Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185860 | XP_024628367.1 | 92.857 | 294 | 8 | 2 | 1 | 281 | 35 | 328 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185860 | sp|Q9SVY1|ZWIP2_ARATH | 62.449 | 245 | 50 | 4 | 77 | 280 | 122 | 365 | 6.83e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1185860 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185860 | Msa1307510 | 0.986117 | 9.966509e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185860 | MtrunA17_Chr8g0352011 | 92.857 | 294 | 8 | 2 | 1 | 281 | 35 | 328 | 0.0 | 513 |
| Msa1185860 | MtrunA17_Chr1g0173841 | 58.042 | 286 | 94 | 3 | 20 | 280 | 92 | 376 | 1.46e-113 | 332 |
| Msa1185860 | MtrunA17_Chr7g0258011 | 59.786 | 281 | 84 | 5 | 20 | 280 | 66 | 337 | 2.78e-110 | 322 |
| Msa1185860 | MtrunA17_Chr2g0328921 | 61.905 | 273 | 75 | 8 | 21 | 280 | 44 | 300 | 7.50e-108 | 315 |
| Msa1185860 | MtrunA17_Chr2g0321291 | 59.292 | 226 | 63 | 4 | 62 | 267 | 65 | 281 | 1.11e-90 | 271 |
| Msa1185860 | MtrunA17_Chr5g0422571 | 58.744 | 223 | 60 | 6 | 72 | 279 | 57 | 262 | 9.32e-89 | 266 |
| Msa1185860 | MtrunA17_Chr4g0026521 | 63.184 | 201 | 52 | 2 | 79 | 267 | 76 | 266 | 1.77e-88 | 265 |
| Msa1185860 | MtrunA17_Chr4g0053341 | 57.563 | 238 | 62 | 5 | 45 | 270 | 15 | 225 | 1.44e-84 | 253 |
| Msa1185860 | MtrunA17_Chr1g0198651 | 66.871 | 163 | 39 | 2 | 128 | 275 | 99 | 261 | 8.75e-80 | 243 |
| Msa1185860 | MtrunA17_Chr1g0200421 | 36.552 | 145 | 71 | 4 | 138 | 263 | 245 | 387 | 2.48e-19 | 87.4 |
| Msa1185860 | MtrunA17_Chr1g0151351 | 36.496 | 137 | 74 | 5 | 136 | 263 | 62 | 194 | 2.57e-18 | 84.3 |
| Msa1185860 | MtrunA17_Chr1g0191991 | 35.393 | 178 | 87 | 8 | 117 | 279 | 59 | 223 | 9.13e-18 | 82.8 |
| Msa1185860 | MtrunA17_Chr7g0268961 | 33.742 | 163 | 80 | 8 | 132 | 279 | 33 | 182 | 1.07e-17 | 82.8 |
| Msa1185860 | MtrunA17_Chr1g0162971 | 37.313 | 134 | 72 | 4 | 138 | 263 | 64 | 193 | 1.22e-17 | 82.4 |
| Msa1185860 | MtrunA17_Chr4g0029521 | 37.037 | 135 | 72 | 5 | 138 | 263 | 61 | 191 | 1.35e-17 | 82.4 |
| Msa1185860 | MtrunA17_Chr1g0210821 | 36.170 | 141 | 78 | 4 | 131 | 263 | 60 | 196 | 1.75e-17 | 82.0 |
| Msa1185860 | MtrunA17_Chr1g0199101 | 35.461 | 141 | 79 | 4 | 131 | 263 | 63 | 199 | 1.83e-17 | 82.0 |
| Msa1185860 | MtrunA17_Chr1g0163001 | 35.461 | 141 | 79 | 4 | 131 | 263 | 59 | 195 | 3.31e-17 | 81.3 |
| Msa1185860 | MtrunA17_Chr1g0185121 | 36.496 | 137 | 74 | 5 | 136 | 263 | 61 | 193 | 3.39e-17 | 80.9 |
| Msa1185860 | MtrunA17_Chr8g0342421 | 36.296 | 135 | 72 | 6 | 138 | 263 | 85 | 214 | 3.40e-17 | 81.3 |
| Msa1185860 | MtrunA17_Chr2g0326381 | 36.567 | 134 | 74 | 4 | 138 | 263 | 55 | 185 | 3.90e-17 | 80.9 |
| Msa1185860 | MtrunA17_Chr2g0320341 | 35.570 | 149 | 76 | 6 | 138 | 267 | 238 | 385 | 4.39e-17 | 80.5 |
| Msa1185860 | MtrunA17_Chr2g0330171 | 34.043 | 141 | 81 | 4 | 131 | 263 | 62 | 198 | 1.02e-16 | 79.7 |
| Msa1185860 | MtrunA17_Chr1g0181381 | 33.824 | 136 | 79 | 4 | 136 | 263 | 59 | 191 | 3.17e-16 | 78.2 |
| Msa1185860 | MtrunA17_Chr7g0263941 | 34.752 | 141 | 80 | 4 | 131 | 263 | 50 | 186 | 3.96e-16 | 77.8 |
| Msa1185860 | MtrunA17_Chr8g0373541 | 33.333 | 150 | 80 | 5 | 138 | 279 | 56 | 193 | 7.92e-16 | 77.0 |
| Msa1185860 | MtrunA17_Chr2g0324991 | 35.036 | 137 | 77 | 5 | 131 | 258 | 8 | 141 | 1.98e-15 | 72.0 |
