AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037450 MtrunA17_Chr7g0276361 88.730 630 37 6 1 630 1 596 0.0 1127
Msa1037450 MtrunA17_Chr8g0345901 42.178 652 287 16 9 621 30 630 1.93e-122 377
Msa1037450 MtrunA17_Chr3g0127941 37.500 656 332 21 8 617 49 672 7.82e-104 329
Msa1037450 MtrunA17_Chr4g0030271 54.795 146 63 2 8 153 82 224 3.51e-47 177
Msa1037450 MtrunA17_Chr4g0030271 37.342 158 73 6 486 618 608 764 6.15e-16 81.6
Msa1037450 MtrunA17_Chr1g0181811 57.576 132 53 2 8 139 78 206 5.46e-44 168
Msa1037450 MtrunA17_Chr1g0181811 42.991 107 48 4 524 617 630 736 6.76e-12 68.6
Msa1037450 MtrunA17_Chr4g0061021 37.654 162 98 2 9 170 27 185 4.51e-29 122
Msa1037450 MtrunA17_Chr4g0061021 64.000 50 18 0 571 620 501 550 1.04e-14 77.4
Msa1037450 MtrunA17_Chr3g0091641 39.024 164 92 3 3 161 7 167 1.25e-27 117
Msa1037450 MtrunA17_Chr3g0091641 60.000 50 20 0 571 620 494 543 2.47e-13 73.2
Msa1037450 MtrunA17_Chr2g0304841 35.878 131 78 2 12 142 19 143 7.29e-22 100
Msa1037450 MtrunA17_Chr1g0161431 39.844 128 71 2 12 139 12 133 1.45e-21 99.4
Msa1037450 MtrunA17_Chr4g0074411 34.884 129 78 2 12 140 19 141 1.97e-21 98.6
Msa1037450 MtrunA17_Chr2g0294911 35.583 163 95 4 12 172 30 184 3.74e-21 97.8
Msa1037450 MtrunA17_Chr4g0074401 32.500 160 100 3 12 169 18 171 6.49e-21 97.1
Msa1037450 MtrunA17_Chr3g0123131 36.434 129 76 2 12 140 14 136 7.18e-21 96.7
Msa1037450 MtrunA17_Chr4g0067981 37.984 129 74 2 12 140 32 154 1.41e-20 96.3
Msa1037450 MtrunA17_Chr8g0376881 35.659 129 77 2 12 140 26 148 3.25e-20 94.7
Msa1037450 MtrunA17_Chr3g0137101 33.125 160 92 4 12 162 9 162 1.76e-19 92.8
Msa1037450 MtrunA17_Chr1g0149841 34.091 132 81 2 12 143 6 131 4.03e-19 90.9
Msa1037450 MtrunA17_Chr3g0134481 35.878 131 78 2 12 142 9 133 2.66e-18 83.6
Msa1037450 MtrunA17_Chr1g0149851 34.351 131 80 2 12 142 6 130 9.41e-18 87.0
Msa1037450 MtrunA17_Chr7g0275401 31.783 129 82 2 15 143 9 131 5.66e-15 75.9
Msa1037450 MtrunA17_Chr7g0275891 33.571 140 82 5 6 143 2 132 9.76e-15 76.3
Msa1037450 MtrunA17_Chr4g0074421 32.407 108 65 3 62 167 3 104 2.39e-14 72.0
Msa1037450 MtrunA17_Chr7g0256551 29.577 142 79 3 17 140 11 149 2.01e-13 70.5
Msa1037450 MtrunA17_Chr5g0400241 32.800 125 76 2 12 136 15 131 2.13e-13 73.2
Msa1037450 MtrunA17_Chr4g0054981 35.156 128 69 3 12 136 15 131 4.77e-13 72.0
Msa1037450 MtrunA17_Chr3g0128691 32.031 128 71 3 17 132 20 143 1.83e-12 65.5
Msa1037450 MtrunA17_Chr3g0134461 33.094 139 84 4 3 140 2 132 8.91e-12 64.7
Msa1037450 MtrunA17_Chr5g0414931 27.513 189 110 6 17 192 18 192 1.63e-11 64.7
Msa1037450 MtrunA17_Chr4g0059571 30.534 131 83 3 15 138 26 155 1.99e-11 63.9
Msa1037450 MtrunA17_Chr1g0170741 31.538 130 74 3 15 132 8 134 5.66e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037450 AT5G24470.1 69.118 136 39 2 7 142 42 174 1.85e-59 209
Msa1037450 AT5G24470.1 86.957 46 6 0 574 619 508 553 5.17e-19 91.3
Msa1037450 AT2G46790.3 69.173 133 38 2 7 139 29 158 1.76e-58 203
Msa1037450 AT2G46790.1 69.173 133 38 2 7 139 29 158 2.75e-58 203
Msa1037450 AT2G46790.1 84.783 46 7 0 573 618 415 460 5.71e-18 87.4
Msa1037450 AT5G60100.7 62.121 132 47 2 8 139 57 185 1.25e-49 178
Msa1037450 AT5G60100.6 62.121 132 47 2 8 139 57 185 1.25e-49 178
Msa1037450 AT5G60100.4 62.121 132 47 2 8 139 57 185 1.25e-49 178
Msa1037450 AT5G60100.5 33.967 368 196 9 8 362 57 390 4.43e-49 179
Msa1037450 AT5G60100.5 46.154 104 52 1 514 617 385 484 2.63e-16 82.4
Msa1037450 AT5G60100.3 33.967 368 196 9 8 362 57 390 4.43e-49 179
Msa1037450 AT5G60100.3 46.154 104 52 1 514 617 385 484 2.63e-16 82.4
Msa1037450 AT5G60100.1 33.967 368 196 9 8 362 57 390 4.43e-49 179
Msa1037450 AT5G60100.1 46.154 104 52 1 514 617 385 484 2.63e-16 82.4
Msa1037450 AT5G60100.2 62.121 132 47 2 8 139 57 185 2.80e-48 177
Msa1037450 AT5G60100.2 46.154 104 52 1 514 617 412 511 2.18e-16 82.8
Msa1037450 AT5G02810.1 54.545 132 57 2 8 139 71 199 1.76e-41 160
Msa1037450 AT5G02810.1 72.917 48 13 0 570 617 664 711 1.58e-15 80.9
Msa1037450 AT5G61380.1 37.255 153 93 2 9 161 13 162 5.95e-28 119
Msa1037450 AT5G61380.1 64.000 50 18 0 571 620 529 578 1.23e-13 74.7
Msa1037450 AT3G16857.2 38.931 131 74 2 12 142 34 158 4.08e-22 101
Msa1037450 AT3G16857.1 38.931 131 74 2 12 142 34 158 4.16e-22 101
Msa1037450 AT2G25180.1 38.760 129 73 2 12 140 14 136 1.17e-21 99.8
Msa1037450 AT2G46670.1 84.783 46 7 0 573 618 130 175 1.65e-19 87.0
Msa1037450 AT4G31920.1 37.008 127 74 2 12 138 14 134 2.59e-19 92.4
Msa1037450 AT2G46790.5 84.783 46 7 0 573 618 258 303 1.46e-18 87.4
Msa1037450 AT2G46790.4 84.783 46 7 0 573 618 258 303 1.46e-18 87.4
Msa1037450 AT2G46790.2 84.783 46 7 0 573 618 298 343 3.37e-18 87.0
Msa1037450 AT2G46790.2 75.610 41 10 0 99 139 1 41 2.84e-16 81.3
Msa1037450 AT1G67710.1 34.109 129 79 2 12 140 8 130 3.88e-18 88.6
Msa1037450 AT2G01760.1 31.579 171 110 3 12 182 8 171 4.53e-18 87.0
Msa1037450 AT5G02810.2 72.917 48 13 0 571 618 521 568 1.13e-15 80.9
