Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186000 | XP_013445064.1 | 81.735 | 438 | 11 | 2 | 1 | 369 | 138 | 575 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186000 | sp|Q8LP17|CCD1_PEA | 68.182 | 440 | 69 | 3 | 1 | 369 | 102 | 541 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1186000 | Msa1240200 | 0.878634 | 2.396918e-69 | -8.615850e-47 |
| Msa1186000 | Msa1240230 | 0.847450 | 1.147585e-59 | -8.615850e-47 |
| Msa1186000 | Msa1320640 | 0.815630 | 8.376139e-52 | -8.615850e-47 |
| Msa1186000 | Msa1392550 | 0.896753 | 2.725426e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186000 | MtrunA17_Chr8g0352301 | 81.735 | 438 | 11 | 2 | 1 | 369 | 138 | 575 | 0.0 | 701 |
| Msa1186000 | MtrunA17_Chr8g0352261 | 79.452 | 438 | 21 | 2 | 1 | 369 | 138 | 575 | 0.0 | 688 |
| Msa1186000 | MtrunA17_Chr8g0352311 | 74.658 | 438 | 42 | 2 | 1 | 369 | 139 | 576 | 0.0 | 651 |
| Msa1186000 | MtrunA17_Chr8g0352321 | 68.864 | 440 | 66 | 3 | 1 | 369 | 101 | 540 | 0.0 | 587 |
| Msa1186000 | MtrunA17_Chr2g0312951 | 32.791 | 430 | 217 | 13 | 1 | 366 | 188 | 609 | 6.37e-62 | 209 |
| Msa1186000 | MtrunA17_Chr8g0376401 | 33.178 | 428 | 214 | 13 | 1 | 366 | 188 | 605 | 7.65e-59 | 200 |
| Msa1186000 | MtrunA17_Chr5g0407951 | 29.083 | 447 | 209 | 12 | 1 | 365 | 157 | 577 | 1.72e-50 | 177 |
| Msa1186000 | MtrunA17_Chr5g0407941 | 29.519 | 437 | 215 | 13 | 1 | 363 | 156 | 573 | 1.02e-48 | 172 |
| Msa1186000 | MtrunA17_Chr5g0407931 | 28.315 | 445 | 214 | 10 | 1 | 365 | 197 | 616 | 3.75e-48 | 172 |
| Msa1186000 | MtrunA17_Chr3g0140121 | 29.570 | 372 | 169 | 14 | 71 | 358 | 216 | 578 | 3.25e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186000 | AT3G63520.1 | 64.384 | 438 | 82 | 5 | 1 | 367 | 102 | 536 | 0.0 | 539 |
| Msa1186000 | AT1G78390.1 | 33.953 | 430 | 211 | 10 | 1 | 367 | 236 | 655 | 8.98e-66 | 220 |
| Msa1186000 | AT1G30100.1 | 32.947 | 431 | 218 | 11 | 1 | 367 | 166 | 589 | 3.56e-64 | 214 |
| Msa1186000 | AT3G14440.1 | 32.791 | 430 | 217 | 11 | 1 | 366 | 176 | 597 | 1.53e-61 | 208 |
| Msa1186000 | AT3G24220.1 | 31.973 | 441 | 206 | 12 | 1 | 366 | 154 | 575 | 1.43e-59 | 202 |
| Msa1186000 | AT4G18350.1 | 30.303 | 429 | 231 | 11 | 1 | 366 | 159 | 582 | 1.77e-54 | 189 |
| Msa1186000 | AT4G19170.1 | 30.000 | 440 | 223 | 12 | 1 | 365 | 165 | 594 | 1.72e-52 | 184 |
Find 107 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGCATTCTTCTTGTTTA+AGG | 0.084809 | 8_1:+23899260 | None:intergenic |
| CGAAAATTACGCAATATTTA+TGG | 0.106835 | 8_1:-23898245 | Msa1186000:CDS |
| TCTTCTTCAGAATCGGTTTC+TGG | 0.147566 | 8_1:+23897139 | None:intergenic |
| ATTAAGGATCTTCCTGTTAA+AGG | 0.212037 | 8_1:-23900054 | Msa1186000:five_prime_UTR |
| AAAATACTTGATGTTTCTTA+TGG | 0.216705 | 8_1:-23899071 | Msa1186000:CDS |
| ATCCCTCCTCTGAGTGAAAA+TGG | 0.255045 | 8_1:+23900228 | None:intergenic |
| GACACCAAAACGAGCTTTCT+TGG | 0.264898 | 8_1:+23898044 | None:intergenic |
| TGGATCTTCCTGTGTACTTT+AGG | 0.275718 | 8_1:-23898225 | Msa1186000:CDS |
| AGTTGTAATGCTGTCTAATA+TGG | 0.280308 | 8_1:+23897297 | None:intergenic |
| AGCAAATAAACACACCATTA+TGG | 0.282253 | 8_1:+23897956 | None:intergenic |
| TTATGGAATATGAAGCAATT+TGG | 0.283716 | 8_1:+23897973 | None:intergenic |
| TTCTATTTCTGCAGGTTTGA+TGG | 0.299000 | 8_1:-23899494 | Msa1186000:intron |
| GGTTTGATCTTTACACAAAT+AGG | 0.302078 | 8_1:+23900249 | None:intergenic |
| CTTTGTCATCACTGGATTGC+TGG | 0.302688 | 8_1:-23900111 | Msa1186000:five_prime_UTR |
| TTAACAGGAAGATCCTTAAT+AGG | 0.304030 | 8_1:+23900057 | None:intergenic |
| AGATGAGACACCTCCTATTA+AGG | 0.320799 | 8_1:-23900070 | Msa1186000:five_prime_UTR |
| TTCAAAAGCTGTTGATTTGT+TGG | 0.325206 | 8_1:-23900169 | Msa1186000:five_prime_UTR |
| GGGACGCGTGGGATGTAAAT+AGG | 0.333839 | 8_1:+23897160 | None:intergenic |
| TTGAGTGCCAAACCTGATTT+CGG | 0.334319 | 8_1:-23897256 | Msa1186000:CDS |
| CTTGATGTTTCTTATGGAAC+TGG | 0.335359 | 8_1:-23899065 | Msa1186000:CDS |
| CTTCTTCAGAATCGGTTTCT+GGG | 0.337418 | 8_1:+23897140 | None:intergenic |
| TATGTGTACACCGAGTTTAA+TGG | 0.342119 | 8_1:-23900402 | Msa1186000:five_prime_UTR |
| ATGAATTGCAGAATGATTCA+TGG | 0.345194 | 8_1:-23899340 | Msa1186000:intron |
| ATCTGTTTACACATCTTTGT+AGG | 0.360877 | 8_1:-23896211 | Msa1186000:three_prime_UTR |
| CTATTGCAGGATTGCTTGAA+TGG | 0.363351 | 8_1:-23899799 | Msa1186000:intron |
| ATGATGGATTTACCAGTATA+AGG | 0.367353 | 8_1:+23898621 | None:intergenic |
| GGGTCTACTTGGACTTCTAA+TGG | 0.369162 | 8_1:-23899123 | Msa1186000:CDS |
