+TGG | 0.536965 | 8_1:-22399323 | Msa1185330:CDS |
| AACTCTTAGGAGAAGGTCTA+GGG | 0.544433 | 8_1:-22399366 | Msa1185330:CDS |
| AAATGCCATGCTCACGGAGA+AGG | 0.547063 | 8_1:-22398168 | Msa1185330:intron |
| TGCTGAAAATGCCATGCTCA+CGG | 0.570110 | 8_1:-22398174 | Msa1185330:CDS |
| CTCAGGAAACTCTTAGGAGA+AGG | 0.570268 | 8_1:-22399373 | Msa1185330:intron |
| ATTTACCTTCTCCGTGAGCA+TGG | 0.576085 | 8_1:+22398163 | None:intergenic |
| AAGCAGTCCAAGTTCAGATG+TGG | 0.601808 | 8_1:-22397776 | Msa1185330:CDS |
| AACAAGACGCATTTCTCCAA+AGG | 0.605530 | 8_1:-22397719 | Msa1185330:CDS |
| GTATGGTAACTATTCATCAC+AGG | 0.605994 | 8_1:-22397854 | Msa1185330:CDS |
| TTCATCACAGGAAGAAACAA+AGG | 0.613250 | 8_1:-22397842 | Msa1185330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTCTATATAATTTTAAATT+TGG | - | chr8_1:22398005-22398024 | Msa1185330:intron | 10.0% |
| !!! | GTCTATATAATTTTAAATTT+GGG | - | chr8_1:22398006-22398025 | Msa1185330:intron | 10.0% |
| !!! | ATTTTTCTACTTTTTTTTTA+GGG | - | chr8_1:22398901-22398920 | Msa1185330:intron | 10.0% |
| !!! | AGTCTATATAATTTTAAATT+TGG | - | chr8_1:22398005-22398024 | Msa1185330:intron | 10.0% |
| !!! | GTCTATATAATTTTAAATTT+GGG | - | chr8_1:22398006-22398025 | Msa1185330:intron | 10.0% |
| !!! | ATTTTTCTACTTTTTTTTTA+GGG | - | chr8_1:22398901-22398920 | Msa1185330:intron | 10.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8_1:22398494-22398513 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8_1:22398493-22398512 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8_1:22398272-22398291 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8_1:22398403-22398422 | Msa1185330:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8_1:22398493-22398512 | Msa1185330:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8_1:22398494-22398513 | Msa1185330:intron | 15.0% |
| !!! | AATTAACCCTTTAAATTTTA+CGG | - | chr8_1:22398559-22398578 | Msa1185330:intron | 15.0% |
| !! | TATTATCCGTAAAATTTAAA+GGG | + | chr8_1:22398568-22398587 | None:intergenic | 15.0% |
| !! | ATATTATCCGTAAAATTTAA+AGG | + | chr8_1:22398569-22398588 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTATCAATT+AGG | - | chr8_1:22398673-22398692 | Msa1185330:intron | 15.0% |
| !!! | CATTTTTCTACTTTTTTTTT+AGG | - | chr8_1:22398900-22398919 | Msa1185330:intron | 15.0% |
| !!! | TAAAGCTTTTTTTATTTTCT+TGG | + | chr8_1:22398967-22398986 | None:intergenic | 15.0% |
| !!! | AATTATTTTGAATACAATTC+AGG | - | chr8_1:22399043-22399062 | Msa1185330:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8_1:22398494-22398513 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8_1:22398493-22398512 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8_1:22398272-22398291 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8_1:22398403-22398422 | Msa1185330:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8_1:22398493-22398512 | Msa1185330:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8_1:22398494-22398513 | Msa1185330:intron | 15.0% |