| Msa1185860 | MtrunA17_Chr4g0040571 | 33.333 | 141 | 82 | 4 | 131 | 263 | 55 | 191 | 3.71e-15 | 75.1 |
| Msa1185860 | MtrunA17_Chr8g0382121 | 34.328 | 134 | 72 | 4 | 146 | 263 | 127 | 260 | 1.52e-13 | 69.7 |
| Msa1185860 | MtrunA17_Chr3g0141431 | 33.083 | 133 | 77 | 4 | 136 | 259 | 43 | 172 | 2.11e-13 | 69.7 |
| Msa1185860 | MtrunA17_Chr3g0123941 | 34.228 | 149 | 80 | 6 | 146 | 281 | 139 | 282 | 2.13e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185860 | AT3G57670.1 | 62.449 | 245 | 50 | 4 | 77 | 280 | 122 | 365 | 6.94e-104 | 308 |
| Msa1185860 | AT1G51220.1 | 53.584 | 293 | 97 | 5 | 10 | 280 | 51 | 326 | 1.32e-100 | 298 |
| Msa1185860 | AT3G20880.1 | 53.741 | 294 | 98 | 7 | 14 | 278 | 119 | 403 | 5.82e-98 | 293 |
| Msa1185860 | AT1G08290.1 | 50.000 | 272 | 103 | 6 | 40 | 280 | 63 | 332 | 5.15e-84 | 255 |
| Msa1185860 | AT1G13290.1 | 59.524 | 210 | 51 | 5 | 77 | 272 | 54 | 243 | 2.02e-83 | 253 |
| Msa1185860 | AT1G34790.1 | 59.070 | 215 | 69 | 4 | 77 | 278 | 83 | 291 | 9.57e-82 | 248 |
| Msa1185860 | AT1G34370.2 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.16e-18 | 85.9 |
| Msa1185860 | AT1G34370.1 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.16e-18 | 85.9 |
| Msa1185860 | AT1G55110.3 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1185860 | AT1G55110.1 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1185860 | AT1G55110.2 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1185860 | AT1G34370.3 | 34.694 | 147 | 73 | 4 | 138 | 263 | 28 | 172 | 1.67e-18 | 83.6 |
| Msa1185860 | AT5G22890.1 | 36.913 | 149 | 74 | 6 | 138 | 267 | 211 | 358 | 6.46e-18 | 83.2 |
| Msa1185860 | AT2G02080.1 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1185860 | AT2G02080.4 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1185860 | AT2G02080.5 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1185860 | AT2G02080.3 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1185860 | AT2G02070.2 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.04e-17 | 83.2 |
| Msa1185860 | AT2G02070.1 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.04e-17 | 83.2 |
| Msa1185860 | AT5G03150.1 | 35.821 | 134 | 75 | 4 | 138 | 263 | 76 | 206 | 1.59e-17 | 82.4 |
| Msa1185860 | AT1G14580.3 | 36.170 | 141 | 78 | 4 | 131 | 263 | 83 | 219 | 2.65e-17 | 82.0 |
| Msa1185860 | AT1G14580.1 | 36.170 | 141 | 78 | 4 | 131 | 263 | 69 | 205 | 2.71e-17 | 81.6 |
| Msa1185860 | AT1G14580.2 | 36.170 | 141 | 78 | 4 | 131 | 263 | 69 | 205 | 2.71e-17 | 81.6 |
| Msa1185860 | AT2G02080.6 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 3.51e-17 | 81.3 |
| Msa1185860 | AT2G02080.2 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 3.51e-17 | 81.3 |
| Msa1185860 | AT5G66730.1 | 35.766 | 137 | 74 | 6 | 136 | 263 | 53 | 184 | 2.74e-16 | 79.0 |
| Msa1185860 | AT3G45260.2 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.11e-16 | 77.8 |
| Msa1185860 | AT3G45260.1 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.11e-16 | 77.8 |
| Msa1185860 | AT1G03840.1 | 34.043 | 141 | 81 | 5 | 131 | 263 | 57 | 193 | 8.83e-16 | 77.4 |
| Msa1185860 | AT1G03840.2 | 34.043 | 141 | 81 | 5 | 131 | 263 | 55 | 191 | 8.89e-16 | 77.4 |
| Msa1185860 | AT5G60470.1 | 35.115 | 131 | 73 | 4 | 138 | 259 | 58 | 185 | 9.33e-16 | 77.4 |
| Msa1185860 | AT5G44160.2 | 35.075 | 134 | 75 | 4 | 138 | 263 | 21 | 150 | 9.53e-16 | 77.0 |