| CTGTCAACATAATTATAGTT+TGG | 0.369425 | 8_1:+23896257 | None:intergenic |
| TTGGATGAGAAGTGAAATAA+TGG | 0.384814 | 8_1:+23898652 | None:intergenic |
| AATTGCTTCATATTCCATAA+TGG | 0.387800 | 8_1:-23897970 | Msa1186000:intron |
| AGGAAACAGAAGTATGTATA+TGG | 0.393243 | 8_1:-23897322 | Msa1186000:CDS |
| TCAACCAAGAAAGCTCGTTT+TGG | 0.397155 | 8_1:-23898048 | Msa1186000:CDS |
| TCCTGTTAAAGGACACCTTC+CGG | 0.400200 | 8_1:-23900043 | Msa1186000:intron |
| ATTCTTCACTTTGTCATCAC+TGG | 0.406737 | 8_1:-23900119 | Msa1186000:five_prime_UTR |
| ACCGGAAGGTGTCCTTTAAC+AGG | 0.408230 | 8_1:+23900042 | None:intergenic |
| GTTTCTTATGGAACTGGAAC+AGG | 0.408695 | 8_1:-23899059 | Msa1186000:intron |
| GTTTGGCTTGTTCTTGCAGT+TGG | 0.411419 | 8_1:+23896274 | None:intergenic |
| TCCATCATCTTCTTCAGAAT+CGG | 0.418255 | 8_1:+23897132 | None:intergenic |
| TTCTGCAGGTTTGATGGAGA+TGG | 0.418544 | 8_1:-23899488 | Msa1186000:intron |
| GCTTGAATGGAGAGTTTGTC+AGG | 0.422666 | 8_1:-23899786 | Msa1186000:five_prime_UTR |
| CTCCCGTCGCTGGATATCAT+TGG | 0.423893 | 8_1:-23899741 | Msa1186000:intron |
| GGCAATTCTACAACTGCAAC+TGG | 0.426544 | 8_1:+23896930 | None:intergenic |
| ACGGGAGAAAACTTCGGATT+AGG | 0.427486 | 8_1:+23899757 | None:intergenic |
| GAAGTTGGAGGAAATGTTCA+TGG | 0.434198 | 8_1:-23897220 | Msa1186000:CDS |
| TTGTACATGATGAAAATACT+AGG | 0.447103 | 8_1:-23897096 | Msa1186000:intron |
| GGCAAAATCATGCACCATGA+TGG | 0.450102 | 8_1:+23898273 | None:intergenic |
| ATATTAGACAGCATTACAAC+TGG | 0.450765 | 8_1:-23897295 | Msa1186000:CDS |
| AAACCATATGGAACTCTTTG+AGG | 0.453564 | 8_1:+23896909 | None:intergenic |
| GGCAAAACCAAGCTTGAAGT+TGG | 0.456425 | 8_1:-23897235 | Msa1186000:CDS |
| GTTCATGGTATCTATGACTT+GGG | 0.458278 | 8_1:-23897205 | Msa1186000:CDS |
| CTCAAGTAGATAACATCGTA+TGG | 0.462204 | 8_1:-23896125 | Msa1186000:three_prime_UTR |
| CTTAAACAAGAAGAATGCTT+TGG | 0.462385 | 8_1:-23899259 | Msa1186000:CDS |
| CATGGTTTGCGCATCAAAGA+TGG | 0.465009 | 8_1:-23899322 | Msa1186000:CDS |
| ATTTCCTCCAACTTCAAGCT+TGG | 0.466482 | 8_1:+23897228 | None:intergenic |
| AGCTAATGCTTGGGAGGAGG+AGG | 0.473190 | 8_1:-23897800 | Msa1186000:CDS |
| GGAGATGTCAAGGGTCTACT+TGG | 0.480304 | 8_1:-23899134 | Msa1186000:CDS |
| AAGAAGGCATGAAAACCATA+TGG | 0.483990 | 8_1:+23896897 | None:intergenic |
| AAACAAGAAGAATGCTTTGG+AGG | 0.484154 | 8_1:-23899256 | Msa1186000:CDS |
| ACAATATTATGACAAGAGAT+TGG | 0.485727 | 8_1:-23898676 | Msa1186000:CDS |
| TTGCCTCAAAGAGTTCCATA+TGG | 0.490409 | 8_1:-23896912 | Msa1186000:CDS |
| TGGAGGCTGTAAATTTATGA+AGG | 0.491369 | 8_1:-23899239 | Msa1186000:intron |
| CAGATCGACGCAGCGTTGTA+CGG | 0.502437 | 8_1:+23896229 | None:intergenic |
| CAGGTCTTGTATATCACAAT+GGG | 0.504961 | 8_1:-23898937 | Msa1186000:CDS |
| TGTCCAATTTCAGCTAATAC+AGG | 0.510396 | 8_1:-23898956 | Msa1186000:intron |
| TCCTGTGTACTTTAGGCCAA+AGG | 0.519329 | 8_1:-23898218 | Msa1186000:intron |
| TGTTCATGGTATCTATGACT+TGG | 0.521006 | 8_1:-23897206 | Msa1186000:CDS |
| TCTGCAGGTTTGATGGAGAT+GGG | 0.527664 | 8_1:-23899487 | Msa1186000:intron |
| ACTAGCTAATGCTTGGGAGG+AGG | 0.529242 | 8_1:-23897803 | Msa1186000:intron |
| GCAAAATCATGCACCATGAT+GGG | 0.530157 | 8_1:+23898274 | None:intergenic |
| GAATCGGTTTCTGGGACGCG+TGG | 0.530639 | 8_1:+23897148 | None:intergenic |
| TCATGCCTTCTTTCTGACAG+AGG | 0.531055 | 8_1:-23896886 | Msa1186000:intron |
| TTCACTAGCTAATGCTTGGG+AGG | 0.535402 | 8_1:-23897806 | Msa1186000:intron |
| ACCGATTCTGAAGAAGATGA+TGG | 0.537019 | 8_1:-23897133 | Msa1186000:CDS |
| GTGGAACCAAAACCAAGAAA+AGG | 0.539039 | 8_1:-23900198 | Msa1186000:five_prime_UTR |
| CATCTTTAGCATATCGAGGT+AGG | 0.546060 | 8_1:+23898022 | None:intergenic |
| ACAAACCTCTGTCAGAAAGA+AGG | 0.550757 | 8_1:+23896881 | None:intergenic |
| AATGGAGAGTTTGTCAGGGT+GGG | 0.552427 | 8_1:-23899781 | Msa1186000:five_prime_UTR |
| TACCAATGATATCCAGCGAC+GGG | 0.554371 | 8_1:+23899739 | None:intergenic |
| GGAGGTGTCTCATCTTTGAC+AGG | 0.555200 | 8_1:+23900078 | None:intergenic |
| CCGACTGAAGAATCTAGACT+TGG | 0.557261 | 8_1:-23897755 | Msa1186000:CDS |
| TCTCACGAAATGAGAAACAT+AGG | 0.558744 | 8_1:+23899291 | None:intergenic |
| GCAGTAACATAAGCAGTAGC+AGG | 0.559017 | 8_1:-23900344 | Msa1186000:five_prime_UTR |
| TCAAGTAGATAACATCGTAT+GGG | 0.565206 | 8_1:-23896124 | Msa1186000:three_prime_UTR |
| TACAATATCAGATCCCATCA+TGG | 0.567803 | 8_1:-23898287 | Msa1186000:intron |
| CATGGTCAGCGAGGATGTCA+AGG | 0.572348 | 8_1:-23897731 | Msa1186000:CDS |
| AAAACCAAGCTTGAAGTTGG+AGG | 0.573189 | 8_1:-23897232 | Msa1186000:CDS |
