Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327390 | sp|Q75LL6|TADA2_ORYSJ | 65.854 | 41 | 14 | 0 | 3 | 43 | 126 | 166 | 4.61e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327390 | A0A396IY63 | 81.818 | 44 | 8 | 0 | 3 | 46 | 26 | 69 | 3.67e-17 | 80.5 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1327390 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1192780 | Msa1327390 | 0.919000 | 7.765702e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327390 | MtrunA17_Chr3g0120191 | 81.818 | 44 | 8 | 0 | 3 | 46 | 26 | 69 | 7.07e-21 | 80.5 |
| Msa1327390 | MtrunA17_Chr3g0120841 | 75.610 | 41 | 10 | 0 | 3 | 43 | 127 | 167 | 3.46e-18 | 78.2 |
| Msa1327390 | MtrunA17_Chr3g0120221 | 83.784 | 37 | 6 | 0 | 7 | 43 | 126 | 162 | 2.43e-17 | 73.2 |
| Msa1327390 | MtrunA17_Chr7g0239471 | 58.537 | 41 | 17 | 0 | 3 | 43 | 122 | 162 | 2.35e-12 | 61.6 |
| Msa1327390 | MtrunA17_Chr2g0290321 | 63.415 | 41 | 15 | 0 | 3 | 43 | 123 | 163 | 3.69e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327390 | AT4G16420.2 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1327390 | AT4G16420.3 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1327390 | AT4G16420.1 | 63.415 | 41 | 15 | 0 | 3 | 43 | 120 | 160 | 1.11e-12 | 62.8 |
| Msa1327390 | AT3G07740.2 | 53.659 | 41 | 19 | 0 | 3 | 43 | 55 | 95 | 1.64e-11 | 59.3 |
| Msa1327390 | AT3G07740.3 | 53.659 | 41 | 19 | 0 | 3 | 43 | 105 | 145 | 1.66e-11 | 59.3 |
| Msa1327390 | AT3G07740.1 | 53.659 | 41 | 19 | 0 | 3 | 43 | 126 | 166 | 1.67e-11 | 59.3 |
| Msa1327390 | AT3G07740.4 | 53.659 | 41 | 19 | 0 | 3 | 43 | 133 | 173 | 1.67e-11 | 59.3 |
Find 22 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGTGGCATCATATATT+TGG | 0.173555 | 8_4:-44712346 | None:intergenic |
| GAACATTCCCTACAGTAAAA+AGG | 0.273505 | 8_4:-44712221 | None:intergenic |
| GCTATTATCATAATGGGAAT+TGG | 0.363985 | 8_4:+44709868 | Msa1327390:CDS |
| TGTCTAACTCTAGAATTTAG+TGG | 0.369382 | 8_4:-44712360 | None:intergenic |
| TTGCAGAGCTATTATCATAA+TGG | 0.371408 | 8_4:+44709861 | None:intergenic |
| GTCTTAAACAATATAATAGA+TGG | 0.385166 | 8_4:-44712281 | None:intergenic |
| TGCAGAGCTATTATCATAAT+GGG | 0.426129 | 8_4:+44709862 | None:intergenic |
| TGTCAATTGATACCCAAAAC+AGG | 0.440009 | 8_4:-44710013 | None:intergenic |
| TATTTGACACTAAATTTATG+TGG | 0.491893 | 8_4:+44712193 | Msa1327390:three_prime_UTR |
| AAAAGTCTAATATTAAGATC+AGG | 0.519983 | 8_4:-44709984 | None:intergenic |
| GCAGCAACAACTGATTCCTC+TGG | 0.530634 | 8_4:+44712136 | Msa1327390:CDS |
| AAAACTTAAATCTGAACAAG+AGG | 0.539019 | 8_4:+44712383 | Msa1327390:three_prime_UTR |
| AATGGTGTTGCTGAAAATGT+TGG | 0.557196 | 8_4:+44709891 | Msa1327390:CDS |
| ATGGTGTTGCTGAAAATGTT+GGG | 0.565724 | 8_4:+44709892 | Msa1327390:CDS |
| TATCATAATGGGAATTGGAA+TGG | 0.568757 | 8_4:+44709873 | Msa1327390:CDS |
