Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307510 | XP_024628367.1 | 92.857 | 294 | 8 | 2 | 1 | 281 | 35 | 328 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307510 | sp|Q9SVY1|ZWIP2_ARATH | 62.449 | 245 | 50 | 4 | 77 | 280 | 122 | 365 | 6.83e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307510 | A0A396GKT8 | 92.857 | 294 | 8 | 2 | 1 | 281 | 35 | 328 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1307510 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185860 | Msa1307510 | 0.986117 | 9.966509e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307510 | MtrunA17_Chr8g0352011 | 92.857 | 294 | 8 | 2 | 1 | 281 | 35 | 328 | 0.0 | 513 |
| Msa1307510 | MtrunA17_Chr1g0173841 | 58.042 | 286 | 94 | 3 | 20 | 280 | 92 | 376 | 1.46e-113 | 332 |
| Msa1307510 | MtrunA17_Chr7g0258011 | 59.786 | 281 | 84 | 5 | 20 | 280 | 66 | 337 | 2.78e-110 | 322 |
| Msa1307510 | MtrunA17_Chr2g0328921 | 61.905 | 273 | 75 | 8 | 21 | 280 | 44 | 300 | 7.50e-108 | 315 |
| Msa1307510 | MtrunA17_Chr2g0321291 | 59.292 | 226 | 63 | 4 | 62 | 267 | 65 | 281 | 1.11e-90 | 271 |
| Msa1307510 | MtrunA17_Chr5g0422571 | 58.744 | 223 | 60 | 6 | 72 | 279 | 57 | 262 | 9.32e-89 | 266 |
| Msa1307510 | MtrunA17_Chr4g0026521 | 63.184 | 201 | 52 | 2 | 79 | 267 | 76 | 266 | 1.77e-88 | 265 |
| Msa1307510 | MtrunA17_Chr4g0053341 | 57.563 | 238 | 62 | 5 | 45 | 270 | 15 | 225 | 1.44e-84 | 253 |
| Msa1307510 | MtrunA17_Chr1g0198651 | 66.871 | 163 | 39 | 2 | 128 | 275 | 99 | 261 | 8.75e-80 | 243 |
| Msa1307510 | MtrunA17_Chr1g0200421 | 36.552 | 145 | 71 | 4 | 138 | 263 | 245 | 387 | 2.48e-19 | 87.4 |
| Msa1307510 | MtrunA17_Chr1g0151351 | 36.496 | 137 | 74 | 5 | 136 | 263 | 62 | 194 | 2.57e-18 | 84.3 |
| Msa1307510 | MtrunA17_Chr1g0191991 | 35.393 | 178 | 87 | 8 | 117 | 279 | 59 | 223 | 9.13e-18 | 82.8 |
| Msa1307510 | MtrunA17_Chr7g0268961 | 33.742 | 163 | 80 | 8 | 132 | 279 | 33 | 182 | 1.07e-17 | 82.8 |
| Msa1307510 | MtrunA17_Chr1g0162971 | 37.313 | 134 | 72 | 4 | 138 | 263 | 64 | 193 | 1.22e-17 | 82.4 |
| Msa1307510 | MtrunA17_Chr4g0029521 | 37.037 | 135 | 72 | 5 | 138 | 263 | 61 | 191 | 1.35e-17 | 82.4 |
| Msa1307510 | MtrunA17_Chr1g0210821 | 36.170 | 141 | 78 | 4 | 131 | 263 | 60 | 196 | 1.75e-17 | 82.0 |
| Msa1307510 | MtrunA17_Chr1g0199101 | 35.461 | 141 | 79 | 4 | 131 | 263 | 63 | 199 | 1.83e-17 | 82.0 |
| Msa1307510 | MtrunA17_Chr1g0163001 | 35.461 | 141 | 79 | 4 | 131 | 263 | 59 | 195 | 3.31e-17 | 81.3 |
| Msa1307510 | MtrunA17_Chr1g0185121 | 36.496 | 137 | 74 | 5 | 136 | 263 | 61 | 193 | 3.39e-17 | 80.9 |
| Msa1307510 | MtrunA17_Chr8g0342421 | 36.296 | 135 | 72 | 6 | 138 | 263 | 85 | 214 | 3.40e-17 | 81.3 |
| Msa1307510 | MtrunA17_Chr2g0326381 | 36.567 | 134 | 74 | 4 | 138 | 263 | 55 | 185 | 3.90e-17 | 80.9 |
| Msa1307510 | MtrunA17_Chr2g0320341 | 35.570 | 149 | 76 | 6 | 138 | 267 | 238 | 385 | 4.39e-17 | 80.5 |
| Msa1307510 | MtrunA17_Chr2g0330171 | 34.043 | 141 | 81 | 4 | 131 | 263 | 62 | 198 | 1.02e-16 | 79.7 |
| Msa1307510 | MtrunA17_Chr1g0181381 | 33.824 | 136 | 79 | 4 | 136 | 263 | 59 | 191 | 3.17e-16 | 78.2 |
| Msa1307510 | MtrunA17_Chr7g0263941 | 34.752 | 141 | 80 | 4 | 131 | 263 | 50 | 186 | 3.96e-16 | 77.8 |