| TTTCAGATTGGAGATGTCAA+GGG | 0.574258 | 8_1:-23899143 | Msa1186000:intron |
| GATGGTAATTTGCATACACT+TGG | 0.580492 | 8_1:-23898702 | Msa1186000:CDS |
| CAAGTAGATAACATCGTATG+GGG | 0.582500 | 8_1:-23896123 | None:intergenic |
| AAGATGATAAGCTCATAAGA+TGG | 0.586222 | 8_1:-23898005 | Msa1186000:CDS |
| ACAGGAAGATCCTTAATAGG+AGG | 0.591560 | 8_1:+23900060 | None:intergenic |
| TGTACCACGGTAACTTCTCA+AGG | 0.592432 | 8_1:+23900314 | None:intergenic |
| AATCGGTTTCTGGGACGCGT+GGG | 0.593961 | 8_1:+23897149 | None:intergenic |
| ACAGGTCTTGTATATCACAA+TGG | 0.598621 | 8_1:-23898938 | Msa1186000:CDS |
| CTTGAATGGAGAGTTTGTCA+GGG | 0.604774 | 8_1:-23899785 | Msa1186000:five_prime_UTR |
| CCAAGTCTAGATTCTTCAGT+CGG | 0.615166 | 8_1:+23897755 | None:intergenic |
| TTATCATCTTTAGCATATCG+AGG | 0.636693 | 8_1:+23898018 | None:intergenic |
| GAATGGAGAGTTTGTCAGGG+TGG | 0.641408 | 8_1:-23899782 | Msa1186000:five_prime_UTR |
| CCAGCGACGGGAGAAAACTT+CGG | 0.645402 | 8_1:+23899751 | None:intergenic |
| TTACCAATGATATCCAGCGA+CGG | 0.657115 | 8_1:+23899738 | None:intergenic |
| ACCTTTGGCCTAAAGTACAC+AGG | 0.658603 | 8_1:+23898217 | None:intergenic |
| TATTAGACAGCATTACAACT+GGG | 0.675970 | 8_1:-23897294 | Msa1186000:CDS |
| GAAGAATCTAGACTTGGACA+TGG | 0.692460 | 8_1:-23897749 | Msa1186000:CDS |
| AGACTTGGACATGGTCAGCG+AGG | 0.698435 | 8_1:-23897740 | Msa1186000:CDS |
| ACTTGAAGACTTGTGTACCA+CGG | 0.708216 | 8_1:+23900301 | None:intergenic |
| AAGTAGATAACATCGTATGG+GGG | 0.721243 | 8_1:-23896122 | None:intergenic |
| AACACCTTGAGAAGTTACCG+TGG | 0.741009 | 8_1:-23900318 | Msa1186000:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAAAAATTCATATAAA+AGG | + | chr8_1:23898750-23898769 | None:intergenic | 10.0% |
| !!! | ATTTACATATAGTTACTTTT+AGG | - | chr8_1:23897009-23897028 | Msa1186000:intron | 15.0% |
| !! | TCAAATATATATATGGTTAA+AGG | + | chr8_1:23897125-23897144 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTTAACAGTAAA+AGG | + | chr8_1:23897187-23897206 | None:intergenic | 15.0% |
| !! | TTAAAAAAGATATTAACAGA+AGG | - | chr8_1:23897194-23897213 | Msa1186000:CDS | 15.0% |
| !! | AGAAAGTAAAAAAATATAGA+AGG | - | chr8_1:23897362-23897381 | Msa1186000:intron | 15.0% |
| !!! | TCATTTTCTTAAAATATTAG+TGG | - | chr8_1:23898113-23898132 | Msa1186000:intron | 15.0% |
| !! | ATTCATCATATTATATTAAG+AGG | + | chr8_1:23898649-23898668 | None:intergenic | 15.0% |
| !!! | TTTCTAATTATGTTTTAAGA+TGG | - | chr8_1:23899154-23899173 | Msa1186000:intron | 15.0% |
| !!! | TTTTTCCTTGTATAGTTATA+AGG | - | chr8_1:23896872-23896891 | Msa1186000:intron | 20.0% |
| !! | TCAAGCATCAAATATATATA+TGG | + | chr8_1:23897132-23897151 | None:intergenic | 20.0% |
| !! | TATATATTTGATGCTTGATT+AGG | - | chr8_1:23897134-23897153 | Msa1186000:CDS | 20.0% |
| !! | AAAATACTTGATGTTTCTTA+TGG | - | chr8_1:23897501-23897520 | Msa1186000:intron | 20.0% |
| !!! | CATAAATATTGCGTAATTTT+CGG | + | chr8_1:23898329-23898348 | None:intergenic | 20.0% |
| !!! | ATTTTCTATAGATTTTCCTA+GGG | - | chr8_1:23899051-23899070 | Msa1186000:intron | 20.0% |
| !! | ATATAGCAAAATACATGTTA+TGG | + | chr8_1:23899220-23899239 | None:intergenic | 20.0% |
| !!! | CTATGACATGATTTAATTTT+AGG | - | chr8_1:23899522-23899541 | Msa1186000:intron | 20.0% |
| !! | TTGAATTGTTTAACATAGAA+CGG | - | chr8_1:23899830-23899849 | Msa1186000:intron | 20.0% |
| !!! | TTTTCATATAATGTGCTTAT+TGG | + | chr8_1:23900031-23900050 | None:intergenic | 20.0% |
| !!! | CTCATTTTTTCTAAAGAAAA+AGG | + | chr8_1:23900102-23900121 | None:intergenic | 20.0% |
| !!! | ACATTTTAGTCCATTAAACT+CGG | + | chr8_1:23896183-23896202 | None:intergenic | 25.0% |
| ! | TGAAACCTTATAACTATACA+AGG | + | chr8_1:23896880-23896899 | None:intergenic | 25.0% |
| !!! | ACATATAGTTACTTTTAGGA+AGG | - | chr8_1:23897013-23897032 | Msa1186000:intron | 25.0% |
| !! | GTTTGGTATTTAAGTTTATC+TGG | - | chr8_1:23897035-23897054 | Msa1186000:intron | 25.0% |
| !!! | AGTAAAAGGTATTCGTTATT+AGG | + | chr8_1:23897173-23897192 | None:intergenic | 25.0% |
| !!! | GCTATTAAAGTTTTTGAAGA+TGG | - | chr8_1:23897852-23897871 | Msa1186000:intron | 25.0% |
| ! | ACAATATTATGACAAGAGAT+TGG | - | chr8_1:23897896-23897915 | Msa1186000:intron | 25.0% |
| !!! | GATTAAGTTGACTGATTTAA+TGG | - | chr8_1:23897986-23898005 | Msa1186000:CDS | 25.0% |
| ! | AAATAAATATCTTGTGTGCA+GGG | - | chr8_1:23898170-23898189 | Msa1186000:intron | 25.0% |
| ! | ATTACTCTGTATGTGATATA+TGG | + | chr8_1:23898229-23898248 | None:intergenic | 25.0% |
| ! | TACAGAGTAATTTCAAAAGA+TGG | - | chr8_1:23898238-23898257 | Msa1186000:CDS | 25.0% |