| Msa1185860 | AT5G44160.1 | 35.075 | 134 | 75 | 4 | 138 | 263 | 60 | 189 | 9.76e-16 | 77.4 |
| Msa1185860 | AT5G60470.2 | 35.115 | 131 | 73 | 4 | 138 | 259 | 67 | 194 | 1.14e-15 | 77.0 |
| Msa1185860 | AT5G60470.3 | 35.115 | 131 | 73 | 4 | 138 | 259 | 63 | 190 | 1.25e-15 | 77.0 |
| Msa1185860 | AT3G13810.4 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.71e-15 | 75.1 |
| Msa1185860 | AT3G13810.1 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.71e-15 | 75.1 |
| Msa1185860 | AT3G13810.2 | 33.803 | 142 | 81 | 5 | 131 | 263 | 87 | 224 | 6.22e-15 | 75.1 |
| Msa1185860 | AT3G13810.5 | 33.803 | 142 | 81 | 5 | 131 | 263 | 81 | 218 | 7.10e-15 | 74.7 |
| Msa1185860 | AT3G13810.3 | 33.803 | 142 | 81 | 5 | 131 | 263 | 73 | 210 | 7.43e-15 | 74.7 |
| Msa1185860 | AT4G02670.2 | 33.803 | 142 | 81 | 6 | 131 | 263 | 71 | 208 | 7.45e-15 | 74.3 |
| Msa1185860 | AT4G02670.1 | 33.803 | 142 | 81 | 6 | 131 | 263 | 69 | 206 | 8.05e-15 | 74.3 |
| Msa1185860 | AT3G13810.6 | 33.803 | 142 | 81 | 5 | 131 | 263 | 67 | 204 | 8.09e-15 | 74.7 |
| Msa1185860 | AT3G50700.1 | 32.237 | 152 | 83 | 5 | 136 | 279 | 55 | 194 | 1.71e-14 | 73.6 |
Find 58 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGTTGCACTACAAAT+AGG | 0.241591 | 8_1:-23557124 | Msa1185860:CDS |
| AGTAATTCTTCTTCTGATCT+TGG | 0.279002 | 8_1:-23557094 | Msa1185860:CDS |
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8_1:-23554733 | Msa1185860:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8_1:-23554748 | Msa1185860:CDS |
| AGGAGGAGAAGGAGGATTCA+TGG | 0.322930 | 8_1:+23557318 | None:intergenic |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8_1:-23554819 | Msa1185860:CDS |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8_1:-23555045 | Msa1185860:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8_1:-23554754 | Msa1185860:CDS |
| GATTTCTGAGCAACAACCTT+TGG | 0.368710 | 8_1:-23557014 | Msa1185860:CDS |
| AGGATTCATGGTGGAGGATG+AGG | 0.378060 | 8_1:+23557330 | None:intergenic |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8_1:+23554749 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8_1:-23557059 | Msa1185860:CDS |
| TTACTGTTGCACTACAAATA+GGG | 0.402089 | 8_1:-23557123 | Msa1185860:CDS |
| CTTCTTCTGATCTTGGATCA+AGG | 0.402872 | 8_1:-23557087 | Msa1185860:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8_1:-23556894 | Msa1185860:intron |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8_1:-23554852 | Msa1185860:CDS |
| CATGGTGGAGGATGAGGAGG+AGG | 0.440334 | 8_1:+23557336 | None:intergenic |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8_1:-23556956 | Msa1185860:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.446866 | 8_1:-23556985 | Msa1185860:CDS |
| TGAATTAGAAGACAAGAGAA+TGG | 0.451445 | 8_1:-23557197 | Msa1185860:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8_1:-23554994 | Msa1185860:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8_1:-23554742 | Msa1185860:CDS |
| TTTGTTGTTGATGATTTATG+AGG | 0.483129 | 8_1:+23557260 | None:intergenic |
| TTCTGATCTTGGATCAAGGA+TGG | 0.488172 | 8_1:-23557083 | Msa1185860:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8_1:+23554953 | None:intergenic |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8_1:+23554949 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8_1:+23556959 | None:intergenic |