Msa1037450 AT5G02810.2 65.217 46 16 0 94 139 10 55 2.22e-14 77.0
Msa1037450 AT3G16857.3 40.860 93 49 2 50 142 2 88 3.28e-15 79.7
Msa1037450 AT5G58080.1 34.783 138 79 4 3 139 8 135 1.59e-14 77.4
Msa1037450 AT5G49240.1 32.847 137 86 2 12 148 39 169 1.59e-13 72.0
Msa1037450 AT2G01760.2 28.141 199 108 5 12 182 8 199 3.09e-13 72.4
Msa1037450 AT1G10470.1 32.558 129 75 3 17 136 36 161 4.51e-13 70.1
Msa1037450 AT1G10470.3 33.600 125 69 4 23 136 26 147 4.64e-13 69.7
Msa1037450 AT1G59940.1 33.071 127 71 4 23 138 39 162 1.35e-12 68.2
Msa1037450 AT3G62670.1 29.070 172 103 5 16 178 42 203 2.47e-12 69.7
Msa1037450 AT1G59940.2 32.061 131 77 3 17 138 127 254 5.31e-12 67.8
Msa1037450 AT5G62920.1 31.618 136 83 4 6 132 14 148 1.34e-11 64.3
Msa1037450 AT5G07210.2 29.586 169 102 5 15 178 16 172 1.55e-11 67.8
Msa1037450 AT1G74890.1 30.075 133 81 3 15 138 18 147 3.54e-11 63.5
Msa1037450 AT1G49190.2 29.032 124 82 2 17 140 36 153 4.03e-11 66.6
Msa1037450 AT2G01760.3 42.029 69 37 1 72 140 1 66 4.64e-11 65.1
Msa1037450 AT1G49190.1 29.032 124 82 2 17 140 36 153 4.64e-11 65.9
Msa1037450 AT1G19050.1 27.632 152 98 3 15 157 24 172 4.80e-11 63.2
Msa1037450 AT3G48100.1 32.061 131 76 4 12 132 22 149 4.86e-11 62.8
Msa1037450 AT3G56380.2 26.471 136 88 2 15 140 20 153 4.97e-11 62.0

Find 142 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGTCTCCTACAAATTT+AGG 0.180693 7_1:-74078564 Msa1037450:three_prime_UTR
TCTTATAAATCTTATTTGTT+AGG 0.228803 7_1:-74078494 Msa1037450:three_prime_UTR
GAACTCTTTGTTGGAAATAA+AGG 0.268310 7_1:+74079726 None:intergenic
CTTTCTTCAGTGGTAGGTTT+AGG 0.274091 7_1:+74080611 None:intergenic
AGCAGTTCGTGATGGGTTAA+AGG 0.296495 7_1:-74082083 Msa1037450:CDS
CAATTTGCATGATTGCTCTT+TGG 0.310062 7_1:+74080719 None:intergenic
TCTTCAAATGCATGCTCAAT+GGG 0.318207 7_1:-74081809 Msa1037450:CDS
AATTACAATCCTAAATTTGT+AGG 0.331646 7_1:+74078555 None:intergenic
CGCCAAGTACAGGGTGAACT+TGG 0.337409 7_1:-74078772 Msa1037450:CDS
GGAACTTGTGGCAGCATGTC+TGG 0.341325 7_1:-74081743 Msa1037450:CDS
GCAGGAAAATATCACATATC+TGG 0.343384 7_1:-74079637 Msa1037450:CDS
GCTGGAAGTATTGCATTTGC+AGG 0.349473 7_1:-74078413 Msa1037450:three_prime_UTR
TGCTGGAGCTATTGACTTGA+TGG 0.350704 7_1:-74080759 Msa1037450:CDS
TTGTTCCTCCCACGATGCTT+AGG 0.351488 7_1:-74082328 Msa1037450:CDS
TTGTTAGAGCTGCTTCTCTT+TGG 0.353419 7_1:+74079115 None:intergenic
TGTGATGGTCCATCATGATT+TGG 0.359441 7_1:+74081963 None:intergenic
AGACAGATGCTATGACAAAA+AGG 0.359785 7_1:-74079073 Msa1037450:intron
GATTCATGAGAACTCTTTGT+TGG 0.378222 7_1:+74079717 None:intergenic
GTACAACTTTGACCATTAGA+TGG 0.381258 7_1:+74079309 None:intergenic
CACTATTCATAGAACTTTCA+AGG 0.383146 7_1:+74079181 None:intergenic
GCTGAGTATAACCACGAAAC+TGG 0.385036 7_1:-74081063 Msa1037450:CDS
CTTATAAATCTTATTTGTTA+GGG 0.386469 7_1:-74078493 Msa1037450:three_prime_UTR
TAATTATTATATGTAGTGAT+TGG 0.389402 7_1:-74078537 Msa1037450:three_prime_UTR
TGAATCTTTGTATTATTATG+AGG 0.390909 7_1:+74080812 None:intergenic
CACTTCCGATAATAAGTCTA+TGG 0.395541 7_1:-74079550 Msa1037450:CDS
TCAAACTTGAAGAACTCTTC+AGG 0.397337 7_1:+74081139 None:intergenic
ATGTTCCATAGACTTATTAT+CGG 0.405466 7_1:+74079545 None:intergenic
CTCCCACTCCCATCAATCTC+TGG 0.409076 7_1:-74082001 Msa1037450:CDS
ATTTCAACAGGTTTAATGCT+TGG 0.410650 7_1:-74080905 Msa1037450:CDS
CTAAGCTCATTCCTGCGAAC+TGG 0.412499 7_1:+74081765 None:intergenic
TCGGAAGTGGCCCCGGTGGC+TGG 0.413092 7_1:+74079564 None:intergenic
GCAGTTTGTTCGCCAAGTAC+AGG 0.417594 7_1:-74078782 Msa1037450:CDS
TAGAGCTGCTTCTCTTTGGC+TGG 0.417856 7_1:+74079119 None:intergenic
GTCTTCAAATGCATGCTCAA+TGG 0.427096 7_1:-74081810 Msa1037450:CDS
TCCAGCTAAAAGCAGGATCT+TGG 0.431308 7_1:+74078430 None:intergenic
CTTTGTATTATTATGAGGAC+TGG 0.431448 7_1:+74080817 None:intergenic
GGGTGTGACAAAATTTCAAC+AGG 0.435384 7_1:-74080917 Msa1037450:CDS
CCCCAAGTTCACCCTGTACT+TGG 0.437798 7_1:+74078770 None:intergenic
GAGGAAATACTTGCGGGAAA+TGG 0.439122 7_1:+74079435 None:intergenic
ATGCATGACTCTCCATCTAA+TGG 0.442942 7_1:-74079321 Msa1037450:CDS
TGTTCCTCCCACGATGCTTA+GGG 0.443009 7_1:-74082327 Msa1037450:CDS
AGTGGTGTGGGTGAAGGCCT+AGG 0.446712 7_1:-74079252 Msa1037450:CDS
CTTGAATTCTTTCCAGCCAC+CGG 0.447171 7_1:-74079576 Msa1037450:CDS
TTGCAGTTATGGCAGCAGTA+TGG 0.448329 7_1:-74079757 Msa1037450:intron
AATATCACATATCTGGTGAT+TGG 0.451094 7_1:-74079630 Msa1037450:CDS
GTGATGGTCCATCATGATTT+GGG 0.451826 7_1:+74081964 None:intergenic
CACAGAAGCACTAGAATGAT+TGG 0.453271 7_1:+74081542 None:intergenic
ATTTGTCTTTCTTCAGTGGT+AGG 0.456011 7_1:+74080605 None:intergenic
GAATGGGAGGAAATACTTGC+GGG 0.457257 7_1:+74079429 None:intergenic
ATTGCTTTGATCGCAAGTAT+AGG 0.461942 7_1:+74079356 None:intergenic
GAAAACCGTGATGAAGTGTT+AGG 0.466999 7_1:-74080857 Msa1037450:CDS
TTGCTTCACCTGGTCAGTAT+TGG 0.470685 7_1:+74081116 None:intergenic
ATAATAGCATCAAAAGCTGC+AGG 0.472025 7_1:-74080938 Msa1037450:CDS
CCAAGAAAACGCAGAAGCAT+TGG 0.477432 7_1:+74080571 None:intergenic