| ! | CGAAAATTACGCAATATTTA+TGG | - | chr8_1:23898327-23898346 | Msa1186000:intron | 25.0% |
| !!! | AATTTGTTAATCATATCGCT+TGG | - | chr8_1:23898417-23898436 | Msa1186000:intron | 25.0% |
| ! | TTATGGAATATGAAGCAATT+TGG | + | chr8_1:23898602-23898621 | None:intergenic | 25.0% |
| ! | AATTGCTTCATATTCCATAA+TGG | - | chr8_1:23898602-23898621 | Msa1186000:intron | 25.0% |
| ! | AATTTGAATGAAATCTTTCC+AGG | - | chr8_1:23898972-23898991 | Msa1186000:intron | 25.0% |
| !! | CATTTTCTATAGATTTTCCT+AGG | - | chr8_1:23899050-23899069 | Msa1186000:intron | 25.0% |
| !! | AAATACATGTTATGGACTTT+TGG | + | chr8_1:23899212-23899231 | None:intergenic | 25.0% |
| !! | TTTGCTATATTCATTTCATC+AGG | - | chr8_1:23899230-23899249 | Msa1186000:intron | 25.0% |
| ! | TTGTACATGATGAAAATACT+AGG | - | chr8_1:23899476-23899495 | Msa1186000:intron | 25.0% |
| ! | AGTCAGAAATATAGAGAATT+TGG | + | chr8_1:23899504-23899523 | None:intergenic | 25.0% |
| ! | AGTTTAAACAATAATACCAC+AGG | - | chr8_1:23899574-23899593 | Msa1186000:intron | 25.0% |
| ! | AACATAGTATAAATGAGCAA+AGG | + | chr8_1:23899764-23899783 | None:intergenic | 25.0% |
| ! | TTTAGATTGAATGAAAGAGA+AGG | - | chr8_1:23899782-23899801 | Msa1186000:five_prime_UTR | 25.0% |
| ! | GAAAAGAAAAAGAAAGAAGA+CGG | + | chr8_1:23899900-23899919 | None:intergenic | 25.0% |
| !!! | TTCATATTTTGGTGTTGAAA+TGG | + | chr8_1:23899922-23899941 | None:intergenic | 25.0% |
| ! | ATGCATGTTTATTATTGAGT+TGG | - | chr8_1:23899949-23899968 | Msa1186000:intron | 25.0% |
| ! | CTGTCAACATAATTATAGTT+TGG | + | chr8_1:23900318-23900337 | None:intergenic | 25.0% |
| GGTTTGATCTTTACACAAAT+AGG | + | chr8_1:23896326-23896345 | None:intergenic | 30.0% | |
| ! | TTTGAACTGAAACCTTTTCT+TGG | + | chr8_1:23896389-23896408 | None:intergenic | 30.0% |
| !! | TTCAAAAGCTGTTGATTTGT+TGG | - | chr8_1:23896403-23896422 | Msa1186000:intron | 30.0% |
| TTAACAGGAAGATCCTTAAT+AGG | + | chr8_1:23896518-23896537 | None:intergenic | 30.0% | |
| ATTAAGGATCTTCCTGTTAA+AGG | - | chr8_1:23896518-23896537 | Msa1186000:intron | 30.0% | |
| AGATGTTCAAATATATACCG+TGG | - | chr8_1:23896631-23896650 | Msa1186000:intron | 30.0% | |
| TGTTTACCTGTAATACAATC+TGG | - | chr8_1:23896702-23896721 | Msa1186000:intron | 30.0% | |
| ATACTGAGAAGCAATACATA+CGG | + | chr8_1:23896979-23896998 | None:intergenic | 30.0% | |
| !!! | TAGTTACTTTTAGGAAGGTT+TGG | - | chr8_1:23897018-23897037 | Msa1186000:intron | 30.0% |
| TATTAACAGAAGGTTGCATT+TGG | - | chr8_1:23897204-23897223 | Msa1186000:CDS | 30.0% | |
| ATGAATTGCAGAATGATTCA+TGG | - | chr8_1:23897232-23897251 | Msa1186000:CDS | 30.0% | |
| ! | CAAAGCATTCTTCTTGTTTA+AGG | + | chr8_1:23897315-23897334 | None:intergenic | 30.0% |
| CTTAAACAAGAAGAATGCTT+TGG | - | chr8_1:23897313-23897332 | Msa1186000:CDS | 30.0% | |
| ! | TTTTTCTCTCAACGTTTGTA+TGG | + | chr8_1:23897478-23897497 | None:intergenic | 30.0% |
| !! | AGAAACGAAAAGTACTAACA+TGG | + | chr8_1:23897691-23897710 | None:intergenic | 30.0% |
| ACTTTGTTCTATTTAGTCCA+CGG | + | chr8_1:23897729-23897748 | None:intergenic | 30.0% | |
| TTGGATGAGAAGTGAAATAA+TGG | + | chr8_1:23897923-23897942 | None:intergenic | 30.0% | |
| ! | CCAGTATAAGGATCAATTTT+TGG | + | chr8_1:23897942-23897961 | None:intergenic | 30.0% |
| CCAAAAATTGATCCTTATAC+TGG | - | chr8_1:23897939-23897958 | Msa1186000:intron | 30.0% | |
| !! | ATGATGGATTTACCAGTATA+AGG | + | chr8_1:23897954-23897973 | None:intergenic | 30.0% |
| AATCACTTATGTGAAGATGA+TGG | + | chr8_1:23897970-23897989 | None:intergenic | 30.0% | |
| CAAATAAATATCTTGTGTGC+AGG | - | chr8_1:23898169-23898188 | Msa1186000:intron | 30.0% | |
| AATAAATATCTTGTGTGCAG+GGG | - | chr8_1:23898171-23898190 | Msa1186000:intron | 30.0% | |
| TCTGATATTGTAATTGGAAC+AGG | + | chr8_1:23898277-23898296 | None:intergenic | 30.0% | |
| ATGGGATCTGATATTGTAAT+TGG | + | chr8_1:23898283-23898302 | None:intergenic | 30.0% | |
| ! | TATTGCGTAATTTTCGGTTA+TGG | + | chr8_1:23898323-23898342 | None:intergenic | 30.0% |
| TTATCATCTTTAGCATATCG+AGG | + | chr8_1:23898557-23898576 | None:intergenic | 30.0% | |
| AAGATGATAAGCTCATAAGA+TGG | - | chr8_1:23898567-23898586 | Msa1186000:intron | 30.0% | |
| AGCAAATAAACACACCATTA+TGG | + | chr8_1:23898619-23898638 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACTAGCTAATGCT+TGG | - | chr8_1:23898762-23898781 | Msa1186000:intron | 30.0% |
| ! | TTTTTCACTAGCTAATGCTT+GGG | - | chr8_1:23898763-23898782 | Msa1186000:intron | 30.0% |
| ATGAGGTTTAACATGAAAAC+CGG | - | chr8_1:23899001-23899020 | Msa1186000:intron | 30.0% | |