| AGAAGGAGGATTCATGGTGG+AGG | 0.523835 | 8_1:+23557324 | None:intergenic |
| AGAGGAAGAGCTTCTCTAAG+AGG | 0.528799 | 8_1:+23557298 | None:intergenic |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8_1:-23554880 | Msa1185860:CDS |
| ATTCATGGTGGAGGATGAGG+AGG | 0.531814 | 8_1:+23557333 | None:intergenic |
| AGATCAGAAGAAGAATTACT+AGG | 0.534223 | 8_1:+23557097 | None:intergenic |
| TTGTTGTTCAATTTATCCAA+AGG | 0.534250 | 8_1:+23556998 | None:intergenic |
| AGGCTTAGTTTGTTAATGAG+AGG | 0.538138 | 8_1:+23557280 | None:intergenic |
| GCTTCTCTAAGAGGAGGAGA+AGG | 0.538140 | 8_1:+23557307 | None:intergenic |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8_1:-23554700 | None:intergenic |
| GACAAGAGAATGGAAAGGCA+TGG | 0.561442 | 8_1:-23557187 | Msa1185860:CDS |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8_1:-23554699 | None:intergenic |
| AGGAGAAGGAGGATTCATGG+TGG | 0.564100 | 8_1:+23557321 | None:intergenic |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8_1:-23554910 | Msa1185860:CDS |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8_1:+23555015 | None:intergenic |
| TCTCTAAGAGGAGGAGAAGG+AGG | 0.574547 | 8_1:+23557310 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8_1:-23555020 | Msa1185860:CDS |
| ATGGTGGAGGATGAGGAGGA+GGG | 0.583723 | 8_1:+23557337 | None:intergenic |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8_1:+23554937 | None:intergenic |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8_1:-23554805 | Msa1185860:CDS |
| TAGAAGACAAGAGAATGGAA+AGG | 0.616360 | 8_1:-23557192 | Msa1185860:CDS |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8_1:-23554859 | Msa1185860:CDS |
| TTGGATAAATTGAACAACAA+GGG | 0.616704 | 8_1:-23556995 | Msa1185860:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8_1:-23554829 | Msa1185860:CDS |
| GGAAGAGCTTCTCTAAGAGG+AGG | 0.638851 | 8_1:+23557301 | None:intergenic |
| TCAATGTTATGCTTGCAACC+TGG | 0.646006 | 8_1:+23554976 | None:intergenic |
| GGGTTGATGATGAAACATGT+TGG | 0.646858 | 8_1:+23557357 | None:intergenic |
| TTTGGATAAATTGAACAACA+AGG | 0.660452 | 8_1:-23556996 | Msa1185860:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8_1:+23554738 | None:intergenic |
| ACAGGACAAGAGAATTGCGT+AGG | 0.670453 | 8_1:+23556932 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8_1:+23554994 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.690488 | 8_1:+23556953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATATATATAATTTTGAA+TGG | + | chr8_1:23555750-23555769 | None:intergenic | 10.0% |
| !! | CATTCAAAATTATATATATA+TGG | - | chr8_1:23555748-23555767 | Msa1185860:intron | 10.0% |
| !! | CTTAATTATACTTAAATTAT+TGG | + | chr8_1:23555805-23555824 | None:intergenic | 10.0% |
| !!! | TTCTTTATTTACTTTTTTTT+TGG | - | chr8_1:23556043-23556062 | Msa1185860:intron | 10.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | + | chr8_1:23555333-23555352 | None:intergenic | 15.0% |
| !!! | CATTTTCTTTTCTAAATTTA+GGG | + | chr8_1:23555334-23555353 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTTTCTAAATTT+AGG | + | chr8_1:23555335-23555354 | None:intergenic | 15.0% |
| !!! | AAAATGTAATTAATTTTGTG+TGG | - | chr8_1:23556760-23556779 | Msa1185860:intron | 15.0% |
| !! | TGATATATTTAAGAGAAATT+AGG | - | chr8_1:23556827-23556846 | Msa1185860:intron | 15.0% |
