Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0113060 | Msa0393590 | 0.801469 | 8.873425e-49 | -8.615850e-47 |
| Msa0113060 | Msa1186450 | 0.872838 | 2.337590e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTTGACTGGTCTAAT+TGG | 0.220662 | 1_3:-28748452 | None:intergenic |
| GCTTTGGGTGTTTGTGGATC+TGG | 0.254382 | 1_3:+28746966 | Msa0113060:CDS |
| AATCAACGTGTTTGAAGCTT+TGG | 0.333073 | 1_3:+28746950 | Msa0113060:CDS |
| ATCAACGTGTTTGAAGCTTT+GGG | 0.394015 | 1_3:+28746951 | Msa0113060:CDS |
| ATGGCGTGGATTTGGTTTAG+AGG | 0.401205 | 1_3:-28748429 | None:intergenic |
| CTAATTGGATGGCGTGGATT+TGG | 0.401545 | 1_3:-28748437 | None:intergenic |
| TATGAAGACTAGATACTTGA+TGG | 0.414163 | 1_3:-28747105 | None:intergenic |
| CTTTGGGTGTTTGTGGATCT+GGG | 0.424338 | 1_3:+28746967 | Msa0113060:CDS |
| TTCACTTCAAGAACGAAGCT+TGG | 0.445881 | 1_3:+28747063 | Msa0113060:CDS |
| TTTGAAGCTTTGGGTGTTTG+TGG | 0.454771 | 1_3:+28746960 | Msa0113060:CDS |
| AGCACAATTAAAAGTGGGTT+AGG | 0.465015 | 1_3:+28748487 | Msa0113060:CDS |
| CTGTTGATATCATCTTTGAC+TGG | 0.510350 | 1_3:-28748461 | None:intergenic |
| CTTTGACTGGTCTAATTGGA+TGG | 0.512527 | 1_3:-28748448 | None:intergenic |
| CAGCCTAGCACAATTAAAAG+TGG | 0.527222 | 1_3:+28748481 | Msa0113060:CDS |
| AGCCTAGCACAATTAAAAGT+GGG | 0.582189 | 1_3:+28748482 | Msa0113060:CDS |
| ACTGGTCTAATTGGATGGCG+TGG | 0.622751 | 1_3:-28748443 | None:intergenic |
| GAAGACTAGATACTTGATGG+AGG | 0.696684 | 1_3:-28747102 | None:intergenic |
| ACTTGATGGAGGACACAGAG+AGG | 0.696959 | 1_3:-28747091 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTAAAAAAAAAAT+TGG | + | chr1_3:28747175-28747194 | Msa0113060:intron | 0.0% |
| !! | TTATTTATTAAAAAAAAAAT+TGG | + | chr1_3:28747175-28747194 | Msa0113060:intron | 0.0% |
| !! | TTTATTAAAAAAAAAATTGG+TGG | + | chr1_3:28747178-28747197 | Msa0113060:intron | 10.0% |
| !! | TTATTAAAAAAAAAATTGGT+GGG | + | chr1_3:28747179-28747198 | Msa0113060:intron | 10.0% |
| !! | TTTATTAAAAAAAAAATTGG+TGG | + | chr1_3:28747178-28747197 | Msa0113060:intron | 10.0% |
| !! | TTATTAAAAAAAAAATTGGT+GGG | + | chr1_3:28747179-28747198 | Msa0113060:intron | 10.0% |
| !! | AAATAAGAATGAAGTAAAAA+GGG | - | chr1_3:28747152-28747171 | None:intergenic | 15.0% |
| !!! | AAACTTTGATTTTTTTTACT+AGG | - | chr1_3:28747552-28747571 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTTAGTAGTTTT+TGG | + | chr1_3:28747943-28747962 | Msa0113060:intron | 15.0% |
| !! | TATTTAATTATTTGTTTCCT+AGG | - | chr1_3:28747979-28747998 | None:intergenic | 15.0% |
| !! | CAAAAAAATTTGAAAATTTC+AGG | - | chr1_3:28748003-28748022 | None:intergenic | 15.0% |
| !!! | CTGAAATTTTCAAATTTTTT+TGG | + | chr1_3:28748001-28748020 | Msa0113060:intron | 15.0% |
| !! | AAATAAGAATGAAGTAAAAA+GGG | - | chr1_3:28747152-28747171 | None:intergenic | 15.0% |
| !!! | AAACTTTGATTTTTTTTACT+AGG | - | chr1_3:28747552-28747571 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTTAGTAGTTTT+TGG | + | chr1_3:28747943-28747962 | Msa0113060:intron | 15.0% |