| TCAGATATACAACATTATAG+TGG | 0.585833 | 8_4:-44709941 | None:intergenic |
| CTAATATTAAGATCAGGAAG+TGG | 0.589657 | 8_4:-44709978 | None:intergenic |
| AGATCAGGAAGTGGACGACA+TGG | 0.615355 | 8_4:-44709969 | None:intergenic |
| CTTATACTGAGATAATGTAA+CGG | 0.650239 | 8_4:-44712166 | None:intergenic |
| GTCAATTGATACCCAAAACA+GGG | 0.663788 | 8_4:-44710012 | None:intergenic |
| CTTTAGTATCGATTTCACGA+AGG | 0.668239 | 8_4:+44711046 | Msa1327390:intron |
| ATGTAACGGAGCATGTCCAG+AGG | 0.715012 | 8_4:-44712152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTTTTTGAA+TGG | - | chr8_4:44711421-44711440 | None:intergenic | 10.0% |
| !!! | TGTGTTTTTTTTTTTTTTGT+GGG | - | chr8_4:44710178-44710197 | None:intergenic | 15.0% |
| !!! | TTGTGTTTTTTTTTTTTTTG+TGG | - | chr8_4:44710179-44710198 | None:intergenic | 15.0% |
| !!! | AGTTTGTTTTTAACAAAAAA+TGG | - | chr8_4:44710300-44710319 | None:intergenic | 15.0% |
| !!! | TTTAGGAATTTTTGATTTAA+TGG | - | chr8_4:44710639-44710658 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGCAAATATTT+AGG | - | chr8_4:44710951-44710970 | None:intergenic | 15.0% |
| !! | CAAATATATAAAAAAGCTAA+AGG | - | chr8_4:44711155-44711174 | None:intergenic | 15.0% |
| !!! | ATATCAAAATTTGTTTTTAG+AGG | - | chr8_4:44711317-44711336 | None:intergenic | 15.0% |
| !! | ATAAGTTTAGTAATTTCTTA+AGG | - | chr8_4:44711514-44711533 | None:intergenic | 15.0% |
| !!! | AATATCAGAGATTATTTTTT+AGG | + | chr8_4:44711840-44711859 | Msa1327390:intron | 15.0% |
| !! | AAAAGTCTAATATTAAGATC+AGG | - | chr8_4:44709987-44710006 | None:intergenic | 20.0% |
| !! | TTTAATAAGTTGTGATTAAC+AGG | - | chr8_4:44710063-44710082 | None:intergenic | 20.0% |
| !!! | AAAAAATGGTGTTTTTTTTG+AGG | - | chr8_4:44710286-44710305 | None:intergenic | 20.0% |
| !! | CTAGGTTAGAAATAAAATTT+AGG | - | chr8_4:44710656-44710675 | None:intergenic | 20.0% |
| !!! | ATCGTTGTTTTTGAATTTTT+TGG | + | chr8_4:44710693-44710712 | Msa1327390:intron | 20.0% |
| !!! | TCGTTGTTTTTGAATTTTTT+GGG | + | chr8_4:44710694-44710713 | Msa1327390:intron | 20.0% |
| !! | TCAAATAAACTGTGTAATAT+TGG | - | chr8_4:44710772-44710791 | None:intergenic | 20.0% |
| !!! | TTTGATATTTTGACATGATA+TGG | + | chr8_4:44710806-44710825 | Msa1327390:intron | 20.0% |
| !!! | TGTAGTTTGATATTTTTTGA+AGG | + | chr8_4:44710846-44710865 | Msa1327390:intron | 20.0% |
| !! | AATATAGGAAAAGACAATAT+AGG | - | chr8_4:44711207-44711226 | None:intergenic | 20.0% |
| !! | ATCAAATGATGTGATAATAT+AGG | - | chr8_4:44711222-44711241 | None:intergenic | 20.0% |
| !! | TGAATTGAATTGATTATGTT+TGG | + | chr8_4:44711283-44711302 | Msa1327390:intron | 20.0% |
| !!! | AAAACAAATTTTGATATCAG+TGG | + | chr8_4:44711320-44711339 | Msa1327390:intron | 20.0% |
| !!! | AAACAAATTTTGATATCAGT+GGG | + | chr8_4:44711321-44711340 | Msa1327390:intron | 20.0% |