| !! | GATATATTTAAGAGAAATTA+GGG | - | chr8_1:23556828-23556847 | Msa1185860:intron | 15.0% |
| !! | TGAGTATTAAAAATGTTTGA+GGG | + | chr8_1:23554843-23554862 | None:intergenic | 20.0% |
| !! | TTGAGTATTAAAAATGTTTG+AGG | + | chr8_1:23554844-23554863 | None:intergenic | 20.0% |
| !! | AAAAAACAGAAGTAAAAACA+TGG | + | chr8_1:23555289-23555308 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAACATGCAAAA+GGG | + | chr8_1:23555410-23555429 | None:intergenic | 20.0% |
| !!! | GTTATTTGAAACTAACAAAA+AGG | + | chr8_1:23555432-23555451 | None:intergenic | 20.0% |
| !!! | TATAATTTTGAATGGCTTAA+AGG | + | chr8_1:23555742-23555761 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | + | chr8_1:23555858-23555877 | None:intergenic | 20.0% |
| !!! | AATAGAAAACCAAGTATTTT+TGG | + | chr8_1:23555986-23556005 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTTTCTTTTGTT+AGG | - | chr8_1:23556074-23556093 | Msa1185860:intron | 20.0% |
| !!! | TTTGTTACTTTCTTTTGTTA+GGG | - | chr8_1:23556075-23556094 | Msa1185860:intron | 20.0% |
| !! | AAGATGCATATAAAAATTCA+AGG | + | chr8_1:23556119-23556138 | None:intergenic | 20.0% |
| !! | ATTACGATGAGTATATATTT+AGG | + | chr8_1:23556161-23556180 | None:intergenic | 20.0% |
| !! | TTGAAACTAATGTACAAATT+TGG | + | chr8_1:23556220-23556239 | None:intergenic | 20.0% |
| !!! | ATTTCTAGAAATAACAAAAC+TGG | - | chr8_1:23556402-23556421 | Msa1185860:intron | 20.0% |
| !! | ACTAGTTATTCCATTTATAT+AGG | - | chr8_1:23556659-23556678 | Msa1185860:intron | 20.0% |
| !! | TTATTCCATTTATATAGGTT+CGG | - | chr8_1:23556664-23556683 | Msa1185860:intron | 20.0% |
| !!! | TTTGTTGTTGATGATTTATG+AGG | + | chr8_1:23554815-23554834 | None:intergenic | 25.0% |
| !! | TTGTTGTTCAATTTATCCAA+AGG | + | chr8_1:23555077-23555096 | None:intergenic | 25.0% |
| ! | TTTGGATAAATTGAACAACA+AGG | - | chr8_1:23555076-23555095 | Msa1185860:intron | 25.0% |
| ! | TTGGATAAATTGAACAACAA+GGG | - | chr8_1:23555077-23555096 | Msa1185860:intron | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | - | chr8_1:23555369-23555388 | Msa1185860:intron | 25.0% |
| ! | GGAAAAAAAAAACATGCAAA+AGG | + | chr8_1:23555411-23555430 | None:intergenic | 25.0% |
| ! | CTTAGAACAATTTCTACAAA+AGG | + | chr8_1:23555859-23555878 | None:intergenic | 25.0% |
| !!! | GTAGAAATTGTTCTAAGTTT+TGG | - | chr8_1:23555862-23555881 | Msa1185860:intron | 25.0% |
| !!! | AACTGGTCTTTATTTTATCA+TGG | - | chr8_1:23555900-23555919 | Msa1185860:intron | 25.0% |
| ! | ATTACCATAAAATTGAAGAC+AGG | + | chr8_1:23556012-23556031 | None:intergenic | 25.0% |
| ! | TATAAAAATTCAAGGAATGG+TGG | + | chr8_1:23556111-23556130 | None:intergenic | 25.0% |
| ! | GCATATAAAAATTCAAGGAA+TGG | + | chr8_1:23556114-23556133 | None:intergenic | 25.0% |
| ! | TCAAATGATGAACTTATTGT+AGG | - | chr8_1:23556236-23556255 | Msa1185860:intron | 25.0% |
| ! | GAACTTATTGTAGGTAAATT+TGG | - | chr8_1:23556245-23556264 | Msa1185860:intron | 25.0% |
| ! | TTGAACTAGAATTGAAAGTT+GGG | + | chr8_1:23556380-23556399 | None:intergenic | 25.0% |
| ! | ATTGAACTAGAATTGAAAGT+TGG | + | chr8_1:23556381-23556400 | None:intergenic | 25.0% |
| !!! | ATATTTCATTTTTGTGTCAC+TGG | - | chr8_1:23556444-23556463 | Msa1185860:intron | 25.0% |
| ! | GTGATTTAGACAAAATCATT+GGG | + | chr8_1:23556529-23556548 | None:intergenic | 25.0% |
| ! | TGTGATTTAGACAAAATCAT+TGG | + | chr8_1:23556530-23556549 | None:intergenic | 25.0% |