| !! | TATTTAATTATTTGTTTCCT+AGG | - | chr1_3:28747979-28747998 | None:intergenic | 15.0% |
| !! | CAAAAAAATTTGAAAATTTC+AGG | - | chr1_3:28748003-28748022 | None:intergenic | 15.0% |
| !!! | CTGAAATTTTCAAATTTTTT+TGG | + | chr1_3:28748001-28748020 | Msa0113060:intron | 15.0% |
| !! | GAAATAAGAATGAAGTAAAA+AGG | - | chr1_3:28747153-28747172 | None:intergenic | 20.0% |
| !!! | AATATATTTGCCGTTTATTT+GGG | + | chr1_3:28747858-28747877 | Msa0113060:intron | 20.0% |
| !! | ATTTCTAATACCCAAATAAA+CGG | - | chr1_3:28747871-28747890 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGTAGTTTTTGG+AGG | + | chr1_3:28747946-28747965 | Msa0113060:intron | 20.0% |
| !! | GAAATAAGAATGAAGTAAAA+AGG | - | chr1_3:28747153-28747172 | None:intergenic | 20.0% |
| !!! | AATATATTTGCCGTTTATTT+GGG | + | chr1_3:28747858-28747877 | Msa0113060:intron | 20.0% |
| !! | ATTTCTAATACCCAAATAAA+CGG | - | chr1_3:28747871-28747890 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGTAGTTTTTGG+AGG | + | chr1_3:28747946-28747965 | Msa0113060:intron | 20.0% |
| !!! | TGTGATTTTTAGGATGTTTT+TGG | + | chr1_3:28747204-28747223 | Msa0113060:intron | 25.0% |
| !!! | ATAGTTGGGTTTTGTTTTTT+GGG | + | chr1_3:28747745-28747764 | Msa0113060:intron | 25.0% |
| !! | AAGCAACAAAAAGTACAAAA+GGG | - | chr1_3:28747796-28747815 | None:intergenic | 25.0% |
| !! | AAAGCAACAAAAAGTACAAA+AGG | - | chr1_3:28747797-28747816 | None:intergenic | 25.0% |
| !! | GAATATATTTGCCGTTTATT+TGG | + | chr1_3:28747857-28747876 | Msa0113060:intron | 25.0% |
| ! | TGGCTCAATTCAAAAAAAAT+TGG | + | chr1_3:28748021-28748040 | Msa0113060:intron | 25.0% |
| ! | GTATATTTATAGTTGTTCCT+AGG | - | chr1_3:28748294-28748313 | None:intergenic | 25.0% |
| ! | GAACAACTATAAATATACCT+AGG | + | chr1_3:28748296-28748315 | Msa0113060:intron | 25.0% |
| !!! | TGTGATTTTTAGGATGTTTT+TGG | + | chr1_3:28747204-28747223 | Msa0113060:intron | 25.0% |
| !!! | ATAGTTGGGTTTTGTTTTTT+GGG | + | chr1_3:28747745-28747764 | Msa0113060:intron | 25.0% |
| !! | AAGCAACAAAAAGTACAAAA+GGG | - | chr1_3:28747796-28747815 | None:intergenic | 25.0% |
| !! | AAAGCAACAAAAAGTACAAA+AGG | - | chr1_3:28747797-28747816 | None:intergenic | 25.0% |
| !! | GAATATATTTGCCGTTTATT+TGG | + | chr1_3:28747857-28747876 | Msa0113060:intron | 25.0% |
| ! | TGGCTCAATTCAAAAAAAAT+TGG | + | chr1_3:28748021-28748040 | Msa0113060:intron | 25.0% |
| ! | GTATATTTATAGTTGTTCCT+AGG | - | chr1_3:28748294-28748313 | None:intergenic | 25.0% |
| ! | GAACAACTATAAATATACCT+AGG | + | chr1_3:28748296-28748315 | Msa0113060:intron | 25.0% |
| TTTGTGTAATTGGATGAAGT+TGG | + | chr1_3:28747038-28747057 | Msa0113060:intron | 30.0% | |
| TATGAAGACTAGATACTTGA+TGG | - | chr1_3:28747108-28747127 | None:intergenic | 30.0% | |
| TAAGAATGAAGTAAAAAGGG+TGG | - | chr1_3:28747149-28747168 | None:intergenic | 30.0% | |
| AATAAAAACTGCTCACACAT+AGG | - | chr1_3:28747230-28747249 | None:intergenic | 30.0% | |
| ! | ATGTGTGAGCAGTTTTTATT+TGG | + | chr1_3:28747230-28747249 | Msa0113060:intron | 30.0% |