AGTTGAAAACCAGAGATTGA+TGG 0.478148 7_1:+74081992 None:intergenic
TCGATGTTCAACGCACAATC+AGG 0.479414 7_1:-74079507 Msa1037450:CDS
GAACAAACTGCCCTTTCACC+CGG 0.480092 7_1:+74078794 None:intergenic
GTTATATACCTCCAGTTTCG+TGG 0.481995 7_1:+74081052 None:intergenic
CATAGACTTATTATCGGAAG+TGG 0.483143 7_1:+74079551 None:intergenic
TTATTGATTTACAGTCTGAC+TGG 0.486215 7_1:-74078698 Msa1037450:three_prime_UTR
AATGCCCCTTCAGCTATTGT+AGG 0.487039 7_1:-74079213 Msa1037450:CDS
TTGAATTCTTTCCAGCCACC+GGG 0.489831 7_1:-74079575 Msa1037450:CDS
AATCTTATTTGTTAGGGCTG+TGG 0.490204 7_1:-74078487 Msa1037450:three_prime_UTR
TATCTGGTGATTGGTCAGTC+TGG 0.490312 7_1:-74079621 Msa1037450:CDS
AATACTACTCATCAGTATGA+TGG 0.494147 7_1:-74079672 Msa1037450:CDS
TAGAATTAACTTGCTTCACC+TGG 0.498379 7_1:+74081106 None:intergenic
GATCTAGAAGACCATTCTGC+TGG 0.510166 7_1:-74080776 Msa1037450:CDS
AACAAACTGCCCTTTCACCC+GGG 0.514303 7_1:+74078795 None:intergenic
AATCAGGCATGCATCCTAGT+TGG 0.515363 7_1:-74079491 Msa1037450:CDS
CAGTTCGCAGGAATGAGCTT+AGG 0.516350 7_1:-74081764 Msa1037450:CDS
TAACAAATAAGATTTATAAG+AGG 0.516723 7_1:+74078496 None:intergenic
ATGTGGCGAGTAGAATCATC+AGG 0.517745 7_1:+74082290 None:intergenic
TACAGGTCCGATATGAAAGC+CGG 0.519302 7_1:-74078840 Msa1037450:intron
TAGGCCTTCACCCACACCAC+TGG 0.520612 7_1:+74079254 None:intergenic
TTCCATCACTTACGCTGCCT+AGG 0.525766 7_1:+74079235 None:intergenic
TTAATTCTATCAAATATGAA+AGG 0.528745 7_1:-74081092 Msa1037450:CDS
AAAATAATCTCAGTAGCCTC+TGG 0.528901 7_1:+74078738 None:intergenic
GAGTCATAACGCCAGTGGTG+TGG 0.529153 7_1:-74079265 Msa1037450:CDS
ATATGAAAGCCGGAAAAGAC+AGG 0.529638 7_1:-74078830 Msa1037450:CDS
TTCTTGCCTACAATAGCTGA+AGG 0.531323 7_1:+74079207 None:intergenic
GCCAAGTACAGGGTGAACTT+GGG 0.533640 7_1:-74078771 Msa1037450:CDS
TTCTCATTAAACCAGTTCGC+AGG 0.537821 7_1:-74081776 Msa1037450:CDS
AACGCCAGTGGTGTGGGTGA+AGG 0.538842 7_1:-74079258 Msa1037450:CDS
CAATCATTCTAGTGCTTCTG+TGG 0.540350 7_1:-74081541 Msa1037450:CDS
CAATACTTCCAGCTAAAAGC+AGG 0.540585 7_1:+74078423 None:intergenic
TTCGTGATGGGTTAAAGGCA+TGG 0.540917 7_1:-74082078 Msa1037450:CDS
GCAGTTGCAGCAGTTCGTGA+TGG 0.541035 7_1:-74082091 Msa1037450:intron
GCAAATTGTAGTTTCAGTGA+TGG 0.541612 7_1:-74080704 Msa1037450:CDS
GTTGAAAACCAGAGATTGAT+GGG 0.542148 7_1:+74081993 None:intergenic
AGACTGTAAATCAATAATGA+AGG 0.542183 7_1:+74078704 None:intergenic
TTGTGTATCAAAATCAAACT+TGG 0.544194 7_1:+74080673 None:intergenic
CTTCGCAACTGCGGCTACAA+AGG 0.544954 7_1:-74082254 Msa1037450:intron
CAGTTGCAGCAGTTCGTGAT+GGG 0.544994 7_1:-74082090 Msa1037450:CDS
AACCAGAGATTGATGGGAGT+GGG 0.548005 7_1:+74081999 None:intergenic
CAGTTTGTTCGCCAAGTACA+GGG 0.548311 7_1:-74078781 Msa1037450:CDS
AGTCATAACGCCAGTGGTGT+GGG 0.549753 7_1:-74079264 Msa1037450:CDS
TCTTTACAAAGAGATTCTCC+TGG 0.549770 7_1:-74080641 Msa1037450:CDS
AAACCAGAGATTGATGGGAG+TGG 0.557513 7_1:+74081998 None:intergenic
CAATATTTGTCTTTCTTCAG+TGG 0.559075 7_1:+74080601 None:intergenic
CTTATTATCGGAAGTGGCCC+CGG 0.559482 7_1:+74079557 None:intergenic
TGTATCAAAATCAAACTTGG+CGG 0.561864 7_1:+74080676 None:intergenic
TTCTCAAGATTCAGTTAGCA+CGG 0.563846 7_1:-74081832 Msa1037450:CDS
CTCAGAACCTCATCACTGGT+TGG 0.564050 7_1:-74079388 Msa1037450:CDS
TAATTCTATCAAATATGAAA+GGG 0.564328 7_1:-74081091 Msa1037450:CDS
TGAATAGTGATCACCATGAC+GGG 0.566391 7_1:-74079167 Msa1037450:CDS
TCGTGATGGGTTAAAGGCAT+GGG 0.566890 7_1:-74082077 Msa1037450:CDS
AGTCAATAGCTCCAGCAGAA+TGG 0.578827 7_1:+74080765 None:intergenic
CTTGCCTACAATAGCTGAAG+GGG 0.579471 7_1:+74079209 None:intergenic
ACTACTTACCCAAATCATGA+TGG 0.580209 7_1:-74081972 Msa1037450:CDS
ACAAACTGCCCTTTCACCCG+GGG 0.585922 7_1:+74078796 None:intergenic
ACTCAACAATGGTTAACTGT+AGG 0.586187 7_1:-74078663 Msa1037450:three_prime_UTR
AGAACTCAGAACCTCATCAC+TGG 0.587454 7_1:-74079392 Msa1037450:CDS
TCTTGCCTACAATAGCTGAA+GGG 0.592508 7_1:+74079208 None:intergenic
TTGTGTCTCTAAGCCCGTCA+TGG 0.597875 7_1:+74079154 None:intergenic
CCAAGTACAGGGTGAACTTG+GGG 0.598254 7_1:-74078770 Msa1037450:CDS
AACTTGAAGAACTCTTCAGG+TGG 0.599681 7_1:+74081142 None:intergenic
TACAATAACATACTTATGAG+AGG 0.600728 7_1:+74081926 None:intergenic
ATGAATAGTGATCACCATGA+CGG 0.601535 7_1:-74079168 Msa1037450:CDS
ACACTAATTTGACTCAACAA+TGG 0.608624 7_1:-74078674 Msa1037450:three_prime_UTR
GTAGGTTTAGGTGAGATGCC+AGG 0.609368 7_1:+74080623 None:intergenic
GCTTTGATCGCAAGTATAGG+TGG 0.619142 7_1:+74079359 None:intergenic
CTGTTCCTAACACTTCATCA+CGG 0.623164 7_1:+74080852 None:intergenic
AGTAAGACCCTAAGCATCGT+GGG 0.624384 7_1:+74082320 None:intergenic
TCTGCACTTCTTCGCAACTG+CGG 0.624661 7_1:-74082263 Msa1037450:CDS
AAGTTTGACCAATACTGACC+AGG 0.628089 7_1:-74081124 Msa1037450:CDS
GGAATGAGCTTAGGAACTTG+TGG 0.628795 7_1:-74081755 Msa1037450:CDS
TATCAAATATGAAAGGGAGT+CGG 0.629440 7_1:-74081085 Msa1037450:CDS
GCATCATCCAACCAGTGATG+AGG 0.630119 7_1:+74079381 None:intergenic
GCATTCAATATATTTGTGCG+TGG 0.632838 7_1:+74081515 None:intergenic