| Msa1307510 | MtrunA17_Chr8g0373541 | 33.333 | 150 | 80 | 5 | 138 | 279 | 56 | 193 | 7.92e-16 | 77.0 |
| Msa1307510 | MtrunA17_Chr2g0324991 | 35.036 | 137 | 77 | 5 | 131 | 258 | 8 | 141 | 1.98e-15 | 72.0 |
| Msa1307510 | MtrunA17_Chr4g0040571 | 33.333 | 141 | 82 | 4 | 131 | 263 | 55 | 191 | 3.71e-15 | 75.1 |
| Msa1307510 | MtrunA17_Chr8g0382121 | 34.328 | 134 | 72 | 4 | 146 | 263 | 127 | 260 | 1.52e-13 | 69.7 |
| Msa1307510 | MtrunA17_Chr3g0141431 | 33.083 | 133 | 77 | 4 | 136 | 259 | 43 | 172 | 2.11e-13 | 69.7 |
| Msa1307510 | MtrunA17_Chr3g0123941 | 34.228 | 149 | 80 | 6 | 146 | 281 | 139 | 282 | 2.13e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307510 | AT3G57670.1 | 62.449 | 245 | 50 | 4 | 77 | 280 | 122 | 365 | 6.94e-104 | 308 |
| Msa1307510 | AT1G51220.1 | 53.584 | 293 | 97 | 5 | 10 | 280 | 51 | 326 | 1.32e-100 | 298 |
| Msa1307510 | AT3G20880.1 | 53.741 | 294 | 98 | 7 | 14 | 278 | 119 | 403 | 5.82e-98 | 293 |
| Msa1307510 | AT1G08290.1 | 50.000 | 272 | 103 | 6 | 40 | 280 | 63 | 332 | 5.15e-84 | 255 |
| Msa1307510 | AT1G13290.1 | 59.524 | 210 | 51 | 5 | 77 | 272 | 54 | 243 | 2.02e-83 | 253 |
| Msa1307510 | AT1G34790.1 | 59.070 | 215 | 69 | 4 | 77 | 278 | 83 | 291 | 9.57e-82 | 248 |
| Msa1307510 | AT1G34370.2 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.16e-18 | 85.9 |
| Msa1307510 | AT1G34370.1 | 34.694 | 147 | 73 | 4 | 138 | 263 | 238 | 382 | 1.16e-18 | 85.9 |
| Msa1307510 | AT1G55110.3 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1307510 | AT1G55110.1 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1307510 | AT1G55110.2 | 37.956 | 137 | 72 | 6 | 136 | 263 | 84 | 216 | 1.63e-18 | 85.5 |
| Msa1307510 | AT1G34370.3 | 34.694 | 147 | 73 | 4 | 138 | 263 | 28 | 172 | 1.67e-18 | 83.6 |
| Msa1307510 | AT5G22890.1 | 36.913 | 149 | 74 | 6 | 138 | 267 | 211 | 358 | 6.46e-18 | 83.2 |
| Msa1307510 | AT2G02080.1 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1307510 | AT2G02080.4 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1307510 | AT2G02080.5 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1307510 | AT2G02080.3 | 36.765 | 136 | 74 | 4 | 136 | 263 | 75 | 206 | 7.29e-18 | 83.6 |
| Msa1307510 | AT2G02070.2 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.04e-17 | 83.2 |
| Msa1307510 | AT2G02070.1 | 36.170 | 141 | 78 | 4 | 131 | 263 | 68 | 204 | 1.04e-17 | 83.2 |
| Msa1307510 | AT5G03150.1 | 35.821 | 134 | 75 | 4 | 138 | 263 | 76 | 206 | 1.59e-17 | 82.4 |
| Msa1307510 | AT1G14580.3 | 36.170 | 141 | 78 | 4 | 131 | 263 | 83 | 219 | 2.65e-17 | 82.0 |
| Msa1307510 | AT1G14580.1 | 36.170 | 141 | 78 | 4 | 131 | 263 | 69 | 205 | 2.71e-17 | 81.6 |
| Msa1307510 | AT1G14580.2 | 36.170 | 141 | 78 | 4 | 131 | 263 | 69 | 205 | 2.71e-17 | 81.6 |
| Msa1307510 | AT2G02080.6 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 3.51e-17 | 81.3 |
| Msa1307510 | AT2G02080.2 | 36.842 | 133 | 72 | 4 | 139 | 263 | 1 | 129 | 3.51e-17 | 81.3 |
| Msa1307510 | AT5G66730.1 | 35.766 | 137 | 74 | 6 | 136 | 263 | 53 | 184 | 2.74e-16 | 79.0 |
| Msa1307510 | AT3G45260.2 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.11e-16 | 77.8 |
| Msa1307510 | AT3G45260.1 | 36.567 | 134 | 74 | 4 | 138 | 263 | 62 | 192 | 6.11e-16 | 77.8 |