| !!! | AATTAACCCTTTAAATTTTA+CGG | - | chr8_1:22398559-22398578 | Msa1185330:intron | 15.0% |
| !! | TATTATCCGTAAAATTTAAA+GGG | + | chr8_1:22398568-22398587 | None:intergenic | 15.0% |
| !! | ATATTATCCGTAAAATTTAA+AGG | + | chr8_1:22398569-22398588 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTATCAATT+AGG | - | chr8_1:22398673-22398692 | Msa1185330:intron | 15.0% |
| !!! | CATTTTTCTACTTTTTTTTT+AGG | - | chr8_1:22398900-22398919 | Msa1185330:intron | 15.0% |
| !!! | TAAAGCTTTTTTTATTTTCT+TGG | + | chr8_1:22398967-22398986 | None:intergenic | 15.0% |
| !!! | AATTATTTTGAATACAATTC+AGG | - | chr8_1:22399043-22399062 | Msa1185330:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8_1:22398142-22398161 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8_1:22398143-22398162 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8_1:22398237-22398256 | None:intergenic | 20.0% |
| !!! | TCAATTTGTTATAAGATTTG+TGG | - | chr8_1:22398836-22398855 | Msa1185330:intron | 20.0% |
| !! | GGAAATTTATGAATGTAAAA+AGG | - | chr8_1:22399213-22399232 | Msa1185330:intron | 20.0% |
| !! | AGCAAAAGTTGAAATAAAAA+CGG | + | chr8_1:22399299-22399318 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8_1:22398142-22398161 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8_1:22398143-22398162 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8_1:22398237-22398256 | None:intergenic | 20.0% |
| !!! | TCAATTTGTTATAAGATTTG+TGG | - | chr8_1:22398836-22398855 | Msa1185330:intron | 20.0% |
| !! | GGAAATTTATGAATGTAAAA+AGG | - | chr8_1:22399213-22399232 | Msa1185330:intron | 20.0% |
| !! | AGCAAAAGTTGAAATAAAAA+CGG | + | chr8_1:22399299-22399318 | None:intergenic | 20.0% |
| !! | TATCTTTTGTAGTTCATCAA+TGG | + | chr8_1:22397920-22397939 | None:intergenic | 25.0% |
| !!! | TATAGACTTGTTGATTTATC+AGG | + | chr8_1:22397993-22398012 | None:intergenic | 25.0% |
| !! | TACAAGGTCACTATTTTATA+GGG | + | chr8_1:22398049-22398068 | None:intergenic | 25.0% |
| !! | TTACAAGGTCACTATTTTAT+AGG | + | chr8_1:22398050-22398069 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8_1:22398109-22398128 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr8_1:22398431-22398450 | Msa1185330:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr8_1:22398432-22398451 | Msa1185330:intron | 25.0% |
| ! | AATTTCTATTATTCAGACTC+AGG | - | chr8_1:22398598-22398617 | Msa1185330:intron | 25.0% |
| ! | TCAATTAGGATCACTTTATT+AGG | - | chr8_1:22398687-22398706 | Msa1185330:intron | 25.0% |
| ! | CAATTAGGATCACTTTATTA+GGG | - | chr8_1:22398688-22398707 | Msa1185330:intron | 25.0% |
| !!! | ACTGTAATGCAATTGATTTT+GGG | + | chr8_1:22398813-22398832 | None:intergenic | 25.0% |
| ! | TTTCAAGATTTCTATGAATC+TGG | + | chr8_1:22399167-22399186 | None:intergenic | 25.0% |
| ! | GAGACGATAAAAAATGAAAA+AGG | + | chr8_1:22399271-22399290 | None:intergenic | 25.0% |
