Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0113060 | Msa1186450 | 0.872838 | 2.337590e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGGGTGTTTGTGGATC+TGG | 0.254382 | 8_1:+24747065 | Msa1186450:CDS |
| AATCAACGTGTTTGAAGCTT+TGG | 0.333073 | 8_1:+24747049 | Msa1186450:CDS |
| ATCAACGTGTTTGAAGCTTT+GGG | 0.394015 | 8_1:+24747050 | Msa1186450:CDS |
| TATGAAGACTAGATACTTGA+TGG | 0.414163 | 8_1:-24747204 | None:intergenic |
| CTTTGGGTGTTTGTGGATCT+GGG | 0.424338 | 8_1:+24747066 | Msa1186450:CDS |
| TTCACTTCAAGAACGAAGCT+TGG | 0.445881 | 8_1:+24747162 | Msa1186450:CDS |
| TTTGAAGCTTTGGGTGTTTG+TGG | 0.454771 | 8_1:+24747059 | Msa1186450:CDS |
| GAAGACTAGATACTTGATGG+AGG | 0.696684 | 8_1:-24747201 | None:intergenic |
| ACTTGATGGAGGACACAGAG+AGG | 0.696959 | 8_1:-24747190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTATTAAAAAAAAAT+TGG | + | chr8_1:24747273-24747292 | Msa1186450:intron | 0.0% |
| !! | ATTTATTAAAAAAAAATTGG+TGG | + | chr8_1:24747276-24747295 | Msa1186450:intron | 10.0% |
| !! | TTTATTAAAAAAAAATTGGT+GGG | + | chr8_1:24747277-24747296 | Msa1186450:intron | 10.0% |
| !!! | AACCTTAATTTTTTTTTTTA+TGG | + | chr8_1:24748809-24748828 | Msa1186450:intron | 10.0% |
| !! | AACCATAAAAAAAAAAATTA+AGG | - | chr8_1:24748814-24748833 | None:intergenic | 10.0% |
| !! | AAATAAGAATGAAGTAAAAA+GGG | - | chr8_1:24747251-24747270 | None:intergenic | 15.0% |
| !!! | AAACTTTGATTTTTTTTACT+AGG | - | chr8_1:24747550-24747569 | None:intergenic | 15.0% |
| !! | ATTTATAATACCCAAATAAA+CGG | - | chr8_1:24747869-24747888 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTTAGTAGTTTT+TGG | + | chr8_1:24747941-24747960 | Msa1186450:intron | 15.0% |
| !! | TATTTAATTATTTGTTTCCT+AGG | - | chr8_1:24747977-24747996 | None:intergenic | 15.0% |
| !! | CAAAAAAATTTGAAAATTTC+AGG | - | chr8_1:24748001-24748020 | None:intergenic | 15.0% |
| !!! | CTGAAATTTTCAAATTTTTT+TGG | + | chr8_1:24747999-24748018 | Msa1186450:intron | 15.0% |
| !! | TTTACACAATTTATTCTAAT+AGG | - | chr8_1:24749080-24749099 | None:intergenic | 15.0% |
| !! | AATATTCAAAATATAATGTG+AGG | - | chr8_1:24749603-24749622 | None:intergenic | 15.0% |
| !! | GAAATAAGAATGAAGTAAAA+AGG | - | chr8_1:24747252-24747271 | None:intergenic | 20.0% |
| !!! | AATATATTTGCCGTTTATTT+GGG | + | chr8_1:24747856-24747875 | Msa1186450:intron | 20.0% |
| !!! | TATTTTTTAGTAGTTTTTGG+AGG | + | chr8_1:24747944-24747963 | Msa1186450:intron | 20.0% |
| !! | GGCTCAATTAAAAAAAAAAT+TGG | + | chr8_1:24748020-24748039 | Msa1186450:intron | 20.0% |
| !! | CAAAAACAAATAAATAGTCA+TGG | - | chr8_1:24748440-24748459 | None:intergenic | 20.0% |
| !!! | CATGACTATTTATTTGTTTT+TGG | + | chr8_1:24748438-24748457 | Msa1186450:intron | 20.0% |
| !!! | GAAATTATTTTAAGATCTCT+TGG | + | chr8_1:24748658-24748677 | Msa1186450:intron | 20.0% |