| !!! | TATTTGGTTTTGCTACTATG+AGG | + | chr1_3:28747246-28747265 | Msa0113060:intron | 30.0% |
| ! | GCATAGTTACTGTCAATTTT+TGG | + | chr1_3:28747283-28747302 | Msa0113060:intron | 30.0% |
| !! | TAGTTACTGTCAATTTTTGG+TGG | + | chr1_3:28747286-28747305 | Msa0113060:intron | 30.0% |
| !!! | AGTTACTGTCAATTTTTGGT+GGG | + | chr1_3:28747287-28747306 | Msa0113060:intron | 30.0% |
| GTTTACAATTACACAAGAAG+TGG | + | chr1_3:28747568-28747587 | Msa0113060:intron | 30.0% | |
| ! | TGTTGCTATTGCATCATATT+TGG | + | chr1_3:28747666-28747685 | Msa0113060:intron | 30.0% |
| ! | GTTGCTATTGCATCATATTT+GGG | + | chr1_3:28747667-28747686 | Msa0113060:intron | 30.0% |
| !! | TTTGGGTTTAGATTCTGTTT+TGG | + | chr1_3:28747684-28747703 | Msa0113060:intron | 30.0% |
| !!! | CATAGTTGGGTTTTGTTTTT+TGG | + | chr1_3:28747744-28747763 | Msa0113060:intron | 30.0% |
| AAATATATTCATCGACGAGA+AGG | - | chr1_3:28747847-28747866 | None:intergenic | 30.0% | |
| !! | TTTTTGGAGGAATATTTCCT+AGG | + | chr1_3:28747959-28747978 | Msa0113060:intron | 30.0% |
| AAGAAACATTGAAGTTAGCT+AGG | - | chr1_3:28748395-28748414 | None:intergenic | 30.0% | |
| TTTGTGTAATTGGATGAAGT+TGG | + | chr1_3:28747038-28747057 | Msa0113060:intron | 30.0% | |
| TATGAAGACTAGATACTTGA+TGG | - | chr1_3:28747108-28747127 | None:intergenic | 30.0% | |
| TAAGAATGAAGTAAAAAGGG+TGG | - | chr1_3:28747149-28747168 | None:intergenic | 30.0% | |
| AATAAAAACTGCTCACACAT+AGG | - | chr1_3:28747230-28747249 | None:intergenic | 30.0% | |
| ! | ATGTGTGAGCAGTTTTTATT+TGG | + | chr1_3:28747230-28747249 | Msa0113060:intron | 30.0% |
| !!! | TATTTGGTTTTGCTACTATG+AGG | + | chr1_3:28747246-28747265 | Msa0113060:intron | 30.0% |
| ! | GCATAGTTACTGTCAATTTT+TGG | + | chr1_3:28747283-28747302 | Msa0113060:intron | 30.0% |
| !! | TAGTTACTGTCAATTTTTGG+TGG | + | chr1_3:28747286-28747305 | Msa0113060:intron | 30.0% |
| !!! | AGTTACTGTCAATTTTTGGT+GGG | + | chr1_3:28747287-28747306 | Msa0113060:intron | 30.0% |
| GTTTACAATTACACAAGAAG+TGG | + | chr1_3:28747568-28747587 | Msa0113060:intron | 30.0% | |
| ! | TGTTGCTATTGCATCATATT+TGG | + | chr1_3:28747666-28747685 | Msa0113060:intron | 30.0% |
| ! | GTTGCTATTGCATCATATTT+GGG | + | chr1_3:28747667-28747686 | Msa0113060:intron | 30.0% |
| !! | TTTGGGTTTAGATTCTGTTT+TGG | + | chr1_3:28747684-28747703 | Msa0113060:intron | 30.0% |
| !!! | CATAGTTGGGTTTTGTTTTT+TGG | + | chr1_3:28747744-28747763 | Msa0113060:intron | 30.0% |
| AAATATATTCATCGACGAGA+AGG | - | chr1_3:28747847-28747866 | None:intergenic | 30.0% | |
| !! | TTTTTGGAGGAATATTTCCT+AGG | + | chr1_3:28747959-28747978 | Msa0113060:intron | 30.0% |
| AAGAAACATTGAAGTTAGCT+AGG | - | chr1_3:28748395-28748414 | None:intergenic | 30.0% | |
| !! | TTTGGGTTTTCGATTGAAGA+TGG | + | chr1_3:28746917-28746936 | Msa0113060:CDS | 35.0% |
| ! | TTGGGTTTTCGATTGAAGAT+GGG | + | chr1_3:28746918-28746937 | Msa0113060:CDS | 35.0% |
| ! | AATCAACGTGTTTGAAGCTT+TGG | + | chr1_3:28746950-28746969 | Msa0113060:CDS | 35.0% |
| ! | ATCAACGTGTTTGAAGCTTT+GGG | + | chr1_3:28746951-28746970 | Msa0113060:CDS | 35.0% |