| !!! | CTTAAATTGATTTTACACAA+TGG | + | chr8_4:44711464-44711483 | Msa1327390:intron | 20.0% |
| !! | TTCTTAAGGCTATTATAAAA+GGG | - | chr8_4:44711500-44711519 | None:intergenic | 20.0% |
| !! | TTTCTTAAGGCTATTATAAA+AGG | - | chr8_4:44711501-44711520 | None:intergenic | 20.0% |
| !!! | CAAATAAGGAATTAGTATTT+TGG | + | chr8_4:44711736-44711755 | Msa1327390:intron | 20.0% |
| !! | TAAGTAAATCTTTCAATTGA+TGG | - | chr8_4:44711890-44711909 | None:intergenic | 20.0% |
| !!! | GAAAAAAGGTTTTCTAATTT+TGG | + | chr8_4:44711927-44711946 | Msa1327390:intron | 20.0% |
| !! | TATTTGACACTAAATTTATG+TGG | + | chr8_4:44712193-44712212 | Msa1327390:three_prime_UTR | 20.0% |
| !! | GTCTTAAACAATATAATAGA+TGG | - | chr8_4:44712284-44712303 | None:intergenic | 20.0% |
| !!! | TAATGTGCAATGTTTATTTT+TGG | + | chr8_4:44712304-44712323 | Msa1327390:three_prime_UTR | 20.0% |
| ! | TCAGATATACAACATTATAG+TGG | - | chr8_4:44709944-44709963 | None:intergenic | 25.0% |
| !!! | TGGTTGTTGAAAGTTATTTT+AGG | - | chr8_4:44710100-44710119 | None:intergenic | 25.0% |
| ! | AAGAGGAAATATTCTTCTAT+TGG | - | chr8_4:44710221-44710240 | None:intergenic | 25.0% |
| ! | AACGATTGAAGAAAAAGTAA+GGG | - | chr8_4:44710679-44710698 | None:intergenic | 25.0% |
| !!! | TATTTTTTGAAGGTTTGAGA+AGG | + | chr8_4:44710856-44710875 | Msa1327390:intron | 25.0% |
| !! | TGCAAGTAAGTTCAATTTTA+TGG | + | chr8_4:44710908-44710927 | Msa1327390:intron | 25.0% |
| !! | AAAGGCAAATATTTAGGATA+AGG | - | chr8_4:44710945-44710964 | None:intergenic | 25.0% |
| ! | TTCAAAGCTTAAACTTTCTT+AGG | + | chr8_4:44710992-44711011 | Msa1327390:intron | 25.0% |
| ! | TCAAAGCTTAAACTTTCTTA+GGG | + | chr8_4:44710993-44711012 | Msa1327390:intron | 25.0% |
| !! | TCGTATATGTTTTTCTTTGT+AGG | + | chr8_4:44711023-44711042 | Msa1327390:intron | 25.0% |
| ! | AAAAGACAATATAGGAAAAG+AGG | - | chr8_4:44711199-44711218 | None:intergenic | 25.0% |
| ! | TTCTATATATAACGTTGTGT+TGG | + | chr8_4:44711597-44711616 | Msa1327390:intron | 25.0% |
| ! | TCCTATATAGAAGACAAATA+AGG | + | chr8_4:44711722-44711741 | Msa1327390:intron | 25.0% |
| !! | TCCTTATTTGTCTTCTATAT+AGG | - | chr8_4:44711726-44711745 | None:intergenic | 25.0% |
| !!! | AATCTTTCAATTGATGGTTT+TGG | - | chr8_4:44711884-44711903 | None:intergenic | 25.0% |
| !!! | AACTGTATGATAAAGTATTG+TGG | + | chr8_4:44711971-44711990 | Msa1327390:intron | 25.0% |
| !!! | ACTGTATGATAAAGTATTGT+GGG | + | chr8_4:44711972-44711991 | Msa1327390:intron | 25.0% |
| ! | CTTATACTGAGATAATGTAA+CGG | - | chr8_4:44712169-44712188 | None:intergenic | 25.0% |
| !!! | TGCAATGTTTATTTTTGGAT+TGG | + | chr8_4:44712309-44712328 | Msa1327390:three_prime_UTR | 25.0% |
| ! | ATTTAGTGGCATCATATATT+TGG | - | chr8_4:44712349-44712368 | None:intergenic | 25.0% |