| ! | CAAATCTTTCAACTATAGAA+TGG | - | chr8_1:22399357-22399376 | Msa1185330:CDS | 25.0% |
| !! | TATCTTTTGTAGTTCATCAA+TGG | + | chr8_1:22397920-22397939 | None:intergenic | 25.0% |
| !!! | TATAGACTTGTTGATTTATC+AGG | + | chr8_1:22397993-22398012 | None:intergenic | 25.0% |
| !! | TACAAGGTCACTATTTTATA+GGG | + | chr8_1:22398049-22398068 | None:intergenic | 25.0% |
| !! | TTACAAGGTCACTATTTTAT+AGG | + | chr8_1:22398050-22398069 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8_1:22398109-22398128 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr8_1:22398431-22398450 | Msa1185330:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr8_1:22398432-22398451 | Msa1185330:intron | 25.0% |
| ! | AATTTCTATTATTCAGACTC+AGG | - | chr8_1:22398598-22398617 | Msa1185330:intron | 25.0% |
| ! | TCAATTAGGATCACTTTATT+AGG | - | chr8_1:22398687-22398706 | Msa1185330:intron | 25.0% |
| ! | CAATTAGGATCACTTTATTA+GGG | - | chr8_1:22398688-22398707 | Msa1185330:intron | 25.0% |
| !!! | ACTGTAATGCAATTGATTTT+GGG | + | chr8_1:22398813-22398832 | None:intergenic | 25.0% |
| ! | TTTCAAGATTTCTATGAATC+TGG | + | chr8_1:22399167-22399186 | None:intergenic | 25.0% |
| ! | GAGACGATAAAAAATGAAAA+AGG | + | chr8_1:22399271-22399290 | None:intergenic | 25.0% |
| ! | CAAATCTTTCAACTATAGAA+TGG | - | chr8_1:22399357-22399376 | Msa1185330:CDS | 25.0% |
| ! | AACATAGTCTGTTCTAAGTT+AGG | + | chr8_1:22397841-22397860 | None:intergenic | 30.0% |
| ATTTGTAATTTCATACCCTC+AGG | - | chr8_1:22397863-22397882 | Msa1185330:intron | 30.0% | |
| ACAAAAGATAGAACAACAGT+TGG | - | chr8_1:22397930-22397949 | Msa1185330:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8_1:22398110-22398129 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8_1:22398369-22398388 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8_1:22398524-22398543 | Msa1185330:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8_1:22398525-22398544 | Msa1185330:intron | 30.0% |
| TTAAATAGCAGTCACGATTA+AGG | - | chr8_1:22398713-22398732 | Msa1185330:intron | 30.0% | |
| !! | CACTGTAATGCAATTGATTT+TGG | + | chr8_1:22398814-22398833 | None:intergenic | 30.0% |
| ! | TTTTTGATGTAATGCTAGCT+GGG | + | chr8_1:22399014-22399033 | None:intergenic | 30.0% |
| AGGTAAATTCACTTTCTATC+TGG | - | chr8_1:22399105-22399124 | Msa1185330:intron | 30.0% | |
| TTTGAATGAGCAAATTTAGG+GGG | + | chr8_1:22399140-22399159 | None:intergenic | 30.0% | |
| CTTTGAATGAGCAAATTTAG+GGG | + | chr8_1:22399141-22399160 | None:intergenic | 30.0% | |
| ! | GCTTTGAATGAGCAAATTTA+GGG | + | chr8_1:22399142-22399161 | None:intergenic | 30.0% |
| ! | TGCTTTGAATGAGCAAATTT+AGG | + | chr8_1:22399143-22399162 | None:intergenic | 30.0% |
| AGAAAAAGTTCAAATGACGA+CGG | - | chr8_1:22399192-22399211 | Msa1185330:intron | 30.0% | |
| ! | AACATAGTCTGTTCTAAGTT+AGG | + | chr8_1:22397841-22397860 | None:intergenic | 30.0% |
| ATTTGTAATTTCATACCCTC+AGG | - | chr8_1:22397863-22397882 | Msa1185330:intron | 30.0% | |