| TGTGTTTGTGAGTAATCGAT+TGG | + | chr1_3:28747003-28747022 | Msa0113060:intron | 35.0% | |
| AGTAATCGATTGGAGGATTT+GGG | + | chr1_3:28747013-28747032 | Msa0113060:intron | 35.0% | |
| GATTTGGGTGTTTGTGTAAT+TGG | + | chr1_3:28747028-28747047 | Msa0113060:intron | 35.0% | |
| GGAGTTTACAACATCAATCA+TGG | - | chr1_3:28747467-28747486 | None:intergenic | 35.0% | |
| ATGTCTAGCCAAGAAGATAA+GGG | + | chr1_3:28747505-28747524 | Msa0113060:intron | 35.0% | |
| ! | ATGCTGTAGTGACAGATTTT+AGG | + | chr1_3:28747606-28747625 | Msa0113060:intron | 35.0% |
| !!! | ACAGATTTTAGGTTCTGTTC+TGG | + | chr1_3:28747617-28747636 | Msa0113060:intron | 35.0% |
| ! | TGTTGTTGCTATTGCATAGT+TGG | + | chr1_3:28747730-28747749 | Msa0113060:intron | 35.0% |
| ! | GTTGTTGCTATTGCATAGTT+GGG | + | chr1_3:28747731-28747750 | Msa0113060:intron | 35.0% |
| !!! | GGGTTTTGTTTTTTGGGTTT+AGG | + | chr1_3:28747751-28747770 | Msa0113060:intron | 35.0% |
| AAACTGTAATGTGTCAGTGA+TGG | + | chr1_3:28748183-28748202 | Msa0113060:intron | 35.0% | |
| ! | TTTTTGCAGGAATGTTTCCT+AGG | + | chr1_3:28748220-28748239 | Msa0113060:intron | 35.0% |
| ! | GTTTCCTAGGAAATTTTCCT+AGG | + | chr1_3:28748233-28748252 | Msa0113060:intron | 35.0% |
| TCCTAGGTAACATATTTCCT+CGG | + | chr1_3:28748262-28748281 | Msa0113060:intron | 35.0% | |
| TTAGCTAGGAAACATTTCCT+AGG | - | chr1_3:28748381-28748400 | None:intergenic | 35.0% | |
| CTTCAATGTTTCTTGTAGAG+TGG | + | chr1_3:28748401-28748420 | Msa0113060:intron | 35.0% | |
| !! | TCATCTTTGACTGGTCTAAT+TGG | - | chr1_3:28748455-28748474 | None:intergenic | 35.0% |
| CTGTTGATATCATCTTTGAC+TGG | - | chr1_3:28748464-28748483 | None:intergenic | 35.0% | |
| AGCCTAGCACAATTAAAAGT+GGG | + | chr1_3:28748482-28748501 | Msa0113060:CDS | 35.0% | |
| !! | AACCCACTTTTAATTGTGCT+AGG | - | chr1_3:28748487-28748506 | None:intergenic | 35.0% |
| ! | AGCACAATTAAAAGTGGGTT+AGG | + | chr1_3:28748487-28748506 | Msa0113060:CDS | 35.0% |
| !! | GCACAATTAAAAGTGGGTTA+GGG | + | chr1_3:28748488-28748507 | Msa0113060:CDS | 35.0% |
| !! | TTTGGGTTTTCGATTGAAGA+TGG | + | chr1_3:28746917-28746936 | Msa0113060:CDS | 35.0% |
| ! | TTGGGTTTTCGATTGAAGAT+GGG | + | chr1_3:28746918-28746937 | Msa0113060:CDS | 35.0% |
| ! | AATCAACGTGTTTGAAGCTT+TGG | + | chr1_3:28746950-28746969 | Msa0113060:CDS | 35.0% |
| ! | ATCAACGTGTTTGAAGCTTT+GGG | + | chr1_3:28746951-28746970 | Msa0113060:CDS | 35.0% |
| TGTGTTTGTGAGTAATCGAT+TGG | + | chr1_3:28747003-28747022 | Msa0113060:intron | 35.0% | |
| AGTAATCGATTGGAGGATTT+GGG | + | chr1_3:28747013-28747032 | Msa0113060:intron | 35.0% | |
| GATTTGGGTGTTTGTGTAAT+TGG | + | chr1_3:28747028-28747047 | Msa0113060:intron | 35.0% | |
| GGAGTTTACAACATCAATCA+TGG | - | chr1_3:28747467-28747486 | None:intergenic | 35.0% | |
| ATGTCTAGCCAAGAAGATAA+GGG | + | chr1_3:28747505-28747524 | Msa0113060:intron | 35.0% | |
| ! | ATGCTGTAGTGACAGATTTT+AGG | + | chr1_3:28747606-28747625 | Msa0113060:intron | 35.0% |
| !!! | ACAGATTTTAGGTTCTGTTC+TGG | + | chr1_3:28747617-28747636 | Msa0113060:intron | 35.0% |