GGAATGGGAGGAAATACTTG+CGG 0.634886 7_1:+74079428 None:intergenic
GAAGAAGTGCAGAAATAATG+TGG 0.645080 7_1:+74082273 None:intergenic
TAATAGCATCAAAAGCTGCA+GGG 0.646953 7_1:-74080937 Msa1037450:CDS
ACTTGAAGAACTCTTCAGGT+GGG 0.661573 7_1:+74081143 None:intergenic
CTTCAAATGCATGCTCAATG+GGG 0.668890 7_1:-74081808 Msa1037450:CDS
GAGTATAACCACGAAACTGG+AGG 0.676593 7_1:-74081060 Msa1037450:intron
GAGTAAGACCCTAAGCATCG+TGG 0.680732 7_1:+74082319 None:intergenic
GCGGAGAGTCATAACGCCAG+TGG 0.687526 7_1:-74079270 Msa1037450:CDS
TGAATTCTTTCCAGCCACCG+GGG 0.688194 7_1:-74079574 Msa1037450:CDS
CAAACTGCCCTTTCACCCGG+GGG 0.705042 7_1:+74078797 None:intergenic
AAGACCCTAAGCATCGTGGG+AGG 0.718715 7_1:+74082323 None:intergenic
CTTGGGGTAGCTGAAACCAG+AGG 0.735170 7_1:-74078754 Msa1037450:CDS
GCTTATGTCTAATAACGACG+AGG 0.765345 7_1:-74078453 Msa1037450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAGAAAAAAAAAGAAT+GGG - chr7_1:74080603-74080622 Msa1037450:CDS 10.0%
!! TTAATTCTATCAAATATGAA+AGG - chr7_1:74079674-74079693 Msa1037450:CDS 15.0%
!! TAATTCTATCAAATATGAAA+GGG - chr7_1:74079675-74079694 Msa1037450:CDS 15.0%
!!! GATTTATATTTTATTGTCTT+TGG - chr7_1:74080485-74080504 Msa1037450:intron 15.0%
!!! CTTTTTAGAAAAAAAAAGAA+TGG - chr7_1:74080602-74080621 Msa1037450:CDS 15.0%
!!! TTTTAGAAAAAAAAAGAATG+GGG - chr7_1:74080604-74080623 Msa1037450:CDS 15.0%
!!! ATTTTATTATTAACATCTCT+TGG + chr7_1:74080818-74080837 None:intergenic 15.0%
!! ATAAATACATATTATCTACT+AGG + chr7_1:74080848-74080867 None:intergenic 15.0%
!!! ATAAAAAAATATTTCTAGAG+TGG + chr7_1:74081757-74081776 None:intergenic 15.0%
!! TAATTATTATATGTAGTGAT+TGG - chr7_1:74082229-74082248 Msa1037450:intron 15.0%
!! TAACAAATAAGATTTATAAG+AGG + chr7_1:74082273-74082292 None:intergenic 15.0%
!!! TCTTATAAATCTTATTTGTT+AGG - chr7_1:74082272-74082291 Msa1037450:CDS 15.0%
!!! CTTATAAATCTTATTTGTTA+GGG - chr7_1:74082273-74082292 Msa1037450:CDS 15.0%
!!! TAAATAAATACAAGTTGGAT+TGG + chr7_1:74079127-74079146 None:intergenic 20.0%
!! TGGTATAAATAAATACAAGT+TGG + chr7_1:74079132-74079151 None:intergenic 20.0%
!! ACATATCTAACAAATAACAA+TGG + chr7_1:74079351-74079370 None:intergenic 20.0%
!! AGAACATTAATAATGAAATC+CGG + chr7_1:74079420-74079439 None:intergenic 20.0%
!! GTCAATAACTAACAAAATAA+GGG + chr7_1:74079775-74079794 None:intergenic 20.0%
!! TGTCAATAACTAACAAAATA+AGG + chr7_1:74079776-74079795 None:intergenic 20.0%
!! TGAATCTTTGTATTATTATG+AGG + chr7_1:74079957-74079976 None:intergenic 20.0%
!!! TTTGAGTTGATTTATCAATA+TGG - chr7_1:74081789-74081808 Msa1037450:CDS 20.0%
!!! ATTGCTCAAATTTATTTTAC+AGG - chr7_1:74081909-74081928 Msa1037450:intron 20.0%
!! AATTACAATCCTAAATTTGT+AGG + chr7_1:74082214-74082233 None:intergenic 20.0%
! AACATTACTATTCTTTAACG+TGG + chr7_1:74078628-74078647 None:intergenic 25.0%
! TACAATAACATACTTATGAG+AGG + chr7_1:74078843-74078862 None:intergenic 25.0%
!!! AATGTTGTTATATTTTGAGG+AGG + chr7_1:74079157-74079176 None:intergenic 25.0%
!! GGAAATGTTGTTATATTTTG+AGG + chr7_1:74079160-74079179 None:intergenic 25.0%
! TTACACTTTCAATCAATGTT+TGG - chr7_1:74079442-74079461 Msa1037450:CDS 25.0%
! GCAGTTTGTATGTTAAAAAA+AGG + chr7_1:74079517-74079536 None:intergenic 25.0%
! TAAATACATGGAAAATATGC+AGG - chr7_1:74079594-74079613 Msa1037450:CDS 25.0%
! TTGTGTATCAAAATCAAACT+TGG + chr7_1:74080096-74080115 None:intergenic 25.0%
! ACCAAAATAACAGTTATCTT+TGG - chr7_1:74080330-74080349 Msa1037450:intron 25.0%
!!! ACCAAAGATAACTGTTATTT+TGG + chr7_1:74080334-74080353 None:intergenic 25.0%
! TTCATATGATATCACGAATT+AGG + chr7_1:74080443-74080462 None:intergenic 25.0%
! TTTGTATATCTGTCTCTAAT+CGG - chr7_1:74080868-74080887 Msa1037450:CDS 25.0%
! TCAGTATCAATAATTGTGTA+CGG - chr7_1:74080928-74080947 Msa1037450:CDS 25.0%
! ATGTTCCATAGACTTATTAT+CGG + chr7_1:74081224-74081243 None:intergenic 25.0%
!!! ATCAGTGTTTTTAGTAAGTT+TGG - chr7_1:74081813-74081832 Msa1037450:CDS 25.0%
! AGACTGTAAATCAATAATGA+AGG + chr7_1:74082065-74082084 None:intergenic 25.0%
!! GAATGTTTTTGCAATTGTGA+TGG + chr7_1:74078821-74078840 None:intergenic 30.0%
ATGAGGAATTGAGGATATAT+AGG + chr7_1:74078889-74078908 None:intergenic 30.0%
! AAATACAAGTTGGATTGGAT+TGG + chr7_1:74079122-74079141 None:intergenic 30.0%
ACATCATCAAGTTTATTCTG+TGG + chr7_1:74079181-74079200 None:intergenic 30.0%
ATGCACTCAAAAAATTAGTG+AGG - chr7_1:74079270-74079289 Msa1037450:CDS 30.0%
GTGTTTGAGTGAAATTTAGA+TGG + chr7_1:74079321-74079340 None:intergenic 30.0%
ATTAATAATGAAATCCGGTC+AGG + chr7_1:74079415-74079434 None:intergenic 30.0%
TTACTATCAGCTTCAGAAAA+TGG + chr7_1:74079577-74079596 None:intergenic 30.0%
TGAAGCTGATAGTAAATACA+TGG - chr7_1:74079582-74079601 Msa1037450:CDS 30.0%
TATCAAATATGAAAGGGAGT+CGG - chr7_1:74079681-74079700 Msa1037450:CDS 30.0%
ATTTCAACAGGTTTAATGCT+TGG - chr7_1:74079861-74079880 Msa1037450:intron 30.0%
CTTTGTATTATTATGAGGAC+TGG + chr7_1:74079952-74079971 None:intergenic 30.0%
TGTATCAAAATCAAACTTGG+CGG + chr7_1:74080093-74080112 None:intergenic 30.0%