| ACAAAAGATAGAACAACAGT+TGG | - | chr8_1:22397930-22397949 | Msa1185330:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8_1:22398110-22398129 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8_1:22398369-22398388 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8_1:22398524-22398543 | Msa1185330:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8_1:22398525-22398544 | Msa1185330:intron | 30.0% |
| TTAAATAGCAGTCACGATTA+AGG | - | chr8_1:22398713-22398732 | Msa1185330:intron | 30.0% | |
| !! | CACTGTAATGCAATTGATTT+TGG | + | chr8_1:22398814-22398833 | None:intergenic | 30.0% |
| ! | TTTTTGATGTAATGCTAGCT+GGG | + | chr8_1:22399014-22399033 | None:intergenic | 30.0% |
| AGGTAAATTCACTTTCTATC+TGG | - | chr8_1:22399105-22399124 | Msa1185330:intron | 30.0% | |
| TTTGAATGAGCAAATTTAGG+GGG | + | chr8_1:22399140-22399159 | None:intergenic | 30.0% | |
| CTTTGAATGAGCAAATTTAG+GGG | + | chr8_1:22399141-22399160 | None:intergenic | 30.0% | |
| ! | GCTTTGAATGAGCAAATTTA+GGG | + | chr8_1:22399142-22399161 | None:intergenic | 30.0% |
| ! | TGCTTTGAATGAGCAAATTT+AGG | + | chr8_1:22399143-22399162 | None:intergenic | 30.0% |
| AGAAAAAGTTCAAATGACGA+CGG | - | chr8_1:22399192-22399211 | Msa1185330:intron | 30.0% | |
| ACCTTCTTGAGACTTCAAAA+AGG | - | chr8_1:22397754-22397773 | Msa1185330:CDS | 35.0% | |
| !!! | ACCTTTTTGAAGTCTCAAGA+AGG | + | chr8_1:22397758-22397777 | None:intergenic | 35.0% |
| AAGCAAAATTCGCGCAAAAA+AGG | - | chr8_1:22397963-22397982 | Msa1185330:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8_1:22398509-22398528 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8_1:22398509-22398528 | Msa1185330:intron | 35.0% | |
| ! | TTATTCAGACTCAGGTTTTC+AGG | - | chr8_1:22398606-22398625 | Msa1185330:intron | 35.0% |
| ! | TATTCAGACTCAGGTTTTCA+GGG | - | chr8_1:22398607-22398626 | Msa1185330:intron | 35.0% |
| AATTGAGCAGCTAAAGGAAA+AGG | - | chr8_1:22398634-22398653 | Msa1185330:intron | 35.0% | |
| GAAAGATGCAATCACAATTG+TGG | + | chr8_1:22398770-22398789 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTAATGCTAGC+TGG | + | chr8_1:22399015-22399034 | None:intergenic | 35.0% |
| TTGAATGAGCAAATTTAGGG+GGG | + | chr8_1:22399139-22399158 | None:intergenic | 35.0% | |
| ACACAAATTTGTGTGCAGTA+TGG | - | chr8_1:22399382-22399401 | Msa1185330:intron | 35.0% | |
| GTATGGTAACTATTCATCAC+AGG | - | chr8_1:22399399-22399418 | Msa1185330:intron | 35.0% | |
| TTCATCACAGGAAGAAACAA+AGG | - | chr8_1:22399411-22399430 | Msa1185330:intron | 35.0% | |
| GTGGAAACTGAATTGTTCAT+TGG | - | chr8_1:22399496-22399515 | Msa1185330:intron | 35.0% | |
| ACCTTCTTGAGACTTCAAAA+AGG | - | chr8_1:22397754-22397773 | Msa1185330:CDS | 35.0% | |
| !!! | ACCTTTTTGAAGTCTCAAGA+AGG | + | chr8_1:22397758-22397777 | None:intergenic | 35.0% |
| AAGCAAAATTCGCGCAAAAA+AGG | - | chr8_1:22397963-22397982 | Msa1185330:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8_1:22398509-22398528 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8_1:22398509-22398528 | Msa1185330:intron | 35.0% | |