| ! | TGTTGTTGCTATTGCATAGT+TGG | + | chr1_3:28747730-28747749 | Msa0113060:intron | 35.0% |
| ! | GTTGTTGCTATTGCATAGTT+GGG | + | chr1_3:28747731-28747750 | Msa0113060:intron | 35.0% |
| !!! | GGGTTTTGTTTTTTGGGTTT+AGG | + | chr1_3:28747751-28747770 | Msa0113060:intron | 35.0% |
| AAACTGTAATGTGTCAGTGA+TGG | + | chr1_3:28748183-28748202 | Msa0113060:intron | 35.0% | |
| ! | TTTTTGCAGGAATGTTTCCT+AGG | + | chr1_3:28748220-28748239 | Msa0113060:intron | 35.0% |
| ! | GTTTCCTAGGAAATTTTCCT+AGG | + | chr1_3:28748233-28748252 | Msa0113060:intron | 35.0% |
| TCCTAGGTAACATATTTCCT+CGG | + | chr1_3:28748262-28748281 | Msa0113060:intron | 35.0% | |
| TTAGCTAGGAAACATTTCCT+AGG | - | chr1_3:28748381-28748400 | None:intergenic | 35.0% | |
| CTTCAATGTTTCTTGTAGAG+TGG | + | chr1_3:28748401-28748420 | Msa0113060:intron | 35.0% | |
| !! | TCATCTTTGACTGGTCTAAT+TGG | - | chr1_3:28748455-28748474 | None:intergenic | 35.0% |
| CTGTTGATATCATCTTTGAC+TGG | - | chr1_3:28748464-28748483 | None:intergenic | 35.0% | |
| AGCCTAGCACAATTAAAAGT+GGG | + | chr1_3:28748482-28748501 | Msa0113060:CDS | 35.0% | |
| !! | AACCCACTTTTAATTGTGCT+AGG | - | chr1_3:28748487-28748506 | None:intergenic | 35.0% |
| !! | CGATTGAAGATGGGTTTTAG+AGG | + | chr1_3:28746927-28746946 | Msa0113060:CDS | 40.0% |
| !! | TTTGAAGCTTTGGGTGTTTG+TGG | + | chr1_3:28746960-28746979 | Msa0113060:CDS | 40.0% |
| GTTTGTGAGTAATCGATTGG+AGG | + | chr1_3:28747006-28747025 | Msa0113060:intron | 40.0% | |
| GAGTAATCGATTGGAGGATT+TGG | + | chr1_3:28747012-28747031 | Msa0113060:intron | 40.0% | |
| TTCACTTCAAGAACGAAGCT+TGG | + | chr1_3:28747063-28747082 | Msa0113060:CDS | 40.0% | |
| GAAGACTAGATACTTGATGG+AGG | - | chr1_3:28747105-28747124 | None:intergenic | 40.0% | |
| !! | TTGGTGGGTCTGTGATTTTT+AGG | + | chr1_3:28747194-28747213 | Msa0113060:intron | 40.0% |
| CATGGCTGTCAATACAATGA+AGG | - | chr1_3:28747488-28747507 | None:intergenic | 40.0% | |
| CTTATCTTCTTGGCTAGACA+TGG | - | chr1_3:28747506-28747525 | None:intergenic | 40.0% | |
| CATGTCTAGCCAAGAAGATA+AGG | + | chr1_3:28747504-28747523 | Msa0113060:intron | 40.0% | |
| CCTTCTTTCCCTTATCTTCT+TGG | - | chr1_3:28747516-28747535 | None:intergenic | 40.0% | |
| CCAAGAAGATAAGGGAAAGA+AGG | + | chr1_3:28747513-28747532 | Msa0113060:intron | 40.0% | |
| !!! | ATTTTAGGTTCTGTTCTGGC+TGG | + | chr1_3:28747621-28747640 | Msa0113060:intron | 40.0% |
| !!! | GGTTTAGATTCTGTTTTGGC+TGG | + | chr1_3:28747688-28747707 | Msa0113060:intron | 40.0% |
| !! | TTAGGTGTGCCGCTTATATA+CGG | + | chr1_3:28747769-28747788 | Msa0113060:intron | 40.0% |
| CAAAAGGGACCGTATATAAG+CGG | - | chr1_3:28747781-28747800 | None:intergenic | 40.0% | |
| CTCACCTAGGAAAATTTCCT+AGG | - | chr1_3:28748240-28748259 | None:intergenic | 40.0% | |
| ACCGAGGAAATATGTTACCT+AGG | - | chr1_3:28748266-28748285 | None:intergenic | 40.0% | |
| TAGGTAACATATTTCCTCGG+TGG | + | chr1_3:28748265-28748284 | Msa0113060:intron | 40.0% | |
| AGGTAACATATTTCCTCGGT+GGG | + | chr1_3:28748266-28748285 | Msa0113060:intron | 40.0% | |
