Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329240 | sp|O64645|SOC1_ARATH | 41.129 | 124 | 43 | 2 | 1 | 97 | 89 | 209 | 7.80e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329240 | I3S6M1 | 75.556 | 135 | 6 | 1 | 1 | 108 | 90 | 224 | 2.80e-60 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1239310 | Msa1329240 | 0.853750 | 1.944336e-61 | -8.615850e-47 |
| Msa1329240 | Msa1329250 | 0.911423 | 6.183258e-83 | -8.615850e-47 |
| Msa1185330 | Msa1329240 | 0.882258 | 1.211046e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329240 | MtrunA17_Chr8g0351031 | 75.556 | 135 | 6 | 1 | 1 | 108 | 90 | 224 | 5.57e-64 | 193 |
| Msa1329240 | MtrunA17_Chr7g0246431 | 50.000 | 122 | 29 | 4 | 2 | 95 | 90 | 207 | 1.66e-25 | 94.7 |
| Msa1329240 | MtrunA17_Chr8g0351041 | 97.778 | 45 | 1 | 0 | 1 | 45 | 90 | 134 | 4.24e-24 | 90.1 |
| Msa1329240 | MtrunA17_Chr4g0057151 | 41.739 | 115 | 52 | 4 | 1 | 100 | 89 | 203 | 6.03e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329240 | AT2G45660.1 | 41.129 | 124 | 43 | 2 | 1 | 97 | 89 | 209 | 7.93e-19 | 78.2 |
| Msa1329240 | AT2G45660.2 | 75.556 | 45 | 11 | 0 | 1 | 45 | 89 | 133 | 1.60e-16 | 70.9 |
| Msa1329240 | AT5G51870.1 | 40.336 | 119 | 50 | 4 | 1 | 100 | 90 | 206 | 5.61e-15 | 67.8 |
| Msa1329240 | AT5G62165.10 | 38.889 | 108 | 51 | 3 | 1 | 97 | 89 | 192 | 2.08e-14 | 66.2 |
| Msa1329240 | AT5G62165.4 | 38.889 | 108 | 51 | 3 | 1 | 97 | 89 | 192 | 2.08e-14 | 66.2 |
| Msa1329240 | AT4G22950.3 | 38.760 | 129 | 56 | 4 | 1 | 106 | 88 | 216 | 9.31e-14 | 64.7 |
| Msa1329240 | AT4G22950.1 | 38.760 | 129 | 56 | 4 | 1 | 106 | 88 | 216 | 9.31e-14 | 64.7 |
| Msa1329240 | AT5G51870.4 | 36.434 | 129 | 53 | 3 | 1 | 100 | 90 | 218 | 1.27e-13 | 64.3 |
| Msa1329240 | AT5G51870.3 | 36.434 | 129 | 53 | 3 | 1 | 100 | 100 | 228 | 1.60e-13 | 64.3 |
| Msa1329240 | AT5G62165.6 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 3.58e-13 | 62.0 |
| Msa1329240 | AT5G62165.9 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 3.58e-13 | 62.0 |
| Msa1329240 | AT5G62165.7 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 3.58e-13 | 62.0 |
| Msa1329240 | AT5G62165.8 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 3.58e-13 | 62.0 |
| Msa1329240 | AT5G62165.13 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 3.58e-13 | 62.0 |
| Msa1329240 | AT5G62165.17 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 5.21e-13 | 61.6 |
| Msa1329240 | AT5G62165.12 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 5.21e-13 | 61.6 |
| Msa1329240 | AT5G62165.11 | 62.222 | 45 | 17 | 0 | 1 | 45 | 89 | 133 | 5.21e-13 | 61.6 |
| Msa1329240 | AT5G62165.3 | 35.833 | 120 | 52 | 5 | 1 | 97 | 89 | 206 | 8.81e-13 | 62.0 |
| Msa1329240 | AT5G62165.1 | 35.833 | 120 | 52 | 5 | 1 | 97 | 89 | 206 | 8.81e-13 | 62.0 |
| Msa1329240 | AT5G62165.2 | 35.833 | 120 | 52 | 5 | 1 | 97 | 89 | 206 | 8.81e-13 | 62.0 |
| Msa1329240 | AT5G51870.2 | 60.000 | 45 | 18 | 0 | 1 | 45 | 90 | 134 | 6.13e-12 | 59.3 |