| ! | GCTATTATCATAATGGGAAT+TGG | + | chr8_4:44709868-44709887 | Msa1327390:CDS | 30.0% |
| ! | TATCATAATGGGAATTGGAA+TGG | + | chr8_4:44709873-44709892 | Msa1327390:CDS | 30.0% |
| CTAATATTAAGATCAGGAAG+TGG | - | chr8_4:44709981-44710000 | None:intergenic | 30.0% | |
| !!! | AATGGTGTTTTTTTTGAGGT+GGG | - | chr8_4:44710282-44710301 | None:intergenic | 30.0% |
| !!! | AAATGGTGTTTTTTTTGAGG+TGG | - | chr8_4:44710283-44710302 | None:intergenic | 30.0% |
| ATTCAAATTTCCCCCTTAAA+AGG | + | chr8_4:44710420-44710439 | Msa1327390:intron | 30.0% | |
| ! | ATGTTCGTTTGACCTTTTAA+GGG | - | chr8_4:44710435-44710454 | None:intergenic | 30.0% |
| GAAAGAAACAAATTGAGAGA+GGG | - | chr8_4:44710458-44710477 | None:intergenic | 30.0% | |
| AGAAAGAAACAAATTGAGAG+AGG | - | chr8_4:44710459-44710478 | None:intergenic | 30.0% | |
| CAACGATTGAAGAAAAAGTA+AGG | - | chr8_4:44710680-44710699 | None:intergenic | 30.0% | |
| TGATCAGCACGAAAAAAAAA+AGG | - | chr8_4:44710963-44710982 | None:intergenic | 30.0% | |
| CAAAGCTTAAACTTTCTTAG+GGG | + | chr8_4:44710994-44711013 | Msa1327390:intron | 30.0% | |
| AAAGCTTAAACTTTCTTAGG+GGG | + | chr8_4:44710995-44711014 | Msa1327390:intron | 30.0% | |
| CAACAACAACTACTAATACA+TGG | - | chr8_4:44711245-44711264 | None:intergenic | 30.0% | |
| !!! | AGTAGTTGTTGTTGTTGTTT+TGG | + | chr8_4:44711251-44711270 | Msa1327390:intron | 30.0% |
| !! | AATTGATTTTACACAATGGC+TGG | + | chr8_4:44711468-44711487 | Msa1327390:intron | 30.0% |
| TGCTAAGTAACTTGATCATT+CGG | + | chr8_4:44711535-44711554 | Msa1327390:intron | 30.0% | |
| ! | ACTTAGAATGTTTCTGATAG+TGG | + | chr8_4:44711905-44711924 | Msa1327390:intron | 30.0% |
| !! | TGTTTCTGATAGTGGAAAAA+AGG | + | chr8_4:44711913-44711932 | Msa1327390:intron | 30.0% |
| !! | CTAATTTTGGAGAAAATCGA+TGG | + | chr8_4:44711940-44711959 | Msa1327390:intron | 30.0% |
| !! | CTGTATGATAAAGTATTGTG+GGG | + | chr8_4:44711973-44711992 | Msa1327390:intron | 30.0% |
| !!! | TAAAGTATTGTGGGGATTTT+AGG | + | chr8_4:44711981-44712000 | Msa1327390:intron | 30.0% |
| !!! | TTATTTTTGGATTGGTTCCT+TGG | + | chr8_4:44712317-44712336 | Msa1327390:three_prime_UTR | 30.0% |
| ! | CATATATTTGGATTTTGCCA+AGG | - | chr8_4:44712337-44712356 | None:intergenic | 30.0% |
| !! | TGTCTAACTCTAGAATTTAG+TGG | - | chr8_4:44712363-44712382 | None:intergenic | 30.0% |
| !! | AATGGTGTTGCTGAAAATGT+TGG | + | chr8_4:44709891-44709910 | Msa1327390:CDS | 35.0% |
| !! | ATGGTGTTGCTGAAAATGTT+GGG | + | chr8_4:44709892-44709911 | Msa1327390:CDS | 35.0% |
| !!! | ACTTTTTGAAGCCCTGTTTT+GGG | + | chr8_4:44710001-44710020 | Msa1327390:CDS | 35.0% |
| GTCAATTGATACCCAAAACA+GGG | - | chr8_4:44710015-44710034 | None:intergenic | 35.0% | |
| TGTCAATTGATACCCAAAAC+AGG | - | chr8_4:44710016-44710035 | None:intergenic | 35.0% | |
| ! | TCTTTTTCCTTCTCTCTGAA+TGG | - | chr8_4:44710124-44710143 | None:intergenic | 35.0% |