| ! | TTATTCAGACTCAGGTTTTC+AGG | - | chr8_1:22398606-22398625 | Msa1185330:intron | 35.0% |
| ! | TATTCAGACTCAGGTTTTCA+GGG | - | chr8_1:22398607-22398626 | Msa1185330:intron | 35.0% |
| AATTGAGCAGCTAAAGGAAA+AGG | - | chr8_1:22398634-22398653 | Msa1185330:intron | 35.0% | |
| GAAAGATGCAATCACAATTG+TGG | + | chr8_1:22398770-22398789 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTAATGCTAGC+TGG | + | chr8_1:22399015-22399034 | None:intergenic | 35.0% |
| TTGAATGAGCAAATTTAGGG+GGG | + | chr8_1:22399139-22399158 | None:intergenic | 35.0% | |
| ACACAAATTTGTGTGCAGTA+TGG | - | chr8_1:22399382-22399401 | Msa1185330:intron | 35.0% | |
| GTATGGTAACTATTCATCAC+AGG | - | chr8_1:22399399-22399418 | Msa1185330:intron | 35.0% | |
| TTCATCACAGGAAGAAACAA+AGG | - | chr8_1:22399411-22399430 | Msa1185330:intron | 35.0% | |
| GTGGAAACTGAATTGTTCAT+TGG | - | chr8_1:22399496-22399515 | Msa1185330:intron | 35.0% | |
| TTCTCCTAAGAGTTTCCTGA+GGG | + | chr8_1:22397881-22397900 | None:intergenic | 40.0% | |
| AAACTCTTAGGAGAAGGTCT+AGG | - | chr8_1:22397886-22397905 | Msa1185330:intron | 40.0% | |
| AACTCTTAGGAGAAGGTCTA+GGG | - | chr8_1:22397887-22397906 | Msa1185330:intron | 40.0% | |
| GGAACAAATTGAGCAGCTAA+AGG | - | chr8_1:22398628-22398647 | Msa1185330:intron | 40.0% | |
| ! | CATGGCATTTTCAGCAACTA+GGG | + | chr8_1:22399075-22399094 | None:intergenic | 40.0% |
| TCAGTTTCCACATCTGAACT+TGG | + | chr8_1:22399487-22399506 | None:intergenic | 40.0% | |
| ! | ATGCGTCTTGTTCTTGTTTC+TGG | + | chr8_1:22399526-22399545 | None:intergenic | 40.0% |
| AACAAGACGCATTTCTCCAA+AGG | - | chr8_1:22399534-22399553 | Msa1185330:CDS | 40.0% | |
| TTCTCCTAAGAGTTTCCTGA+GGG | + | chr8_1:22397881-22397900 | None:intergenic | 40.0% | |
| AAACTCTTAGGAGAAGGTCT+AGG | - | chr8_1:22397886-22397905 | Msa1185330:intron | 40.0% | |
| AACTCTTAGGAGAAGGTCTA+GGG | - | chr8_1:22397887-22397906 | Msa1185330:intron | 40.0% | |
| GGAACAAATTGAGCAGCTAA+AGG | - | chr8_1:22398628-22398647 | Msa1185330:intron | 40.0% | |
| ! | CATGGCATTTTCAGCAACTA+GGG | + | chr8_1:22399075-22399094 | None:intergenic | 40.0% |
| TCAGTTTCCACATCTGAACT+TGG | + | chr8_1:22399487-22399506 | None:intergenic | 40.0% | |
| ! | ATGCGTCTTGTTCTTGTTTC+TGG | + | chr8_1:22399526-22399545 | None:intergenic | 40.0% |
| AACAAGACGCATTTCTCCAA+AGG | - | chr8_1:22399534-22399553 | Msa1185330:CDS | 40.0% | |
| CATACCCTCAGGAAACTCTT+AGG | - | chr8_1:22397874-22397893 | Msa1185330:intron | 45.0% | |
| CTTCTCCTAAGAGTTTCCTG+AGG | + | chr8_1:22397882-22397901 | None:intergenic | 45.0% | |
| CTCAGGAAACTCTTAGGAGA+AGG | - | chr8_1:22397880-22397899 | Msa1185330:intron | 45.0% | |
| ! | GCATGGCATTTTCAGCAACT+AGG | + | chr8_1:22399076-22399095 | None:intergenic | 45.0% |
| TGCTGAAAATGCCATGCTCA+CGG | - | chr8_1:22399079-22399098 | Msa1185330:intron | 45.0% | |