| Msa1307510 | AT1G03840.1 | 34.043 | 141 | 81 | 5 | 131 | 263 | 57 | 193 | 8.83e-16 | 77.4 |
| Msa1307510 | AT1G03840.2 | 34.043 | 141 | 81 | 5 | 131 | 263 | 55 | 191 | 8.89e-16 | 77.4 |
| Msa1307510 | AT5G60470.1 | 35.115 | 131 | 73 | 4 | 138 | 259 | 58 | 185 | 9.33e-16 | 77.4 |
| Msa1307510 | AT5G44160.2 | 35.075 | 134 | 75 | 4 | 138 | 263 | 21 | 150 | 9.53e-16 | 77.0 |
| Msa1307510 | AT5G44160.1 | 35.075 | 134 | 75 | 4 | 138 | 263 | 60 | 189 | 9.76e-16 | 77.4 |
| Msa1307510 | AT5G60470.2 | 35.115 | 131 | 73 | 4 | 138 | 259 | 67 | 194 | 1.14e-15 | 77.0 |
| Msa1307510 | AT5G60470.3 | 35.115 | 131 | 73 | 4 | 138 | 259 | 63 | 190 | 1.25e-15 | 77.0 |
| Msa1307510 | AT3G13810.4 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.71e-15 | 75.1 |
| Msa1307510 | AT3G13810.1 | 33.803 | 142 | 81 | 5 | 131 | 263 | 86 | 223 | 5.71e-15 | 75.1 |
| Msa1307510 | AT3G13810.2 | 33.803 | 142 | 81 | 5 | 131 | 263 | 87 | 224 | 6.22e-15 | 75.1 |
| Msa1307510 | AT3G13810.5 | 33.803 | 142 | 81 | 5 | 131 | 263 | 81 | 218 | 7.10e-15 | 74.7 |
| Msa1307510 | AT3G13810.3 | 33.803 | 142 | 81 | 5 | 131 | 263 | 73 | 210 | 7.43e-15 | 74.7 |
| Msa1307510 | AT4G02670.2 | 33.803 | 142 | 81 | 6 | 131 | 263 | 71 | 208 | 7.45e-15 | 74.3 |
| Msa1307510 | AT4G02670.1 | 33.803 | 142 | 81 | 6 | 131 | 263 | 69 | 206 | 8.05e-15 | 74.3 |
| Msa1307510 | AT3G13810.6 | 33.803 | 142 | 81 | 5 | 131 | 263 | 67 | 204 | 8.09e-15 | 74.7 |
| Msa1307510 | AT3G50700.1 | 32.237 | 152 | 83 | 5 | 136 | 279 | 55 | 194 | 1.71e-14 | 73.6 |
Find 58 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTGTTGCACTACAAAT+AGG | 0.241591 | 8_4:-3239585 | Msa1307510:CDS |
| AGTAATTCTTCTTCTGATCT+TGG | 0.279002 | 8_4:-3239555 | Msa1307510:CDS |
| GGTTATGGTCATGGTGCTTT+TGG | 0.295781 | 8_4:-3237194 | Msa1307510:CDS |
| CATATTAAAGCCTTTGGTTA+TGG | 0.310320 | 8_4:-3237209 | Msa1307510:CDS |
| AGGAGGAGAAGGAGGATTCA+TGG | 0.322930 | 8_4:+3239779 | None:intergenic |
| AGAAGAATTGTGGCAAAATA+TGG | 0.329283 | 8_4:-3237280 | Msa1307510:CDS |
| AAGGGGCCAGATTCTCTAAA+AGG | 0.343680 | 8_4:-3237506 | Msa1307510:CDS |
| AAAGACCATATTAAAGCCTT+TGG | 0.344662 | 8_4:-3237215 | Msa1307510:CDS |
| GATTTCTGAGCAACAACCTT+TGG | 0.368710 | 8_4:-3239475 | Msa1307510:CDS |
| AGGATTCATGGTGGAGGATG+AGG | 0.378060 | 8_4:+3239791 | None:intergenic |
| CATAACCAAAGGCTTTAATA+TGG | 0.384327 | 8_4:+3237210 | None:intergenic |
| CTCATCAAATTGCATAGAAA+TGG | 0.392609 | 8_4:-3239520 | Msa1307510:CDS |
| TTACTGTTGCACTACAAATA+GGG | 0.402089 | 8_4:-3239584 | Msa1307510:CDS |
| CTTCTTCTGATCTTGGATCA+AGG | 0.402872 | 8_4:-3239548 | Msa1307510:CDS |
| CAACAGATACAACAATCTTC+AGG | 0.407884 | 8_4:-3239355 | Msa1307510:intron |
| CATTTGCAGTGAAAGGTGAT+TGG | 0.425078 | 8_4:-3237313 | Msa1307510:CDS |
| CATGGTGGAGGATGAGGAGG+AGG | 0.440334 | 8_4:+3239797 | None:intergenic |
| ACACCTTCTCAAATTCTCAT+TGG | 0.440374 | 8_4:-3239417 | Msa1307510:CDS |
| TGAACAACAAGGGTCAGTAT+TGG | 0.446866 | 8_4:-3239446 | Msa1307510:CDS |
| TGAATTAGAAGACAAGAGAA+TGG | 0.451445 | 8_4:-3239658 | Msa1307510:CDS |
| CCATGCTATTGTTGTGCACC+AGG | 0.454587 | 8_4:-3237455 | Msa1307510:CDS |
| AAAGCCTTTGGTTATGGTCA+TGG | 0.479825 | 8_4:-3237203 | Msa1307510:CDS |
| TTTGTTGTTGATGATTTATG+AGG | 0.483129 | 8_4:+3239721 | None:intergenic |