| Msa1329240 | AT5G51870.5 | 60.000 | 45 | 18 | 0 | 1 | 45 | 113 | 157 | 1.38e-11 | 58.5 |
| Msa1329240 | AT4G11880.4 | 34.586 | 133 | 57 | 2 | 1 | 106 | 89 | 218 | 2.38e-11 | 58.2 |
| Msa1329240 | AT4G11880.1 | 34.586 | 133 | 57 | 2 | 1 | 106 | 89 | 218 | 2.38e-11 | 58.2 |
Find 20 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCGTCTTGTTCTTGTTTC+TGG | 0.103462 | 8_4:+47652836 | None:intergenic |
| CATACCCTCAGGAAACTCTT+AGG | 0.320734 | 8_4:-47654486 | Msa1329240:intron |
| TCAGTTTCCACATCTGAACT+TGG | 0.431400 | 8_4:+47652875 | None:intergenic |
| GGACTGCTTTGATCTGCATA+AGG | 0.435299 | 8_4:+47652896 | None:intergenic |
| TCCCTAACAAGCTACACCTT+TGG | 0.439290 | 8_4:+47652809 | None:intergenic |
| AAACTCTTAGGAGAAGGTCT+AGG | 0.447821 | 8_4:-47654474 | Msa1329240:CDS |
| GTGGAAACTGAATTGTTCAT+TGG | 0.485974 | 8_4:-47652863 | Msa1329240:CDS |
| CGTCTTGTTCTTGTTTCTGG+AGG | 0.494655 | 8_4:+47652839 | None:intergenic |
| TTATATATTACAGCAATTGA+AGG | 0.502150 | 8_4:-47654659 | None:intergenic |
| ACAAAAGATAGAACAACAGT+TGG | 0.536965 | 8_4:-47654430 | Msa1329240:CDS |
| AACTCTTAGGAGAAGGTCTA+GGG | 0.544433 | 8_4:-47654473 | Msa1329240:CDS |
| AAATGCCATGCTCACGGAGA+AGG | 0.547063 | 8_4:-47653275 | Msa1329240:intron |
| TGCTGAAAATGCCATGCTCA+CGG | 0.570110 | 8_4:-47653281 | Msa1329240:CDS |
| CTCAGGAAACTCTTAGGAGA+AGG | 0.570268 | 8_4:-47654480 | Msa1329240:intron |
| ATTTACCTTCTCCGTGAGCA+TGG | 0.576085 | 8_4:+47653270 | None:intergenic |
| AAGCAGTCCAAGTTCAGATG+TGG | 0.601808 | 8_4:-47652882 | Msa1329240:CDS |
| AACAAGACGCATTTCTCCAA+AGG | 0.605530 | 8_4:-47652825 | Msa1329240:CDS |
| GTATGGTAACTATTCATCAC+AGG | 0.605994 | 8_4:-47652960 | Msa1329240:CDS |
| ACCTTCTTGAGACTTCAAAA+CGG | 0.611696 | 8_4:-47654606 | Msa1329240:intron |
| TTCATCACAGGAAGAAACAA+AGG | 0.613250 | 8_4:-47652948 | Msa1329240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCTACTTTTTTTTTA+GGG | - | chr8_4:47654007-47654026 | Msa1329240:intron | 10.0% |
| !!! | ATTTTTCTACTTTTTTTTTA+GGG | - | chr8_4:47654007-47654026 | Msa1329240:intron | 10.0% |
| !!! | AGCCTATATAATTTTAAATT+TGG | - | chr8_4:47653111-47653130 | Msa1329240:intron | 15.0% |
| !!! | GCCTATATAATTTTAAATTT+GGG | - | chr8_4:47653112-47653131 | Msa1329240:intron | 15.0% |
| !!! | ACCCAAATTTAAAATTATAT+AGG | + | chr8_4:47653116-47653135 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8_4:47653600-47653619 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8_4:47653599-47653618 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8_4:47653378-47653397 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8_4:47653509-47653528 | Msa1329240:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8_4:47653599-47653618 | Msa1329240:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8_4:47653600-47653619 | Msa1329240:intron | 15.0% |
| !!! | AATTAACCCTTTAAATTTTA+CGG | - | chr8_4:47653665-47653684 | Msa1329240:intron | 15.0% |
| !! | TATTATCCGTAAAATTTAAA+GGG | + | chr8_4:47653674-47653693 | None:intergenic | 15.0% |