| ! | AAAAACCGAACCTATATAAA+TGG | + | chr8_1:23556672-23556691 | None:intergenic | 25.0% |
| ! | TATTTAAGAGAAATTAGGGA+CGG | - | chr8_1:23556832-23556851 | Msa1185860:intron | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | - | chr8_1:23557267-23557286 | Msa1185860:CDS | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | - | chr8_1:23557289-23557308 | Msa1185860:CDS | 25.0% |
| TGAATTAGAAGACAAGAGAA+TGG | - | chr8_1:23554875-23554894 | Msa1185860:CDS | 30.0% | |
| TTACTGTTGCACTACAAATA+GGG | - | chr8_1:23554949-23554968 | Msa1185860:CDS | 30.0% | |
| AGATCAGAAGAAGAATTACT+AGG | + | chr8_1:23554978-23554997 | None:intergenic | 30.0% | |
| AGTAATTCTTCTTCTGATCT+TGG | - | chr8_1:23554978-23554997 | Msa1185860:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | - | chr8_1:23555013-23555032 | Msa1185860:CDS | 30.0% | |
| ! | TCTTGAAAACTATGCTTTTG+AGG | - | chr8_1:23555209-23555228 | Msa1185860:intron | 30.0% |
| GTTAGGAAAATATGGCAATA+AGG | + | chr8_1:23555255-23555274 | None:intergenic | 30.0% | |
| TAGATGCAGTTAGGAAAATA+TGG | + | chr8_1:23555263-23555282 | None:intergenic | 30.0% | |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | + | chr8_1:23555595-23555614 | None:intergenic | 30.0% |
| GTCTGTGATAAGATCATATA+TGG | - | chr8_1:23555714-23555733 | Msa1185860:intron | 30.0% | |
| !! | ATTTCTGAGACATCAATTGA+AGG | + | chr8_1:23555776-23555795 | None:intergenic | 30.0% |
| GGAATAGTATATTCAACAGT+GGG | + | chr8_1:23556271-23556290 | None:intergenic | 30.0% | |
| TGGAATAGTATATTCAACAG+TGG | + | chr8_1:23556272-23556291 | None:intergenic | 30.0% | |
| ! | AGACTTGTGATTTTCTGTTA+TGG | + | chr8_1:23556292-23556311 | None:intergenic | 30.0% |
| ACAGAAAATCACAAGTCTAA+AGG | - | chr8_1:23556294-23556313 | Msa1185860:intron | 30.0% | |
| CTGAAAAATAAATGCAAGAC+TGG | - | chr8_1:23556560-23556579 | Msa1185860:intron | 30.0% | |
| TTGCAACAAGAAAACTAAAG+AGG | - | chr8_1:23556888-23556907 | Msa1185860:intron | 30.0% | |
| TGCAACAAGAAAACTAAAGA+GGG | - | chr8_1:23556889-23556908 | Msa1185860:intron | 30.0% | |
| AATATATGGGTGCATCTTTA+TGG | - | chr8_1:23556963-23556982 | Msa1185860:CDS | 30.0% | |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | + | chr8_1:23557138-23557157 | None:intergenic | 30.0% |
| ACACATTATAAGAGAAAGCA+TGG | - | chr8_1:23557162-23557181 | Msa1185860:CDS | 30.0% | |
| ! | CCACATTTTCTACACATATA+AGG | + | chr8_1:23557195-23557214 | None:intergenic | 30.0% |
| CCTTATATGTGTAGAAAATG+TGG | - | chr8_1:23557192-23557211 | Msa1185860:CDS | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | - | chr8_1:23557253-23557272 | Msa1185860:CDS | 30.0% | |
| AAAGACCATATTAAAGCCTT+TGG | - | chr8_1:23557318-23557337 | Msa1185860:CDS | 30.0% | |
| ! | CATAACCAAAGGCTTTAATA+TGG | + | chr8_1:23557326-23557345 | None:intergenic | 30.0% |
| CATATTAAAGCCTTTGGTTA+TGG | - | chr8_1:23557324-23557343 | Msa1185860:CDS | 30.0% | |
| !! | AGGCTTAGTTTGTTAATGAG+AGG | + | chr8_1:23554795-23554814 | None:intergenic | 35.0% |
| TAGAAGACAAGAGAATGGAA+AGG | - | chr8_1:23554880-23554899 | Msa1185860:CDS | 35.0% | |
| GTTACTGTTGCACTACAAAT+AGG | - | chr8_1:23554948-23554967 | Msa1185860:CDS | 35.0% | |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | + | chr8_1:23555116-23555135 | None:intergenic | 35.0% |
