Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192780 | RHN69015.1 | 81.818 | 44 | 8 | 0 | 3 | 46 | 26 | 69 | 7.69e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192780 | sp|Q75LL6|TADA2_ORYSJ | 65.854 | 41 | 14 | 0 | 3 | 43 | 126 | 166 | 4.61e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1192780 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1192780 | Msa1327390 | 0.919000 | 7.765702e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192780 | MtrunA17_Chr3g0120191 | 81.818 | 44 | 8 | 0 | 3 | 46 | 26 | 69 | 7.07e-21 | 80.5 |
| Msa1192780 | MtrunA17_Chr3g0120841 | 75.610 | 41 | 10 | 0 | 3 | 43 | 127 | 167 | 3.46e-18 | 78.2 |
| Msa1192780 | MtrunA17_Chr3g0120221 | 83.784 | 37 | 6 | 0 | 7 | 43 | 126 | 162 | 2.43e-17 | 73.2 |
| Msa1192780 | MtrunA17_Chr7g0239471 | 58.537 | 41 | 17 | 0 | 3 | 43 | 122 | 162 | 2.35e-12 | 61.6 |
| Msa1192780 | MtrunA17_Chr2g0290321 | 63.415 | 41 | 15 | 0 | 3 | 43 | 123 | 163 | 3.69e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192780 | AT4G16420.2 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1192780 | AT4G16420.3 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1192780 | AT4G16420.1 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1192780 | AT3G07740.2 | 53.659 | 41 | 19 | 0 | 3 | 43 | 55 | 95 | 1.64e-11 | 59.3 |
| Msa1192780 | AT3G07740.3 | 53.659 | 41 | 19 | 0 | 3 | 43 | 105 | 145 | 1.66e-11 | 59.3 |
| Msa1192780 | AT3G07740.1 | 53.659 | 41 | 19 | 0 | 3 | 43 | 126 | 166 | 1.67e-11 | 59.3 |
| Msa1192780 | AT3G07740.4 | 53.659 | 41 | 19 | 0 | 3 | 43 | 133 | 173 | 1.67e-11 | 59.3 |
Find 22 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGTGGCATCATATATT+TGG | 0.173555 | 8_1:-38737962 | None:intergenic |
| GAACATTCCCTACAGTAAAA+AGG | 0.273505 | 8_1:-38737837 | None:intergenic |
| GCTATTATCATAATGGGAAT+TGG | 0.363985 | 8_1:+38735483 | Msa1192780:CDS |
| TGTCTAACTCTAGAATTTAG+TGG | 0.369382 | 8_1:-38737976 | None:intergenic |
| TTGCAGAGCTATTATCATAA+TGG | 0.371408 | 8_1:+38735476 | None:intergenic |
| GTCTTAAACAATATAATAGA+TGG | 0.385166 | 8_1:-38737897 | None:intergenic |
| TGCAGAGCTATTATCATAAT+GGG | 0.426129 | 8_1:+38735477 | None:intergenic |
| TGTCAATTGATACCCAAAAC+AGG | 0.440009 | 8_1:-38735628 | None:intergenic |
| TATTTGACACTAAATTTATG+TGG | 0.491893 | 8_1:+38737809 | Msa1192780:three_prime_UTR |
| AAAAGTCTAATATTAAGATC+AGG | 0.519983 | 8_1:-38735599 | None:intergenic |
| GCAGCAACAACTGATTCCTC+TGG | 0.530634 | 8_1:+38737752 | Msa1192780:CDS |
| AAAACTTAAATCTGAACAAG+AGG | 0.539019 | 8_1:+38737999 | Msa1192780:three_prime_UTR |
| AATGGTGTTGCTGAAAATGT+TGG | 0.557196 | 8_1:+38735506 | Msa1192780:CDS |
| ATGGTGTTGCTGAAAATGTT+GGG | 0.565724 | 8_1:+38735507 | Msa1192780:CDS |
| TATCATAATGGGAATTGGAA+TGG | 0.568757 | 8_1:+38735488 | Msa1192780:CDS |