| !! | ATATTATCCGTAAAATTTAA+AGG | + | chr8_4:47653675-47653694 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTATCAATT+AGG | - | chr8_4:47653779-47653798 | Msa1329240:intron | 15.0% |
| !!! | CATTTTTCTACTTTTTTTTT+AGG | - | chr8_4:47654006-47654025 | Msa1329240:intron | 15.0% |
| !!! | TAAAGCTTTTTTTATTTTCT+TGG | + | chr8_4:47654073-47654092 | None:intergenic | 15.0% |
| !!! | AATTATTTTGAATACAATTC+AGG | - | chr8_4:47654149-47654168 | Msa1329240:intron | 15.0% |
| !!! | AGCCTATATAATTTTAAATT+TGG | - | chr8_4:47653111-47653130 | Msa1329240:intron | 15.0% |
| !!! | GCCTATATAATTTTAAATTT+GGG | - | chr8_4:47653112-47653131 | Msa1329240:intron | 15.0% |
| !!! | ACCCAAATTTAAAATTATAT+AGG | + | chr8_4:47653116-47653135 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8_4:47653600-47653619 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8_4:47653599-47653618 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr8_4:47653378-47653397 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr8_4:47653509-47653528 | Msa1329240:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8_4:47653599-47653618 | Msa1329240:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8_4:47653600-47653619 | Msa1329240:intron | 15.0% |
| !!! | AATTAACCCTTTAAATTTTA+CGG | - | chr8_4:47653665-47653684 | Msa1329240:intron | 15.0% |
| !! | TATTATCCGTAAAATTTAAA+GGG | + | chr8_4:47653674-47653693 | None:intergenic | 15.0% |
| !! | ATATTATCCGTAAAATTTAA+AGG | + | chr8_4:47653675-47653694 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTATCAATT+AGG | - | chr8_4:47653779-47653798 | Msa1329240:intron | 15.0% |
| !!! | CATTTTTCTACTTTTTTTTT+AGG | - | chr8_4:47654006-47654025 | Msa1329240:intron | 15.0% |
| !!! | TAAAGCTTTTTTTATTTTCT+TGG | + | chr8_4:47654073-47654092 | None:intergenic | 15.0% |
| !!! | AATTATTTTGAATACAATTC+AGG | - | chr8_4:47654149-47654168 | Msa1329240:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8_4:47653248-47653267 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8_4:47653249-47653268 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8_4:47653343-47653362 | None:intergenic | 20.0% |
| !! | GGAAATTTATGAATGTAAAA+AGG | - | chr8_4:47654319-47654338 | Msa1329240:intron | 20.0% |
| !! | AGACGATAAAAAAATGAAAA+AGG | + | chr8_4:47654377-47654396 | None:intergenic | 20.0% |
| !! | AGCAAAAGTTGAAATAATAA+CGG | + | chr8_4:47654406-47654425 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr8_4:47653248-47653267 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr8_4:47653249-47653268 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | + | chr8_4:47653343-47653362 | None:intergenic | 20.0% |
| !! | GGAAATTTATGAATGTAAAA+AGG | - | chr8_4:47654319-47654338 | Msa1329240:intron | 20.0% |
| !! | AGACGATAAAAAAATGAAAA+AGG | + | chr8_4:47654377-47654396 | None:intergenic | 20.0% |
| !! | AGCAAAAGTTGAAATAATAA+CGG | + | chr8_4:47654406-47654425 | None:intergenic | 20.0% |