| !! | CATAATACAAATTAGTCAAA+GGG | - | chr8_1:24748693-24748712 | None:intergenic | 20.0% |
| !! | ATATCTCAAGAATAAAGTAT+CGG | + | chr8_1:24748915-24748934 | Msa1186450:intron | 20.0% |
| !! | TTACCATATTTATAGACAAT+AGG | - | chr8_1:24749043-24749062 | None:intergenic | 20.0% |
| !!! | CTTTTAAGTTAGATGAATTT+AGG | + | chr8_1:24749337-24749356 | Msa1186450:intron | 20.0% |
| !! | CAAAATAAAACGAAATACAA+AGG | - | chr8_1:24749448-24749467 | None:intergenic | 20.0% |
| !!! | ATAGTTGGGTTTTGTTTTTT+GGG | + | chr8_1:24747743-24747762 | Msa1186450:intron | 25.0% |
| !! | AAGCAACAAAAAGTACAAAA+GGG | - | chr8_1:24747794-24747813 | None:intergenic | 25.0% |
| !! | AAAGCAACAAAAAGTACAAA+AGG | - | chr8_1:24747795-24747814 | None:intergenic | 25.0% |
| !! | GAATATATTTGCCGTTTATT+TGG | + | chr8_1:24747855-24747874 | Msa1186450:intron | 25.0% |
| ! | GTATATTTATAGTTGTTCCT+AGG | - | chr8_1:24748293-24748312 | None:intergenic | 25.0% |
| ! | GAACAACTATAAATATACCT+AGG | + | chr8_1:24748295-24748314 | Msa1186450:intron | 25.0% |
| !! | GAAGACTTTAGATTTACTTT+TGG | + | chr8_1:24748467-24748486 | Msa1186450:intron | 25.0% |
| !! | TTCTGTTATTTAGAATTGTG+TGG | + | chr8_1:24748512-24748531 | Msa1186450:intron | 25.0% |
| ! | ACATTTCCCACAAATTAAAT+TGG | - | chr8_1:24748584-24748603 | None:intergenic | 25.0% |
| ! | GCATAATACAAATTAGTCAA+AGG | - | chr8_1:24748694-24748713 | None:intergenic | 25.0% |
| ! | ACAAAAGTTTATTGAGTGAA+TGG | + | chr8_1:24748744-24748763 | Msa1186450:intron | 25.0% |
| ! | TTTATTGAGTGAATGGATAA+TGG | + | chr8_1:24748751-24748770 | Msa1186450:intron | 25.0% |
| ! | AAATTAAGGTTTACTGTCAT+CGG | - | chr8_1:24748800-24748819 | None:intergenic | 25.0% |
| !! | GGCTGAATTTTTCTTAAAAA+TGG | + | chr8_1:24748936-24748955 | Msa1186450:intron | 25.0% |
| ! | CTTAACACAATTTATGTCTA+AGG | - | chr8_1:24748976-24748995 | None:intergenic | 25.0% |
| ! | AGTCCTATTGTCTATAAATA+TGG | + | chr8_1:24749037-24749056 | Msa1186450:intron | 25.0% |
| ! | CTAAAAATTTATTGTTGCGT+TGG | + | chr8_1:24749499-24749518 | Msa1186450:intron | 25.0% |
| ! | CGATAAAAAAATATTCTGCA+TGG | - | chr8_1:24749632-24749651 | None:intergenic | 25.0% |
| TTTGTGTAATTGGATGAAGT+TGG | + | chr8_1:24747137-24747156 | Msa1186450:intron | 30.0% | |
| TATGAAGACTAGATACTTGA+TGG | - | chr8_1:24747207-24747226 | None:intergenic | 30.0% | |
| TAAGAATGAAGTAAAAAGGG+TGG | - | chr8_1:24747248-24747267 | None:intergenic | 30.0% | |
| !!! | TGTGATTTTTAGGACGTTTT+TGG | + | chr8_1:24747302-24747321 | Msa1186450:intron | 30.0% |
| AATAAAAACTGCTCACACAT+AGG | - | chr8_1:24747328-24747347 | None:intergenic | 30.0% | |
| ! | ATGTGTGAGCAGTTTTTATT+TGG | + | chr8_1:24747328-24747347 | Msa1186450:intron | 30.0% |
| !!! | TATTTGGTTTTGCTACTATG+AGG | + | chr8_1:24747344-24747363 | Msa1186450:intron | 30.0% |