| !! | TTTCTTTTGAGAAGCTTTAC+CGG | + | chr8_1:23899023-23899042 | None:intergenic | 30.0% |
| AGCTTCTCAAAAGAAACTAT+CGG | - | chr8_1:23899027-23899046 | Msa1186000:intron | 30.0% | |
| ! | AGGAAACAGAAGTATGTATA+TGG | - | chr8_1:23899250-23899269 | Msa1186000:CDS | 30.0% |
| AGTTGTAATGCTGTCTAATA+TGG | + | chr8_1:23899278-23899297 | None:intergenic | 30.0% | |
| ATATTAGACAGCATTACAAC+TGG | - | chr8_1:23899277-23899296 | Msa1186000:CDS | 30.0% | |
| TATTAGACAGCATTACAACT+GGG | - | chr8_1:23899278-23899297 | Msa1186000:CDS | 30.0% | |
| TGTTTAAACTCACTCTGTTA+GGG | + | chr8_1:23899564-23899583 | None:intergenic | 30.0% | |
| TTGTTTAAACTCACTCTGTT+AGG | + | chr8_1:23899565-23899584 | None:intergenic | 30.0% | |
| ATTGAATGAAAGAGAAGGAA+CGG | - | chr8_1:23899787-23899806 | Msa1186000:five_prime_UTR | 30.0% | |
| TTGTTTAACATAGAACGGAA+AGG | - | chr8_1:23899835-23899854 | Msa1186000:intron | 30.0% | |
| CAACACCAAAATATGAACAA+TGG | - | chr8_1:23899925-23899944 | Msa1186000:intron | 30.0% | |
| ! | GCATTCCATTGTTCATATTT+TGG | + | chr8_1:23899933-23899952 | None:intergenic | 30.0% |
| GAACAGAATAAACTATACTC+AGG | + | chr8_1:23900127-23900146 | None:intergenic | 30.0% | |
| ATCTGTTTACACATCTTTGT+AGG | - | chr8_1:23900361-23900380 | Msa1186000:five_prime_UTR | 30.0% | |
| TATGTGTACACCGAGTTTAA+TGG | - | chr8_1:23896170-23896189 | Msa1186000:three_prime_UTR | 35.0% | |
| ! | ATCAAACCATTTTCACTCAG+AGG | - | chr8_1:23896338-23896357 | Msa1186000:intron | 35.0% |
| ! | CTGAAACCTTTTCTTGGTTT+TGG | + | chr8_1:23896383-23896402 | None:intergenic | 35.0% |
| ATTCTTCACTTTGTCATCAC+TGG | - | chr8_1:23896453-23896472 | Msa1186000:intron | 35.0% | |
| AAACACAAACAATGCTTCCA+CGG | + | chr8_1:23896651-23896670 | None:intergenic | 35.0% | |
| CTAATGCCAGATTGTATTAC+AGG | + | chr8_1:23896711-23896730 | None:intergenic | 35.0% | |
| TCTGGCATTAGAACAATATC+AGG | - | chr8_1:23896720-23896739 | Msa1186000:intron | 35.0% | |
| AATGGTTAGTGATGAGTGAT+AGG | + | chr8_1:23896747-23896766 | None:intergenic | 35.0% | |
| ! | AACCATTTGAAGTCTATTGC+AGG | - | chr8_1:23896760-23896779 | Msa1186000:intron | 35.0% |
| ATCCTGCAATAGACTTCAAA+TGG | + | chr8_1:23896765-23896784 | None:intergenic | 35.0% | |
| !! | CTTTCCATTTCTATTTCTGC+AGG | - | chr8_1:23897070-23897089 | Msa1186000:intron | 35.0% |
| CAAACCTGCAGAAATAGAAA+TGG | + | chr8_1:23897077-23897096 | None:intergenic | 35.0% | |
| !! | TTCTATTTCTGCAGGTTTGA+TGG | - | chr8_1:23897078-23897097 | Msa1186000:intron | 35.0% |
| TCTCACGAAATGAGAAACAT+AGG | + | chr8_1:23897284-23897303 | None:intergenic | 35.0% | |
| AAACAAGAAGAATGCTTTGG+AGG | - | chr8_1:23897316-23897335 | Msa1186000:CDS | 35.0% | |
| TGGAGGCTGTAAATTTATGA+AGG | - | chr8_1:23897333-23897352 | Msa1186000:intron | 35.0% | |
| !!! | CTTGCATGTCATTTTCAGAT+TGG | - | chr8_1:23897417-23897436 | Msa1186000:intron | 35.0% |
| ! | TTTTCAGATTGGAGATGTCA+AGG | - | chr8_1:23897428-23897447 | Msa1186000:intron | 35.0% |
| TTTCAGATTGGAGATGTCAA+GGG | - | chr8_1:23897429-23897448 | Msa1186000:intron | 35.0% | |
| CTTGATGTTTCTTATGGAAC+TGG | - | chr8_1:23897507-23897526 | Msa1186000:intron | 35.0% | |
| TGTCCAATTTCAGCTAATAC+AGG | - | chr8_1:23897616-23897635 | Msa1186000:intron | 35.0% | |
| AGACCTGTATTAGCTGAAAT+TGG | + | chr8_1:23897622-23897641 | None:intergenic | 35.0% | |
| ! | ACAGGTCTTGTATATCACAA+TGG | - | chr8_1:23897634-23897653 | Msa1186000:intron | 35.0% |
| ! | CAGGTCTTGTATATCACAAT+GGG | - | chr8_1:23897635-23897654 | Msa1186000:intron | 35.0% |
| ! | GTGGACTAAATAGAACAAAG+TGG | - | chr8_1:23897728-23897747 | Msa1186000:CDS | 35.0% |
| ! | GATGGTAATTTGCATACACT+TGG | - | chr8_1:23897870-23897889 | Msa1186000:intron | 35.0% |
| ACTCTGTATGTGATATATGG+CGG | + | chr8_1:23898226-23898245 | None:intergenic | 35.0% | |
| TACAATATCAGATCCCATCA+TGG | - | chr8_1:23898285-23898304 | Msa1186000:intron | 35.0% | |
| AGAAAAACTTGCCATACCTT+TGG | + | chr8_1:23898373-23898392 | None:intergenic | 35.0% | |
| TTGTTAATCATATCGCTTGG+TGG | - | chr8_1:23898420-23898439 | Msa1186000:intron | 35.0% | |
| TGTTAATCATTCCACTTTGC+AGG | - | chr8_1:23898463-23898482 | Msa1186000:intron | 35.0% | |
| ATCTTTCCAGGTATGAAATG+AGG | - | chr8_1:23898984-23899003 | Msa1186000:intron | 35.0% | |
| GTTAAACCTCATTTCATACC+TGG | + | chr8_1:23898993-23899012 | None:intergenic | 35.0% | |
| TGTTCATGGTATCTATGACT+TGG | - | chr8_1:23899366-23899385 | Msa1186000:intron | 35.0% | |
| GTTCATGGTATCTATGACTT+GGG | - | chr8_1:23899367-23899386 | Msa1186000:intron | 35.0% | |
