AlfalfaGEDB | Msa1190360

M. sativa cultivar zhongmu-4 / Msa1190360

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190360	XP_013445445.1	97.931	580	12	0	1	580	1	580	0.0	1184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190360	sp\|Q9LUC3\|MPK19_ARATH	71.134	582	131	8	3	555	2	575	0.0	795

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1037450	Msa1190360	0.803900	2.795410e-49	-8.615850e-47
Msa1190360	Msa1244120	0.876051	1.899010e-68	-8.615850e-47
Msa1190360	Msa1244230	0.840784	7.055971e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1190360	MtrunA17_Chr8g0359091	97.931	580	12	0	1	580	1	580	0.0	1184
Msa1190360	MtrunA17_Chr2g0314321	69.219	627	141	7	3	580	2	625	0.0	837
Msa1190360	MtrunA17_Chr3g0096631	64.668	617	172	8	3	580	2	611	0.0	774
Msa1190360	MtrunA17_Chr5g0443351	71.283	491	128	5	5	494	1	479	0.0	712
Msa1190360	MtrunA17_Chr2g0287271	66.731	517	148	6	6	508	5	511	0.0	707
Msa1190360	MtrunA17_Chr4g0065851	68.994	487	139	3	6	481	5	490	0.0	699
Msa1190360	MtrunA17_Chr8g0392811	70.000	450	133	2	9	457	100	548	0.0	684
Msa1190360	MtrunA17_Chr6g0482681	74.818	413	98	2	9	418	72	481	0.0	655
Msa1190360	MtrunA17_Chr4g0030231	52.280	329	150	3	32	360	46	367	2.14e-120	360
Msa1190360	MtrunA17_Chr8g0387401	50.296	338	159	4	29	365	55	384	7.63e-118	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1190360	AT3G14720.1	71.134	582	131	8	3	555	2	575	795
Msa1190360	AT1G53510.1	67.288	590	156	7	3	555	2	591	773
Msa1190360	AT2G42880.1	65.571	578	160	7	3	549	2	571	750
Msa1190360	AT3G14720.2	85.986	421	55	2	3	420	2	421	741
Msa1190360	AT3G14720.3	85.986	421	55	2	3	420	2	421	741
Msa1190360	AT2G42880.2	80.796	427	81	1	3	428	2	428	727
Msa1190360	AT5G19010.1	62.976	551	185	7	9	542	8	556	695
Msa1190360	AT1G73670.1	75.921	407	98	0	15	421	79	485	681
Msa1190360	AT3G18040.4	75.862	406	98	0	13	418	119	524	655
Msa1190360	AT3G18040.3	75.862	406	98	0	13	418	119	524	655