| ACACCTTCTCAAATTCTCAT+TGG | - | chr8_1:23555116-23555135 | Msa1185860:intron | 35.0% | |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | + | chr8_1:23555161-23555180 | None:intergenic | 35.0% |
| CAACAGATACAACAATCTTC+AGG | - | chr8_1:23555178-23555197 | Msa1185860:intron | 35.0% | |
| !!! | AAACTATGCTTTTGAGGTGT+TGG | - | chr8_1:23555215-23555234 | Msa1185860:intron | 35.0% |
| !!! | ACATGGTTTTAGATGCAGTT+AGG | + | chr8_1:23555272-23555291 | None:intergenic | 35.0% |
| AACCTTGTGCCAAAAATACT+TGG | - | chr8_1:23555974-23555993 | Msa1185860:intron | 35.0% | |
| !!! | AACCAAGTATTTTTGGCACA+AGG | + | chr8_1:23555979-23555998 | None:intergenic | 35.0% |
| ! | TGTGCCTGTCTTCAATTTTA+TGG | - | chr8_1:23556005-23556024 | Msa1185860:intron | 35.0% |
| ACGGAGAGAATATTGATCAA+GGG | + | chr8_1:23556700-23556719 | None:intergenic | 35.0% | |
| CAACGTCATATAATTTGGGA+CGG | + | chr8_1:23556719-23556738 | None:intergenic | 35.0% | |
| TCCCAAATTATATGACGTTG+TGG | - | chr8_1:23556719-23556738 | Msa1185860:intron | 35.0% | |
| CCCACAACGTCATATAATTT+GGG | + | chr8_1:23556723-23556742 | None:intergenic | 35.0% | |
| CCCAAATTATATGACGTTGT+GGG | - | chr8_1:23556720-23556739 | Msa1185860:intron | 35.0% | |
| ! | TGGATTTTCAGATGCATATG+TGG | - | chr8_1:23556983-23557002 | Msa1185860:CDS | 35.0% |
| ! | GGATTTTCAGATGCATATGT+GGG | - | chr8_1:23556984-23557003 | Msa1185860:CDS | 35.0% |
| ! | GATTTTCAGATGCATATGTG+GGG | - | chr8_1:23556985-23557004 | Msa1185860:CDS | 35.0% |
| ACATGGATCTCAATACAGAA+AGG | - | chr8_1:23557008-23557027 | Msa1185860:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | - | chr8_1:23557009-23557028 | Msa1185860:CDS | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | - | chr8_1:23557010-23557029 | Msa1185860:CDS | 35.0% | |
| !! | TGTGATCCTTTTAGAGAATC+TGG | + | chr8_1:23557036-23557055 | None:intergenic | 35.0% |
| AGAACACATGAGAAGAATTG+TGG | - | chr8_1:23557243-23557262 | Msa1185860:CDS | 35.0% | |
| !! | GGGTTGATGATGAAACATGT+TGG | + | chr8_1:23554718-23554737 | None:intergenic | 40.0% |
| CTTCTTCTGATCTTGGATCA+AGG | - | chr8_1:23554985-23555004 | Msa1185860:CDS | 40.0% | |
| TTCTGATCTTGGATCAAGGA+TGG | - | chr8_1:23554989-23555008 | Msa1185860:CDS | 40.0% | |
| GATTTCTGAGCAACAACCTT+TGG | - | chr8_1:23555058-23555077 | Msa1185860:intron | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | - | chr8_1:23555087-23555106 | Msa1185860:intron | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | + | chr8_1:23555122-23555141 | None:intergenic | 40.0% | |
| AACTCGACACAGTACTATTG+AGG | - | chr8_1:23556490-23556509 | Msa1185860:intron | 40.0% | |
| CGGAGAGAATATTGATCAAG+GGG | + | chr8_1:23556699-23556718 | None:intergenic | 40.0% | |
| GACGGAGAGAATATTGATCA+AGG | + | chr8_1:23556701-23556720 | None:intergenic | 40.0% | |
| GCCCACAACGTCATATAATT+TGG | + | chr8_1:23556724-23556743 | None:intergenic | 40.0% | |
| TCAATGTTATGCTTGCAACC+TGG | + | chr8_1:23557099-23557118 | None:intergenic | 40.0% | |
| GGCAAATCATTTGCAGTGAA+AGG | - | chr8_1:23557213-23557232 | Msa1185860:CDS | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | - | chr8_1:23557220-23557239 | Msa1185860:CDS | 40.0% | |
| AAAGCCTTTGGTTATGGTCA+TGG | - | chr8_1:23557330-23557349 | Msa1185860:CDS | 40.0% | |
| AGAGGAAGAGCTTCTCTAAG+AGG | + | chr8_1:23554777-23554796 | None:intergenic | 45.0% | |
| GACAAGAGAATGGAAAGGCA+TGG | - | chr8_1:23554885-23554904 | Msa1185860:CDS | 45.0% | |