| TCAGATATACAACATTATAG+TGG | 0.585833 | 8_1:-38735556 | None:intergenic |
| CTAATATTAAGATCAGGAAG+TGG | 0.589657 | 8_1:-38735593 | None:intergenic |
| AGATCAGGAAGTGGACGACA+TGG | 0.615355 | 8_1:-38735584 | None:intergenic |
| CTTATACTGAGATAATGTAA+CGG | 0.650239 | 8_1:-38737782 | None:intergenic |
| GTCAATTGATACCCAAAACA+GGG | 0.663788 | 8_1:-38735627 | None:intergenic |
| CTTTAGTATCGATTTCACGA+AGG | 0.668239 | 8_1:+38736661 | Msa1192780:intron |
| ATGTAACGGAGCATGTCCAG+AGG | 0.715012 | 8_1:-38737768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTTTTTGAA+TGG | - | chr8_1:38737036-38737055 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTTTTTTTTTTGT+GGG | - | chr8_1:38735794-38735813 | None:intergenic | 15.0% |
| !!! | TTTGTGTTTTTTTTTTTTTG+TGG | - | chr8_1:38735795-38735814 | None:intergenic | 15.0% |
| !!! | AGTTTGTTTTTAACAAAAAA+TGG | - | chr8_1:38735915-38735934 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTGATTTAA+TGG | - | chr8_1:38736254-38736273 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGCAAATATTT+AGG | - | chr8_1:38736566-38736585 | None:intergenic | 15.0% |
| !! | CAAATATATAAAAAAGCTAA+AGG | - | chr8_1:38736770-38736789 | None:intergenic | 15.0% |
| !!! | ATATCAAAATTTGTTTTTAG+AGG | - | chr8_1:38736932-38736951 | None:intergenic | 15.0% |
| !! | ATAAGTTTAGTAATTTCTTA+AGG | - | chr8_1:38737129-38737148 | None:intergenic | 15.0% |
| !!! | AATATCAGAGATTATTTTTT+AGG | + | chr8_1:38737456-38737475 | Msa1192780:intron | 15.0% |
| !! | AAAAGTCTAATATTAAGATC+AGG | - | chr8_1:38735602-38735621 | None:intergenic | 20.0% |
| !! | TTTAATAAGTTGTGATTAAC+AGG | - | chr8_1:38735678-38735697 | None:intergenic | 20.0% |
| !!! | AAAAAATGGTGTTTTTTTTG+AGG | - | chr8_1:38735901-38735920 | None:intergenic | 20.0% |
| !! | CTAGGTTAGAAATAAAATTT+AGG | - | chr8_1:38736271-38736290 | None:intergenic | 20.0% |
| !!! | ATCGTTGTTTTTGAATTTTT+TGG | + | chr8_1:38736308-38736327 | Msa1192780:intron | 20.0% |
| !!! | TCGTTGTTTTTGAATTTTTT+GGG | + | chr8_1:38736309-38736328 | Msa1192780:intron | 20.0% |
| !! | TCAAATAAACTGTGTAATAT+TGG | - | chr8_1:38736387-38736406 | None:intergenic | 20.0% |
| !!! | TTTGATATTTTGACATGATA+TGG | + | chr8_1:38736421-38736440 | Msa1192780:intron | 20.0% |
| !!! | TGTAGTTTGATATTTTTTGA+AGG | + | chr8_1:38736461-38736480 | Msa1192780:intron | 20.0% |
| !! | AATATAGGAAAAGACAATAT+AGG | - | chr8_1:38736822-38736841 | None:intergenic | 20.0% |
| !! | ATCAAATGATGTGATAATAT+AGG | - | chr8_1:38736837-38736856 | None:intergenic | 20.0% |
| !! | TGAATTGAATTGATTATGTT+TGG | + | chr8_1:38736898-38736917 | Msa1192780:intron | 20.0% |
| !!! | AAAACAAATTTTGATATCAG+TGG | + | chr8_1:38736935-38736954 | Msa1192780:intron | 20.0% |
| !!! | AAACAAATTTTGATATCAGT+GGG | + | chr8_1:38736936-38736955 | Msa1192780:intron | 20.0% |