| !! | TTTTCGAGGAAACACTTCCT+AGG | - | chr1_3:28748316-28748335 | None:intergenic | 40.0% |
| TGTTTCCTCGAAAATGTCCT+AGG | + | chr1_3:28748322-28748341 | Msa0113060:intron | 40.0% | |
| ACCATGCATACCTAGGAATT+TGG | + | chr1_3:28748347-28748366 | Msa0113060:intron | 40.0% | |
| !! | CTTTGACTGGTCTAATTGGA+TGG | - | chr1_3:28748451-28748470 | None:intergenic | 40.0% |
| CAGCCTAGCACAATTAAAAG+TGG | + | chr1_3:28748481-28748500 | Msa0113060:CDS | 40.0% | |
| !! | CGATTGAAGATGGGTTTTAG+AGG | + | chr1_3:28746927-28746946 | Msa0113060:CDS | 40.0% |
| !! | TTTGAAGCTTTGGGTGTTTG+TGG | + | chr1_3:28746960-28746979 | Msa0113060:CDS | 40.0% |
| GTTTGTGAGTAATCGATTGG+AGG | + | chr1_3:28747006-28747025 | Msa0113060:intron | 40.0% | |
| GAGTAATCGATTGGAGGATT+TGG | + | chr1_3:28747012-28747031 | Msa0113060:intron | 40.0% | |
| TTCACTTCAAGAACGAAGCT+TGG | + | chr1_3:28747063-28747082 | Msa0113060:CDS | 40.0% | |
| GAAGACTAGATACTTGATGG+AGG | - | chr1_3:28747105-28747124 | None:intergenic | 40.0% | |
| !! | TTGGTGGGTCTGTGATTTTT+AGG | + | chr1_3:28747194-28747213 | Msa0113060:intron | 40.0% |
| CATGGCTGTCAATACAATGA+AGG | - | chr1_3:28747488-28747507 | None:intergenic | 40.0% | |
| CTTATCTTCTTGGCTAGACA+TGG | - | chr1_3:28747506-28747525 | None:intergenic | 40.0% | |
| CATGTCTAGCCAAGAAGATA+AGG | + | chr1_3:28747504-28747523 | Msa0113060:intron | 40.0% | |
| CCTTCTTTCCCTTATCTTCT+TGG | - | chr1_3:28747516-28747535 | None:intergenic | 40.0% | |
| CCAAGAAGATAAGGGAAAGA+AGG | + | chr1_3:28747513-28747532 | Msa0113060:intron | 40.0% | |
| !!! | ATTTTAGGTTCTGTTCTGGC+TGG | + | chr1_3:28747621-28747640 | Msa0113060:intron | 40.0% |
| !!! | GGTTTAGATTCTGTTTTGGC+TGG | + | chr1_3:28747688-28747707 | Msa0113060:intron | 40.0% |
| !! | TTAGGTGTGCCGCTTATATA+CGG | + | chr1_3:28747769-28747788 | Msa0113060:intron | 40.0% |
| CAAAAGGGACCGTATATAAG+CGG | - | chr1_3:28747781-28747800 | None:intergenic | 40.0% | |
| CTCACCTAGGAAAATTTCCT+AGG | - | chr1_3:28748240-28748259 | None:intergenic | 40.0% | |
| ACCGAGGAAATATGTTACCT+AGG | - | chr1_3:28748266-28748285 | None:intergenic | 40.0% | |
| TAGGTAACATATTTCCTCGG+TGG | + | chr1_3:28748265-28748284 | Msa0113060:intron | 40.0% | |
| AGGTAACATATTTCCTCGGT+GGG | + | chr1_3:28748266-28748285 | Msa0113060:intron | 40.0% | |
| !! | TTTTCGAGGAAACACTTCCT+AGG | - | chr1_3:28748316-28748335 | None:intergenic | 40.0% |
| TGTTTCCTCGAAAATGTCCT+AGG | + | chr1_3:28748322-28748341 | Msa0113060:intron | 40.0% | |
| ACCATGCATACCTAGGAATT+TGG | + | chr1_3:28748347-28748366 | Msa0113060:intron | 40.0% | |
| !! | CTTTGACTGGTCTAATTGGA+TGG | - | chr1_3:28748451-28748470 | None:intergenic | 40.0% |
| CAGCCTAGCACAATTAAAAG+TGG | + | chr1_3:28748481-28748500 | Msa0113060:CDS | 40.0% | |
| CTTTGGGTGTTTGTGGATCT+GGG | + | chr1_3:28746967-28746986 | Msa0113060:CDS | 45.0% | |
| TACACAAGAAGTGGAGCCAA+AGG | + | chr1_3:28747577-28747596 | Msa0113060:intron | 45.0% | |
| ACTACAGCATCAGCAACCTT+TGG | - | chr1_3:28747596-28747615 | None:intergenic | 45.0% | |