| GCATATACCTCAAGTGAAAT+GGG | - | chr8_4:44710149-44710168 | None:intergenic | 35.0% | |
| AGCATATACCTCAAGTGAAA+TGG | - | chr8_4:44710150-44710169 | None:intergenic | 35.0% | |
| AAGAAGGAAAAGAGAGAAAG+AGG | - | chr8_4:44710238-44710257 | None:intergenic | 35.0% | |
| GGAAAAGATGAAAGCAAAGA+AGG | - | chr8_4:44710254-44710273 | None:intergenic | 35.0% | |
| !!! | ATGGTGTTTTTTTTGAGGTG+GGG | - | chr8_4:44710281-44710300 | None:intergenic | 35.0% |
| ACTATGTACTGTACAAACAC+AGG | + | chr8_4:44710317-44710336 | Msa1327390:intron | 35.0% | |
| ATAGTTCAGAAATTGCAGAG+CGG | - | chr8_4:44710386-44710405 | None:intergenic | 35.0% | |
| ! | TGTTCGTTTGACCTTTTAAG+GGG | - | chr8_4:44710434-44710453 | None:intergenic | 35.0% |
| ! | GATGTTCGTTTGACCTTTTA+AGG | - | chr8_4:44710436-44710455 | None:intergenic | 35.0% |
| ! | TCTGTTACTATAGATTGGTC+TGG | - | chr8_4:44710562-44710581 | None:intergenic | 35.0% |
| AGAGCTCTGTTACTATAGAT+TGG | - | chr8_4:44710567-44710586 | None:intergenic | 35.0% | |
| AACAGAGCTCTTCTTCATTA+AGG | + | chr8_4:44710576-44710595 | Msa1327390:intron | 35.0% | |
| ACAGAGCTCTTCTTCATTAA+GGG | + | chr8_4:44710577-44710596 | Msa1327390:intron | 35.0% | |
| TCTTCTTCATTAAGGGTAAG+CGG | + | chr8_4:44710584-44710603 | Msa1327390:intron | 35.0% | |
| TTGAAGAAAAAGTAAGGGCT+AGG | - | chr8_4:44710674-44710693 | None:intergenic | 35.0% | |
| TACTCAAACACAGCTATACT+GGG | - | chr8_4:44710736-44710755 | None:intergenic | 35.0% | |
| TTACTCAAACACAGCTATAC+TGG | - | chr8_4:44710737-44710756 | None:intergenic | 35.0% | |
| AGCAACTTTACTAAGCTCAT+AGG | - | chr8_4:44710888-44710907 | None:intergenic | 35.0% | |
| !! | CTTTAGTATCGATTTCACGA+AGG | + | chr8_4:44711046-44711065 | Msa1327390:intron | 35.0% |
| ! | TGATTTTTGTTGCAAGAGCA+AGG | + | chr8_4:44711086-44711105 | Msa1327390:CDS | 35.0% |
| ACACTAACATAGAAGAACAG+AGG | + | chr8_4:44711366-44711385 | Msa1327390:intron | 35.0% | |
| !! | TAACTTGATCATTCGGTGTT+TGG | + | chr8_4:44711542-44711561 | Msa1327390:intron | 35.0% |
| AGTAGATCAGATGCATGATA+TGG | - | chr8_4:44711626-44711645 | None:intergenic | 35.0% | |
| ATCATGTGCACAAACAAAGT+AGG | - | chr8_4:44712016-44712035 | None:intergenic | 35.0% | |
| GAACATTCCCTACAGTAAAA+AGG | - | chr8_4:44712224-44712243 | None:intergenic | 35.0% | |
| !!! | GACTTTTTGAAGCCCTGTTT+TGG | + | chr8_4:44710000-44710019 | Msa1327390:CDS | 40.0% |
| TTTCCTTCTCTCTGAATGGT+TGG | - | chr8_4:44710120-44710139 | None:intergenic | 40.0% | |
| AAAGAGACCCATTTCACTTG+AGG | + | chr8_4:44710139-44710158 | Msa1327390:intron | 40.0% | |
| !!! | TTTTTTTTGAGGTGGGGAAG+GGG | - | chr8_4:44710275-44710294 | None:intergenic | 40.0% |
| !!! | GTTTTTTTTGAGGTGGGGAA+GGG | - | chr8_4:44710276-44710295 | None:intergenic | 40.0% |
| !!! | TGTTTTTTTTGAGGTGGGGA+AGG | - | chr8_4:44710277-44710296 | None:intergenic | 40.0% |
| TAGTTCAGAAATTGCAGAGC+GGG | - | chr8_4:44710385-44710404 | None:intergenic | 40.0% | |
| !! | GTTCGTTTGACCTTTTAAGG+GGG | - | chr8_4:44710433-44710452 | None:intergenic | 40.0% |
| CGAAAACAAAGCCAACGAAA+AGG | - | chr8_4:44710526-44710545 | None:intergenic | 40.0% | |
| CTAACATAGAAGAACAGAGG+AGG | + | chr8_4:44711369-44711388 | Msa1327390:intron | 40.0% | |
| !! | TCATTCGGTGTTTGGTGTAA+AGG | + | chr8_4:44711550-44711569 | Msa1327390:intron | 40.0% |
| TGCACAAAAGCTATGGAGAA+AGG | - | chr8_4:44712078-44712097 | None:intergenic | 40.0% | |
| ! | TGGTGAAGCCTTTTTACTGT+AGG | + | chr8_4:44712213-44712232 | Msa1327390:three_prime_UTR | 40.0% |
| ! | GGTGAAGCCTTTTTACTGTA+GGG | + | chr8_4:44712214-44712233 | Msa1327390:three_prime_UTR | 40.0% |
| CAACCAACCATTCAGAGAGA+AGG | + | chr8_4:44710114-44710133 | Msa1327390:intron | 45.0% | |
| !!! | ACAGGCGTGAGGTTTTGTTT+TGG | + | chr8_4:44710335-44710354 | Msa1327390:intron | 45.0% |
| GAAGAACTCAGCAGTGAAGA+AGG | - | chr8_4:44710504-44710523 | None:intergenic | 45.0% | |
| ! | GCTGAGTTCTTCCTTTTCGT+TGG | + | chr8_4:44710512-44710531 | Msa1327390:intron | 45.0% |
| ! | TCTCCATAGCTTTTGTGCAC+AGG | + | chr8_4:44712079-44712098 | Msa1327390:intron | 45.0% |
| TAGCCTGTGCACAAAAGCTA+TGG | - | chr8_4:44712085-44712104 | None:intergenic | 45.0% | |
| AGATCAGGAAGTGGACGACA+TGG | - | chr8_4:44709972-44709991 | None:intergenic | 50.0% | |
| ACTGTACAAACACAGGCGTG+AGG | + | chr8_4:44710324-44710343 | Msa1327390:intron | 50.0% | |
| ! | GCAGCAACAACTGATTCCTC+TGG | + | chr8_4:44712136-44712155 | Msa1327390:CDS | 50.0% |
| ! | ATGTAACGGAGCATGTCCAG+AGG | - | chr8_4:44712155-44712174 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 44709867 | 44712404 | 44709867 | ID=Msa1327390;Name=Msa1327390 |
| chr8_4 | mRNA | 44709867 | 44712404 | 44709867 | ID=Msa1327390-mRNA-1;Parent=Msa1327390;Name=Msa1327390-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0.5|0.33|0.66|0|0.33|3|217|103 |
| chr8_4 | exon | 44709867 | 44710022 | 44709867 | ID=Msa1327390-mRNA-1:exon:12469;Parent=Msa1327390-mRNA-1 |
| chr8_4 | exon | 44711052 | 44711107 | 44711052 | ID=Msa1327390-mRNA-1:exon:12470;Parent=Msa1327390-mRNA-1 |
| chr8_4 | exon | 44712088 | 44712404 | 44712088 | ID=Msa1327390-mRNA-1:exon:12471;Parent=Msa1327390-mRNA-1 |
| chr8_4 | CDS | 44709867 | 44710022 | 44709867 | ID=Msa1327390-mRNA-1:cds;Parent=Msa1327390-mRNA-1 |
| chr8_4 | CDS | 44711052 | 44711107 | 44711052 | ID=Msa1327390-mRNA-1:cds;Parent=Msa1327390-mRNA-1 |
| chr8_4 | CDS | 44712088 | 44712187 | 44712088 | ID=Msa1327390-mRNA-1:cds;Parent=Msa1327390-mRNA-1 |
| chr8_4 | three_prime_UTR | 44712188 | 44712404 | 44712188 | ID=Msa1327390-mRNA-1:three_prime_utr;Parent=Msa1327390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