| !!! | CTTAAATTGATTTTACACAA+TGG | + | chr8_1:38737079-38737098 | Msa1192780:intron | 20.0% |
| !! | TTCTTAAGGCTATTATAAAA+GGG | - | chr8_1:38737115-38737134 | None:intergenic | 20.0% |
| !! | TTTCTTAAGGCTATTATAAA+AGG | - | chr8_1:38737116-38737135 | None:intergenic | 20.0% |
| !!! | CAAATAAGGAATTAGTATTT+TGG | + | chr8_1:38737351-38737370 | Msa1192780:intron | 20.0% |
| !! | TAAGTAAATCTTTCAATTGA+TGG | - | chr8_1:38737506-38737525 | None:intergenic | 20.0% |
| !!! | GAAAAAAGGTTTTCTAATTT+TGG | + | chr8_1:38737543-38737562 | Msa1192780:intron | 20.0% |
| !! | TATTTGACACTAAATTTATG+TGG | + | chr8_1:38737809-38737828 | Msa1192780:three_prime_UTR | 20.0% |
| !! | GTCTTAAACAATATAATAGA+TGG | - | chr8_1:38737900-38737919 | None:intergenic | 20.0% |
| !!! | TAATGTGCAATGTTTATTTT+TGG | + | chr8_1:38737920-38737939 | Msa1192780:three_prime_UTR | 20.0% |
| ! | TCAGATATACAACATTATAG+TGG | - | chr8_1:38735559-38735578 | None:intergenic | 25.0% |
| !!! | TGGTTGTTGAAAGTTATTTT+AGG | - | chr8_1:38735716-38735735 | None:intergenic | 25.0% |
| ! | AAGAGGAAATATTCTTCTAT+TGG | - | chr8_1:38735836-38735855 | None:intergenic | 25.0% |
| ! | AACGATTGAAGAAAAAGTAA+GGG | - | chr8_1:38736294-38736313 | None:intergenic | 25.0% |
| !!! | TATTTTTTGAAGGTTTGAGA+AGG | + | chr8_1:38736471-38736490 | Msa1192780:intron | 25.0% |
| !! | TGCAAGTAAGTTCAATTTTA+TGG | + | chr8_1:38736523-38736542 | Msa1192780:intron | 25.0% |
| !! | AAAGGCAAATATTTAGGATA+AGG | - | chr8_1:38736560-38736579 | None:intergenic | 25.0% |
| ! | TTCAAAGCTTAAACTTTCTT+AGG | + | chr8_1:38736607-38736626 | Msa1192780:intron | 25.0% |
| ! | TCAAAGCTTAAACTTTCTTA+GGG | + | chr8_1:38736608-38736627 | Msa1192780:intron | 25.0% |
| !! | TCGTATATGTTTTTCTTTGT+AGG | + | chr8_1:38736638-38736657 | Msa1192780:intron | 25.0% |
| ! | AAAAGACAATATAGGAAAAG+AGG | - | chr8_1:38736814-38736833 | None:intergenic | 25.0% |
| ! | TTCTATATATAACGTTGTGT+TGG | + | chr8_1:38737212-38737231 | Msa1192780:intron | 25.0% |
| ! | TCCTATATAGAAGACAAATA+AGG | + | chr8_1:38737337-38737356 | Msa1192780:intron | 25.0% |
| !! | TCCTTATTTGTCTTCTATAT+AGG | - | chr8_1:38737341-38737360 | None:intergenic | 25.0% |
| !!! | AATCTTTCAATTGATGGTTT+TGG | - | chr8_1:38737500-38737519 | None:intergenic | 25.0% |
| !!! | AACTGTATGATAAAGTATTG+TGG | + | chr8_1:38737587-38737606 | Msa1192780:intron | 25.0% |
| !!! | ACTGTATGATAAAGTATTGT+GGG | + | chr8_1:38737588-38737607 | Msa1192780:intron | 25.0% |
| ! | CTTATACTGAGATAATGTAA+CGG | - | chr8_1:38737785-38737804 | None:intergenic | 25.0% |
| !!! | TGCAATGTTTATTTTTGGAT+TGG | + | chr8_1:38737925-38737944 | Msa1192780:three_prime_UTR | 25.0% |
| ! | ATTTAGTGGCATCATATATT+TGG | - | chr8_1:38737965-38737984 | None:intergenic | 25.0% |
| ! | GCTATTATCATAATGGGAAT+TGG | + | chr8_1:38735483-38735502 | Msa1192780:CDS | 30.0% |