| TCCATCATCTTCTTCAGAAT+CGG | + | chr8_1:23899443-23899462 | None:intergenic | 35.0% | |
| AAACCATATGGAACTCTTTG+AGG | + | chr8_1:23899666-23899685 | None:intergenic | 35.0% | |
| ! | AAGAAGGCATGAAAACCATA+TGG | + | chr8_1:23899678-23899697 | None:intergenic | 35.0% |
| AATGAGCAAAGGAAAAAGAG+AGG | + | chr8_1:23899753-23899772 | None:intergenic | 35.0% | |
| !!! | GAGTTTTAGATTGAATGGGA+TGG | + | chr8_1:23899878-23899897 | None:intergenic | 35.0% |
| !!! | GACGGAGTTTTAGATTGAAT+GGG | + | chr8_1:23899882-23899901 | None:intergenic | 35.0% |
| !!! | AGACGGAGTTTTAGATTGAA+TGG | + | chr8_1:23899883-23899902 | None:intergenic | 35.0% |
| !! | CATTGTGCATTTTCAGGATA+GGG | + | chr8_1:23900004-23900023 | None:intergenic | 35.0% |
| !! | ACATTGTGCATTTTCAGGAT+AGG | + | chr8_1:23900005-23900024 | None:intergenic | 35.0% |
| ATCCTGAAAATGCACAATGT+AGG | - | chr8_1:23900005-23900024 | Msa1186000:intron | 35.0% | |
| AAAGGGTGGAAAACAAAAAG+GGG | + | chr8_1:23900223-23900242 | None:intergenic | 35.0% | |
| GAAAGGGTGGAAAACAAAAA+GGG | + | chr8_1:23900224-23900243 | None:intergenic | 35.0% | |
| GCACTTGAACAAAAAGGAAA+GGG | + | chr8_1:23900240-23900259 | None:intergenic | 35.0% | |
| TGCACTTGAACAAAAAGGAA+AGG | + | chr8_1:23900241-23900260 | None:intergenic | 35.0% | |
| CAGAATGCACTTGAACAAAA+AGG | + | chr8_1:23900246-23900265 | None:intergenic | 35.0% | |
| CTCAAGTAGATAACATCGTA+TGG | - | chr8_1:23900447-23900466 | Msa1186000:five_prime_UTR | 35.0% | |
| ACTTGAAGACTTGTGTACCA+CGG | + | chr8_1:23896274-23896293 | None:intergenic | 40.0% | |
| ! | AAACCATTTTCACTCAGAGG+AGG | - | chr8_1:23896341-23896360 | Msa1186000:intron | 40.0% |
| ! | AACCATTTTCACTCAGAGGA+GGG | - | chr8_1:23896342-23896361 | Msa1186000:intron | 40.0% |
| GTGGAACCAAAACCAAGAAA+AGG | - | chr8_1:23896374-23896393 | Msa1186000:intron | 40.0% | |
| AGATGAGACACCTCCTATTA+AGG | - | chr8_1:23896502-23896521 | Msa1186000:intron | 40.0% | |
| ACAGGAAGATCCTTAATAGG+AGG | + | chr8_1:23896515-23896534 | None:intergenic | 40.0% | |
| CAACCACTTATGTCACTAAC+CGG | + | chr8_1:23896551-23896570 | None:intergenic | 40.0% | |
| GTGTCGCAACTCATTAATCA+CGG | - | chr8_1:23896603-23896622 | Msa1186000:intron | 40.0% | |
| CTATTGCAGGATTGCTTGAA+TGG | - | chr8_1:23896773-23896792 | Msa1186000:intron | 40.0% | |
| CTTGAATGGAGAGTTTGTCA+GGG | - | chr8_1:23896787-23896806 | Msa1186000:intron | 40.0% | |
| TTACCAATGATATCCAGCGA+CGG | + | chr8_1:23896837-23896856 | None:intergenic | 40.0% | |
| ATGAGAACTTGCACAGATCT+AGG | - | chr8_1:23896915-23896934 | Msa1186000:CDS | 40.0% | |
| GTTTCTTATGGAACTGGAAC+AGG | - | chr8_1:23897513-23897532 | Msa1186000:intron | 40.0% | |
| ! | CTGTTATATCTGAAATGCCG+TGG | - | chr8_1:23897709-23897728 | Msa1186000:CDS | 40.0% |
| ! | CTTGAGTTGTATAGCAGAAG+TGG | + | chr8_1:23897807-23897826 | None:intergenic | 40.0% |
| ATGACATCAACCTGAAGTGT+CGG | + | chr8_1:23898029-23898048 | None:intergenic | 40.0% | |
| GCAGGGGAAATGTTTACATT+TGG | - | chr8_1:23898187-23898206 | Msa1186000:intron | 40.0% | |
| GCAAAATCATGCACCATGAT+GGG | + | chr8_1:23898301-23898320 | None:intergenic | 40.0% | |
| TGGATCTTCCTGTGTACTTT+AGG | - | chr8_1:23898347-23898366 | Msa1186000:intron | 40.0% | |
| TGTACTTTAGGCCAAAGGTA+TGG | - | chr8_1:23898359-23898378 | Msa1186000:intron | 40.0% | |
| ! | ATCGCTTGGTGGAAATCAAA+TGG | - | chr8_1:23898431-23898450 | Msa1186000:intron | 40.0% |
| TCATTCCACTTTGCAGGAAA+TGG | - | chr8_1:23898469-23898488 | Msa1186000:intron | 40.0% | |
| ! | TCAACCAAGAAAGCTCGTTT+TGG | - | chr8_1:23898524-23898543 | Msa1186000:intron | 40.0% |
| CATCTTTAGCATATCGAGGT+AGG | + | chr8_1:23898553-23898572 | None:intergenic | 40.0% | |
| CCAAGTCTAGATTCTTCAGT+CGG | + | chr8_1:23898820-23898839 | None:intergenic | 40.0% | |
| GAAGAATCTAGACTTGGACA+TGG | - | chr8_1:23898823-23898842 | Msa1186000:intron | 40.0% | |
| GTGTATCTTTCATTCACCCT+AGG | + | chr8_1:23899070-23899089 | None:intergenic | 40.0% | |
| AGGGTGAATGAAAGATACAC+CGG | - | chr8_1:23899070-23899089 | Msa1186000:CDS | 40.0% | |
| TTGAGTGCCAAACCTGATTT+CGG | - | chr8_1:23899316-23899335 | Msa1186000:CDS | 40.0% | |
| AAAACCAAGCTTGAAGTTGG+AGG | - | chr8_1:23899340-23899359 | Msa1186000:intron | 40.0% | |
| ATTTCCTCCAACTTCAAGCT+TGG | + | chr8_1:23899347-23899366 | None:intergenic | 40.0% | |
| GAAGTTGGAGGAAATGTTCA+TGG | - | chr8_1:23899352-23899371 | Msa1186000:intron | 40.0% | |
| ! | CTTCTTCAGAATCGGTTTCT+GGG | + | chr8_1:23899435-23899454 | None:intergenic | 40.0% |
| ! | TCTTCTTCAGAATCGGTTTC+TGG | + | chr8_1:23899436-23899455 | None:intergenic | 40.0% |