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Find 153 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGGAAATCAAATA+AGG	0.250395	8_1:+33238659	Msa1190360:CDS
AAACTCAAAGTTTGCGATTT+TGG	0.080119	8_1:+33235926	Msa1190360:CDS
AAATTCTCTGTCACCTTCTT+CGG	0.354732	8_1:+33234380	Msa1190360:five_prime_UTR
AAATTCTGGAAATCAAATAA+GGG	0.439887	8_1:+33238660	Msa1190360:CDS
AACAGCACTAGAGTGAACAG+TGG	0.722477	8_1:-33238551	None:intergenic
AACCCAGCAGTCCAACTTAC+AGG	0.346236	8_1:+33240042	Msa1190360:CDS
AACCTCACGAAGGATTCTAA+CGG	0.666001	8_1:-33235518	None:intergenic
AATAACCCATACCGTCGGCG+AGG	0.683175	8_1:+33240088	Msa1190360:CDS
AATGCAAGGAAGTACTTGAC+GGG	0.546658	8_1:+33237387	Msa1190360:CDS
AATTCTGGAAATCAAATAAG+GGG	0.628698	8_1:+33238661	Msa1190360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAGATATGAAATGAAA+TGG	-	chr8_1:33234421-33234440	None:intergenic	30.0%
AGTGAAAAACTCTAACTCTT+TGG	-	chr8_1:33235353-33235372	None:intergenic	30.0%
TCTTTAAACTCTCTCTTTGA+CGG	-	chr8_1:33235604-33235623	None:intergenic	30.0%
CAAACAATGAAAAGAAAGAC+GGG	-	chr8_1:33235765-33235784	None:intergenic	30.0%
CCAAACAATGAAAAGAAAGA+CGG	-	chr8_1:33235766-33235785	None:intergenic	30.0%
GCATTTGCCAATATATTCTT+GGG	-	chr8_1:33235899-33235918	None:intergenic	30.0%
TGCATTTGCCAATATATTCT+TGG	-	chr8_1:33235900-33235919	None:intergenic	30.0%
AATTCTTCCATGACATGATA+TGG	+	chr8_1:33236192-33236211	Msa1190360:intron	30.0%
ACAATATCCATATCATGTCA+TGG	-	chr8_1:33236202-33236221	None:intergenic	30.0%
GGAATAAAGCACATTATCAA+AGG	-	chr8_1:33236370-33236389	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	33234378	33240561	33234378	ID=Msa1190360;Name=Msa1190360
chr8_1	mRNA	33234378	33240561	33234378	ID=Msa1190360-mRNA-1;Parent=Msa1190360;Name=Msa1190360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=260\|1\|1\|1\|1\|1\|10\|303\|580
chr8_1	exon	33234378	33234664	33234378	ID=Msa1190360-mRNA-1:exon:11179;Parent=Msa1190360-mRNA-1
chr8_1	exon	33235346	33235754	33235346	ID=Msa1190360-mRNA-1:exon:11180;Parent=Msa1190360-mRNA-1
chr8_1	exon	33235870	33235997	33235870	ID=Msa1190360-mRNA-1:exon:11181;Parent=Msa1190360-mRNA-1
chr8_1	exon	33236101	33236160	33236101	ID=Msa1190360-mRNA-1:exon:11182;Parent=Msa1190360-mRNA-1
chr8_1	exon	33237096	33237245	33237096	ID=Msa1190360-mRNA-1:exon:11183;Parent=Msa1190360-mRNA-1
chr8_1	exon	33237375	33237530	33237375	ID=Msa1190360-mRNA-1:exon:11184;Parent=Msa1190360-mRNA-1
chr8_1	exon	33237963	33238174	33237963	ID=Msa1190360-mRNA-1:exon:11185;Parent=Msa1190360-mRNA-1
chr8_1	exon	33238301	33238402	33238301	ID=Msa1190360-mRNA-1:exon:11186;Parent=Msa1190360-mRNA-1
chr8_1	exon	33238549	33238709	33238549	ID=Msa1190360-mRNA-1:exon:11187;Parent=Msa1190360-mRNA-1
chr8_1	exon	33239921	33240561	33239921	ID=Msa1190360-mRNA-1:exon:11188;Parent=Msa1190360-mRNA-1
chr8_1	five_prime_UTR	33234378	33234637	33234378	ID=Msa1190360-mRNA-1:five_prime_utr;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33234638	33234664	33234638	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33235346	33235754	33235346	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33235870	33235997	33235870	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33236101	33236160	33236101	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33237096	33237245	33237096	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33237375	33237530	33237375	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33237963	33238174	33237963	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33238301	33238402	33238301	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33238549	33238709	33238549	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	CDS	33239921	33240258	33239921	ID=Msa1190360-mRNA-1:cds;Parent=Msa1190360-mRNA-1
chr8_1	three_prime_UTR	33240259	33240561	33240259	ID=Msa1190360-mRNA-1:three_prime_utr;Parent=Msa1190360-mRNA-1