| ! | GCATAGTTACTGTCAATTTT+TGG | + | chr8_1:24747381-24747400 | Msa1186450:intron | 30.0% |
| !! | TAGTTACTGTCAATTTTTGG+TGG | + | chr8_1:24747384-24747403 | Msa1186450:intron | 30.0% |
| !!! | AGTTACTGTCAATTTTTGGT+GGG | + | chr8_1:24747385-24747404 | Msa1186450:intron | 30.0% |
| GTTTACAATTACACAAGAAG+TGG | + | chr8_1:24747566-24747585 | Msa1186450:intron | 30.0% | |
| !! | TTTGGGTTTAGATTCTGTTT+TGG | + | chr8_1:24747682-24747701 | Msa1186450:intron | 30.0% |
| !!! | CATAGTTGGGTTTTGTTTTT+TGG | + | chr8_1:24747742-24747761 | Msa1186450:intron | 30.0% |
| AAATATATTCATCGACGAGA+AGG | - | chr8_1:24747845-24747864 | None:intergenic | 30.0% | |
| !! | TTTTTGGAGGAATATTTCCT+AGG | + | chr8_1:24747957-24747976 | Msa1186450:intron | 30.0% |
| AAGAAACATTGAAGTTAGCT+AGG | - | chr8_1:24748394-24748413 | None:intergenic | 30.0% | |
| !! | CTTTTGGTGTGAAATTATTG+TGG | + | chr8_1:24748483-24748502 | Msa1186450:intron | 30.0% |
| !! | TGGTCAACCAATTTAATTTG+TGG | + | chr8_1:24748574-24748593 | Msa1186450:intron | 30.0% |
| !! | GGTCAACCAATTTAATTTGT+GGG | + | chr8_1:24748575-24748594 | Msa1186450:intron | 30.0% |
| ! | TTGTGCTATCTACATTGATT+CGG | + | chr8_1:24748636-24748655 | Msa1186450:intron | 30.0% |
| !! | ATGGATAATGGTTTTTGACA+TGG | + | chr8_1:24748763-24748782 | Msa1186450:intron | 30.0% |
| !! | TGGATAATGGTTTTTGACAT+GGG | + | chr8_1:24748764-24748783 | Msa1186450:intron | 30.0% |
| TCTAAGAGAGTAAGAATACT+AGG | + | chr8_1:24749124-24749143 | Msa1186450:intron | 30.0% | |
| ! | AAAACATGTTAGCTTCTTGA+AGG | - | chr8_1:24749158-24749177 | None:intergenic | 30.0% |
| TATCACGCTAGAAAATAACA+TGG | - | chr8_1:24749237-24749256 | None:intergenic | 30.0% | |
| TCTGACATATTACAACATTG+TGG | + | chr8_1:24749390-24749409 | Msa1186450:intron | 30.0% | |
| !! | TTTGGGTTTTCGATTGAAGA+TGG | + | chr8_1:24747016-24747035 | Msa1186450:CDS | 35.0% |
| ! | TTGGGTTTTCGATTGAAGAT+GGG | + | chr8_1:24747017-24747036 | Msa1186450:CDS | 35.0% |
| ! | AATCAACGTGTTTGAAGCTT+TGG | + | chr8_1:24747049-24747068 | Msa1186450:CDS | 35.0% |
| ! | ATCAACGTGTTTGAAGCTTT+GGG | + | chr8_1:24747050-24747069 | Msa1186450:CDS | 35.0% |
| TGTGTTTGTGAGTAATCGAT+TGG | + | chr8_1:24747102-24747121 | Msa1186450:intron | 35.0% | |
| AGTAATCGATTGGAGGATTT+GGG | + | chr8_1:24747112-24747131 | Msa1186450:intron | 35.0% | |
| GATTTGGGTGTTTGTGTAAT+TGG | + | chr8_1:24747127-24747146 | Msa1186450:intron | 35.0% | |
| GGAGTTTACAACATCAATCA+TGG | - | chr8_1:24747465-24747484 | None:intergenic | 35.0% | |
| ATGTCTAGCCAAGAAGATAA+GGG | + | chr8_1:24747503-24747522 | Msa1186450:intron | 35.0% | |
| ! | ATGCTGTAGTGACAGATTTT+AGG | + | chr8_1:24747604-24747623 | Msa1186450:intron | 35.0% |
| !!! | ACAGATTTTAGGTTCTGTTC+TGG | + | chr8_1:24747615-24747634 | Msa1186450:intron | 35.0% |