| ! | ACCGATTCTGAAGAAGATGA+TGG | - | chr8_1:23899439-23899458 | Msa1186000:intron | 40.0% |
| TTGCCTCAAAGAGTTCCATA+TGG | - | chr8_1:23899660-23899679 | Msa1186000:intron | 40.0% | |
| ACAAACCTCTGTCAGAAAGA+AGG | + | chr8_1:23899694-23899713 | None:intergenic | 40.0% | |
| GAGAAGGAACGGATCATTAA+AGG | - | chr8_1:23899798-23899817 | Msa1186000:intron | 40.0% | |
| !! | TATTGAGTTGGTCACTTGAC+TGG | - | chr8_1:23899961-23899980 | Msa1186000:intron | 40.0% |
| GGAAAGGGTGGAAAACAAAA+AGG | + | chr8_1:23900225-23900244 | None:intergenic | 40.0% | |
| CTTGAACAAAAAGGAAAGGG+TGG | + | chr8_1:23900237-23900256 | None:intergenic | 40.0% | |
| TTCTTCATGACTCTCTTCAC+AGG | - | chr8_1:23900274-23900293 | Msa1186000:five_prime_UTR | 40.0% | |
| GCAGTAACATAAGCAGTAGC+AGG | - | chr8_1:23896228-23896247 | Msa1186000:three_prime_UTR | 45.0% | |
| AACACCTTGAGAAGTTACCG+TGG | - | chr8_1:23896254-23896273 | Msa1186000:exon | 45.0% | |
| TGTACCACGGTAACTTCTCA+AGG | + | chr8_1:23896261-23896280 | None:intergenic | 45.0% | |
| ATCCCTCCTCTGAGTGAAAA+TGG | + | chr8_1:23896347-23896366 | None:intergenic | 45.0% | |
| ! | ACTCAGAGGAGGGATTTTGA+AGG | - | chr8_1:23896352-23896371 | Msa1186000:intron | 45.0% |
| CTTTGTCATCACTGGATTGC+TGG | - | chr8_1:23896461-23896480 | Msa1186000:intron | 45.0% | |
| TCCTGTTAAAGGACACCTTC+CGG | - | chr8_1:23896529-23896548 | Msa1186000:intron | 45.0% | |
| CACTTATGTCACTAACCGGA+AGG | + | chr8_1:23896547-23896566 | None:intergenic | 45.0% | |
| CTTCCGGTTAGTGACATAAG+TGG | - | chr8_1:23896545-23896564 | Msa1186000:intron | 45.0% | |
| GCTTGAATGGAGAGTTTGTC+AGG | - | chr8_1:23896786-23896805 | Msa1186000:intron | 45.0% | |
| AATGGAGAGTTTGTCAGGGT+GGG | - | chr8_1:23896791-23896810 | Msa1186000:intron | 45.0% | |
| ACGGGAGAAAACTTCGGATT+AGG | + | chr8_1:23896818-23896837 | None:intergenic | 45.0% | |
| TACCAATGATATCCAGCGAC+GGG | + | chr8_1:23896836-23896855 | None:intergenic | 45.0% | |
| TTCTGCAGGTTTGATGGAGA+TGG | - | chr8_1:23897084-23897103 | Msa1186000:intron | 45.0% | |
| TCTGCAGGTTTGATGGAGAT+GGG | - | chr8_1:23897085-23897104 | Msa1186000:intron | 45.0% | |
| ! | CATGGTTTGCGCATCAAAGA+TGG | - | chr8_1:23897250-23897269 | Msa1186000:CDS | 45.0% |
| GGGTCTACTTGGACTTCTAA+TGG | - | chr8_1:23897449-23897468 | Msa1186000:intron | 45.0% | |
| ATATGTAGCTCCGACACTTC+AGG | - | chr8_1:23898016-23898035 | Msa1186000:CDS | 45.0% | |
| GGCAAAATCATGCACCATGA+TGG | + | chr8_1:23898302-23898321 | None:intergenic | 45.0% | |
| TCCTGTGTACTTTAGGCCAA+AGG | - | chr8_1:23898354-23898373 | Msa1186000:intron | 45.0% | |
| ACCTTTGGCCTAAAGTACAC+AGG | + | chr8_1:23898358-23898377 | None:intergenic | 45.0% | |
| CTTCACCATTTCCTGCAAAG+TGG | + | chr8_1:23898477-23898496 | None:intergenic | 45.0% | |
| GACACCAAAACGAGCTTTCT+TGG | + | chr8_1:23898531-23898550 | None:intergenic | 45.0% | |
| TTCACTAGCTAATGCTTGGG+AGG | - | chr8_1:23898766-23898785 | Msa1186000:intron | 45.0% | |
| CCGACTGAAGAATCTAGACT+TGG | - | chr8_1:23898817-23898836 | Msa1186000:intron | 45.0% | |
| TGAATGAAAGATACACCGGC+AGG | - | chr8_1:23899074-23899093 | Msa1186000:CDS | 45.0% | |
| !! | GGCTGGTTTAAATTACCTGC+CGG | + | chr8_1:23899092-23899111 | None:intergenic | 45.0% |
| TCGCAGATTGCGCAAAATAG+CGG | + | chr8_1:23899113-23899132 | None:intergenic | 45.0% | |
| ! | GGTTTTGCCGAAATCAGGTT+TGG | + | chr8_1:23899326-23899345 | None:intergenic | 45.0% |
| !!! | AGCTTGGTTTTGCCGAAATC+AGG | + | chr8_1:23899331-23899350 | None:intergenic | 45.0% |
| GGCAAAACCAAGCTTGAAGT+TGG | - | chr8_1:23899337-23899356 | Msa1186000:intron | 45.0% | |
| CATGTACGAACGATTTCCTG+TGG | + | chr8_1:23899593-23899612 | None:intergenic | 45.0% | |
| GGCAATTCTACAACTGCAAC+TGG | + | chr8_1:23899645-23899664 | None:intergenic | 45.0% | |
| TCATGCCTTCTTTCTGACAG+AGG | - | chr8_1:23899686-23899705 | Msa1186000:intron | 45.0% | |
| ! | GGCCTACATTGTGCATTTTC+AGG | + | chr8_1:23900010-23900029 | None:intergenic | 45.0% |
| !! | GTTTGGCTTGTTCTTGCAGT+TGG | + | chr8_1:23900301-23900320 | None:intergenic | 45.0% |
| !! | CAGAGGAGGGATTTTGAAGG+TGG | - | chr8_1:23896355-23896374 | Msa1186000:intron | 50.0% |
| !! | GGAGGTGTCTCATCTTTGAC+AGG | + | chr8_1:23896497-23896516 | None:intergenic | 50.0% |
| !! | ACCGGAAGGTGTCCTTTAAC+AGG | + | chr8_1:23896533-23896552 | None:intergenic | 50.0% |
| GAATGGAGAGTTTGTCAGGG+TGG | - | chr8_1:23896790-23896809 | Msa1186000:intron | 50.0% | |
| GGAGATGTCAAGGGTCTACT+TGG | - | chr8_1:23897438-23897457 | Msa1186000:intron | 50.0% | |