| TTCTGATCTTGGATCAAGGA+TGG | 0.488172 | 8_4:-3239544 | Msa1307510:CDS |
| TGAGAGGCTTTGCTCTAGGA+TGG | 0.497344 | 8_4:+3237414 | None:intergenic |
| TCTTTGAGAGGCTTTGCTCT+AGG | 0.513133 | 8_4:+3237410 | None:intergenic |
| ATGAGAATTTGAGAAGGTGT+TGG | 0.518525 | 8_4:+3239420 | None:intergenic |
| AGAAGGAGGATTCATGGTGG+AGG | 0.523835 | 8_4:+3239785 | None:intergenic |
| AGAGGAAGAGCTTCTCTAAG+AGG | 0.528799 | 8_4:+3239759 | None:intergenic |
| CCTTATATGTGTAGAAAATG+TGG | 0.531273 | 8_4:-3237341 | Msa1307510:CDS |
| ATTCATGGTGGAGGATGAGG+AGG | 0.531814 | 8_4:+3239794 | None:intergenic |
| AGATCAGAAGAAGAATTACT+AGG | 0.534223 | 8_4:+3239558 | None:intergenic |
| TTGTTGTTCAATTTATCCAA+AGG | 0.534250 | 8_4:+3239459 | None:intergenic |
| AGGCTTAGTTTGTTAATGAG+AGG | 0.538138 | 8_4:+3239741 | None:intergenic |
| GCTTCTCTAAGAGGAGGAGA+AGG | 0.538140 | 8_4:+3239768 | None:intergenic |
| TTGCAAGAAGAAGATGAAGT+AGG | 0.553002 | 8_4:-3237161 | None:intergenic |
| GACAAGAGAATGGAAAGGCA+TGG | 0.561442 | 8_4:-3239648 | Msa1307510:CDS |
| TGCAAGAAGAAGATGAAGTA+GGG | 0.562185 | 8_4:-3237160 | None:intergenic |
| AGGAGAAGGAGGATTCATGG+TGG | 0.564100 | 8_4:+3239782 | None:intergenic |
| ACACATTATAAGAGAAAGCA+TGG | 0.564164 | 8_4:-3237371 | Msa1307510:CDS |
| GGTAGCCTTAGCATTGCTGT+TGG | 0.572264 | 8_4:+3237476 | None:intergenic |
| TCTCTAAGAGGAGGAGAAGG+AGG | 0.574547 | 8_4:+3239771 | None:intergenic |
| CACAACCAACAGCAATGCTA+AGG | 0.579227 | 8_4:-3237481 | Msa1307510:CDS |
| ATGGTGGAGGATGAGGAGGA+GGG | 0.583723 | 8_4:+3239798 | None:intergenic |
| AGAGTTCTAAAATCTTTGAG+AGG | 0.584007 | 8_4:+3237398 | None:intergenic |
| AAAATATGGTATTGTTTGTG+TGG | 0.602783 | 8_4:-3237266 | Msa1307510:CDS |
| TAGAAGACAAGAGAATGGAA+AGG | 0.616360 | 8_4:-3239653 | Msa1307510:CDS |
| GGCAAATCATTTGCAGTGAA+AGG | 0.616551 | 8_4:-3237320 | Msa1307510:CDS |
| TTGGATAAATTGAACAACAA+GGG | 0.616704 | 8_4:-3239456 | Msa1307510:CDS |
| AGAACACATGAGAAGAATTG+TGG | 0.625082 | 8_4:-3237290 | Msa1307510:CDS |
| GGAAGAGCTTCTCTAAGAGG+AGG | 0.638851 | 8_4:+3239762 | None:intergenic |
| TCAATGTTATGCTTGCAACC+TGG | 0.646006 | 8_4:+3237437 | None:intergenic |
| GGGTTGATGATGAAACATGT+TGG | 0.646858 | 8_4:+3239818 | None:intergenic |
| TTTGGATAAATTGAACAACA+AGG | 0.660452 | 8_4:-3239457 | Msa1307510:CDS |
| AGCACCATGACCATAACCAA+AGG | 0.668968 | 8_4:+3237199 | None:intergenic |
| ACAGGACAAGAGAATTGCGT+AGG | 0.670453 | 8_4:+3239393 | None:intergenic |
| CCTGGTGCACAACAATAGCA+TGG | 0.670992 | 8_4:+3237455 | None:intergenic |
| GGACCAATGAGAATTTGAGA+AGG | 0.690488 | 8_4:+3239414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATATATATAATTTTGAA+TGG | + | chr8_4:3238211-3238230 | None:intergenic | 10.0% |
| !! | CATTCAAAATTATATATATA+TGG | - | chr8_4:3238209-3238228 | Msa1307510:intron | 10.0% |
| !! | CTTAATTATACTTAAATTAT+TGG | + | chr8_4:3238266-3238285 | None:intergenic | 10.0% |
| !!! | TTCTTTATTTACTTTTTTTT+TGG | - | chr8_4:3238504-3238523 | Msa1307510:intron | 10.0% |
| !!! | ATTTTCTTTTCTAAATTTAG+GGG | + | chr8_4:3237794-3237813 | None:intergenic | 15.0% |
| !!! | CATTTTCTTTTCTAAATTTA+GGG | + | chr8_4:3237795-3237814 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTTTCTAAATTT+AGG | + | chr8_4:3237796-3237815 | None:intergenic | 15.0% |