| ! | TGTTGCTATTGCGTCATATT+TGG | + | chr8_1:24747664-24747683 | Msa1186450:intron | 35.0% |
| ! | GTTGCTATTGCGTCATATTT+GGG | + | chr8_1:24747665-24747684 | Msa1186450:intron | 35.0% |
| ! | TGTTGTTGCTATTGCATAGT+TGG | + | chr8_1:24747728-24747747 | Msa1186450:intron | 35.0% |
| ! | GTTGTTGCTATTGCATAGTT+GGG | + | chr8_1:24747729-24747748 | Msa1186450:intron | 35.0% |
| !!! | GGGTTTTGTTTTTTGGGTTT+AGG | + | chr8_1:24747749-24747768 | Msa1186450:intron | 35.0% |
| AAACTGTAATGTGTCAGTGA+TGG | + | chr8_1:24748182-24748201 | Msa1186450:intron | 35.0% | |
| ! | TTTTTGCAGGAATGTTTCCT+AGG | + | chr8_1:24748219-24748238 | Msa1186450:intron | 35.0% |
| ! | GTTTCCTAGGAAATTTTCCT+AGG | + | chr8_1:24748232-24748251 | Msa1186450:intron | 35.0% |
| TCCTAGCTAACATATTTCCT+CGG | + | chr8_1:24748261-24748280 | Msa1186450:intron | 35.0% | |
| TTAGCTAGGAAACATTTCCT+AGG | - | chr8_1:24748380-24748399 | None:intergenic | 35.0% | |
| ! | TTTCCGTTTCATGTGAGTTT+TGG | + | chr8_1:24748554-24748573 | Msa1186450:intron | 35.0% |
| TGACCAAAACTCACATGAAA+CGG | - | chr8_1:24748560-24748579 | None:intergenic | 35.0% | |
| AAACACCAGTAAGTACATGA+AGG | - | chr8_1:24748853-24748872 | None:intergenic | 35.0% | |
| TTAGCTTCTTGAAGGAATGA+AGG | - | chr8_1:24749150-24749169 | None:intergenic | 35.0% | |
| TCTAGCGTGATATGTAACTT+TGG | + | chr8_1:24749245-24749264 | Msa1186450:intron | 35.0% | |
| TTGGATTATGAGTTTGAGAG+AGG | + | chr8_1:24749264-24749283 | Msa1186450:intron | 35.0% | |
| ATTATGAGTTTGAGAGAGGT+TGG | + | chr8_1:24749268-24749287 | Msa1186450:intron | 35.0% | |
| TACAAAGGACATTCGCAAAT+AGG | - | chr8_1:24749433-24749452 | None:intergenic | 35.0% | |
| ! | TATTTTGTATACCTCCGATG+AGG | + | chr8_1:24749461-24749480 | Msa1186450:intron | 35.0% |
| !! | CGATTGAAGATGGGTTTTAG+AGG | + | chr8_1:24747026-24747045 | Msa1186450:CDS | 40.0% |
| !! | TTTGAAGCTTTGGGTGTTTG+TGG | + | chr8_1:24747059-24747078 | Msa1186450:CDS | 40.0% |
| GTTTGTGAGTAATCGATTGG+AGG | + | chr8_1:24747105-24747124 | Msa1186450:intron | 40.0% | |
| GAGTAATCGATTGGAGGATT+TGG | + | chr8_1:24747111-24747130 | Msa1186450:intron | 40.0% | |
| TTCACTTCAAGAACGAAGCT+TGG | + | chr8_1:24747162-24747181 | Msa1186450:CDS | 40.0% | |
| GAAGACTAGATACTTGATGG+AGG | - | chr8_1:24747204-24747223 | None:intergenic | 40.0% | |
| !! | TTGGTGGGTCTGTGATTTTT+AGG | + | chr8_1:24747292-24747311 | Msa1186450:intron | 40.0% |
| CATGGCTGTCAATACAATGA+AGG | - | chr8_1:24747486-24747505 | None:intergenic | 40.0% | |
| CTTATCTTCTTGGCTAGACA+TGG | - | chr8_1:24747504-24747523 | None:intergenic | 40.0% | |
| CATGTCTAGCCAAGAAGATA+AGG | + | chr8_1:24747502-24747521 | Msa1186450:intron | 40.0% | |
| CCTTCTTTCCCTTATCTTCT+TGG | - | chr8_1:24747514-24747533 | None:intergenic | 40.0% | |