| !! | TATCTTTTGTAGTTCATCAA+TGG | + | chr8_4:47653026-47653045 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8_4:47653215-47653234 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+TGG | - | chr8_4:47653538-47653557 | Msa1329240:intron | 25.0% |
| ! | AATTTCTATTATTCAGACTC+AGG | - | chr8_4:47653704-47653723 | Msa1329240:intron | 25.0% |
| ! | TCAATTAGGATCACTTTATT+AGG | - | chr8_4:47653793-47653812 | Msa1329240:intron | 25.0% |
| ! | CAATTAGGATCACTTTATTA+GGG | - | chr8_4:47653794-47653813 | Msa1329240:intron | 25.0% |
| !!! | ACTGTAATGCAATTGATTTT+GGG | + | chr8_4:47653919-47653938 | None:intergenic | 25.0% |
| ! | TTTCAAGATTTCTATGAATC+TGG | + | chr8_4:47654273-47654292 | None:intergenic | 25.0% |
| ! | CAAATCTTTCAACTATAGAA+TGG | - | chr8_4:47654464-47654483 | Msa1329240:CDS | 25.0% |
| !! | TATCTTTTGTAGTTCATCAA+TGG | + | chr8_4:47653026-47653045 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr8_4:47653215-47653234 | None:intergenic | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+TGG | - | chr8_4:47653538-47653557 | Msa1329240:intron | 25.0% |
| ! | AATTTCTATTATTCAGACTC+AGG | - | chr8_4:47653704-47653723 | Msa1329240:intron | 25.0% |
| ! | TCAATTAGGATCACTTTATT+AGG | - | chr8_4:47653793-47653812 | Msa1329240:intron | 25.0% |
| ! | CAATTAGGATCACTTTATTA+GGG | - | chr8_4:47653794-47653813 | Msa1329240:intron | 25.0% |
| !!! | ACTGTAATGCAATTGATTTT+GGG | + | chr8_4:47653919-47653938 | None:intergenic | 25.0% |
| ! | TTTCAAGATTTCTATGAATC+TGG | + | chr8_4:47654273-47654292 | None:intergenic | 25.0% |
| ! | CAAATCTTTCAACTATAGAA+TGG | - | chr8_4:47654464-47654483 | Msa1329240:CDS | 25.0% |
| ! | AACATAGTCTGTTCTAAGTT+AGG | + | chr8_4:47652947-47652966 | None:intergenic | 30.0% |
| ATTTGTAATTTCATACCCTC+AGG | - | chr8_4:47652969-47652988 | Msa1329240:intron | 30.0% | |
| ACAAAAGATAGAACAACAGT+TGG | - | chr8_4:47653036-47653055 | Msa1329240:intron | 30.0% | |
| !! | TATAGGCTTGTTGATTTATC+AGG | + | chr8_4:47653099-47653118 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8_4:47653631-47653650 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8_4:47653630-47653649 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8_4:47653216-47653235 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8_4:47653475-47653494 | None:intergenic | 30.0% | |
| TTAAATAGCAGTCACGATTA+AGG | - | chr8_4:47653819-47653838 | Msa1329240:intron | 30.0% | |
| !! | CACTGTAATGCAATTGATTT+TGG | + | chr8_4:47653920-47653939 | None:intergenic | 30.0% |
| ! | TTTTTGATGTAATGCTAGCT+GGG | + | chr8_4:47654120-47654139 | None:intergenic | 30.0% |
| AGGTAAATTCACTTTCTATC+TGG | - | chr8_4:47654211-47654230 | Msa1329240:intron | 30.0% | |
| TTTGAATGAGCAAATTTAGG+GGG | + | chr8_4:47654246-47654265 | None:intergenic | 30.0% | |
| CTTTGAATGAGCAAATTTAG+GGG | + | chr8_4:47654247-47654266 | None:intergenic | 30.0% | |
| ! | GCTTTGAATGAGCAAATTTA+GGG | + | chr8_4:47654248-47654267 | None:intergenic | 30.0% |
| ! | TGCTTTGAATGAGCAAATTT+AGG | + | chr8_4:47654249-47654268 | None:intergenic | 30.0% |
| AGAAAAAGTTCAAATGACGA+CGG | - | chr8_4:47654298-47654317 | Msa1329240:intron | 30.0% | |