CAATATTTGTCTTTCTTCAG+TGG + chr7_1:74080168-74080187 None:intergenic 30.0%
ATATGATATCACGAATTAGG+TGG + chr7_1:74080440-74080459 None:intergenic 30.0%
TTGAGAGACAGAAGATATAT+TGG - chr7_1:74080542-74080561 Msa1037450:intron 30.0%
AGAAAAAAAAAGAATGGGGA+AGG - chr7_1:74080608-74080627 Msa1037450:CDS 30.0%
GAAAAAAAAAGAATGGGGAA+GGG - chr7_1:74080609-74080628 Msa1037450:CDS 30.0%
AAAAAAAAAGAATGGGGAAG+GGG - chr7_1:74080610-74080629 Msa1037450:CDS 30.0%
TTGTATATCTGTCTCTAATC+GGG - chr7_1:74080869-74080888 Msa1037450:CDS 30.0%
AAAATTCCCATTTGCAGTTA+TGG - chr7_1:74080998-74081017 Msa1037450:intron 30.0%
GAACTCTTTGTTGGAAATAA+AGG + chr7_1:74081043-74081062 None:intergenic 30.0%
AATACTACTCATCAGTATGA+TGG - chr7_1:74081094-74081113 Msa1037450:CDS 30.0%
TGATGGAAAAAAACAAAAGC+AGG - chr7_1:74081111-74081130 Msa1037450:CDS 30.0%
AATATCACATATCTGGTGAT+TGG - chr7_1:74081136-74081155 Msa1037450:CDS 30.0%
!!! TCTTTTTGGAACACTGATTT+TGG + chr7_1:74081304-74081323 None:intergenic 30.0%
CACTATTCATAGAACTTTCA+AGG + chr7_1:74081588-74081607 None:intergenic 30.0%
TAGTAATCTCAAACATGTCT+AGG - chr7_1:74081856-74081875 Msa1037450:intron 30.0%
!! TTATTGATTTACAGTCTGAC+TGG - chr7_1:74082068-74082087 Msa1037450:CDS 30.0%
ACACTAATTTGACTCAACAA+TGG - chr7_1:74082092-74082111 Msa1037450:intron 30.0%
! GAAGAAGTGCAGAAATAATG+TGG + chr7_1:74078496-74078515 None:intergenic 35.0%
GTTGAAAACCAGAGATTGAT+GGG + chr7_1:74078776-74078795 None:intergenic 35.0%
AGTTGAAAACCAGAGATTGA+TGG + chr7_1:74078777-74078796 None:intergenic 35.0%
ACTACTTACCCAAATCATGA+TGG - chr7_1:74078794-74078813 Msa1037450:CDS 35.0%
TTCTCAAGATTCAGTTAGCA+CGG - chr7_1:74078934-74078953 Msa1037450:intron 35.0%
TCTTCAAATGCATGCTCAAT+GGG - chr7_1:74078957-74078976 Msa1037450:intron 35.0%
!! TGTTATATTTTGAGGAGGCA+TGG + chr7_1:74079152-74079171 None:intergenic 35.0%
GCATTCAATATATTTGTGCG+TGG + chr7_1:74079254-74079273 None:intergenic 35.0%
! ACAGTTAACTTTTACCTGAC+CGG - chr7_1:74079398-74079417 Msa1037450:CDS 35.0%
! AAATGGTGATGTAGAAGTGA+AGG + chr7_1:74079560-74079579 None:intergenic 35.0%
TCAAACTTGAAGAACTCTTC+AGG + chr7_1:74079630-74079649 None:intergenic 35.0%
!! TAGAATTAACTTGCTTCACC+TGG + chr7_1:74079663-74079682 None:intergenic 35.0%
ATAATAGCATCAAAAGCTGC+AGG - chr7_1:74079828-74079847 Msa1037450:intron 35.0%
TAATAGCATCAAAAGCTGCA+GGG - chr7_1:74079829-74079848 Msa1037450:intron 35.0%
CAATTTGCATGATTGCTCTT+TGG + chr7_1:74080050-74080069 None:intergenic 35.0%
GCAAATTGTAGTTTCAGTGA+TGG - chr7_1:74080062-74080081 Msa1037450:intron 35.0%
TCTTTACAAAGAGATTCTCC+TGG - chr7_1:74080125-74080144 Msa1037450:intron 35.0%
ATTTGTCTTTCTTCAGTGGT+AGG + chr7_1:74080164-74080183 None:intergenic 35.0%
TGTAACAGCATAAACAAGAC+CGG + chr7_1:74080395-74080414 None:intergenic 35.0%
CTAAAACAACACAGAGAACA+TGG - chr7_1:74080463-74080482 Msa1037450:intron 35.0%
! TGACAAATTTTACCACCAGT+TGG + chr7_1:74080516-74080535 None:intergenic 35.0%
AGCATTCACATACTTCCAAA+AGG + chr7_1:74080746-74080765 None:intergenic 35.0%
GATTCATGAGAACTCTTTGT+TGG + chr7_1:74081052-74081071 None:intergenic 35.0%
GCAGGAAAATATCACATATC+TGG - chr7_1:74081129-74081148 Msa1037450:CDS 35.0%
CATAGACTTATTATCGGAAG+TGG + chr7_1:74081218-74081237 None:intergenic 35.0%
CACTTCCGATAATAAGTCTA+TGG - chr7_1:74081216-74081235 Msa1037450:intron 35.0%
! GAAATGGAGAACTCTCTTTT+TGG + chr7_1:74081318-74081337 None:intergenic 35.0%
!!! CTGACTTTTAGGATTGGAAT+GGG + chr7_1:74081356-74081375 None:intergenic 35.0%
!!! TCTGACTTTTAGGATTGGAA+TGG + chr7_1:74081357-74081376 None:intergenic 35.0%
!!! TGAGTTCTGACTTTTAGGAT+TGG + chr7_1:74081362-74081381 None:intergenic 35.0%
ATTGCTTTGATCGCAAGTAT+AGG + chr7_1:74081413-74081432 None:intergenic 35.0%
GTACAACTTTGACCATTAGA+TGG + chr7_1:74081460-74081479 None:intergenic 35.0%
!!! TACTAGTTTTTACCATGACG+CGG - chr7_1:74081477-74081496 Msa1037450:intron 35.0%
ATGAATAGTGATCACCATGA+CGG - chr7_1:74081598-74081617 Msa1037450:intron 35.0%
AGACAGATGCTATGACAAAA+AGG - chr7_1:74081693-74081712 Msa1037450:intron 35.0%
TCTCAGAAATAGTGATAGCA+TGG + chr7_1:74081730-74081749 None:intergenic 35.0%
AAAATAATCTCAGTAGCCTC+TGG + chr7_1:74082031-74082050 None:intergenic 35.0%
ACTCAACAATGGTTAACTGT+AGG - chr7_1:74082103-74082122 Msa1037450:intron 35.0%
!!! GCATTTTTAGTGCTTTCTGT+CGG - chr7_1:74082153-74082172 Msa1037450:intron 35.0%
TGACTGTCTCCTACAAATTT+AGG - chr7_1:74082202-74082221 Msa1037450:intron 35.0%
! AATCTTATTTGTTAGGGCTG+TGG - chr7_1:74082279-74082298 Msa1037450:CDS 35.0%
! CGTGGATTATATATCCAGTG+AGG + chr7_1:74078610-74078629 None:intergenic 40.0%
GTGATGGTCCATCATGATTT+GGG + chr7_1:74078805-74078824 None:intergenic 40.0%
TGTGATGGTCCATCATGATT+TGG + chr7_1:74078806-74078825 None:intergenic 40.0%
! ATGATGGTGATGAGGAATTG+AGG + chr7_1:74078898-74078917 None:intergenic 40.0%
! TGCAATACATGATGGTGATG+AGG + chr7_1:74078906-74078925 None:intergenic 40.0%
GACATCACTGCAATACATGA+TGG + chr7_1:74078914-74078933 None:intergenic 40.0%