| !!! | AAAATGTAATTAATTTTGTG+TGG | - | chr8_4:3239221-3239240 | Msa1307510:intron | 15.0% |
| !! | TGATATATTTAAGAGAAATT+AGG | - | chr8_4:3239288-3239307 | Msa1307510:intron | 15.0% |
| !! | GATATATTTAAGAGAAATTA+GGG | - | chr8_4:3239289-3239308 | Msa1307510:intron | 15.0% |
| !! | TGAGTATTAAAAATGTTTGA+GGG | + | chr8_4:3237304-3237323 | None:intergenic | 20.0% |
| !! | TTGAGTATTAAAAATGTTTG+AGG | + | chr8_4:3237305-3237324 | None:intergenic | 20.0% |
| !! | AAAAAACAGAAGTAAAAACA+TGG | + | chr8_4:3237750-3237769 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAACATGCAAAA+GGG | + | chr8_4:3237871-3237890 | None:intergenic | 20.0% |
| !!! | GTTATTTGAAACTAACAAAA+AGG | + | chr8_4:3237893-3237912 | None:intergenic | 20.0% |
| !!! | TATAATTTTGAATGGCTTAA+AGG | + | chr8_4:3238203-3238222 | None:intergenic | 20.0% |
| !! | TTAGAACAATTTCTACAAAA+GGG | + | chr8_4:3238319-3238338 | None:intergenic | 20.0% |
| !!! | AATAGAAAACCAAGTATTTT+TGG | + | chr8_4:3238447-3238466 | None:intergenic | 20.0% |
| !!! | TTTTGTTACTTTCTTTTGTT+AGG | - | chr8_4:3238535-3238554 | Msa1307510:intron | 20.0% |
| !!! | TTTGTTACTTTCTTTTGTTA+GGG | - | chr8_4:3238536-3238555 | Msa1307510:intron | 20.0% |
| !! | AAGATGCATATAAAAATTCA+AGG | + | chr8_4:3238580-3238599 | None:intergenic | 20.0% |
| !! | ATTACGATGAGTATATATTT+AGG | + | chr8_4:3238622-3238641 | None:intergenic | 20.0% |
| !! | TTGAAACTAATGTACAAATT+TGG | + | chr8_4:3238681-3238700 | None:intergenic | 20.0% |
| !!! | ATTTCTAGAAATAACAAAAC+TGG | - | chr8_4:3238863-3238882 | Msa1307510:intron | 20.0% |
| !! | ACTAGTTATTCCATTTATAT+AGG | - | chr8_4:3239120-3239139 | Msa1307510:intron | 20.0% |
| !! | TTATTCCATTTATATAGGTT+CGG | - | chr8_4:3239125-3239144 | Msa1307510:intron | 20.0% |
| !!! | TTTGTTGTTGATGATTTATG+AGG | + | chr8_4:3237276-3237295 | None:intergenic | 25.0% |
| !! | TTGTTGTTCAATTTATCCAA+AGG | + | chr8_4:3237538-3237557 | None:intergenic | 25.0% |
| ! | TTTGGATAAATTGAACAACA+AGG | - | chr8_4:3237537-3237556 | Msa1307510:intron | 25.0% |
| ! | TTGGATAAATTGAACAACAA+GGG | - | chr8_4:3237538-3237557 | Msa1307510:intron | 25.0% |
| ! | ATGTGTATCAAGAATCATAA+TGG | - | chr8_4:3237830-3237849 | Msa1307510:intron | 25.0% |
| ! | GGAAAAAAAAAACATGCAAA+AGG | + | chr8_4:3237872-3237891 | None:intergenic | 25.0% |
| ! | CTTAGAACAATTTCTACAAA+AGG | + | chr8_4:3238320-3238339 | None:intergenic | 25.0% |
| !!! | GTAGAAATTGTTCTAAGTTT+TGG | - | chr8_4:3238323-3238342 | Msa1307510:intron | 25.0% |
| !!! | AACTGGTCTTTATTTTATCA+TGG | - | chr8_4:3238361-3238380 | Msa1307510:intron | 25.0% |
| ! | ATTACCATAAAATTGAAGAC+AGG | + | chr8_4:3238473-3238492 | None:intergenic | 25.0% |
| ! | TATAAAAATTCAAGGAATGG+TGG | + | chr8_4:3238572-3238591 | None:intergenic | 25.0% |
| ! | GCATATAAAAATTCAAGGAA+TGG | + | chr8_4:3238575-3238594 | None:intergenic | 25.0% |
| ! | TCAAATGATGAACTTATTGT+AGG | - | chr8_4:3238697-3238716 | Msa1307510:intron | 25.0% |
| ! | GAACTTATTGTAGGTAAATT+TGG | - | chr8_4:3238706-3238725 | Msa1307510:intron | 25.0% |
| ! | TTGAACTAGAATTGAAAGTT+GGG | + | chr8_4:3238841-3238860 | None:intergenic | 25.0% |
| ! | ATTGAACTAGAATTGAAAGT+TGG | + | chr8_4:3238842-3238861 | None:intergenic | 25.0% |
| !!! | ATATTTCATTTTTGTGTCAC+TGG | - | chr8_4:3238905-3238924 | Msa1307510:intron | 25.0% |
| ! | GTGATTTAGACAAAATCATT+GGG | + | chr8_4:3238990-3239009 | None:intergenic | 25.0% |
| ! | TGTGATTTAGACAAAATCAT+TGG | + | chr8_4:3238991-3239010 | None:intergenic | 25.0% |
| ! | AAAAACCGAACCTATATAAA+TGG | + | chr8_4:3239133-3239152 | None:intergenic | 25.0% |
| ! | TATTTAAGAGAAATTAGGGA+CGG | - | chr8_4:3239293-3239312 | Msa1307510:intron | 25.0% |
| ! | AAAATATGGTATTGTTTGTG+TGG | - | chr8_4:3239728-3239747 | Msa1307510:CDS | 25.0% |
| !! | GCTCAGATTTTAAACATAAA+AGG | - | chr8_4:3239750-3239769 | Msa1307510:CDS | 25.0% |
| TGAATTAGAAGACAAGAGAA+TGG | - | chr8_4:3237336-3237355 | Msa1307510:CDS | 30.0% | |
| TTACTGTTGCACTACAAATA+GGG | - | chr8_4:3237410-3237429 | Msa1307510:CDS | 30.0% | |
| AGATCAGAAGAAGAATTACT+AGG | + | chr8_4:3237439-3237458 | None:intergenic | 30.0% | |
| AGTAATTCTTCTTCTGATCT+TGG | - | chr8_4:3237439-3237458 | Msa1307510:CDS | 30.0% | |
| CTCATCAAATTGCATAGAAA+TGG | - | chr8_4:3237474-3237493 | Msa1307510:CDS | 30.0% | |
| ! | TCTTGAAAACTATGCTTTTG+AGG | - | chr8_4:3237670-3237689 | Msa1307510:intron | 30.0% |
| GTTAGGAAAATATGGCAATA+AGG | + | chr8_4:3237716-3237735 | None:intergenic | 30.0% | |
| TAGATGCAGTTAGGAAAATA+TGG | + | chr8_4:3237724-3237743 | None:intergenic | 30.0% | |
| !!! | TTTTCATTGATTTGCAGTAC+TGG | + | chr8_4:3238056-3238075 | None:intergenic | 30.0% |
| GTCTGTGATAAGATCATATA+TGG | - | chr8_4:3238175-3238194 | Msa1307510:intron | 30.0% | |
| !! | ATTTCTGAGACATCAATTGA+AGG | + | chr8_4:3238237-3238256 | None:intergenic | 30.0% |
| GGAATAGTATATTCAACAGT+GGG | + | chr8_4:3238732-3238751 | None:intergenic | 30.0% | |
| TGGAATAGTATATTCAACAG+TGG | + | chr8_4:3238733-3238752 | None:intergenic | 30.0% | |
| ! | AGACTTGTGATTTTCTGTTA+TGG | + | chr8_4:3238753-3238772 | None:intergenic | 30.0% |
| ACAGAAAATCACAAGTCTAA+AGG | - | chr8_4:3238755-3238774 | Msa1307510:intron | 30.0% | |
| CTGAAAAATAAATGCAAGAC+TGG | - | chr8_4:3239021-3239040 | Msa1307510:intron | 30.0% | |
| TTGCAACAAGAAAACTAAAG+AGG | - | chr8_4:3239349-3239368 | Msa1307510:intron | 30.0% | |
| TGCAACAAGAAAACTAAAGA+GGG | - | chr8_4:3239350-3239369 | Msa1307510:intron | 30.0% | |
| AATATATGGGTGCATCTTTA+TGG | - | chr8_4:3239424-3239443 | Msa1307510:CDS | 30.0% | |
| !! | AGAGTTCTAAAATCTTTGAG+AGG | + | chr8_4:3239599-3239618 | None:intergenic | 30.0% |
| ACACATTATAAGAGAAAGCA+TGG | - | chr8_4:3239623-3239642 | Msa1307510:CDS | 30.0% | |
| ! | CCACATTTTCTACACATATA+AGG | + | chr8_4:3239656-3239675 | None:intergenic | 30.0% |
| CCTTATATGTGTAGAAAATG+TGG | - | chr8_4:3239653-3239672 | Msa1307510:CDS | 30.0% | |
| AGAAGAATTGTGGCAAAATA+TGG | - | chr8_4:3239714-3239733 | Msa1307510:CDS | 30.0% | |
| AAAGACCATATTAAAGCCTT+TGG | - | chr8_4:3239779-3239798 | Msa1307510:CDS | 30.0% | |
| ! | CATAACCAAAGGCTTTAATA+TGG | + | chr8_4:3239787-3239806 | None:intergenic | 30.0% |
| CATATTAAAGCCTTTGGTTA+TGG | - | chr8_4:3239785-3239804 | Msa1307510:CDS | 30.0% | |
| !! | AGGCTTAGTTTGTTAATGAG+AGG | + | chr8_4:3237256-3237275 | None:intergenic | 35.0% |
| TAGAAGACAAGAGAATGGAA+AGG | - | chr8_4:3237341-3237360 | Msa1307510:CDS | 35.0% | |
| GTTACTGTTGCACTACAAAT+AGG | - | chr8_4:3237409-3237428 | Msa1307510:CDS | 35.0% | |
| ! | ATGAGAATTTGAGAAGGTGT+TGG | + | chr8_4:3237577-3237596 | None:intergenic | 35.0% |
| ACACCTTCTCAAATTCTCAT+TGG | - | chr8_4:3237577-3237596 | Msa1307510:intron | 35.0% | |
| !!! | TTGAAAGTTTTAGAGCACAC+AGG | + | chr8_4:3237622-3237641 | None:intergenic | 35.0% |
| CAACAGATACAACAATCTTC+AGG | - | chr8_4:3237639-3237658 | Msa1307510:intron | 35.0% | |
| !!! | AAACTATGCTTTTGAGGTGT+TGG | - | chr8_4:3237676-3237695 | Msa1307510:intron | 35.0% |
| !!! | ACATGGTTTTAGATGCAGTT+AGG | + | chr8_4:3237733-3237752 | None:intergenic | 35.0% |
| AACCTTGTGCCAAAAATACT+TGG | - | chr8_4:3238435-3238454 | Msa1307510:intron | 35.0% | |
| !!! | AACCAAGTATTTTTGGCACA+AGG | + | chr8_4:3238440-3238459 | None:intergenic | 35.0% |
| ! | TGTGCCTGTCTTCAATTTTA+TGG | - | chr8_4:3238466-3238485 | Msa1307510:intron | 35.0% |
| ACGGAGAGAATATTGATCAA+GGG | + | chr8_4:3239161-3239180 | None:intergenic | 35.0% | |
| CAACGTCATATAATTTGGGA+CGG | + | chr8_4:3239180-3239199 | None:intergenic | 35.0% | |
| TCCCAAATTATATGACGTTG+TGG | - | chr8_4:3239180-3239199 | Msa1307510:intron | 35.0% | |
| CCCACAACGTCATATAATTT+GGG | + | chr8_4:3239184-3239203 | None:intergenic | 35.0% | |
| CCCAAATTATATGACGTTGT+GGG | - | chr8_4:3239181-3239200 | Msa1307510:intron | 35.0% | |
| ! | TGGATTTTCAGATGCATATG+TGG | - | chr8_4:3239444-3239463 | Msa1307510:CDS | 35.0% |
| ! | GGATTTTCAGATGCATATGT+GGG | - | chr8_4:3239445-3239464 | Msa1307510:CDS | 35.0% |
| ! | GATTTTCAGATGCATATGTG+GGG | - | chr8_4:3239446-3239465 | Msa1307510:CDS | 35.0% |
| ACATGGATCTCAATACAGAA+AGG | - | chr8_4:3239469-3239488 | Msa1307510:CDS | 35.0% | |
| CATGGATCTCAATACAGAAA+GGG | - | chr8_4:3239470-3239489 | Msa1307510:CDS | 35.0% | |
| ATGGATCTCAATACAGAAAG+GGG | - | chr8_4:3239471-3239490 | Msa1307510:CDS | 35.0% | |
| !! | TGTGATCCTTTTAGAGAATC+TGG | + | chr8_4:3239497-3239516 | None:intergenic | 35.0% |
| AGAACACATGAGAAGAATTG+TGG | - | chr8_4:3239704-3239723 | Msa1307510:CDS | 35.0% | |
| !! | GGGTTGATGATGAAACATGT+TGG | + | chr8_4:3237179-3237198 | None:intergenic | 40.0% |
| CTTCTTCTGATCTTGGATCA+AGG | - | chr8_4:3237446-3237465 | Msa1307510:CDS | 40.0% | |
| TTCTGATCTTGGATCAAGGA+TGG | - | chr8_4:3237450-3237469 | Msa1307510:CDS | 40.0% | |
| GATTTCTGAGCAACAACCTT+TGG | - | chr8_4:3237519-3237538 | Msa1307510:intron | 40.0% | |
| TGAACAACAAGGGTCAGTAT+TGG | - | chr8_4:3237548-3237567 | Msa1307510:intron | 40.0% | |
| GGACCAATGAGAATTTGAGA+AGG | + | chr8_4:3237583-3237602 | None:intergenic | 40.0% | |
| AACTCGACACAGTACTATTG+AGG | - | chr8_4:3238951-3238970 | Msa1307510:intron | 40.0% | |
| CGGAGAGAATATTGATCAAG+GGG | + | chr8_4:3239160-3239179 | None:intergenic | 40.0% | |
| GACGGAGAGAATATTGATCA+AGG | + | chr8_4:3239162-3239181 | None:intergenic | 40.0% | |
| GCCCACAACGTCATATAATT+TGG | + | chr8_4:3239185-3239204 | None:intergenic | 40.0% | |
| TCAATGTTATGCTTGCAACC+TGG | + | chr8_4:3239560-3239579 | None:intergenic | 40.0% | |
| GGCAAATCATTTGCAGTGAA+AGG | - | chr8_4:3239674-3239693 | Msa1307510:CDS | 40.0% | |
| CATTTGCAGTGAAAGGTGAT+TGG | - | chr8_4:3239681-3239700 | Msa1307510:CDS | 40.0% | |
| AAAGCCTTTGGTTATGGTCA+TGG | - | chr8_4:3239791-3239810 | Msa1307510:CDS | 40.0% | |
| AGAGGAAGAGCTTCTCTAAG+AGG | + | chr8_4:3237238-3237257 | None:intergenic | 45.0% | |
| GACAAGAGAATGGAAAGGCA+TGG | - | chr8_4:3237346-3237365 | Msa1307510:CDS | 45.0% | |
| ACAGGACAAGAGAATTGCGT+AGG | + | chr8_4:3237604-3237623 | None:intergenic | 45.0% | |
| !!! | TGCTTTTGAGGTGTTGGCAA+TGG | - | chr8_4:3237682-3237701 | Msa1307510:intron | 45.0% |
| GGTTACTGCTAAGTGCTAAC+TGG | - | chr8_4:3238344-3238363 | Msa1307510:intron | 45.0% | |
| AAGGGGCCAGATTCTCTAAA+AGG | - | chr8_4:3239488-3239507 | Msa1307510:CDS | 45.0% | |
| CACAACCAACAGCAATGCTA+AGG | - | chr8_4:3239513-3239532 | Msa1307510:CDS | 45.0% | |
| ! | TCTTTGAGAGGCTTTGCTCT+AGG | + | chr8_4:3239587-3239606 | None:intergenic | 45.0% |
| AGCACCATGACCATAACCAA+AGG | + | chr8_4:3239798-3239817 | None:intergenic | 45.0% | |
| ! | GGTTATGGTCATGGTGCTTT+TGG | - | chr8_4:3239800-3239819 | Msa1307510:CDS | 45.0% |
| !! | TTTATTTAATAGTTAATATA+TGG | - | chr8_4:3239410-3239429 | Msa1307510:CDS | 5.0% |
| !! | TTATTTAATAGTTAATATAT+GGG | - | chr8_4:3239411-3239430 | Msa1307510:CDS | 5.0% |
| ! | ATTCATGGTGGAGGATGAGG+AGG | + | chr8_4:3237203-3237222 | None:intergenic | 50.0% |
| ! | AGGATTCATGGTGGAGGATG+AGG | + | chr8_4:3237206-3237225 | None:intergenic | 50.0% |
| AGAAGGAGGATTCATGGTGG+AGG | + | chr8_4:3237212-3237231 | None:intergenic | 50.0% | |
| AGGAGAAGGAGGATTCATGG+TGG | + | chr8_4:3237215-3237234 | None:intergenic | 50.0% | |
| AGGAGGAGAAGGAGGATTCA+TGG | + | chr8_4:3237218-3237237 | None:intergenic | 50.0% | |
| ! | TCTCTAAGAGGAGGAGAAGG+AGG | + | chr8_4:3237226-3237245 | None:intergenic | 50.0% |
| ! | GCTTCTCTAAGAGGAGGAGA+AGG | + | chr8_4:3237229-3237248 | None:intergenic | 50.0% |
| ! | GGAAGAGCTTCTCTAAGAGG+AGG | + | chr8_4:3237235-3237254 | None:intergenic | 50.0% |
| CAGATGCATATGTGGGGACA+TGG | - | chr8_4:3239452-3239471 | Msa1307510:CDS | 50.0% | |
| ! | GGTAGCCTTAGCATTGCTGT+TGG | + | chr8_4:3239521-3239540 | None:intergenic | 50.0% |
| CCTGGTGCACAACAATAGCA+TGG | + | chr8_4:3239542-3239561 | None:intergenic | 50.0% | |
| CCATGCTATTGTTGTGCACC+AGG | - | chr8_4:3239539-3239558 | Msa1307510:CDS | 50.0% | |
| !! | TGAGAGGCTTTGCTCTAGGA+TGG | + | chr8_4:3239583-3239602 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGATGAGGAGGA+GGG | + | chr8_4:3237199-3237218 | None:intergenic | 55.0% |
| CTGGTGCAGCACAGTGTTCT+AGG | + | chr8_4:3238037-3238056 | None:intergenic | 55.0% | |
| ! | CATGGTGGAGGATGAGGAGG+AGG | + | chr8_4:3237200-3237219 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 3237163 | 3239853 | 3237163 | ID=Msa1307510;Name=Msa1307510 |
| chr8_4 | mRNA | 3237163 | 3239853 | 3237163 | ID=Msa1307510-mRNA-1;Parent=Msa1307510;Name=Msa1307510-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|0|0.5|1|1|0.5|2|0|281 |
| chr8_4 | exon | 3237163 | 3237525 | 3237163 | ID=Msa1307510-mRNA-1:exon:946;Parent=Msa1307510-mRNA-1 |
| chr8_4 | exon | 3239356 | 3239853 | 3239356 | ID=Msa1307510-mRNA-1:exon:945;Parent=Msa1307510-mRNA-1 |
| chr8_4 | five_prime_UTR | 3239836 | 3239853 | 3239836 | ID=Msa1307510-mRNA-1:five_prime_utr;Parent=Msa1307510-mRNA-1 |
| chr8_4 | CDS | 3239356 | 3239835 | 3239356 | ID=Msa1307510-mRNA-1:cds;Parent=Msa1307510-mRNA-1 |
| chr8_4 | CDS | 3237163 | 3237525 | 3237163 | ID=Msa1307510-mRNA-1:cds;Parent=Msa1307510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