Gene Sequence

>Msa1190360

ATGACGCAGAAAATTCAGCAGCTCAAGGACTCCAAAGAGTTAGAGTTTTTCACTGAGTATGGGGAAGCTAACAGATACAAGATTATTGAGATTATTGGAAAGGGTAGCTATGGAGTTGTTTGTGCAGCAATTGACACCCACACGGGCGAAAAGGTTGCAATTAAGAAGATTCAGGATGCCTTTGAACATATTTCTGATGCCGTTAGAATCCTTCGTGAGGTTAAGTTGCTGAGGCTTTTAAGACACCCTGATATTGTTGATATTAAGAGGATCATGTTGCCGCCGTCAAAGAGAGAGTTTAAAGATATTTATGTGGTCTTTGAGCTTATGGAGTCTGATCTCCATCAAGTCATTAAAGCCAATGATGACTTGACCCGTGAACACCATCAGTTTTTTCTTTATCAGATGCTACGTGCGTTGAAGTATATGCATTCGGCTAATGTGTACCACAGAGATCTTAAACCCAAGAATATATTGGCAAATGCAAACTGTAAACTCAAAGTTTGCGATTTTGGACTTGCAAGAGTTGCATTTAATGATGCCCCAACATCAATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCAGAGCTTTGTGGATCATTCGCTTCCAAGTACACACCAGCAATTGATTTATGGAGCATTGGATGCATTTTTGCTGAGGTGCTCTTGGGAAAGCCACTGTTTCCTGGTAAAAGTGTCGTGCATCAGTTAGATTTGATTACCGACCTTCTTGGGACACCATCGCTTGAAACTATTGCAGGAGTTAGAAATGATAATGCAAGGAAGTACTTGACGGGAATGCGGAAGAAACTTCCTGTGCCATTTGAACAGAAATTTCCAGATGCTGATCCATTGGCACTTCGCCTTTTGCAAAGGCTTCTAGCATTTGATCCAAAGAATCGGCCAACTGCAGAAGAGGCACTGGCTGATCCTTACTTCAAGGGTTTGGCAAAAGTTGAGAGAGAACCTTCGTGTAAGCCAATCTCAAAATTGGAATTTGAGTTTGAGAGGAGACGGTTAACAAAAGACGATGTTAGAGAACTAGTATATCGGGAAATACTAGAATATCATCCTCAACTGCTCAAAGATTACATGAATGGAACTGAAGGCGCCAATTTCCTCTATCCTAGTGCAATTGATCAATTGAGGAAGCAATTTGCTTATCTTGAGGAAAATGATGGAAAAAGTGGGCCAGTGCTTGCTCCTGAAAGAAAGCATGTCTCCCTTCCAAGGTCCACTGTTCACTCTAGTGCTGTTCTTCCAAGTAACCAGTCAACTTTTGCTTTGTGTGAGAACAAGAAAATGGTAGAAGATACATCTAAGAGTTTGAGAGCAGCCACAGAAAATTCTGGAAATCAAATAAGGGGTGTACAGCCTCCACCACGGGTGCCAGCTAAGCCAGGGAGAGTAGTAGGCCCAGTTCTACACTATGAAGATGCAAGAATCGCATACTCTTCTATTGACCCAAGGATGGTTTACCAAAATACTACTCAAGCAGTCTCGAGTCACTTTAGAACCCAGCAGTCCAACTTACAGGACACACCAACCTCTGATTTGAACAATAACCCATACCGTCGGCGAGGCAATAACAATAACCTAAATGATCATGTAACTATTGATACAAAACTGCTGCATGCACAGTCTCATATTGGTGTAGTCGGTGCTGCAGCAGTAGCTGTTGCCACTCACAGTCACAGGTATTCAAGGGGCATTCAGTACAGTTTGTCCTAG

Protein sequence

>Msa1190360

MTQKIQQLKDSKELEFFTEYGEANRYKIIEIIGKGSYGVVCAAIDTHTGEKVAIKKIQDAFEHISDAVRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHSANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTSIFWTDYVATRWYRAPELCGSFASKYTPAIDLWSIGCIFAEVLLGKPLFPGKSVVHQLDLITDLLGTPSLETIAGVRNDNARKYLTGMRKKLPVPFEQKFPDADPLALRLLQRLLAFDPKNRPTAEEALADPYFKGLAKVEREPSCKPISKLEFEFERRRLTKDDVRELVYREILEYHPQLLKDYMNGTEGANFLYPSAIDQLRKQFAYLEENDGKSGPVLAPERKHVSLPRSTVHSSAVLPSNQSTFALCENKKMVEDTSKSLRAATENSGNQIRGVQPPPRVPAKPGRVVGPVLHYEDARIAYSSIDPRMVYQNTTQAVSSHFRTQQSNLQDTPTSDLNNNPYRRRGNNNNLNDHVTIDTKLLHAQSHIGVVGAAAVAVATHSHRYSRGIQYSLS*