GTCTTCAAATGCATGCTCAA+TGG - chr7_1:74078956-74078975 Msa1037450:intron 40.0%
CTTCAAATGCATGCTCAATG+GGG - chr7_1:74078958-74078977 Msa1037450:intron 40.0%
TTCTCATTAAACCAGTTCGC+AGG - chr7_1:74078990-74079009 Msa1037450:intron 40.0%
!! CACAGAAGCACTAGAATGAT+TGG + chr7_1:74079227-74079246 None:intergenic 40.0%
CAATCATTCTAGTGCTTCTG+TGG - chr7_1:74079225-74079244 Msa1037450:CDS 40.0%
GAAATTTAGATGGCGTGCAT+AGG + chr7_1:74079311-74079330 None:intergenic 40.0%
GAAATTTCCCTCAAGTTTGC+AGG + chr7_1:74079495-74079514 None:intergenic 40.0%
! AGAAGTGAAGGTACAAGAGT+TGG + chr7_1:74079548-74079567 None:intergenic 40.0%
ACTTGAAGAACTCTTCAGGT+GGG + chr7_1:74079626-74079645 None:intergenic 40.0%
AACTTGAAGAACTCTTCAGG+TGG + chr7_1:74079627-74079646 None:intergenic 40.0%
AAGTTTGACCAATACTGACC+AGG - chr7_1:74079642-74079661 Msa1037450:CDS 40.0%
GTTATATACCTCCAGTTTCG+TGG + chr7_1:74079717-74079736 None:intergenic 40.0%
GGGTGTGACAAAATTTCAAC+AGG - chr7_1:74079849-74079868 Msa1037450:intron 40.0%
! GAAAACCGTGATGAAGTGTT+AGG - chr7_1:74079909-74079928 Msa1037450:intron 40.0%
CTGTTCCTAACACTTCATCA+CGG + chr7_1:74079917-74079936 None:intergenic 40.0%
CTTTCTTCAGTGGTAGGTTT+AGG + chr7_1:74080158-74080177 None:intergenic 40.0%
! CATGATTTTTACCCCTTTCC+CGG - chr7_1:74080373-74080392 Msa1037450:intron 40.0%
GTAACAGCATAAACAAGACC+GGG + chr7_1:74080394-74080413 None:intergenic 40.0%
ACAGAGTTTGAATCTCACCA+GGG + chr7_1:74080681-74080700 None:intergenic 40.0%
!!! GTTGAGAGCTCTTGTTTTGT+TGG - chr7_1:74080901-74080920 Msa1037450:CDS 40.0%
!!! ACTGATTTTGGTGTCCAACT+AGG + chr7_1:74081292-74081311 None:intergenic 40.0%
!!! ACTTTTAGGATTGGAATGGG+AGG + chr7_1:74081353-74081372 None:intergenic 40.0%
!!! GGTTCTGAGTTCTGACTTTT+AGG + chr7_1:74081367-74081386 None:intergenic 40.0%
ATGCATGACTCTCCATCTAA+TGG - chr7_1:74081445-74081464 Msa1037450:intron 40.0%
TCTTGCCTACAATAGCTGAA+GGG + chr7_1:74081561-74081580 None:intergenic 40.0%
TTCTTGCCTACAATAGCTGA+AGG + chr7_1:74081562-74081581 None:intergenic 40.0%
TGAATAGTGATCACCATGAC+GGG - chr7_1:74081599-74081618 Msa1037450:intron 40.0%
TTGTTAGAGCTGCTTCTCTT+TGG + chr7_1:74081654-74081673 None:intergenic 40.0%
CAGAAATAGTGATAGCATGG+TGG + chr7_1:74081727-74081746 None:intergenic 40.0%
! GTCTTTTCCGGCTTTCATAT+CGG + chr7_1:74081936-74081955 None:intergenic 40.0%
ATATGAAAGCCGGAAAAGAC+AGG - chr7_1:74081936-74081955 Msa1037450:intron 40.0%
GCTTATGTCTAATAACGACG+AGG - chr7_1:74082313-74082332 Msa1037450:CDS 40.0%
CAATACTTCCAGCTAAAAGC+AGG + chr7_1:74082346-74082365 None:intergenic 40.0%
! AGTAAGACCCTAAGCATCGT+GGG + chr7_1:74078449-74078468 None:intergenic 45.0%
ATGTGGCGAGTAGAATCATC+AGG + chr7_1:74078479-74078498 None:intergenic 45.0%
TCTACAATATCGCTCCTCAC+TGG - chr7_1:74078593-74078612 Msa1037450:three_prime_UTR 45.0%
!! AGCAGTTCGTGATGGGTTAA+AGG - chr7_1:74078683-74078702 Msa1037450:three_prime_UTR 45.0%
!! TTCGTGATGGGTTAAAGGCA+TGG - chr7_1:74078688-74078707 Msa1037450:three_prime_UTR 45.0%
!! TCGTGATGGGTTAAAGGCAT+GGG - chr7_1:74078689-74078708 Msa1037450:three_prime_UTR 45.0%
AACCAGAGATTGATGGGAGT+GGG + chr7_1:74078770-74078789 None:intergenic 45.0%
AAACCAGAGATTGATGGGAG+TGG + chr7_1:74078771-74078790 None:intergenic 45.0%
GGAATGAGCTTAGGAACTTG+TGG - chr7_1:74079011-74079030 Msa1037450:intron 45.0%
TTGCTTCACCTGGTCAGTAT+TGG + chr7_1:74079653-74079672 None:intergenic 45.0%
GCTGAGTATAACCACGAAAC+TGG - chr7_1:74079703-74079722 Msa1037450:CDS 45.0%
GAGTATAACCACGAAACTGG+AGG - chr7_1:74079706-74079725 Msa1037450:CDS 45.0%
GATCTAGAAGACCATTCTGC+TGG - chr7_1:74079990-74080009 Msa1037450:intron 45.0%
AGTCAATAGCTCCAGCAGAA+TGG + chr7_1:74080004-74080023 None:intergenic 45.0%
!! TGCTGGAGCTATTGACTTGA+TGG - chr7_1:74080007-74080026 Msa1037450:intron 45.0%
! CCAAGAAAACGCAGAAGCAT+TGG + chr7_1:74080198-74080217 None:intergenic 45.0%
! CCAATGCTTCTGCGTTTTCT+TGG - chr7_1:74080195-74080214 Msa1037450:intron 45.0%
CATAAACAAGACCGGGAAAG+GGG + chr7_1:74080387-74080406 None:intergenic 45.0%
GCATAAACAAGACCGGGAAA+GGG + chr7_1:74080388-74080407 None:intergenic 45.0%
AGCATAAACAAGACCGGGAA+AGG + chr7_1:74080389-74080408 None:intergenic 45.0%
!! TTGTCTTTGGAAGCACCAAC+TGG - chr7_1:74080498-74080517 Msa1037450:intron 45.0%
GACCATATTACAACTGTCCC+TGG - chr7_1:74080661-74080680 Msa1037450:CDS 45.0%
CACCAGGGACAGTTGTAATA+TGG + chr7_1:74080666-74080685 None:intergenic 45.0%
GACAGAGTTTGAATCTCACC+AGG + chr7_1:74080682-74080701 None:intergenic 45.0%
GAGATTCAAACTCTGTCTCG+AGG - chr7_1:74080685-74080704 Msa1037450:CDS 45.0%
ACTCTGTCTCGAGGTTATAC+AGG - chr7_1:74080694-74080713 Msa1037450:CDS 45.0%
CTGCTGCCATAACTGCAAAT+GGG + chr7_1:74081007-74081026 None:intergenic 45.0%
ACTGCTGCCATAACTGCAAA+TGG + chr7_1:74081008-74081027 None:intergenic 45.0%
TTGCAGTTATGGCAGCAGTA+TGG - chr7_1:74081009-74081028 Msa1037450:intron 45.0%
! TATCTGGTGATTGGTCAGTC+TGG - chr7_1:74081145-74081164 Msa1037450:CDS 45.0%