| ! | TATCATAATGGGAATTGGAA+TGG | + | chr8_1:38735488-38735507 | Msa1192780:CDS | 30.0% |
| CTAATATTAAGATCAGGAAG+TGG | - | chr8_1:38735596-38735615 | None:intergenic | 30.0% | |
| !!! | AATGGTGTTTTTTTTGAGGT+GGG | - | chr8_1:38735897-38735916 | None:intergenic | 30.0% |
| !!! | AAATGGTGTTTTTTTTGAGG+TGG | - | chr8_1:38735898-38735917 | None:intergenic | 30.0% |
| ATTCAAATTTCCCCCTTAAA+AGG | + | chr8_1:38736035-38736054 | Msa1192780:intron | 30.0% | |
| ! | ATGTTCGTTTGACCTTTTAA+GGG | - | chr8_1:38736050-38736069 | None:intergenic | 30.0% |
| GAAAGAAACAAATTGAGAGA+GGG | - | chr8_1:38736073-38736092 | None:intergenic | 30.0% | |
| AGAAAGAAACAAATTGAGAG+AGG | - | chr8_1:38736074-38736093 | None:intergenic | 30.0% | |
| CAACGATTGAAGAAAAAGTA+AGG | - | chr8_1:38736295-38736314 | None:intergenic | 30.0% | |
| TGATCAGCACGAAAAAAAAA+AGG | - | chr8_1:38736578-38736597 | None:intergenic | 30.0% | |
| CAAAGCTTAAACTTTCTTAG+GGG | + | chr8_1:38736609-38736628 | Msa1192780:intron | 30.0% | |
| AAAGCTTAAACTTTCTTAGG+GGG | + | chr8_1:38736610-38736629 | Msa1192780:intron | 30.0% | |
| CAACAACAACTACTAATACA+TGG | - | chr8_1:38736860-38736879 | None:intergenic | 30.0% | |
| !!! | AGTAGTTGTTGTTGTTGTTT+TGG | + | chr8_1:38736866-38736885 | Msa1192780:intron | 30.0% |
| !! | AATTGATTTTACACAATGGC+TGG | + | chr8_1:38737083-38737102 | Msa1192780:intron | 30.0% |
| TGCTAAGTAACTTGATCATT+CGG | + | chr8_1:38737150-38737169 | Msa1192780:intron | 30.0% | |
| ! | ACTTAGAATGTTTCTGATAG+TGG | + | chr8_1:38737521-38737540 | Msa1192780:intron | 30.0% |
| !! | TGTTTCTGATAGTGGAAAAA+AGG | + | chr8_1:38737529-38737548 | Msa1192780:intron | 30.0% |
| !! | CTAATTTTGGAGAAAATCGA+TGG | + | chr8_1:38737556-38737575 | Msa1192780:intron | 30.0% |
| !! | CTGTATGATAAAGTATTGTG+GGG | + | chr8_1:38737589-38737608 | Msa1192780:intron | 30.0% |
| !!! | TAAAGTATTGTGGGGATTTT+AGG | + | chr8_1:38737597-38737616 | Msa1192780:intron | 30.0% |
| !!! | TTATTTTTGGATTGGTTCCT+TGG | + | chr8_1:38737933-38737952 | Msa1192780:three_prime_UTR | 30.0% |
| ! | CATATATTTGGATTTTGCCA+AGG | - | chr8_1:38737953-38737972 | None:intergenic | 30.0% |
| !! | TGTCTAACTCTAGAATTTAG+TGG | - | chr8_1:38737979-38737998 | None:intergenic | 30.0% |
| !! | AATGGTGTTGCTGAAAATGT+TGG | + | chr8_1:38735506-38735525 | Msa1192780:CDS | 35.0% |
| !! | ATGGTGTTGCTGAAAATGTT+GGG | + | chr8_1:38735507-38735526 | Msa1192780:CDS | 35.0% |
| !!! | ACTTTTTGAAGCCCTGTTTT+GGG | + | chr8_1:38735616-38735635 | Msa1192780:CDS | 35.0% |
| GTCAATTGATACCCAAAACA+GGG | - | chr8_1:38735630-38735649 | None:intergenic | 35.0% | |
| TGTCAATTGATACCCAAAAC+AGG | - | chr8_1:38735631-38735650 | None:intergenic | 35.0% | |
| ! | TCTTTTTCCTTCTCTCTGAA+TGG | - | chr8_1:38735740-38735759 | None:intergenic | 35.0% |