| ACTAGCTAATGCTTGGGAGG+AGG | - | chr8_1:23898769-23898788 | Msa1186000:intron | 50.0% | |
| AGATTGCGCAAAATAGCGGC+TGG | + | chr8_1:23899109-23899128 | None:intergenic | 50.0% | |
| GGTGGAAAACAAAAAGGGGC+AGG | + | chr8_1:23900219-23900238 | None:intergenic | 50.0% | |
| CCAGCGACGGGAGAAAACTT+CGG | + | chr8_1:23896824-23896843 | None:intergenic | 55.0% | |
| CTCCCGTCGCTGGATATCAT+TGG | - | chr8_1:23896831-23896850 | Msa1186000:intron | 55.0% | |
| AGCTAATGCTTGGGAGGAGG+AGG | - | chr8_1:23898772-23898791 | Msa1186000:intron | 55.0% | |
| AGACTTGGACATGGTCAGCG+AGG | - | chr8_1:23898832-23898851 | Msa1186000:intron | 55.0% | |
| CATGGTCAGCGAGGATGTCA+AGG | - | chr8_1:23898841-23898860 | Msa1186000:intron | 55.0% | |
| GGGACGCGTGGGATGTAAAT+AGG | + | chr8_1:23899415-23899434 | None:intergenic | 55.0% | |
| !! | AATCGGTTTCTGGGACGCGT+GGG | + | chr8_1:23899426-23899445 | None:intergenic | 55.0% |
| CAGATCGACGCAGCGTTGTA+CGG | + | chr8_1:23900346-23900365 | None:intergenic | 55.0% | |
| ! | CCGAAGTTTTCTCCCGTCGC+TGG | - | chr8_1:23896821-23896840 | Msa1186000:intron | 60.0% |
| !! | GAATCGGTTTCTGGGACGCG+TGG | + | chr8_1:23899427-23899446 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 23896124 | 23900470 | 23896124 | ID=Msa1186000;Name=Msa1186000 |
| chr8_1 | mRNA | 23896124 | 23900470 | 23896124 | ID=Msa1186000-mRNA-1;Parent=Msa1186000;Name=Msa1186000-mRNA-1;_AED=0.33;_eAED=0.33;_QI=514|0.83|0.92|1|1|1|13|145|369 |
| chr8_1 | exon | 23896124 | 23896298 | 23896124 | ID=Msa1186000-mRNA-1:exon:8749;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23896887 | 23896998 | 23896887 | ID=Msa1186000-mRNA-1:exon:8748;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23897097 | 23897342 | 23897097 | ID=Msa1186000-mRNA-1:exon:8747;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23897703 | 23897820 | 23897703 | ID=Msa1186000-mRNA-1:exon:8746;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23897971 | 23898109 | 23897971 | ID=Msa1186000-mRNA-1:exon:8745;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23898219 | 23898298 | 23898219 | ID=Msa1186000-mRNA-1:exon:8744;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23898634 | 23898744 | 23898634 | ID=Msa1186000-mRNA-1:exon:8743;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23898903 | 23898965 | 23898903 | ID=Msa1186000-mRNA-1:exon:8742;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23899060 | 23899159 | 23899060 | ID=Msa1186000-mRNA-1:exon:8741;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23899240 | 23899351 | 23899240 | ID=Msa1186000-mRNA-1:exon:8740;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23899488 | 23899502 | 23899488 | ID=Msa1186000-mRNA-1:exon:8739;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23899742 | 23899812 | 23899742 | ID=Msa1186000-mRNA-1:exon:8738;Parent=Msa1186000-mRNA-1 |
| chr8_1 | exon | 23900044 | 23900470 | 23900044 | ID=Msa1186000-mRNA-1:exon:8737;Parent=Msa1186000-mRNA-1 |
| chr8_1 | five_prime_UTR | 23900044 | 23900470 | 23900044 | ID=Msa1186000-mRNA-1:five_prime_utr;Parent=Msa1186000-mRNA-1 |
| chr8_1 | five_prime_UTR | 23899742 | 23899812 | 23899742 | ID=Msa1186000-mRNA-1:five_prime_utr;Parent=Msa1186000-mRNA-1 |
| chr8_1 | five_prime_UTR | 23899488 | 23899502 | 23899488 | ID=Msa1186000-mRNA-1:five_prime_utr;Parent=Msa1186000-mRNA-1 |
| chr8_1 | five_prime_UTR | 23899351 | 23899351 | 23899351 | ID=Msa1186000-mRNA-1:five_prime_utr;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23899240 | 23899350 | 23899240 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23899060 | 23899159 | 23899060 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23898903 | 23898965 | 23898903 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23898634 | 23898744 | 23898634 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23898219 | 23898298 | 23898219 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23897971 | 23898109 | 23897971 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23897703 | 23897820 | 23897703 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23897097 | 23897342 | 23897097 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23896887 | 23896998 | 23896887 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | CDS | 23896269 | 23896298 | 23896269 | ID=Msa1186000-mRNA-1:cds;Parent=Msa1186000-mRNA-1 |
| chr8_1 | three_prime_UTR | 23896124 | 23896268 | 23896124 | ID=Msa1186000-mRNA-1:three_prime_utr;Parent=Msa1186000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