CTTGAATTCTTTCCAGCCAC+CGG - chr7_1:74081190-74081209 Msa1037450:intron 45.0%
TTGAATTCTTTCCAGCCACC+GGG - chr7_1:74081191-74081210 Msa1037450:intron 45.0%
TCGATGTTCAACGCACAATC+AGG - chr7_1:74081259-74081278 Msa1037450:intron 45.0%
AATCAGGCATGCATCCTAGT+TGG - chr7_1:74081275-74081294 Msa1037450:intron 45.0%
GAGGAAATACTTGCGGGAAA+TGG + chr7_1:74081334-74081353 None:intergenic 45.0%
GAATGGGAGGAAATACTTGC+GGG + chr7_1:74081340-74081359 None:intergenic 45.0%
GGAATGGGAGGAAATACTTG+CGG + chr7_1:74081341-74081360 None:intergenic 45.0%
AGAACTCAGAACCTCATCAC+TGG - chr7_1:74081374-74081393 Msa1037450:intron 45.0%
GCTTTGATCGCAAGTATAGG+TGG + chr7_1:74081410-74081429 None:intergenic 45.0%
AATGCCCCTTCAGCTATTGT+AGG - chr7_1:74081553-74081572 Msa1037450:CDS 45.0%
CTTGCCTACAATAGCTGAAG+GGG + chr7_1:74081560-74081579 None:intergenic 45.0%
GTTTGGAAACTTCTACAGCG+TGG - chr7_1:74081830-74081849 Msa1037450:CDS 45.0%
TACAGGTCCGATATGAAAGC+CGG - chr7_1:74081926-74081945 Msa1037450:intron 45.0%
! CAGTTTGTTCGCCAAGTACA+GGG - chr7_1:74081985-74082004 Msa1037450:CDS 45.0%
TCCAGCTAAAAGCAGGATCT+TGG + chr7_1:74082339-74082358 None:intergenic 45.0%
!!! TAGAAATATTTTTTTATTAT+AGG - chr7_1:74081760-74081779 Msa1037450:CDS 5.0%
!!! AGAAATATTTTTTTATTATA+GGG - chr7_1:74081761-74081780 Msa1037450:CDS 5.0%
TTGTTCCTCCCACGATGCTT+AGG - chr7_1:74078438-74078457 Msa1037450:three_prime_UTR 50.0%
TGTTCCTCCCACGATGCTTA+GGG - chr7_1:74078439-74078458 Msa1037450:three_prime_UTR 50.0%
! GAGTAAGACCCTAAGCATCG+TGG + chr7_1:74078450-74078469 None:intergenic 50.0%
TCTGCACTTCTTCGCAACTG+CGG - chr7_1:74078503-74078522 Msa1037450:three_prime_UTR 50.0%
CAGTTGCAGCAGTTCGTGAT+GGG - chr7_1:74078676-74078695 Msa1037450:three_prime_UTR 50.0%
CTAAGCTCATTCCTGCGAAC+TGG + chr7_1:74079004-74079023 None:intergenic 50.0%
CAGTTCGCAGGAATGAGCTT+AGG - chr7_1:74079002-74079021 Msa1037450:intron 50.0%
CCACTCTCCTGCAAACTTGA+GGG - chr7_1:74079485-74079504 Msa1037450:CDS 50.0%
GTAGGTTTAGGTGAGATGCC+AGG + chr7_1:74080146-74080165 None:intergenic 50.0%
!! TCTTTGGAAGCACCAACTGG+TGG - chr7_1:74080501-74080520 Msa1037450:intron 50.0%
!! CAAAAGGTGTCGCAGCTCAA+TGG + chr7_1:74080730-74080749 None:intergenic 50.0%
! CATTGAGCTGCGACACCTTT+TGG - chr7_1:74080728-74080747 Msa1037450:CDS 50.0%
TGAATTCTTTCCAGCCACCG+GGG - chr7_1:74081192-74081211 Msa1037450:intron 50.0%
CTTATTATCGGAAGTGGCCC+CGG + chr7_1:74081212-74081231 None:intergenic 50.0%
CTCAGAACCTCATCACTGGT+TGG - chr7_1:74081378-74081397 Msa1037450:intron 50.0%
GCATCATCCAACCAGTGATG+AGG + chr7_1:74081388-74081407 None:intergenic 50.0%
AGTCATAACGCCAGTGGTGT+GGG - chr7_1:74081502-74081521 Msa1037450:CDS 50.0%
TTCCATCACTTACGCTGCCT+AGG + chr7_1:74081534-74081553 None:intergenic 50.0%
TTGTGTCTCTAAGCCCGTCA+TGG + chr7_1:74081615-74081634 None:intergenic 50.0%
TAGAGCTGCTTCTCTTTGGC+TGG + chr7_1:74081650-74081669 None:intergenic 50.0%
! GGTTCTCTGCCTGTCTTTTC+CGG + chr7_1:74081948-74081967 None:intergenic 50.0%
AACAAACTGCCCTTTCACCC+GGG + chr7_1:74081974-74081993 None:intergenic 50.0%
GAACAAACTGCCCTTTCACC+CGG + chr7_1:74081975-74081994 None:intergenic 50.0%
! GCAGTTTGTTCGCCAAGTAC+AGG - chr7_1:74081984-74082003 Msa1037450:CDS 50.0%
GCCAAGTACAGGGTGAACTT+GGG - chr7_1:74081995-74082014 Msa1037450:CDS 50.0%
CCAAGTACAGGGTGAACTTG+GGG - chr7_1:74081996-74082015 Msa1037450:CDS 50.0%
!! GCCAAGATCCTGCTTTTAGC+TGG - chr7_1:74082335-74082354 Msa1037450:CDS 50.0%
! AAGACCCTAAGCATCGTGGG+AGG + chr7_1:74078446-74078465 None:intergenic 55.0%
CTTCGCAACTGCGGCTACAA+AGG - chr7_1:74078512-74078531 Msa1037450:three_prime_UTR 55.0%
GCAGTTGCAGCAGTTCGTGA+TGG - chr7_1:74078675-74078694 Msa1037450:three_prime_UTR 55.0%
CTCCCACTCCCATCAATCTC+TGG - chr7_1:74078765-74078784 Msa1037450:CDS 55.0%
GGAACTTGTGGCAGCATGTC+TGG - chr7_1:74079023-74079042 Msa1037450:intron 55.0%
GCCACTCTCCTGCAAACTTG+AGG - chr7_1:74079484-74079503 Msa1037450:CDS 55.0%
CCCTCAAGTTTGCAGGAGAG+TGG + chr7_1:74079488-74079507 None:intergenic 55.0%
CGTTATGACTCTCCGCGTCA+TGG + chr7_1:74081492-74081511 None:intergenic 55.0%
GAGTCATAACGCCAGTGGTG+TGG - chr7_1:74081501-74081520 Msa1037450:CDS 55.0%
ACAAACTGCCCTTTCACCCG+GGG + chr7_1:74081973-74081992 None:intergenic 55.0%
CGCCAAGTACAGGGTGAACT+TGG - chr7_1:74081994-74082013 Msa1037450:CDS 55.0%
CCCCAAGTTCACCCTGTACT+TGG + chr7_1:74081999-74082018 None:intergenic 55.0%
CTTGGGGTAGCTGAAACCAG+AGG - chr7_1:74082012-74082031 Msa1037450:CDS 55.0%
ATTATCGGAAGTGGCCCCGG+TGG + chr7_1:74081209-74081228 None:intergenic 60.0%
GCGGAGAGTCATAACGCCAG+TGG - chr7_1:74081496-74081515 Msa1037450:CDS 60.0%
AACGCCAGTGGTGTGGGTGA+AGG - chr7_1:74081508-74081527 Msa1037450:CDS 60.0%
TAGGCCTTCACCCACACCAC+TGG + chr7_1:74081515-74081534 None:intergenic 60.0%
AGTGGTGTGGGTGAAGGCCT+AGG - chr7_1:74081514-74081533 Msa1037450:CDS 60.0%
GGCCTAGGCAGCGTAAGTGA+TGG - chr7_1:74081529-74081548 Msa1037450:CDS 60.0%
CAAACTGCCCTTTCACCCGG+GGG + chr7_1:74081972-74081991 None:intergenic 60.0%