| !!! | CTGGTTCTGATGCTGCATTT+TGG | + | chr1_3:28747640-28747659 | Msa0113060:intron | 45.0% |
| !!! | TTGCTTTTTCCGCGAGTTGT+GGG | + | chr1_3:28747810-28747829 | Msa0113060:intron | 45.0% |
| CTGTAATGTGTCAGTGATGG+CGG | + | chr1_3:28748186-28748205 | Msa0113060:intron | 45.0% | |
| !!! | GGCTTGGTGTAGTTTTTTGC+AGG | + | chr1_3:28748207-28748226 | Msa0113060:intron | 45.0% |
| ! | TTTTCCTAGGTGAGAGTCCT+AGG | + | chr1_3:28748246-28748265 | Msa0113060:intron | 45.0% |
| ! | GGTTTCCTAGGACATTTTCG+AGG | - | chr1_3:28748330-28748349 | None:intergenic | 45.0% |
| CTAGGTATGCATGGTTTCCT+AGG | - | chr1_3:28748342-28748361 | None:intergenic | 45.0% | |
| CTAGGAAACCATGCATACCT+AGG | + | chr1_3:28748340-28748359 | Msa0113060:intron | 45.0% | |
| GCCAAATTCCTAGGTATGCA+TGG | - | chr1_3:28748351-28748370 | None:intergenic | 45.0% | |
| GGAAGAGAAGCCAAATTCCT+AGG | - | chr1_3:28748360-28748379 | None:intergenic | 45.0% | |
| ! | GGAATTTGGCTTCTCTTCCT+AGG | + | chr1_3:28748361-28748380 | Msa0113060:intron | 45.0% |
| ! | ATGGCGTGGATTTGGTTTAG+AGG | - | chr1_3:28748432-28748451 | None:intergenic | 45.0% |
| CTAATTGGATGGCGTGGATT+TGG | - | chr1_3:28748440-28748459 | None:intergenic | 45.0% | |
| CTTTGGGTGTTTGTGGATCT+GGG | + | chr1_3:28746967-28746986 | Msa0113060:CDS | 45.0% | |
| TACACAAGAAGTGGAGCCAA+AGG | + | chr1_3:28747577-28747596 | Msa0113060:intron | 45.0% | |
| ACTACAGCATCAGCAACCTT+TGG | - | chr1_3:28747596-28747615 | None:intergenic | 45.0% | |
| !!! | CTGGTTCTGATGCTGCATTT+TGG | + | chr1_3:28747640-28747659 | Msa0113060:intron | 45.0% |
| !!! | TTGCTTTTTCCGCGAGTTGT+GGG | + | chr1_3:28747810-28747829 | Msa0113060:intron | 45.0% |
| CTGTAATGTGTCAGTGATGG+CGG | + | chr1_3:28748186-28748205 | Msa0113060:intron | 45.0% | |
| !!! | GGCTTGGTGTAGTTTTTTGC+AGG | + | chr1_3:28748207-28748226 | Msa0113060:intron | 45.0% |
| ! | TTTTCCTAGGTGAGAGTCCT+AGG | + | chr1_3:28748246-28748265 | Msa0113060:intron | 45.0% |
| ! | GGTTTCCTAGGACATTTTCG+AGG | - | chr1_3:28748330-28748349 | None:intergenic | 45.0% |
| CTAGGTATGCATGGTTTCCT+AGG | - | chr1_3:28748342-28748361 | None:intergenic | 45.0% | |
| CTAGGAAACCATGCATACCT+AGG | + | chr1_3:28748340-28748359 | Msa0113060:intron | 45.0% | |
| GCCAAATTCCTAGGTATGCA+TGG | - | chr1_3:28748351-28748370 | None:intergenic | 45.0% | |
| GGAAGAGAAGCCAAATTCCT+AGG | - | chr1_3:28748360-28748379 | None:intergenic | 45.0% | |
| ! | GGAATTTGGCTTCTCTTCCT+AGG | + | chr1_3:28748361-28748380 | Msa0113060:intron | 45.0% |
| ! | ATGGCGTGGATTTGGTTTAG+AGG | - | chr1_3:28748432-28748451 | None:intergenic | 45.0% |
| CTAATTGGATGGCGTGGATT+TGG | - | chr1_3:28748440-28748459 | None:intergenic | 45.0% | |
| !!! | TATTTAATTAACATAATTTT+AGG | + | chr1_3:28747913-28747932 | Msa0113060:intron | 5.0% |
| !!! | ATTTAATTAACATAATTTTA+GGG | + | chr1_3:28747914-28747933 | Msa0113060:intron | 5.0% |
| !!! | TTTAAAATTTGAAAATTTTT+TGG | + | chr1_3:28748051-28748070 | Msa0113060:intron | 5.0% |
| !!! | TATTTAATTAACATAATTTT+AGG | + | chr1_3:28747913-28747932 | Msa0113060:intron | 5.0% |
| !!! | ATTTAATTAACATAATTTTA+GGG | + | chr1_3:28747914-28747933 | Msa0113060:intron | 5.0% |
| !!! | TTTAAAATTTGAAAATTTTT+TGG | + | chr1_3:28748051-28748070 | Msa0113060:intron | 5.0% |
| ! | GCTTTGGGTGTTTGTGGATC+TGG | + | chr1_3:28746966-28746985 | Msa0113060:CDS | 50.0% |
| ACTTGATGGAGGACACAGAG+AGG | - | chr1_3:28747094-28747113 | None:intergenic | 50.0% | |
| !! | CTGGCACTGATGCTGCATTT+AGG | + | chr1_3:28747707-28747726 | Msa0113060:intron | 50.0% |
| !!! | GTTGCTTTTTCCGCGAGTTG+TGG | + | chr1_3:28747809-28747828 | Msa0113060:intron | 50.0% |
| TAAGACACACCCACAACTCG+CGG | - | chr1_3:28747822-28747841 | None:intergenic | 50.0% | |
| GTTACCTAGGACTCTCACCT+AGG | - | chr1_3:28748253-28748272 | None:intergenic | 50.0% | |
| ! | TATTTCCTCGGTGGGTTCCT+AGG | + | chr1_3:28748274-28748293 | Msa0113060:intron | 50.0% |
| ! | ACTGGTCTAATTGGATGGCG+TGG | - | chr1_3:28748446-28748465 | None:intergenic | 50.0% |
| ! | GCTTTGGGTGTTTGTGGATC+TGG | + | chr1_3:28746966-28746985 | Msa0113060:CDS | 50.0% |
| ACTTGATGGAGGACACAGAG+AGG | - | chr1_3:28747094-28747113 | None:intergenic | 50.0% | |
| !! | CTGGCACTGATGCTGCATTT+AGG | + | chr1_3:28747707-28747726 | Msa0113060:intron | 50.0% |
| !!! | GTTGCTTTTTCCGCGAGTTG+TGG | + | chr1_3:28747809-28747828 | Msa0113060:intron | 50.0% |
| TAAGACACACCCACAACTCG+CGG | - | chr1_3:28747822-28747841 | None:intergenic | 50.0% | |
| GTTACCTAGGACTCTCACCT+AGG | - | chr1_3:28748253-28748272 | None:intergenic | 50.0% | |
| ! | TATTTCCTCGGTGGGTTCCT+AGG | + | chr1_3:28748274-28748293 | Msa0113060:intron | 50.0% |
| ! | ACTGGTCTAATTGGATGGCG+TGG | - | chr1_3:28748446-28748465 | None:intergenic | 50.0% |
| !! | ATGTGTCAGTGATGGCGGCT+TGG | + | chr1_3:28748191-28748210 | Msa0113060:intron | 55.0% |
| TTGTTCCTAGGAACCCACCG+AGG | - | chr1_3:28748282-28748301 | None:intergenic | 55.0% | |
| !! | ATGTGTCAGTGATGGCGGCT+TGG | + | chr1_3:28748191-28748210 | Msa0113060:intron | 55.0% |
| TTGTTCCTAGGAACCCACCG+AGG | - | chr1_3:28748282-28748301 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 28746915 | 28748508 | 28746915 | ID=Msa0113060;Name=Msa0113060 |
| chr1_3 | mRNA | 28746915 | 28748508 | 28746915 | ID=Msa0113060-mRNA-1;Parent=Msa0113060;Name=Msa0113060-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.66|0.5|1|3|0|78 |
| chr1_3 | exon | 28746915 | 28746988 | 28746915 | ID=Msa0113060-mRNA-1:exon:9491;Parent=Msa0113060-mRNA-1 |
| chr1_3 | exon | 28747057 | 28747129 | 28747057 | ID=Msa0113060-mRNA-1:exon:9492;Parent=Msa0113060-mRNA-1 |
| chr1_3 | exon | 28748419 | 28748508 | 28748419 | ID=Msa0113060-mRNA-1:exon:9493;Parent=Msa0113060-mRNA-1 |
| chr1_3 | CDS | 28746915 | 28746988 | 28746915 | ID=Msa0113060-mRNA-1:cds;Parent=Msa0113060-mRNA-1 |
| chr1_3 | CDS | 28747057 | 28747129 | 28747057 | ID=Msa0113060-mRNA-1:cds;Parent=Msa0113060-mRNA-1 |
| chr1_3 | CDS | 28748419 | 28748508 | 28748419 | ID=Msa0113060-mRNA-1:cds;Parent=Msa0113060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