| GCATATACCTCAAGTGAAAT+GGG | - | chr8_1:38735765-38735784 | None:intergenic | 35.0% | |
| AGCATATACCTCAAGTGAAA+TGG | - | chr8_1:38735766-38735785 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGAGAGAAAG+AGG | - | chr8_1:38735853-38735872 | None:intergenic | 35.0% | |
| GGAAAAGATGAAAGCAAAGA+AGG | - | chr8_1:38735869-38735888 | None:intergenic | 35.0% | |
| !!! | ATGGTGTTTTTTTTGAGGTG+GGG | - | chr8_1:38735896-38735915 | None:intergenic | 35.0% |
| ACTATGTACTGTACAAACAC+AGG | + | chr8_1:38735932-38735951 | Msa1192780:intron | 35.0% | |
| ATAGTTCAGAAATTGCAGAG+CGG | - | chr8_1:38736001-38736020 | None:intergenic | 35.0% | |
| ! | TGTTCGTTTGACCTTTTAAG+GGG | - | chr8_1:38736049-38736068 | None:intergenic | 35.0% |
| ! | GATGTTCGTTTGACCTTTTA+AGG | - | chr8_1:38736051-38736070 | None:intergenic | 35.0% |
| ! | TCTGTTACTATAGATTGGTC+TGG | - | chr8_1:38736177-38736196 | None:intergenic | 35.0% |
| AGAGCTCTGTTACTATAGAT+TGG | - | chr8_1:38736182-38736201 | None:intergenic | 35.0% | |
| AACAGAGCTCTTCTTCATTA+AGG | + | chr8_1:38736191-38736210 | Msa1192780:intron | 35.0% | |
| ACAGAGCTCTTCTTCATTAA+GGG | + | chr8_1:38736192-38736211 | Msa1192780:intron | 35.0% | |
| TCTTCTTCATTAAGGGTAAG+CGG | + | chr8_1:38736199-38736218 | Msa1192780:intron | 35.0% | |
| TTGAAGAAAAAGTAAGGGCT+AGG | - | chr8_1:38736289-38736308 | None:intergenic | 35.0% | |
| TACTCAAACACAGCTATACT+GGG | - | chr8_1:38736351-38736370 | None:intergenic | 35.0% | |
| TTACTCAAACACAGCTATAC+TGG | - | chr8_1:38736352-38736371 | None:intergenic | 35.0% | |
| AGCAACTTTACTAAGCTCAT+AGG | - | chr8_1:38736503-38736522 | None:intergenic | 35.0% | |
| !! | CTTTAGTATCGATTTCACGA+AGG | + | chr8_1:38736661-38736680 | Msa1192780:intron | 35.0% |
| ! | TGATTTTTGTTGCAAGAGCA+AGG | + | chr8_1:38736701-38736720 | Msa1192780:CDS | 35.0% |
| ACACTAACATAGAAGAACAG+AGG | + | chr8_1:38736981-38737000 | Msa1192780:intron | 35.0% | |
| !! | TAACTTGATCATTCGGTGTT+TGG | + | chr8_1:38737157-38737176 | Msa1192780:intron | 35.0% |
| AGTAGATCAGATGCATGATA+TGG | - | chr8_1:38737241-38737260 | None:intergenic | 35.0% | |
| ATCATGTGCACAAACAAAGT+AGG | - | chr8_1:38737632-38737651 | None:intergenic | 35.0% | |
| GAACATTCCCTACAGTAAAA+AGG | - | chr8_1:38737840-38737859 | None:intergenic | 35.0% | |
| !!! | GACTTTTTGAAGCCCTGTTT+TGG | + | chr8_1:38735615-38735634 | Msa1192780:CDS | 40.0% |
| TTTCCTTCTCTCTGAATGGT+TGG | - | chr8_1:38735736-38735755 | None:intergenic | 40.0% | |
| AAAGAGACCCATTTCACTTG+AGG | + | chr8_1:38735755-38735774 | Msa1192780:intron | 40.0% | |
| !!! | TTTTTTTTGAGGTGGGGAAG+GGG | - | chr8_1:38735890-38735909 | None:intergenic | 40.0% |
| !!! | GTTTTTTTTGAGGTGGGGAA+GGG | - | chr8_1:38735891-38735910 | None:intergenic | 40.0% |
| !!! | TGTTTTTTTTGAGGTGGGGA+AGG | - | chr8_1:38735892-38735911 | None:intergenic | 40.0% |