| ! | AACATAGTCTGTTCTAAGTT+AGG | + | chr8_4:47652947-47652966 | None:intergenic | 30.0% |
| ATTTGTAATTTCATACCCTC+AGG | - | chr8_4:47652969-47652988 | Msa1329240:intron | 30.0% | |
| ACAAAAGATAGAACAACAGT+TGG | - | chr8_4:47653036-47653055 | Msa1329240:intron | 30.0% | |
| !! | TATAGGCTTGTTGATTTATC+AGG | + | chr8_4:47653099-47653118 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8_4:47653631-47653650 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8_4:47653630-47653649 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr8_4:47653216-47653235 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr8_4:47653475-47653494 | None:intergenic | 30.0% | |
| TTAAATAGCAGTCACGATTA+AGG | - | chr8_4:47653819-47653838 | Msa1329240:intron | 30.0% | |
| !! | CACTGTAATGCAATTGATTT+TGG | + | chr8_4:47653920-47653939 | None:intergenic | 30.0% |
| ! | TTTTTGATGTAATGCTAGCT+GGG | + | chr8_4:47654120-47654139 | None:intergenic | 30.0% |
| AGGTAAATTCACTTTCTATC+TGG | - | chr8_4:47654211-47654230 | Msa1329240:intron | 30.0% | |
| TTTGAATGAGCAAATTTAGG+GGG | + | chr8_4:47654246-47654265 | None:intergenic | 30.0% | |
| CTTTGAATGAGCAAATTTAG+GGG | + | chr8_4:47654247-47654266 | None:intergenic | 30.0% | |
| ! | GCTTTGAATGAGCAAATTTA+GGG | + | chr8_4:47654248-47654267 | None:intergenic | 30.0% |
| ! | TGCTTTGAATGAGCAAATTT+AGG | + | chr8_4:47654249-47654268 | None:intergenic | 30.0% |
| AGAAAAAGTTCAAATGACGA+CGG | - | chr8_4:47654298-47654317 | Msa1329240:intron | 30.0% | |
| ACCTTCTTGAGACTTCAAAA+CGG | - | chr8_4:47652860-47652879 | Msa1329240:CDS | 35.0% | |
| AAGCAAAATTCGCGCAAAAA+AGG | - | chr8_4:47653069-47653088 | Msa1329240:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8_4:47653615-47653634 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8_4:47653615-47653634 | Msa1329240:intron | 35.0% | |
| ! | TTATTCAGACTCAGGTTTTC+AGG | - | chr8_4:47653712-47653731 | Msa1329240:intron | 35.0% |
| ! | TATTCAGACTCAGGTTTTCA+GGG | - | chr8_4:47653713-47653732 | Msa1329240:intron | 35.0% |
| AATTGAGCAGCTAATGGAAA+AGG | - | chr8_4:47653740-47653759 | Msa1329240:intron | 35.0% | |
| GAAAGATGCAATCACAATTG+TGG | + | chr8_4:47653876-47653895 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTAATGCTAGC+TGG | + | chr8_4:47654121-47654140 | None:intergenic | 35.0% |
| TTGAATGAGCAAATTTAGGG+GGG | + | chr8_4:47654245-47654264 | None:intergenic | 35.0% | |
| ACACAAATTTGTGTGCAGTA+TGG | - | chr8_4:47654489-47654508 | Msa1329240:intron | 35.0% | |
| GTATGGTAACTATTCATCAC+AGG | - | chr8_4:47654506-47654525 | Msa1329240:intron | 35.0% | |
| TTCATCACAGGAAGAAACAA+AGG | - | chr8_4:47654518-47654537 | Msa1329240:intron | 35.0% | |
| GTGGAAACTGAATTGTTCAT+TGG | - | chr8_4:47654603-47654622 | Msa1329240:intron | 35.0% | |
| ACCTTCTTGAGACTTCAAAA+CGG | - | chr8_4:47652860-47652879 | Msa1329240:CDS | 35.0% | |
| AAGCAAAATTCGCGCAAAAA+AGG | - | chr8_4:47653069-47653088 | Msa1329240:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8_4:47653615-47653634 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8_4:47653615-47653634 | Msa1329240:intron | 35.0% | |