| ATTTACCTTCTCCGTGAGCA+TGG | + | chr8_1:22399093-22399112 | None:intergenic | 45.0% | |
| GGACTGCTTTGATCTGCATA+AGG | + | chr8_1:22399466-22399485 | None:intergenic | 45.0% | |
| AAGCAGTCCAAGTTCAGATG+TGG | - | chr8_1:22399477-22399496 | Msa1185330:intron | 45.0% | |
| !! | CGTCTTGTTCTTGTTTCTGG+AGG | + | chr8_1:22399523-22399542 | None:intergenic | 45.0% |
| CATACCCTCAGGAAACTCTT+AGG | - | chr8_1:22397874-22397893 | Msa1185330:intron | 45.0% | |
| CTTCTCCTAAGAGTTTCCTG+AGG | + | chr8_1:22397882-22397901 | None:intergenic | 45.0% | |
| CTCAGGAAACTCTTAGGAGA+AGG | - | chr8_1:22397880-22397899 | Msa1185330:intron | 45.0% | |
| ! | GCATGGCATTTTCAGCAACT+AGG | + | chr8_1:22399076-22399095 | None:intergenic | 45.0% |
| TGCTGAAAATGCCATGCTCA+CGG | - | chr8_1:22399079-22399098 | Msa1185330:intron | 45.0% | |
| ATTTACCTTCTCCGTGAGCA+TGG | + | chr8_1:22399093-22399112 | None:intergenic | 45.0% | |
| GGACTGCTTTGATCTGCATA+AGG | + | chr8_1:22399466-22399485 | None:intergenic | 45.0% | |
| AAGCAGTCCAAGTTCAGATG+TGG | - | chr8_1:22399477-22399496 | Msa1185330:intron | 45.0% | |
| !! | CGTCTTGTTCTTGTTTCTGG+AGG | + | chr8_1:22399523-22399542 | None:intergenic | 45.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8_1:22398464-22398483 | Msa1185330:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8_1:22398465-22398484 | Msa1185330:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8_1:22398464-22398483 | Msa1185330:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8_1:22398465-22398484 | Msa1185330:intron | 5.0% |
| AAATGCCATGCTCACGGAGA+AGG | - | chr8_1:22399085-22399104 | Msa1185330:intron | 50.0% | |
| AAATGCCATGCTCACGGAGA+AGG | - | chr8_1:22399085-22399104 | Msa1185330:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 22397714 | 22399561 | 22397714 | ID=Msa1185330;Name=Msa1185330 |
| chr8_1 | mRNA | 22397714 | 22399561 | 22397714 | ID=Msa1185330-mRNA-1;Parent=Msa1185330;Name=Msa1185330-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0|0|1|0.66|0.5|4|0|108 |
| chr8_1 | exon | 22399500 | 22399561 | 22399500 | ID=Msa1185330-mRNA-1:exon:8302;Parent=Msa1185330-mRNA-1 |
| chr8_1 | exon | 22399317 | 22399390 | 22399317 | ID=Msa1185330-mRNA-1:exon:8301;Parent=Msa1185330-mRNA-1 |
| chr8_1 | exon | 22398169 | 22398197 | 22398169 | ID=Msa1185330-mRNA-1:exon:8300;Parent=Msa1185330-mRNA-1 |
| chr8_1 | exon | 22397714 | 22397875 | 22397714 | ID=Msa1185330-mRNA-1:exon:8299;Parent=Msa1185330-mRNA-1 |
| chr8_1 | CDS | 22399500 | 22399561 | 22399500 | ID=Msa1185330-mRNA-1:cds;Parent=Msa1185330-mRNA-1 |
| chr8_1 | CDS | 22399317 | 22399390 | 22399317 | ID=Msa1185330-mRNA-1:cds;Parent=Msa1185330-mRNA-1 |
| chr8_1 | CDS | 22398169 | 22398197 | 22398169 | ID=Msa1185330-mRNA-1:cds;Parent=Msa1185330-mRNA-1 |
| chr8_1 | CDS | 22397714 | 22397875 | 22397714 | ID=Msa1185330-mRNA-1:cds;Parent=Msa1185330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