| CCAAGAAGATAAGGGAAAGA+AGG | + | chr8_1:24747511-24747530 | Msa1186450:intron | 40.0% | |
| !!! | ATTTTAGGTTCTGTTCTGGC+TGG | + | chr8_1:24747619-24747638 | Msa1186450:intron | 40.0% |
| !!! | GGTTTAGATTCTGTTTTGGC+TGG | + | chr8_1:24747686-24747705 | Msa1186450:intron | 40.0% |
| !! | TTAGGTGTGCCGCTTATATA+CGG | + | chr8_1:24747767-24747786 | Msa1186450:intron | 40.0% |
| CAAAAGGGACCGTATATAAG+CGG | - | chr8_1:24747779-24747798 | None:intergenic | 40.0% | |
| CTCACCTAGGAAAATTTCCT+AGG | - | chr8_1:24748239-24748258 | None:intergenic | 40.0% | |
| ACCGAGGAAATATGTTAGCT+AGG | - | chr8_1:24748265-24748284 | None:intergenic | 40.0% | |
| TAGCTAACATATTTCCTCGG+TGG | + | chr8_1:24748264-24748283 | Msa1186450:intron | 40.0% | |
| AGCTAACATATTTCCTCGGT+GGG | + | chr8_1:24748265-24748284 | Msa1186450:intron | 40.0% | |
| !! | ATACCTAGGAAGTGTTTCCT+CGG | + | chr8_1:24748309-24748328 | Msa1186450:intron | 40.0% |
| ACCATGCATACCTAGGAATT+TGG | + | chr8_1:24748346-24748365 | Msa1186450:intron | 40.0% | |
| ACATGAAACGGAAACAGACA+AGG | - | chr8_1:24748548-24748567 | None:intergenic | 40.0% | |
| ! | TGGTTTTTGACATGGGACTA+AGG | + | chr8_1:24748771-24748790 | Msa1186450:intron | 40.0% |
| ! | AAGAGCACGCTCTATTTCAT+GGG | - | chr8_1:24749310-24749329 | None:intergenic | 40.0% |
| AAAGGACATTCGCAAATAGG+AGG | - | chr8_1:24749430-24749449 | None:intergenic | 40.0% | |
| CTTTGGGTGTTTGTGGATCT+GGG | + | chr8_1:24747066-24747085 | Msa1186450:CDS | 45.0% | |
| TACACAAGAAGTGGAGCCAA+AGG | + | chr8_1:24747575-24747594 | Msa1186450:intron | 45.0% | |
| ACTACAGCATCAGCAACCTT+TGG | - | chr8_1:24747594-24747613 | None:intergenic | 45.0% | |
| !!! | CTGGTTCTGATGCTGCATTT+TGG | + | chr8_1:24747638-24747657 | Msa1186450:intron | 45.0% |
| !!! | TTGCTTTTTCCGCGAGTTGT+GGG | + | chr8_1:24747808-24747827 | Msa1186450:intron | 45.0% |
| CTGTAATGTGTCAGTGATGG+CGG | + | chr8_1:24748185-24748204 | Msa1186450:intron | 45.0% | |
| !!! | GGCTTGGTGTAGTTTTTTGC+AGG | + | chr8_1:24748206-24748225 | Msa1186450:intron | 45.0% |
| TTTCCGAGGAAACACTTCCT+AGG | - | chr8_1:24748315-24748334 | None:intergenic | 45.0% | |
| TGTTTCCTCGGAAATGTCCT+AGG | + | chr8_1:24748321-24748340 | Msa1186450:intron | 45.0% | |
| CTAGGTATGCATGGTTTCCT+AGG | - | chr8_1:24748341-24748360 | None:intergenic | 45.0% | |
| CTAGGAAACCATGCATACCT+AGG | + | chr8_1:24748339-24748358 | Msa1186450:intron | 45.0% | |
| GCCAAATTCCTAGGTATGCA+TGG | - | chr8_1:24748350-24748369 | None:intergenic | 45.0% | |
| GGAAGAGAAGCCAAATTCCT+AGG | - | chr8_1:24748359-24748378 | None:intergenic | 45.0% | |
| ! | GGAATTTGGCTTCTCTTCCT+AGG | + | chr8_1:24748360-24748379 | Msa1186450:intron | 45.0% |
| CATGAAGGACACGCATACTT+AGG | - | chr8_1:24748838-24748857 | None:intergenic | 45.0% | |