| ! | TTATTCAGACTCAGGTTTTC+AGG | - | chr8_4:47653712-47653731 | Msa1329240:intron | 35.0% |
| ! | TATTCAGACTCAGGTTTTCA+GGG | - | chr8_4:47653713-47653732 | Msa1329240:intron | 35.0% |
| AATTGAGCAGCTAATGGAAA+AGG | - | chr8_4:47653740-47653759 | Msa1329240:intron | 35.0% | |
| GAAAGATGCAATCACAATTG+TGG | + | chr8_4:47653876-47653895 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTAATGCTAGC+TGG | + | chr8_4:47654121-47654140 | None:intergenic | 35.0% |
| TTGAATGAGCAAATTTAGGG+GGG | + | chr8_4:47654245-47654264 | None:intergenic | 35.0% | |
| ACACAAATTTGTGTGCAGTA+TGG | - | chr8_4:47654489-47654508 | Msa1329240:intron | 35.0% | |
| GTATGGTAACTATTCATCAC+AGG | - | chr8_4:47654506-47654525 | Msa1329240:intron | 35.0% | |
| TTCATCACAGGAAGAAACAA+AGG | - | chr8_4:47654518-47654537 | Msa1329240:intron | 35.0% | |
| GTGGAAACTGAATTGTTCAT+TGG | - | chr8_4:47654603-47654622 | Msa1329240:intron | 35.0% | |
| !!! | ACCGTTTTGAAGTCTCAAGA+AGG | + | chr8_4:47652864-47652883 | None:intergenic | 40.0% |
| TTCTCCTAAGAGTTTCCTGA+GGG | + | chr8_4:47652987-47653006 | None:intergenic | 40.0% | |
| AAACTCTTAGGAGAAGGTCT+AGG | - | chr8_4:47652992-47653011 | Msa1329240:intron | 40.0% | |
| AACTCTTAGGAGAAGGTCTA+GGG | - | chr8_4:47652993-47653012 | Msa1329240:intron | 40.0% | |
| GGAACAAATTGAGCAGCTAA+TGG | - | chr8_4:47653734-47653753 | Msa1329240:intron | 40.0% | |
| ! | CATGGCATTTTCAGCAACTA+GGG | + | chr8_4:47654181-47654200 | None:intergenic | 40.0% |
| TCAGTTTCCACATCTGAACT+TGG | + | chr8_4:47654594-47654613 | None:intergenic | 40.0% | |
| ! | ATGCGTCTTGTTCTTGTTTC+TGG | + | chr8_4:47654633-47654652 | None:intergenic | 40.0% |
| AACAAGACGCATTTCTCCAA+AGG | - | chr8_4:47654641-47654660 | Msa1329240:CDS | 40.0% | |
| !!! | ACCGTTTTGAAGTCTCAAGA+AGG | + | chr8_4:47652864-47652883 | None:intergenic | 40.0% |
| TTCTCCTAAGAGTTTCCTGA+GGG | + | chr8_4:47652987-47653006 | None:intergenic | 40.0% | |
| AAACTCTTAGGAGAAGGTCT+AGG | - | chr8_4:47652992-47653011 | Msa1329240:intron | 40.0% | |
| AACTCTTAGGAGAAGGTCTA+GGG | - | chr8_4:47652993-47653012 | Msa1329240:intron | 40.0% | |
| GGAACAAATTGAGCAGCTAA+TGG | - | chr8_4:47653734-47653753 | Msa1329240:intron | 40.0% | |
| ! | CATGGCATTTTCAGCAACTA+GGG | + | chr8_4:47654181-47654200 | None:intergenic | 40.0% |
| TCAGTTTCCACATCTGAACT+TGG | + | chr8_4:47654594-47654613 | None:intergenic | 40.0% | |
| ! | ATGCGTCTTGTTCTTGTTTC+TGG | + | chr8_4:47654633-47654652 | None:intergenic | 40.0% |
| AACAAGACGCATTTCTCCAA+AGG | - | chr8_4:47654641-47654660 | Msa1329240:CDS | 40.0% | |
| CATACCCTCAGGAAACTCTT+AGG | - | chr8_4:47652980-47652999 | Msa1329240:intron | 45.0% | |
| CTTCTCCTAAGAGTTTCCTG+AGG | + | chr8_4:47652988-47653007 | None:intergenic | 45.0% | |
| CTCAGGAAACTCTTAGGAGA+AGG | - | chr8_4:47652986-47653005 | Msa1329240:intron | 45.0% | |
| ! | GCATGGCATTTTCAGCAACT+AGG | + | chr8_4:47654182-47654201 | None:intergenic | 45.0% |
| TGCTGAAAATGCCATGCTCA+CGG | - | chr8_4:47654185-47654204 | Msa1329240:intron | 45.0% | |
| ATTTACCTTCTCCGTGAGCA+TGG | + | chr8_4:47654199-47654218 | None:intergenic | 45.0% | |
| GGACTGCTTTGATCTGCATA+AGG | + | chr8_4:47654573-47654592 | None:intergenic | 45.0% | |
| AAGCAGTCCAAGTTCAGATG+TGG | - | chr8_4:47654584-47654603 | Msa1329240:intron | 45.0% | |
| !! | CGTCTTGTTCTTGTTTCTGG+AGG | + | chr8_4:47654630-47654649 | None:intergenic | 45.0% |
| CATACCCTCAGGAAACTCTT+AGG | - | chr8_4:47652980-47652999 | Msa1329240:intron | 45.0% | |
| CTTCTCCTAAGAGTTTCCTG+AGG | + | chr8_4:47652988-47653007 | None:intergenic | 45.0% | |
| CTCAGGAAACTCTTAGGAGA+AGG | - | chr8_4:47652986-47653005 | Msa1329240:intron | 45.0% | |
| ! | GCATGGCATTTTCAGCAACT+AGG | + | chr8_4:47654182-47654201 | None:intergenic | 45.0% |
| TGCTGAAAATGCCATGCTCA+CGG | - | chr8_4:47654185-47654204 | Msa1329240:intron | 45.0% | |
| ATTTACCTTCTCCGTGAGCA+TGG | + | chr8_4:47654199-47654218 | None:intergenic | 45.0% | |
| GGACTGCTTTGATCTGCATA+AGG | + | chr8_4:47654573-47654592 | None:intergenic | 45.0% | |
| AAGCAGTCCAAGTTCAGATG+TGG | - | chr8_4:47654584-47654603 | Msa1329240:intron | 45.0% | |
| !! | CGTCTTGTTCTTGTTTCTGG+AGG | + | chr8_4:47654630-47654649 | None:intergenic | 45.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8_4:47653570-47653589 | Msa1329240:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8_4:47653571-47653590 | Msa1329240:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | chr8_4:47653570-47653589 | Msa1329240:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | chr8_4:47653571-47653590 | Msa1329240:intron | 5.0% |
| AAATGCCATGCTCACGGAGA+AGG | - | chr8_4:47654191-47654210 | Msa1329240:intron | 50.0% | |
| AAATGCCATGCTCACGGAGA+AGG | - | chr8_4:47654191-47654210 | Msa1329240:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 47652820 | 47654668 | 47652820 | ID=Msa1329240;Name=Msa1329240 |
| chr8_4 | mRNA | 47652820 | 47654668 | 47652820 | ID=Msa1329240-mRNA-1;Parent=Msa1329240;Name=Msa1329240-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.33|0|1|0.66|0.5|4|0|108 |
| chr8_4 | exon | 47654607 | 47654668 | 47654607 | ID=Msa1329240-mRNA-1:exon:13659;Parent=Msa1329240-mRNA-1 |
| chr8_4 | exon | 47654424 | 47654497 | 47654424 | ID=Msa1329240-mRNA-1:exon:13658;Parent=Msa1329240-mRNA-1 |
| chr8_4 | exon | 47653276 | 47653304 | 47653276 | ID=Msa1329240-mRNA-1:exon:13657;Parent=Msa1329240-mRNA-1 |
| chr8_4 | exon | 47652820 | 47652981 | 47652820 | ID=Msa1329240-mRNA-1:exon:13656;Parent=Msa1329240-mRNA-1 |
| chr8_4 | CDS | 47654607 | 47654668 | 47654607 | ID=Msa1329240-mRNA-1:cds;Parent=Msa1329240-mRNA-1 |
| chr8_4 | CDS | 47654424 | 47654497 | 47654424 | ID=Msa1329240-mRNA-1:cds;Parent=Msa1329240-mRNA-1 |
| chr8_4 | CDS | 47653276 | 47653304 | 47653276 | ID=Msa1329240-mRNA-1:cds;Parent=Msa1329240-mRNA-1 |
| chr8_4 | CDS | 47652820 | 47652981 | 47652820 | ID=Msa1329240-mRNA-1:cds;Parent=Msa1329240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