| ACAGGACAAGAGAATTGCGT+AGG | + | chr8_1:23555143-23555162 | None:intergenic | 45.0% | |
| !!! | TGCTTTTGAGGTGTTGGCAA+TGG | - | chr8_1:23555221-23555240 | Msa1185860:intron | 45.0% |
| GGTTACTGCTAAGTGCTAAC+TGG | - | chr8_1:23555883-23555902 | Msa1185860:intron | 45.0% | |
| AAGGGGCCAGATTCTCTAAA+AGG | - | chr8_1:23557027-23557046 | Msa1185860:CDS | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | - | chr8_1:23557052-23557071 | Msa1185860:CDS | 45.0% | |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | + | chr8_1:23557126-23557145 | None:intergenic | 45.0% |
| AGCACCATGACCATAACCAA+AGG | + | chr8_1:23557337-23557356 | None:intergenic | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | - | chr8_1:23557339-23557358 | Msa1185860:CDS | 45.0% |
| !! | TTTATTTAATAGTTAATATA+TGG | - | chr8_1:23556949-23556968 | Msa1185860:CDS | 5.0% |
| !! | TTATTTAATAGTTAATATAT+GGG | - | chr8_1:23556950-23556969 | Msa1185860:CDS | 5.0% |
| ! | ATTCATGGTGGAGGATGAGG+AGG | + | chr8_1:23554742-23554761 | None:intergenic | 50.0% |
| ! | AGGATTCATGGTGGAGGATG+AGG | + | chr8_1:23554745-23554764 | None:intergenic | 50.0% |
| AGAAGGAGGATTCATGGTGG+AGG | + | chr8_1:23554751-23554770 | None:intergenic | 50.0% | |
| AGGAGAAGGAGGATTCATGG+TGG | + | chr8_1:23554754-23554773 | None:intergenic | 50.0% | |
| AGGAGGAGAAGGAGGATTCA+TGG | + | chr8_1:23554757-23554776 | None:intergenic | 50.0% | |
| ! | TCTCTAAGAGGAGGAGAAGG+AGG | + | chr8_1:23554765-23554784 | None:intergenic | 50.0% |
| ! | GCTTCTCTAAGAGGAGGAGA+AGG | + | chr8_1:23554768-23554787 | None:intergenic | 50.0% |
| ! | GGAAGAGCTTCTCTAAGAGG+AGG | + | chr8_1:23554774-23554793 | None:intergenic | 50.0% |
| CAGATGCATATGTGGGGACA+TGG | - | chr8_1:23556991-23557010 | Msa1185860:CDS | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | + | chr8_1:23557060-23557079 | None:intergenic | 50.0% |
| CCTGGTGCACAACAATAGCA+TGG | + | chr8_1:23557081-23557100 | None:intergenic | 50.0% | |
| CCATGCTATTGTTGTGCACC+AGG | - | chr8_1:23557078-23557097 | Msa1185860:CDS | 50.0% | |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | + | chr8_1:23557122-23557141 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGATGAGGAGGA+GGG | + | chr8_1:23554738-23554757 | None:intergenic | 55.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | + | chr8_1:23555576-23555595 | None:intergenic | 55.0% | |
| ! | CATGGTGGAGGATGAGGAGG+AGG | + | chr8_1:23554739-23554758 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 23554702 | 23557392 | 23554702 | ID=Msa1185860;Name=Msa1185860 |
| chr8_1 | mRNA | 23554702 | 23557392 | 23554702 | ID=Msa1185860-mRNA-1;Parent=Msa1185860;Name=Msa1185860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|0|0.5|1|1|0.5|2|0|281 |
| chr8_1 | exon | 23554702 | 23555064 | 23554702 | ID=Msa1185860-mRNA-1:exon:8597;Parent=Msa1185860-mRNA-1 |
| chr8_1 | exon | 23556895 | 23557392 | 23556895 | ID=Msa1185860-mRNA-1:exon:8596;Parent=Msa1185860-mRNA-1 |
| chr8_1 | five_prime_UTR | 23557375 | 23557392 | 23557375 | ID=Msa1185860-mRNA-1:five_prime_utr;Parent=Msa1185860-mRNA-1 |
| chr8_1 | CDS | 23556895 | 23557374 | 23556895 | ID=Msa1185860-mRNA-1:cds;Parent=Msa1185860-mRNA-1 |
| chr8_1 | CDS | 23554702 | 23555064 | 23554702 | ID=Msa1185860-mRNA-1:cds;Parent=Msa1185860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