| CGTGTCCTTCATGTACTTAC+TGG | + | chr8_1:24748845-24748864 | Msa1186450:intron | 45.0% | |
| ! | CAAGAGCACGCTCTATTTCA+TGG | - | chr8_1:24749311-24749330 | None:intergenic | 45.0% |
| !!! | TATTTAATTAACATAATTTT+AGG | + | chr8_1:24747911-24747930 | Msa1186450:intron | 5.0% |
| !!! | ATTTAATTAACATAATTTTA+GGG | + | chr8_1:24747912-24747931 | Msa1186450:intron | 5.0% |
| !!! | TTTAAAATTTGAAAATTTTT+TGG | + | chr8_1:24748050-24748069 | Msa1186450:intron | 5.0% |
| ! | GCTTTGGGTGTTTGTGGATC+TGG | + | chr8_1:24747065-24747084 | Msa1186450:CDS | 50.0% |
| ACTTGATGGAGGACACAGAG+AGG | - | chr8_1:24747193-24747212 | None:intergenic | 50.0% | |
| !! | CTGGCACTGATGCTGCATTT+AGG | + | chr8_1:24747705-24747724 | Msa1186450:intron | 50.0% |
| !!! | GTTGCTTTTTCCGCGAGTTG+TGG | + | chr8_1:24747807-24747826 | Msa1186450:intron | 50.0% |
| TAAGACACACCCACAACTCG+CGG | - | chr8_1:24747820-24747839 | None:intergenic | 50.0% | |
| GTTAGCTAGGACTCTCACCT+AGG | - | chr8_1:24748252-24748271 | None:intergenic | 50.0% | |
| ! | TATTTCCTCGGTGGGTTCCT+AGG | + | chr8_1:24748273-24748292 | Msa1186450:intron | 50.0% |
| GGTTTCCTAGGACATTTCCG+AGG | - | chr8_1:24748329-24748348 | None:intergenic | 50.0% | |
| TGTATACCTCCGATGAGGCT+CGG | + | chr8_1:24749466-24749485 | Msa1186450:intron | 50.0% | |
| CAACAACAACCGAGCCTCAT+CGG | - | chr8_1:24749478-24749497 | None:intergenic | 50.0% | |
| !! | ATGTGTCAGTGATGGCGGCT+TGG | + | chr8_1:24748190-24748209 | Msa1186450:intron | 55.0% |
| TTGTTCCTAGGAACCCACCG+AGG | - | chr8_1:24748281-24748300 | None:intergenic | 55.0% | |
| CAACAACCGAGCCTCATCGG+AGG | - | chr8_1:24749475-24749494 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24747014 | 24749850 | 24747014 | ID=Msa1186450;Name=Msa1186450 |
| chr8_1 | mRNA | 24747014 | 24749850 | 24747014 | ID=Msa1186450-mRNA-1;Parent=Msa1186450;Name=Msa1186450-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.5|0.33|0.5|4|0|59 |
| chr8_1 | exon | 24747014 | 24747087 | 24747014 | ID=Msa1186450-mRNA-1:exon:8951;Parent=Msa1186450-mRNA-1 |
| chr8_1 | exon | 24747156 | 24747228 | 24747156 | ID=Msa1186450-mRNA-1:exon:8952;Parent=Msa1186450-mRNA-1 |
| chr8_1 | exon | 24748906 | 24748911 | 24748906 | ID=Msa1186450-mRNA-1:exon:8953;Parent=Msa1186450-mRNA-1 |
| chr8_1 | exon | 24749824 | 24749850 | 24749824 | ID=Msa1186450-mRNA-1:exon:8954;Parent=Msa1186450-mRNA-1 |
| chr8_1 | CDS | 24747014 | 24747087 | 24747014 | ID=Msa1186450-mRNA-1:cds;Parent=Msa1186450-mRNA-1 |
| chr8_1 | CDS | 24747156 | 24747228 | 24747156 | ID=Msa1186450-mRNA-1:cds;Parent=Msa1186450-mRNA-1 |
| chr8_1 | CDS | 24748906 | 24748911 | 24748906 | ID=Msa1186450-mRNA-1:cds;Parent=Msa1186450-mRNA-1 |
| chr8_1 | CDS | 24749824 | 24749850 | 24749824 | ID=Msa1186450-mRNA-1:cds;Parent=Msa1186450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