| TAGTTCAGAAATTGCAGAGC+GGG | - | chr8_1:38736000-38736019 | None:intergenic | 40.0% | |
| !! | GTTCGTTTGACCTTTTAAGG+GGG | - | chr8_1:38736048-38736067 | None:intergenic | 40.0% |
| CGAAAACAAAGCCAACGAAA+AGG | - | chr8_1:38736141-38736160 | None:intergenic | 40.0% | |
| CTAACATAGAAGAACAGAGG+AGG | + | chr8_1:38736984-38737003 | Msa1192780:intron | 40.0% | |
| !! | TCATTCGGTGTTTGGTGTAA+AGG | + | chr8_1:38737165-38737184 | Msa1192780:intron | 40.0% |
| TGCACAAAAGCTATGGAGAA+AGG | - | chr8_1:38737694-38737713 | None:intergenic | 40.0% | |
| ! | TGGTGAAGCCTTTTTACTGT+AGG | + | chr8_1:38737829-38737848 | Msa1192780:three_prime_UTR | 40.0% |
| ! | GGTGAAGCCTTTTTACTGTA+GGG | + | chr8_1:38737830-38737849 | Msa1192780:three_prime_UTR | 40.0% |
| CAACCAACCATTCAGAGAGA+AGG | + | chr8_1:38735730-38735749 | Msa1192780:intron | 45.0% | |
| !!! | ACAGGCGTGAGGTTTTGTTT+TGG | + | chr8_1:38735950-38735969 | Msa1192780:intron | 45.0% |
| GAAGAACTCAGCAGTGAAGA+AGG | - | chr8_1:38736119-38736138 | None:intergenic | 45.0% | |
| ! | GCTGAGTTCTTCCTTTTCGT+TGG | + | chr8_1:38736127-38736146 | Msa1192780:intron | 45.0% |
| ! | TCTCCATAGCTTTTGTGCAC+AGG | + | chr8_1:38737695-38737714 | Msa1192780:intron | 45.0% |
| TAGCCTGTGCACAAAAGCTA+TGG | - | chr8_1:38737701-38737720 | None:intergenic | 45.0% | |
| AGATCAGGAAGTGGACGACA+TGG | - | chr8_1:38735587-38735606 | None:intergenic | 50.0% | |
| ACTGTACAAACACAGGCGTG+AGG | + | chr8_1:38735939-38735958 | Msa1192780:intron | 50.0% | |
| ! | GCAGCAACAACTGATTCCTC+TGG | + | chr8_1:38737752-38737771 | Msa1192780:CDS | 50.0% |
| ! | ATGTAACGGAGCATGTCCAG+AGG | - | chr8_1:38737771-38737790 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 38735482 | 38738020 | 38735482 | ID=Msa1192780;Name=Msa1192780 |
| chr8_1 | mRNA | 38735482 | 38738020 | 38735482 | ID=Msa1192780-mRNA-1;Parent=Msa1192780;Name=Msa1192780-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0.5|0.33|0.66|0|0.33|3|217|103 |
| chr8_1 | exon | 38735482 | 38735637 | 38735482 | ID=Msa1192780-mRNA-1:exon:12662;Parent=Msa1192780-mRNA-1 |
| chr8_1 | exon | 38736667 | 38736722 | 38736667 | ID=Msa1192780-mRNA-1:exon:12663;Parent=Msa1192780-mRNA-1 |
| chr8_1 | exon | 38737704 | 38738020 | 38737704 | ID=Msa1192780-mRNA-1:exon:12664;Parent=Msa1192780-mRNA-1 |
| chr8_1 | CDS | 38735482 | 38735637 | 38735482 | ID=Msa1192780-mRNA-1:cds;Parent=Msa1192780-mRNA-1 |
| chr8_1 | CDS | 38736667 | 38736722 | 38736667 | ID=Msa1192780-mRNA-1:cds;Parent=Msa1192780-mRNA-1 |
| chr8_1 | CDS | 38737704 | 38737803 | 38737704 | ID=Msa1192780-mRNA-1:cds;Parent=Msa1192780-mRNA-1 |
| chr8_1 | three_prime_UTR | 38737804 | 38738020 | 38737804 | ID=Msa1192780-mRNA-1:three_prime_utr;Parent=Msa1192780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