AGAACCGCCCCCGGGTGAAA+GGG - chr7_1:74081962-74081981 Msa1037450:CDS 65.0%
GACAGGCAGAGAACCGCCCC+CGG - chr7_1:74081953-74081972 Msa1037450:CDS 70.0%
ACAGGCAGAGAACCGCCCCC+GGG - chr7_1:74081954-74081973 Msa1037450:CDS 70.0%
GAGAACCGCCCCCGGGTGAA+AGG - chr7_1:74081961-74081980 Msa1037450:CDS 70.0%
ACTGCCCTTTCACCCGGGGG+CGG + chr7_1:74081969-74081988 None:intergenic 70.0%
TCGGAAGTGGCCCCGGTGGC+TGG + chr7_1:74081205-74081224 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74078413 74082375 74078413 ID=Msa1037450;Name=Msa1037450
chr7_1 mRNA 74078413 74082375 74078413 ID=Msa1037450-mRNA-1;Parent=Msa1037450;Name=Msa1037450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.71|0.5|1|1|1|8|334|630
chr7_1 exon 74078413 74078857 74078413 ID=Msa1037450-mRNA-1:exon:18572;Parent=Msa1037450-mRNA-1
chr7_1 exon 74079074 74079773 74079074 ID=Msa1037450-mRNA-1:exon:18571;Parent=Msa1037450-mRNA-1
chr7_1 exon 74080572 74080971 74080572 ID=Msa1037450-mRNA-1:exon:18570;Parent=Msa1037450-mRNA-1
chr7_1 exon 74081061 74081172 74081061 ID=Msa1037450-mRNA-1:exon:18569;Parent=Msa1037450-mRNA-1
chr7_1 exon 74081491 74081604 74081491 ID=Msa1037450-mRNA-1:exon:18568;Parent=Msa1037450-mRNA-1
chr7_1 exon 74081698 74081861 74081698 ID=Msa1037450-mRNA-1:exon:18567;Parent=Msa1037450-mRNA-1
chr7_1 exon 74081939 74082109 74081939 ID=Msa1037450-mRNA-1:exon:18566;Parent=Msa1037450-mRNA-1
chr7_1 exon 74082255 74082375 74082255 ID=Msa1037450-mRNA-1:exon:18565;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74082255 74082375 74082255 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74081939 74082109 74081939 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74081698 74081861 74081698 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74081491 74081604 74081491 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74081061 74081172 74081061 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74080572 74080971 74080572 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74079074 74079773 74079074 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 CDS 74078747 74078857 74078747 ID=Msa1037450-mRNA-1:cds;Parent=Msa1037450-mRNA-1
chr7_1 three_prime_UTR 74078413 74078746 74078413 ID=Msa1037450-mRNA-1:three_prime_utr;Parent=Msa1037450-mRNA-1
Gene Sequence

>Msa1037450

ATGGGCGATGAGAACAATCACAAGTTTGTTCCTCCCACGATGCTTAGGGTCTTACTCGTTGAACCTGATGATTCTACTCGCCACATTATTTCTGCACTTCTTCGCAACTGCGGCTACAAAGTTGCAGCAGTTCGTGATGGGTTAAAGGCATGGGAAACATTGAAGAATAAATCACTTGACATAGATCTCGTATTAACAGAAGTTGATCTCCCACTCCCATCAATCTCTGGTTTTCAACTACTTACCCAAATCATGATGGACCATCACAATTGCAAAAACATTCCTCTCATAATGATGTCTTCTCAAGATTCAGTTAGCACGGTCTTCAAATGCATGCTCAATGGGGCTGTTGATTTTCTCATTAAACCAGTTCGCAGGAATGAGCTTAGGAACTTGTGGCAGCATGTCTGGAGAAGAAGAAATACTACTACTACTACTACTACTACTACTACTACTAATAAACTTGATGATGTTGCTGCAGAAAACAATGCTGCAACCAATCATTCTAGTGCTTCTGTGGCTTCCACGCACAAATATATTGAATGCACTCAAAAAATTAGTGAGGCTCATGATATGTCCCACCTGAAGAGTTCTTCAAGTTTGACCAATACTGACCAGGTGAAGCAAGTTAATTCTATCAAATATGAAAGGGAGTCGGCTGAGTATAACCACGAAACTGGAGAGAAATCAACTATAATAGCATCAAAAGCTGCAGGGTGTGACAAAATTTCAACAGGTTTAATGCTTGGTCAAAACTATGATTATAGTGAAACAGAAAACCGTGATGAAGTGTTAGGAACAGAGTTAAGCAAAGCCAGTCCTCATAATAATACAAAGATTCATCAAAGCAATAATGATCTAGAAGACCATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTGATAAACTTCCAAAGAGCAATCATGCAAATTGTAGTTTCAGTGATGGTAATACCGCCAAGTTTGATTTTGATACACAATTTGAACTTTCTTTACAAAGAGATTCTCCTGGCATCTCACCTAAACCTACCACTGAAGAAAGACAAATATTGAATCATTCCAATGCTTCTGCGTTTTCTTGTTATGGCAGCAGTATGGTGTTGCAGCCTTTATTTCCAACAAAGAGTTCTCATGAATCACAAAAATTATCTGAAAATATAAATACTACTCATCAGTATGATGGAAAAAAACAAAAGCAGGAAAATATCACATATCTGGTGATTGGTCAGTCTGGACAAGTTGATACAAAATGTCAACTTGAATTCTTTCCAGCCACCGGGGCCACTTCCGATAATAAGTCTATGGAACATGATAACGTTTTACATTCGATGTTCAACGCACAATCAGGCATGCATCCTAGTTGGACACCAAAATCAGTGTTCCAAAAAGAGAGTTCTCCATTTCCCGCAAGTATTTCCTCCCATTCCAATCCTAAAAGTCAGAACTCAGAACCTCATCACTGGTTGGATGATGCCACCTATACTTGCGATCAAAGCAATAATGATTGTGCTATGCATGACTCTCCATCTAATGGTCAAAGTTGTACTAGTTTTTACCATGACGCGGAGAGTCATAACGCCAGTGGTGTGGGTGAAGGCCTAGGCAGCGTAAGTGATGGAAATGCCCCTTCAGCTATTGTAGGCAAGAACAACCTTGAAAGTTCTATGAATAGTGATCACCATGACGGGCTTAGAGACACAAGTTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAACCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAGGGTGAACTTGGGGTAGCTGAAACCAGAGGCTACTGA
Protein sequence

>Msa1037450

MGDENNHKFVPPTMLRVLLVEPDDSTRHIISALLRNCGYKVAAVRDGLKAWETLKNKSLDIDLVLTEVDLPLPSISGFQLLTQIMMDHHNCKNIPLIMMSSQDSVSTVFKCMLNGAVDFLIKPVRRNELRNLWQHVWRRRNTTTTTTTTTTTNKLDDVAAENNAATNHSSASVASTHKYIECTQKISEAHDMSHLKSSSSLTNTDQVKQVNSIKYERESAEYNHETGEKSTIIASKAAGCDKISTGLMLGQNYDYSETENRDEVLGTELSKASPHNNTKIHQSNNDLEDHSAGAIDLMATFDKLPKSNHANCSFSDGNTAKFDFDTQFELSLQRDSPGISPKPTTEERQILNHSNASAFSCYGSSMVLQPLFPTKSSHESQKLSENINTTHQYDGKKQKQENITYLVIGQSGQVDTKCQLEFFPATGATSDNKSMEHDNVLHSMFNAQSGMHPSWTPKSVFQKESSPFPASISSHSNPKSQNSEPHHWLDDATYTCDQSNNDCAMHDSPSNGQSCTSFYHDAESHNASGVGEGLGSVSDGNAPSAIVGKNNLESSMNSDHHDGLRDTSSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVQGELGVAETRGY*