Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193000 | sp|Q96453|1433D_SOYBN | 81.423 | 253 | 46 | 1 | 8 | 259 | 7 | 259 | 1.11e-155 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193000 | G7IH96 | 99.240 | 263 | 2 | 0 | 1 | 263 | 1 | 263 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0294390 | Msa1193000 | 0.819659 | 1.033871e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193000 | MtrunA17_Chr2g0316011 | 99.240 | 263 | 2 | 0 | 1 | 263 | 1 | 263 | 0.0 | 538 |
| Msa1193000 | MtrunA17_Chr2g0325591 | 77.692 | 260 | 56 | 2 | 1 | 259 | 1 | 259 | 8.58e-153 | 426 |
| Msa1193000 | MtrunA17_Chr8g0379011 | 82.573 | 241 | 42 | 0 | 3 | 243 | 2 | 242 | 6.83e-152 | 423 |
| Msa1193000 | MtrunA17_Chr2g0283791 | 78.279 | 244 | 51 | 2 | 9 | 251 | 6 | 248 | 7.38e-145 | 406 |
| Msa1193000 | MtrunA17_Chr5g0418971 | 75.519 | 241 | 59 | 0 | 8 | 248 | 7 | 247 | 1.32e-138 | 390 |
| Msa1193000 | MtrunA17_Chr5g0426551 | 66.923 | 260 | 83 | 2 | 1 | 258 | 1 | 259 | 2.00e-125 | 357 |
| Msa1193000 | MtrunA17_Chr3g0132301 | 66.667 | 255 | 83 | 1 | 1 | 253 | 1 | 255 | 3.24e-123 | 351 |
| Msa1193000 | MtrunA17_Chr4g0043141 | 72.034 | 236 | 47 | 1 | 27 | 243 | 1 | 236 | 4.95e-123 | 350 |
| Msa1193000 | MtrunA17_Chr3g0133161 | 65.106 | 235 | 79 | 1 | 8 | 239 | 11 | 245 | 3.30e-110 | 318 |
| Msa1193000 | MtrunA17_Chr1g0164601 | 50.638 | 235 | 108 | 4 | 8 | 238 | 11 | 241 | 1.67e-72 | 222 |
| Msa1193000 | MtrunA17_Chr3g0082111 | 50.213 | 235 | 109 | 4 | 8 | 238 | 41 | 271 | 2.19e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193000 | AT2G42590.2 | 74.409 | 254 | 64 | 1 | 8 | 260 | 7 | 260 | 9.70e-142 | 399 |
| Msa1193000 | AT2G42590.1 | 74.118 | 255 | 64 | 1 | 8 | 260 | 7 | 261 | 4.51e-141 | 397 |
| Msa1193000 | AT2G42590.3 | 74.118 | 255 | 64 | 1 | 8 | 260 | 7 | 261 | 5.14e-141 | 397 |
| Msa1193000 | AT1G26480.1 | 77.542 | 236 | 53 | 0 | 8 | 243 | 10 | 245 | 3.07e-140 | 395 |
| Msa1193000 | AT1G34760.1 | 75.620 | 242 | 59 | 0 | 6 | 247 | 3 | 244 | 1.20e-138 | 390 |
| Msa1193000 | AT1G34760.2 | 75.620 | 242 | 59 | 0 | 6 | 247 | 3 | 244 | 1.62e-138 | 390 |
| Msa1193000 | AT1G22300.1 | 73.622 | 254 | 65 | 2 | 6 | 259 | 3 | 254 | 1.53e-134 | 380 |
| Msa1193000 | AT1G22300.2 | 75.519 | 241 | 59 | 0 | 6 | 246 | 3 | 243 | 1.88e-134 | 380 |
| Msa1193000 | AT1G22300.3 | 76.471 | 238 | 56 | 0 | 6 | 243 | 3 | 240 | 1.18e-133 | 377 |
| Msa1193000 | AT5G38480.1 | 69.291 | 254 | 76 | 2 | 6 | 257 | 2 | 255 | 1.16e-125 | 357 |
| Msa1193000 | AT5G38480.3 | 71.721 | 244 | 67 | 2 | 6 | 247 | 2 | 245 | 1.26e-124 | 355 |
| Msa1193000 | AT5G38480.2 | 71.721 | 244 | 67 | 2 | 6 | 247 | 2 | 245 | 1.26e-124 | 355 |
| Msa1193000 | AT1G78300.1 | 65.490 | 255 | 86 | 2 | 8 | 260 | 5 | 259 | 1.88e-120 | 344 |
| Msa1193000 | AT3G02520.1 | 65.769 | 260 | 84 | 3 | 1 | 258 | 1 | 257 | 4.92e-120 | 343 |
| Msa1193000 | AT3G02520.2 | 65.769 | 260 | 84 | 3 | 1 | 258 | 1 | 257 | 4.92e-120 | 343 |
| Msa1193000 | AT1G35160.1 | 63.359 | 262 | 93 | 2 | 3 | 261 | 6 | 267 | 1.26e-119 | 343 |
| Msa1193000 | AT4G09000.1 | 63.707 | 259 | 92 | 1 | 4 | 260 | 6 | 264 | 1.03e-118 | 340 |
| Msa1193000 | AT1G35160.2 | 66.946 | 239 | 77 | 1 | 3 | 239 | 6 | 244 | 1.41e-117 | 338 |
| Msa1193000 | AT4G09000.2 | 66.807 | 238 | 77 | 1 | 4 | 239 | 6 | 243 | 4.68e-116 | 335 |
| Msa1193000 | AT5G65430.1 | 65.289 | 242 | 81 | 1 | 3 | 241 | 2 | 243 | 1.62e-114 | 329 |
| Msa1193000 | AT5G65430.2 | 65.021 | 243 | 82 | 1 | 3 | 242 | 2 | 244 | 2.12e-114 | 328 |
| Msa1193000 | AT5G16050.1 | 63.462 | 260 | 92 | 2 | 3 | 260 | 2 | 260 | 5.95e-114 | 328 |
| Msa1193000 | AT5G16050.2 | 63.462 | 260 | 92 | 2 | 3 | 260 | 2 | 260 | 5.95e-114 | 328 |
| Msa1193000 | AT5G65430.3 | 65.417 | 240 | 80 | 1 | 3 | 239 | 2 | 241 | 1.63e-113 | 327 |
| Msa1193000 | AT5G10450.1 | 63.223 | 242 | 86 | 1 | 3 | 241 | 2 | 243 | 1.06e-112 | 324 |
| Msa1193000 | AT5G10450.2 | 62.963 | 243 | 87 | 1 | 3 | 242 | 2 | 244 | 1.49e-112 | 324 |
| Msa1193000 | AT5G10450.3 | 63.333 | 240 | 85 | 1 | 3 | 239 | 2 | 241 | 9.79e-112 | 322 |
| Msa1193000 | AT5G10450.4 | 63.333 | 240 | 85 | 1 | 3 | 239 | 2 | 241 | 1.29e-111 | 323 |
| Msa1193000 | AT1G78220.1 | 50.617 | 243 | 116 | 2 | 6 | 247 | 3 | 242 | 1.99e-82 | 248 |
| Msa1193000 | AT1G22290.2 | 48.837 | 215 | 86 | 5 | 6 | 215 | 3 | 198 | 5.92e-56 | 179 |
| Msa1193000 | AT1G22290.1 | 48.585 | 212 | 85 | 5 | 6 | 212 | 3 | 195 | 9.25e-56 | 178 |
Find 78 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGAGACAACCTTACTTTA+TGG | 0.114948 | 8_1:+39107493 | Msa1193000:CDS |
| CCTTGTAAGAATCTTCATTT+AGG | 0.161442 | 8_1:-39107446 | None:intergenic |
| AAATCATGAATGTTATATTT+TGG | 0.227050 | 8_1:-39108529 | None:intergenic |
| AGGTGATTATTATCGGTATT+TGG | 0.228023 | 8_1:+39104428 | Msa1193000:CDS |
| CATATCTTACCACCATCTTC+TGG | 0.252038 | 8_1:-39107528 | None:intergenic |
| ACCTTCAAGAATCCATTTAC+TGG | 0.275962 | 8_1:+39108505 | Msa1193000:three_prime_UTR |
| ATTGAATGTTAAGCGTATTA+AGG | 0.286248 | 8_1:+39104165 | Msa1193000:CDS |
| TTTGAGCAGAGAGAAATTTC+AGG | 0.331959 | 8_1:+39103052 | Msa1193000:five_prime_UTR |
| CACCATTGGTTTGTAATACA+TGG | 0.342646 | 8_1:+39108449 | Msa1193000:three_prime_UTR |
| CGGTCAAGATGAAGATGAAT+TGG | 0.358772 | 8_1:+39108227 | Msa1193000:CDS |
| CTTGTAAGAATCTTCATTTA+GGG | 0.359911 | 8_1:-39107445 | None:intergenic |
| GGCTTGCTTTGCCAGGTGGC+AGG | 0.380270 | 8_1:-39107394 | None:intergenic |
| CATCAAAGGCTTGCTTTGCC+AGG | 0.441295 | 8_1:-39107401 | None:intergenic |
| CATAATGTCATTGCAAATGT+TGG | 0.442212 | 8_1:-39104218 | None:intergenic |
| GAGAGAAACTTGTTCTCTGT+TGG | 0.448642 | 8_1:+39104058 | Msa1193000:CDS |
| TCTGTCACTTAAAGCATATC+AGG | 0.452952 | 8_1:+39104491 | Msa1193000:CDS |
| GAGCAGAAAGAAGAATCAAA+AGG | 0.455348 | 8_1:+39104136 | Msa1193000:CDS |
| TCCAGTAAATGGATTCTTGA+AGG | 0.459852 | 8_1:-39108506 | None:intergenic |
| ATATCTTACCACCATCTTCT+GGG | 0.459971 | 8_1:-39107527 | None:intergenic |
| ACATCCTATCCGATTGGGTC+TGG | 0.460221 | 8_1:+39107245 | Msa1193000:CDS |
| GCAGGAAAGGTGATTATTAT+CGG | 0.460390 | 8_1:+39104421 | Msa1193000:intron |
| TGATGATGGTGTCTCAGAAC+TGG | 0.464411 | 8_1:+39107419 | Msa1193000:CDS |
| AGAGAAACTTGTTCTCTGTT+GGG | 0.468182 | 8_1:+39104059 | Msa1193000:CDS |
| TTCTCCAATGTAGTGAAGCC+TGG | 0.471758 | 8_1:+39108318 | Msa1193000:three_prime_UTR |
| GGTGGAGGCAATGAAGAAAC+TGG | 0.479492 | 8_1:+39104006 | Msa1193000:CDS |
| TGGGTTCTAGAAGAGCTTCA+TGG | 0.491874 | 8_1:+39104095 | Msa1193000:CDS |
| TATCAGAAGTCCATAAAGTA+AGG | 0.493501 | 8_1:-39107503 | None:intergenic |
| AATGAAGAAACTGGCGAAGA+TGG | 0.495701 | 8_1:+39104015 | Msa1193000:CDS |
| CAGAGAGAAATTTCAGGCCA+TGG | 0.502730 | 8_1:+39103058 | Msa1193000:exon |
| TCGCAACAGCTGCATGATCA+AGG | 0.508740 | 8_1:-39107475 | None:intergenic |
| ACCAACACATCCTATCCGAT+TGG | 0.515197 | 8_1:+39107239 | Msa1193000:CDS |
| TAAGGAGTATAGGCAGAAGG+TGG | 0.522406 | 8_1:+39104183 | Msa1193000:CDS |
| TTCACCAGGCTTCACTACAT+TGG | 0.522498 | 8_1:-39108322 | None:intergenic |
| TTGTGTAACAATAACACCAT+TGG | 0.528240 | 8_1:+39108435 | Msa1193000:three_prime_UTR |
| GGTGGATTCAGCAATATTAG+TGG | 0.534314 | 8_1:-39104269 | None:intergenic |
| AGCAGAAAGAAGAATCAAAA+GGG | 0.534447 | 8_1:+39104137 | Msa1193000:CDS |
| GGTCAAGATGAAGATGAATT+GGG | 0.536356 | 8_1:+39108228 | Msa1193000:CDS |
| CCAACACATCCTATCCGATT+GGG | 0.541379 | 8_1:+39107240 | Msa1193000:CDS |
| TTAAGCGTATTAAGGAGTAT+AGG | 0.542232 | 8_1:+39104173 | Msa1193000:CDS |
| AATTTAGAGCCAGACCCAAT+CGG | 0.545062 | 8_1:-39107254 | None:intergenic |
| GAACAAGCTGAACGCTATGA+TGG | 0.545715 | 8_1:+39103131 | Msa1193000:CDS |
| GGAGTATAGGCAGAAGGTGG+AGG | 0.546524 | 8_1:+39104186 | Msa1193000:CDS |
| GACGTTGGTGGAAGAAGCCA+TGG | 0.558760 | 8_1:-39103075 | None:intergenic |
| TATTTGGCGGAATTCAAAGC+TGG | 0.559761 | 8_1:+39104444 | Msa1193000:CDS |
| AGAGAGGAACTGCAAGTGAA+AGG | 0.561346 | 8_1:-39103000 | None:intergenic |
| TTCTGAGACACCATCATCAA+AGG | 0.562143 | 8_1:-39107415 | None:intergenic |
| AAAGTTCTCACGGACGTTGG+TGG | 0.569457 | 8_1:-39103087 | None:intergenic |
| GTATAGGCAGAAGGTGGAGG+CGG | 0.569485 | 8_1:+39104189 | Msa1193000:CDS |
| CCCAATCGGATAGGATGTGT+TGG | 0.570799 | 8_1:-39107240 | None:intergenic |
| CCTAAATGAAGATTCTTACA+AGG | 0.576397 | 8_1:+39107446 | Msa1193000:CDS |
| AATGTGGTGTGCAGAAATGG+TGG | 0.579498 | 8_1:+39103988 | Msa1193000:intron |
| ATCCATGTATTACAAACCAA+TGG | 0.580667 | 8_1:-39108451 | None:intergenic |
| ACTTCTGATATCCCAGAAGA+TGG | 0.590224 | 8_1:+39107516 | Msa1193000:CDS |
| TGATTATTATCGGTATTTGG+CGG | 0.591213 | 8_1:+39104431 | Msa1193000:CDS |
| CGATGAAAAGAAAGAGGTGG+CGG | 0.594656 | 8_1:+39104467 | Msa1193000:CDS |
| GCAAAGCAAGCCTTTGATGA+TGG | 0.597901 | 8_1:+39107405 | Msa1193000:CDS |
| CAAAGGCTTGCTTTGCCAGG+TGG | 0.598428 | 8_1:-39107398 | None:intergenic |
| TGTTGGGTACAAGAATGTGG+TGG | 0.598652 | 8_1:+39104075 | Msa1193000:CDS |
| TTGTAATTCATTCTCAGCAG+TGG | 0.600849 | 8_1:-39107217 | None:intergenic |
| AGCTGGCGATGAAAAGAAAG+AGG | 0.603332 | 8_1:+39104461 | Msa1193000:CDS |
| CTCTGTTGGGTACAAGAATG+TGG | 0.607343 | 8_1:+39104072 | Msa1193000:CDS |
| GATTCAGCAATATTAGTGGA+TGG | 0.608560 | 8_1:-39104265 | None:intergenic |
| AGAGCCAGACCCAATCGGAT+AGG | 0.608618 | 8_1:-39107249 | None:intergenic |
| CAACATAGACAAAGTTCTCA+CGG | 0.612211 | 8_1:-39103097 | None:intergenic |
| TATTAAGGAGTATAGGCAGA+AGG | 0.612763 | 8_1:+39104180 | Msa1193000:CDS |
| GTTGGGTACAAGAATGTGGT+GGG | 0.615161 | 8_1:+39104076 | Msa1193000:CDS |
| AGATAATGAATTCACCTGAA+AGG | 0.617561 | 8_1:+39107295 | Msa1193000:CDS |
| GATGGATGTTGAACTAAGTG+TGG | 0.633294 | 8_1:+39104033 | Msa1193000:CDS |
| GGAACTGCAAGTGAAAGGAA+AGG | 0.647629 | 8_1:-39102995 | None:intergenic |
| ATGGAAAGCGCAACTAAGAG+CGG | 0.655201 | 8_1:+39108207 | Msa1193000:CDS |
| TGATAACTATAACATTGATG+TGG | 0.662452 | 8_1:+39108273 | Msa1193000:three_prime_UTR |
| GACAAAGTTCTCACGGACGT+TGG | 0.666574 | 8_1:-39103090 | None:intergenic |
| TCTGATATCCCAGAAGATGG+TGG | 0.672723 | 8_1:+39107519 | Msa1193000:CDS |
| GTGGTGTGCAGAAATGGTGG+AGG | 0.680954 | 8_1:+39103991 | Msa1193000:intron |
| TGGCGATGAAAAGAAAGAGG+TGG | 0.688230 | 8_1:+39104464 | Msa1193000:CDS |
| ATACATCTTATAATAAAACA+CGG | 0.718122 | 8_1:-39104290 | None:intergenic |
| CATCTTATAATAAAACACGG+TGG | 0.748656 | 8_1:-39104287 | None:intergenic |
| GTTCTAGAAGAGCTTCATGG+AGG | 0.750544 | 8_1:+39104098 | Msa1193000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTCTTAAATTATCA+CGG | - | chr8_1:39103843-39103862 | None:intergenic | 10.0% |
| !!! | CAAAATTTTGAATATTTATA+AGG | - | chr8_1:39106267-39106286 | None:intergenic | 10.0% |
| !!! | TAATTTTTAAGGTAAAAAAT+TGG | - | chr8_1:39106550-39106569 | None:intergenic | 10.0% |
| !! | TTGAAATATATTAAAGAATA+AGG | - | chr8_1:39107103-39107122 | None:intergenic | 10.0% |
| !! | ATATATATATATATGTTCTT+TGG | + | chr8_1:39108139-39108158 | Msa1193000:intron | 10.0% |
| !! | GATAATTTAAGAAAATAAAG+TGG | + | chr8_1:39103844-39103863 | Msa1193000:intron | 15.0% |
| !! | ATACATCTTATAATAAAACA+CGG | - | chr8_1:39104293-39104312 | None:intergenic | 15.0% |
| !! | ACTTATTTAAATTTATCTAC+TGG | - | chr8_1:39104697-39104716 | None:intergenic | 15.0% |
| !!! | TTTTGTATCATAAAATTAGA+TGG | + | chr8_1:39104880-39104899 | Msa1193000:intron | 15.0% |
| !! | TTTGTATCATAAAATTAGAT+GGG | + | chr8_1:39104881-39104900 | Msa1193000:intron | 15.0% |
| !!! | TTTTTTTCTTATACATTAGT+GGG | + | chr8_1:39105058-39105077 | Msa1193000:intron | 15.0% |
| !!! | GTTTAAACCTTTTATATTTA+TGG | + | chr8_1:39105084-39105103 | Msa1193000:intron | 15.0% |
| !! | AAAAATGTATAAGTAAAACT+TGG | + | chr8_1:39105311-39105330 | Msa1193000:intron | 15.0% |
| !!! | ATTATTTGTTGATACAATTA+AGG | + | chr8_1:39105703-39105722 | Msa1193000:intron | 15.0% |
| !! | ACAAAACTGTAAATATTTAT+AGG | + | chr8_1:39106478-39106497 | Msa1193000:intron | 15.0% |
| !! | CAAAACTGTAAATATTTATA+GGG | + | chr8_1:39106479-39106498 | Msa1193000:intron | 15.0% |
| !!! | ACTAATTTTCTTAATCTATA+TGG | + | chr8_1:39106588-39106607 | Msa1193000:intron | 15.0% |
| !!! | CTAATTTTCTTAATCTATAT+GGG | + | chr8_1:39106589-39106608 | Msa1193000:intron | 15.0% |
| !!! | CTTAATAGAATTTATCATTT+TGG | + | chr8_1:39106950-39106969 | Msa1193000:intron | 15.0% |
| !!! | AAATCATGAATGTTATATTT+TGG | - | chr8_1:39108532-39108551 | None:intergenic | 15.0% |
| !!! | AGATACAGTTTTTTAATGTT+TGG | - | chr8_1:39102974-39102993 | None:intergenic | 20.0% |
| !!! | AATTTTTGTCGAAACTAAAT+TGG | + | chr8_1:39103750-39103769 | Msa1193000:intron | 20.0% |
| !!! | ATTTTTGTCGAAACTAAATT+GGG | + | chr8_1:39103751-39103770 | Msa1193000:intron | 20.0% |
| !!! | TTTGTTATTGTGTTAGATTT+TGG | + | chr8_1:39104365-39104384 | Msa1193000:intron | 20.0% |
| !!! | AGTAATTTTGAGTATTTGTT+TGG | + | chr8_1:39104396-39104415 | Msa1193000:intron | 20.0% |
| !! | TCAAAATAGTGTATAGTTTA+TGG | - | chr8_1:39104637-39104656 | None:intergenic | 20.0% |
| !!! | TTAGGCATAAAAAAGTATAA+GGG | - | chr8_1:39104733-39104752 | None:intergenic | 20.0% |
| !!! | ATTAGGCATAAAAAAGTATA+AGG | - | chr8_1:39104734-39104753 | None:intergenic | 20.0% |
| !!! | TTTGTGCACTTTATTTTTAT+AGG | + | chr8_1:39105000-39105019 | Msa1193000:intron | 20.0% |
| !!! | CACTTTATTTTTATAGGATT+TGG | + | chr8_1:39105006-39105025 | Msa1193000:intron | 20.0% |
| !! | CACTAATGTATAAGAAAAAA+AGG | - | chr8_1:39105059-39105078 | None:intergenic | 20.0% |
| !!! | CTTTTTTTCTTATACATTAG+TGG | + | chr8_1:39105057-39105076 | Msa1193000:intron | 20.0% |
| !! | AATTATTCATACCAAAACTA+CGG | - | chr8_1:39105147-39105166 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTTAGATC+TGG | + | chr8_1:39105167-39105186 | Msa1193000:intron | 20.0% |
| !!! | ATAATAATACTGTCATTTCA+TGG | - | chr8_1:39105407-39105426 | None:intergenic | 20.0% |
| !! | TGCTAAAAGATAAACTATTT+AGG | + | chr8_1:39105580-39105599 | Msa1193000:intron | 20.0% |
| !! | ATAATCAAATGAAACATGAA+CGG | - | chr8_1:39105688-39105707 | None:intergenic | 20.0% |
| !!! | TCAACTATCTTTTCATATTA+TGG | - | chr8_1:39105782-39105801 | None:intergenic | 20.0% |
| !!! | TATGAAAAGATAGTTGATAT+AGG | + | chr8_1:39105785-39105804 | Msa1193000:intron | 20.0% |
| !! | TGATAGAGAGATAATTTATA+GGG | + | chr8_1:39105942-39105961 | Msa1193000:intron | 20.0% |
| !! | GAACTATAATGATGATAAAA+TGG | - | chr8_1:39106039-39106058 | None:intergenic | 20.0% |
| !!! | ATGCTGATAGAAATTTTATA+GGG | - | chr8_1:39106327-39106346 | None:intergenic | 20.0% |
| !!! | AATGCTGATAGAAATTTTAT+AGG | - | chr8_1:39106328-39106347 | None:intergenic | 20.0% |
| !!! | AAAATTTCCATCAACATTTT+TGG | + | chr8_1:39106393-39106412 | Msa1193000:intron | 20.0% |
| !!! | ACTAAAAAGTGTATTTTGTA+GGG | + | chr8_1:39106448-39106467 | Msa1193000:intron | 20.0% |
| !! | TAAAAAATTGGCTAAAAGAT+TGG | - | chr8_1:39106538-39106557 | None:intergenic | 20.0% |
| !!! | ATAGAATTTATCATTTTGGT+AGG | + | chr8_1:39106954-39106973 | Msa1193000:intron | 20.0% |
| !! | ATATTTCAACTTAGTATTAG+TGG | + | chr8_1:39107114-39107133 | Msa1193000:intron | 20.0% |
| !! | AGAAAACTTAAAAAATTTCC+AGG | + | chr8_1:39107137-39107156 | Msa1193000:intron | 20.0% |
| !! | AATTACGCAAAATTATGATT+TGG | - | chr8_1:39107363-39107382 | None:intergenic | 20.0% |
| !! | TGTATATGATATGATATTTG+TGG | + | chr8_1:39108036-39108055 | Msa1193000:intron | 20.0% |
| !! | GTATATGATATGATATTTGT+GGG | + | chr8_1:39108037-39108056 | Msa1193000:intron | 20.0% |
| !!! | AGTTGATGTTATATTTTCAA+TGG | - | chr8_1:39108568-39108587 | None:intergenic | 20.0% |
| !! | GAAGTTTTTAACACTGTTTA+TGG | + | chr8_1:39103180-39103199 | Msa1193000:intron | 25.0% |
| ! | ATGAGTAAGAAAGAGAAAAT+GGG | - | chr8_1:39103263-39103282 | None:intergenic | 25.0% |
| ! | AATGAGTAAGAAAGAGAAAA+TGG | - | chr8_1:39103264-39103283 | None:intergenic | 25.0% |
| ! | GTATGTCAAAGTAAAGTAAT+GGG | + | chr8_1:39103373-39103392 | Msa1193000:intron | 25.0% |
| !! | AAGTAAAGTAATGGGATTTA+TGG | + | chr8_1:39103381-39103400 | Msa1193000:intron | 25.0% |
| ! | GTAATTATATGTATCAGTGT+TGG | - | chr8_1:39103454-39103473 | None:intergenic | 25.0% |
| !! | AATTTCTAGAGGACTAAATT+GGG | - | chr8_1:39103587-39103606 | None:intergenic | 25.0% |
| !! | AAATTTCTAGAGGACTAAAT+TGG | - | chr8_1:39103588-39103607 | None:intergenic | 25.0% |
| ! | TATGTTTGGGTCATTATATT+AGG | + | chr8_1:39103694-39103713 | Msa1193000:intron | 25.0% |
| ! | ATGTTTGGGTCATTATATTA+GGG | + | chr8_1:39103695-39103714 | Msa1193000:intron | 25.0% |
| ! | AAAATTGTGAGAGACTAAAT+CGG | + | chr8_1:39103781-39103800 | Msa1193000:intron | 25.0% |
| ! | ACTTTAATGATGTAGTAATG+TGG | + | chr8_1:39103972-39103991 | Msa1193000:intron | 25.0% |
| ! | ATTGAATGTTAAGCGTATTA+AGG | + | chr8_1:39104165-39104184 | Msa1193000:CDS | 25.0% |
| ! | ACAATTTACTTGAAGTAACA+AGG | + | chr8_1:39104519-39104538 | Msa1193000:intron | 25.0% |
| !! | AAAAAGTATAAGGGTCTATT+TGG | - | chr8_1:39104724-39104743 | None:intergenic | 25.0% |
| ! | ACAAAGATAGATGAACTTTA+TGG | + | chr8_1:39104762-39104781 | Msa1193000:intron | 25.0% |
| ! | CATCCTTATTATTTCCATTA+AGG | + | chr8_1:39104912-39104931 | Msa1193000:intron | 25.0% |
| !! | AATCTATGTTTTTCGCTTAA+AGG | + | chr8_1:39105248-39105267 | Msa1193000:intron | 25.0% |
| ! | TTAATGCATAACTAAGTTAC+TGG | - | chr8_1:39105430-39105449 | None:intergenic | 25.0% |
| ! | TTATAGAATTTGACAACTCT+GGG | + | chr8_1:39105652-39105671 | Msa1193000:intron | 25.0% |
| ! | TAGAAAAAATGCATCTGATA+GGG | + | chr8_1:39105904-39105923 | Msa1193000:intron | 25.0% |
| ! | GTGATAGAGAGATAATTTAT+AGG | + | chr8_1:39105941-39105960 | Msa1193000:intron | 25.0% |
| ! | AATACAATAAGCCAAGAAAT+TGG | - | chr8_1:39105998-39106017 | None:intergenic | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | - | chr8_1:39106298-39106317 | None:intergenic | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | - | chr8_1:39106299-39106318 | None:intergenic | 25.0% |
| !! | GCTGATGGAAAAATTTTATA+GGG | - | chr8_1:39106357-39106376 | None:intergenic | 25.0% |
| !! | TGCTGATGGAAAAATTTTAT+AGG | - | chr8_1:39106358-39106377 | None:intergenic | 25.0% |
| !!! | GTTGATGGAAATTTTTTACA+GGG | - | chr8_1:39106388-39106407 | None:intergenic | 25.0% |
| !!! | TGTTGATGGAAATTTTTTAC+AGG | - | chr8_1:39106389-39106408 | None:intergenic | 25.0% |
| !! | CATTTTCCTTAAGCATTTTA+GGG | - | chr8_1:39106420-39106439 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAAGCATTTT+AGG | - | chr8_1:39106421-39106440 | None:intergenic | 25.0% |
| !!! | GACTAAAAAGTGTATTTTGT+AGG | + | chr8_1:39106447-39106466 | Msa1193000:intron | 25.0% |
| !!! | AGATTGGTTTAAAGAATCAA+GGG | - | chr8_1:39106522-39106541 | None:intergenic | 25.0% |
| !!! | AAGATTGGTTTAAAGAATCA+AGG | - | chr8_1:39106523-39106542 | None:intergenic | 25.0% |
| !!! | ATTTTGCGTAATTTGTTTTC+AGG | + | chr8_1:39107370-39107389 | Msa1193000:intron | 25.0% |
| !!! | TTTTGCGTAATTTGTTTTCA+GGG | + | chr8_1:39107371-39107390 | Msa1193000:intron | 25.0% |
| ! | CTTGTAAGAATCTTCATTTA+GGG | - | chr8_1:39107448-39107467 | None:intergenic | 25.0% |
| ! | ATAAGAAGCAACTTAATGTT+GGG | - | chr8_1:39107608-39107627 | None:intergenic | 25.0% |
| ! | AATAAGAAGCAACTTAATGT+TGG | - | chr8_1:39107609-39107628 | None:intergenic | 25.0% |
| !! | AACATTAAGTTGCTTCTTAT+TGG | + | chr8_1:39107608-39107627 | Msa1193000:intron | 25.0% |
| !! | TCTCTATTGTGTATCAATTT+TGG | + | chr8_1:39107710-39107729 | Msa1193000:intron | 25.0% |
| !! | TTGTGTATCAATTTTGGATA+TGG | + | chr8_1:39107716-39107735 | Msa1193000:intron | 25.0% |
| ! | CAAGATTCATCATAATGAAT+AGG | - | chr8_1:39107757-39107776 | None:intergenic | 25.0% |
| ! | CAAAATTGACCAAAAAAAAG+TGG | - | chr8_1:39107841-39107860 | None:intergenic | 25.0% |
| ! | AGTGACAAAAGAAAAATGAT+TGG | - | chr8_1:39107869-39107888 | None:intergenic | 25.0% |
| !! | GAATCTTAATTTGATAACCA+TGG | + | chr8_1:39107996-39108015 | Msa1193000:intron | 25.0% |
| ! | TGATAACTATAACATTGATG+TGG | + | chr8_1:39108273-39108292 | Msa1193000:three_prime_UTR | 25.0% |
| !!! | TTATATTTTGGTCCAGTAAA+TGG | - | chr8_1:39108520-39108539 | None:intergenic | 25.0% |
| AAATGGGTAGTAGTAAAAGT+TGG | - | chr8_1:39103247-39103266 | None:intergenic | 30.0% | |
| GGTATGTCAAAGTAAAGTAA+TGG | + | chr8_1:39103372-39103391 | Msa1193000:intron | 30.0% | |
| TGTTTGGGTCATTATATTAG+GGG | + | chr8_1:39103696-39103715 | Msa1193000:intron | 30.0% | |
| AGCAGAAAGAAGAATCAAAA+GGG | + | chr8_1:39104137-39104156 | Msa1193000:CDS | 30.0% | |
| ! | TTAAGCGTATTAAGGAGTAT+AGG | + | chr8_1:39104173-39104192 | Msa1193000:CDS | 30.0% |
| CATAATGTCATTGCAAATGT+TGG | - | chr8_1:39104221-39104240 | None:intergenic | 30.0% | |
| CATCTTATAATAAAACACGG+TGG | - | chr8_1:39104290-39104309 | None:intergenic | 30.0% | |
| !! | ATTTGATCTTGTTGTTTGTG+AGG | + | chr8_1:39104325-39104344 | Msa1193000:intron | 30.0% |
| AGGTGATTATTATCGGTATT+TGG | + | chr8_1:39104428-39104447 | Msa1193000:CDS | 30.0% | |
| TGATTATTATCGGTATTTGG+CGG | + | chr8_1:39104431-39104450 | Msa1193000:CDS | 30.0% | |
| !! | ACAAAAGCACTTAATTAAGC+TGG | - | chr8_1:39104591-39104610 | None:intergenic | 30.0% |
| TAATGACTGAATCTCTACAT+AGG | + | chr8_1:39104820-39104839 | Msa1193000:intron | 30.0% | |
| GGACCTTAATGGAAATAATA+AGG | - | chr8_1:39104918-39104937 | None:intergenic | 30.0% | |
| AAAAGTTATTCGTACATAGC+AGG | - | chr8_1:39104939-39104958 | None:intergenic | 30.0% | |
| ! | TACGAATAACTTTTATGCCA+TGG | + | chr8_1:39104945-39104964 | Msa1193000:intron | 30.0% |
| GCAGGAACCATAAATATAAA+AGG | - | chr8_1:39105094-39105113 | None:intergenic | 30.0% | |
| ! | AAGATTTATGTCCGTAGTTT+TGG | + | chr8_1:39105133-39105152 | Msa1193000:intron | 30.0% |
| TGTTTAGATCTGGTATGTAA+TGG | + | chr8_1:39105177-39105196 | Msa1193000:intron | 30.0% | |
| AATTGAATTGTGATGTCGTA+TGG | - | chr8_1:39105282-39105301 | None:intergenic | 30.0% | |
| TTGGTATTGCATCAATACTT+TGG | + | chr8_1:39105330-39105349 | Msa1193000:intron | 30.0% | |
| TGATTCTCTGTGTCATATTA+TGG | + | chr8_1:39105457-39105476 | Msa1193000:intron | 30.0% | |
| GAAAATGTGTTGTCAAATAG+CGG | + | chr8_1:39105602-39105621 | Msa1193000:intron | 30.0% | |
| GTTATAGAATTTGACAACTC+TGG | + | chr8_1:39105651-39105670 | Msa1193000:intron | 30.0% | |
| ! | AATACTGAGCTCAATTTTCT+TGG | - | chr8_1:39105850-39105869 | None:intergenic | 30.0% |
| CTAGAAAAAATGCATCTGAT+AGG | + | chr8_1:39105903-39105922 | Msa1193000:intron | 30.0% | |
| CAAGAAATTGGTACCAAATT+GGG | - | chr8_1:39105986-39106005 | None:intergenic | 30.0% | |
| TTGCATGTAAATTCGTTTAC+TGG | + | chr8_1:39106132-39106151 | Msa1193000:intron | 30.0% | |
| ATGTAAATTCGTTTACTGGT+GGG | + | chr8_1:39106136-39106155 | Msa1193000:intron | 30.0% | |
| ! | TCCTAAAAGGTCCATTATTT+TGG | + | chr8_1:39106199-39106218 | Msa1193000:intron | 30.0% |
| !!! | ACCAAAATAATGGACCTTTT+AGG | - | chr8_1:39106203-39106222 | None:intergenic | 30.0% |
| AGCAAACTTGACCAAAATAA+TGG | - | chr8_1:39106213-39106232 | None:intergenic | 30.0% | |
| !! | AAGTTTGCTACTTGATTCTT+GGG | + | chr8_1:39106224-39106243 | Msa1193000:intron | 30.0% |
| ! | GTGAGACTCAGTAATTTTTA+AGG | - | chr8_1:39106561-39106580 | None:intergenic | 30.0% |
| AAAGAAAAAACATGGAAGTG+AGG | - | chr8_1:39106731-39106750 | None:intergenic | 30.0% | |
| AACTTGGGAAAGAAAAAACA+TGG | - | chr8_1:39106739-39106758 | None:intergenic | 30.0% | |
| AGATAATGAATTCACCTGAA+AGG | + | chr8_1:39107295-39107314 | Msa1193000:CDS | 30.0% | |
| CCTTGTAAGAATCTTCATTT+AGG | - | chr8_1:39107449-39107468 | None:intergenic | 30.0% | |
| CCTAAATGAAGATTCTTACA+AGG | + | chr8_1:39107446-39107465 | Msa1193000:CDS | 30.0% | |
| TATCAGAAGTCCATAAAGTA+AGG | - | chr8_1:39107506-39107525 | None:intergenic | 30.0% | |
| GTGGTAAGATATGACTTATA+TGG | + | chr8_1:39107538-39107557 | Msa1193000:intron | 30.0% | |
| CATATAAGATTCTGATAACC+AGG | - | chr8_1:39107641-39107660 | None:intergenic | 30.0% | |
| !! | AATAGAGATTCGTATCGATT+AGG | - | chr8_1:39107698-39107717 | None:intergenic | 30.0% |
| ATTGACCAAAAAAAAGTGGT+TGG | - | chr8_1:39107837-39107856 | None:intergenic | 30.0% | |
| CATAATAACTATTAGCACCA+TGG | - | chr8_1:39108016-39108035 | None:intergenic | 30.0% | |
| AGAAGCTAAGATTGAGTAAT+TGG | - | chr8_1:39108090-39108109 | None:intergenic | 30.0% | |
| ACTCAATCTTAGCTTCTTAT+CGG | + | chr8_1:39108093-39108112 | Msa1193000:intron | 30.0% | |
| TTGTGTAACAATAACACCAT+TGG | + | chr8_1:39108435-39108454 | Msa1193000:three_prime_UTR | 30.0% | |
| ATCCATGTATTACAAACCAA+TGG | - | chr8_1:39108454-39108473 | None:intergenic | 30.0% | |
| TTTGAGCAGAGAGAAATTTC+AGG | + | chr8_1:39103052-39103071 | Msa1193000:five_prime_UTR | 35.0% | |
| CAACATAGACAAAGTTCTCA+CGG | - | chr8_1:39103100-39103119 | None:intergenic | 35.0% | |
| ATTGATCCATTACAAGAGTG+TGG | + | chr8_1:39103350-39103369 | Msa1193000:intron | 35.0% | |
| ! | TTGATCCATTACAAGAGTGT+GGG | + | chr8_1:39103351-39103370 | Msa1193000:intron | 35.0% |
| ! | AGTCCTCTAGAAATTTCTTG+CGG | + | chr8_1:39103592-39103611 | Msa1193000:intron | 35.0% |
| ATATTAGGGGAGCTAATTTC+TGG | + | chr8_1:39103709-39103728 | Msa1193000:intron | 35.0% | |
| TATTAGGGGAGCTAATTTCT+GGG | + | chr8_1:39103710-39103729 | Msa1193000:intron | 35.0% | |
| !!! | CAGTACTTTTTCTGAAGTGA+AGG | - | chr8_1:39103817-39103836 | None:intergenic | 35.0% |
| TCGAATGTAATCACTTGTGT+TGG | + | chr8_1:39103867-39103886 | Msa1193000:intron | 35.0% | |
| ! | AGAGAAACTTGTTCTCTGTT+GGG | + | chr8_1:39104059-39104078 | Msa1193000:CDS | 35.0% |
| GAGCAGAAAGAAGAATCAAA+AGG | + | chr8_1:39104136-39104155 | Msa1193000:CDS | 35.0% | |
| ! | TATTAAGGAGTATAGGCAGA+AGG | + | chr8_1:39104180-39104199 | Msa1193000:CDS | 35.0% |
| GATTCAGCAATATTAGTGGA+TGG | - | chr8_1:39104268-39104287 | None:intergenic | 35.0% | |
| TTGAGTATTTGTTTGGATGC+AGG | + | chr8_1:39104403-39104422 | Msa1193000:intron | 35.0% | |
| TATTTGTTTGGATGCAGGAA+AGG | + | chr8_1:39104408-39104427 | Msa1193000:intron | 35.0% | |
| GCAGGAAAGGTGATTATTAT+CGG | + | chr8_1:39104421-39104440 | Msa1193000:intron | 35.0% | |
| ! | TCTGTCACTTAAAGCATATC+AGG | + | chr8_1:39104491-39104510 | Msa1193000:CDS | 35.0% |
| GGTTATTCAAACATGACCTA+CGG | - | chr8_1:39104570-39104589 | None:intergenic | 35.0% | |
| ! | TTTAAAGCAGTCTCACAACA+AGG | + | chr8_1:39104664-39104683 | Msa1193000:intron | 35.0% |
| TTAAAGCAGTCTCACAACAA+GGG | + | chr8_1:39104665-39104684 | Msa1193000:intron | 35.0% | |
| TATCTTTGTCAGCAGCAATT+AGG | - | chr8_1:39104751-39104770 | None:intergenic | 35.0% | |
| ! | CTTTTATGCCATGGCTTATT+AGG | + | chr8_1:39104954-39104973 | Msa1193000:intron | 35.0% |
| TTCTTAGACCTAATAAGCCA+TGG | - | chr8_1:39104965-39104984 | None:intergenic | 35.0% | |
| CTTAATGATGTTCTCCAACA+AGG | - | chr8_1:39105116-39105135 | None:intergenic | 35.0% | |
| GAAGATGTTTGTTCCTAAGA+GGG | - | chr8_1:39105358-39105377 | None:intergenic | 35.0% | |
| TGAAGATGTTTGTTCCTAAG+AGG | - | chr8_1:39105359-39105378 | None:intergenic | 35.0% | |
| TATGACACAGAGAATCATGA+TGG | - | chr8_1:39105454-39105473 | None:intergenic | 35.0% | |
| TTCTCTGTGTCATATTATGG+AGG | + | chr8_1:39105460-39105479 | Msa1193000:intron | 35.0% | |
| TTAACCTGTTGTAGACGATT+TGG | + | chr8_1:39105485-39105504 | Msa1193000:intron | 35.0% | |
| AAAAAATGCATCTGATAGGG+AGG | + | chr8_1:39105907-39105926 | Msa1193000:intron | 35.0% | |
| CCAAGAAATTGGTACCAAAT+TGG | - | chr8_1:39105987-39106006 | None:intergenic | 35.0% | |
| CCAATTTGGTACCAATTTCT+TGG | + | chr8_1:39105984-39106003 | Msa1193000:intron | 35.0% | |
| AAAATGGTCACTAGCTCAAA+TGG | - | chr8_1:39106023-39106042 | None:intergenic | 35.0% | |
| CATGTAAATTCGTTTACTGG+TGG | + | chr8_1:39106135-39106154 | Msa1193000:intron | 35.0% | |
| ATATCTCACGTGATCCTAAA+AGG | + | chr8_1:39106186-39106205 | Msa1193000:intron | 35.0% | |
| !! | CAAGTTTGCTACTTGATTCT+TGG | + | chr8_1:39106223-39106242 | Msa1193000:intron | 35.0% |
| TTAGGGACCAAAAATGTTGA+TGG | - | chr8_1:39106403-39106422 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr8_1:39106411-39106430 | Msa1193000:intron | 35.0% | |
| ATGCTTAAGGAAAATGTCAC+AGG | + | chr8_1:39106424-39106443 | Msa1193000:intron | 35.0% | |
| TGCTTAAGGAAAATGTCACA+GGG | + | chr8_1:39106425-39106444 | Msa1193000:intron | 35.0% | |
| TCAGTGTTAATTGTGAGTCA+TGG | + | chr8_1:39106839-39106858 | Msa1193000:intron | 35.0% | |
| CAGATCGAAATCTTACTTAG+GGG | - | chr8_1:39107024-39107043 | None:intergenic | 35.0% | |
| CCAGATCGAAATCTTACTTA+GGG | - | chr8_1:39107025-39107044 | None:intergenic | 35.0% | |
| ACCAGATCGAAATCTTACTT+AGG | - | chr8_1:39107026-39107045 | None:intergenic | 35.0% | |
| CAACAGTTGAAATCTTTGTC+TGG | - | chr8_1:39107164-39107183 | None:intergenic | 35.0% | |
| TTGTAATTCATTCTCAGCAG+TGG | - | chr8_1:39107220-39107239 | None:intergenic | 35.0% | |
| ATGAATTCACCTGAAAGGTA+CGG | + | chr8_1:39107300-39107319 | Msa1193000:intron | 35.0% | |
| ATATCTTACCACCATCTTCT+GGG | - | chr8_1:39107530-39107549 | None:intergenic | 35.0% | |
| AATGTTGGGAAAGACATGAT+GGG | - | chr8_1:39107594-39107613 | None:intergenic | 35.0% | |
| TAATGTTGGGAAAGACATGA+TGG | - | chr8_1:39107595-39107614 | None:intergenic | 35.0% | |
| !!! | TGTAGCCAACCACTTTTTTT+TGG | + | chr8_1:39107829-39107848 | Msa1193000:intron | 35.0% |
| ! | AACATAAGTCTTCTGATTCG+CGG | + | chr8_1:39107970-39107989 | Msa1193000:intron | 35.0% |
| TAAGATTGAGTAATTGGTGC+AGG | - | chr8_1:39108084-39108103 | None:intergenic | 35.0% | |
| CTTATCGGATACGATATCTA+TGG | + | chr8_1:39108108-39108127 | Msa1193000:intron | 35.0% | |
| ! | CTTCCAATTTTCCATTTCAG+AGG | + | chr8_1:39108176-39108195 | Msa1193000:intron | 35.0% |
| !!! | CATTTTTTGGTCCTCTGAAA+TGG | - | chr8_1:39108190-39108209 | None:intergenic | 35.0% |
| CATTTCAGAGGACCAAAAAA+TGG | + | chr8_1:39108188-39108207 | Msa1193000:intron | 35.0% | |
| !!! | TAGTTGCGCTTTCCATTTTT+TGG | - | chr8_1:39108203-39108222 | None:intergenic | 35.0% |
| GGTCAAGATGAAGATGAATT+GGG | + | chr8_1:39108228-39108247 | Msa1193000:CDS | 35.0% | |
| GAAGTTGAAAAAAGTTCACC+AGG | - | chr8_1:39108339-39108358 | None:intergenic | 35.0% | |
| !! | CACCATTGGTTTGTAATACA+TGG | + | chr8_1:39108449-39108468 | Msa1193000:three_prime_UTR | 35.0% |
| ACCTTCAAGAATCCATTTAC+TGG | + | chr8_1:39108505-39108524 | Msa1193000:three_prime_UTR | 35.0% | |
| ! | TCCAGTAAATGGATTCTTGA+AGG | - | chr8_1:39108509-39108528 | None:intergenic | 35.0% |
| ACATACCCACACTCTTGTAA+TGG | - | chr8_1:39103359-39103378 | None:intergenic | 40.0% | |
| ! | AACTAGTCTCTACTCTCTTC+CGG | + | chr8_1:39103649-39103668 | Msa1193000:intron | 40.0% |
| ! | CTCTTCCGGTATTTTCATAC+CGG | + | chr8_1:39103663-39103682 | Msa1193000:intron | 40.0% |
| ! | TCTTCCGGTATTTTCATACC+GGG | + | chr8_1:39103664-39103683 | Msa1193000:intron | 40.0% |
| TACCGGGGACAAATTATGTT+TGG | + | chr8_1:39103680-39103699 | Msa1193000:intron | 40.0% | |
| ACCGGGGACAAATTATGTTT+GGG | + | chr8_1:39103681-39103700 | Msa1193000:intron | 40.0% | |
| ! | ACCCAAACATAATTTGTCCC+CGG | - | chr8_1:39103685-39103704 | None:intergenic | 40.0% |
| ATTAGGGGAGCTAATTTCTG+GGG | + | chr8_1:39103711-39103730 | Msa1193000:intron | 40.0% | |
| ! | ACACCTTCAATTCGGAGTTT+TGG | + | chr8_1:39103913-39103932 | Msa1193000:intron | 40.0% |
| ACACCAAAACTCCGAATTGA+AGG | - | chr8_1:39103919-39103938 | None:intergenic | 40.0% | |
| !!! | TCGGAGTTTTGGTGTTACAT+AGG | + | chr8_1:39103924-39103943 | Msa1193000:intron | 40.0% |
| AGTAATGTGGTGTGCAGAAA+TGG | + | chr8_1:39103985-39104004 | Msa1193000:intron | 40.0% | |
| AATGAAGAAACTGGCGAAGA+TGG | + | chr8_1:39104015-39104034 | Msa1193000:CDS | 40.0% | |
| GATGGATGTTGAACTAAGTG+TGG | + | chr8_1:39104033-39104052 | Msa1193000:CDS | 40.0% | |
| ! | GAGAGAAACTTGTTCTCTGT+TGG | + | chr8_1:39104058-39104077 | Msa1193000:CDS | 40.0% |
| ! | GGTGGATTCAGCAATATTAG+TGG | - | chr8_1:39104272-39104291 | None:intergenic | 40.0% |
| TATTTGGCGGAATTCAAAGC+TGG | + | chr8_1:39104444-39104463 | Msa1193000:CDS | 40.0% | |
| ACATAGGCGTGTAACATATC+AGG | + | chr8_1:39104836-39104855 | Msa1193000:intron | 40.0% | |
| ATTTATGGTTCCTGCCTTGT+TGG | + | chr8_1:39105099-39105118 | Msa1193000:intron | 40.0% | |
| GAATTGTGATGTCGTATGGA+AGG | - | chr8_1:39105278-39105297 | None:intergenic | 40.0% | |
| AAATGAAACATGAACGGCCA+AGG | - | chr8_1:39105682-39105701 | None:intergenic | 40.0% | |
| !! | TGCTGAAGTTCTGAAAACAG+AGG | + | chr8_1:39105875-39105894 | Msa1193000:intron | 40.0% |
| !! | GCTGAAGTTCTGAAAACAGA+GGG | + | chr8_1:39105876-39105895 | Msa1193000:intron | 40.0% |
| GTCACAAATCTCTCCCAATT+TGG | + | chr8_1:39105970-39105989 | Msa1193000:intron | 40.0% | |
| ! | TTTTATGACCTTACAGCCAC+TGG | + | chr8_1:39106099-39106118 | Msa1193000:intron | 40.0% |
| TTTATGACCTTACAGCCACT+GGG | + | chr8_1:39106100-39106119 | Msa1193000:intron | 40.0% | |
| TACAGGGACTAAAATGCTGA+TGG | - | chr8_1:39106372-39106391 | None:intergenic | 40.0% | |
| ACACACATACACACATCAAC+TGG | + | chr8_1:39106653-39106672 | Msa1193000:intron | 40.0% | |
| GCACAAGTACAGATGAACTT+GGG | - | chr8_1:39106754-39106773 | None:intergenic | 40.0% | |
| TGCACAAGTACAGATGAACT+TGG | - | chr8_1:39106755-39106774 | None:intergenic | 40.0% | |
| TCTGTACTTGTGCATTCTCA+TGG | + | chr8_1:39106761-39106780 | Msa1193000:intron | 40.0% | |
| CCCTAAGTAAGATTTCGATC+TGG | + | chr8_1:39107022-39107041 | Msa1193000:intron | 40.0% | |
| ! | TTTAAAACCGATGCCAACCA+AGG | - | chr8_1:39107052-39107071 | None:intergenic | 40.0% |
| TTGAAATCTTTGTCTGGACC+TGG | - | chr8_1:39107158-39107177 | None:intergenic | 40.0% | |
| ! | AATTTAGAGCCAGACCCAAT+CGG | - | chr8_1:39107257-39107276 | None:intergenic | 40.0% |
| ! | TGAATTCACCTGAAAGGTAC+GGG | + | chr8_1:39107301-39107320 | Msa1193000:intron | 40.0% |
| GTTTGTGTTAATGAGAACCG+AGG | + | chr8_1:39107331-39107350 | Msa1193000:intron | 40.0% | |
| !! | TTCTGAGACACCATCATCAA+AGG | - | chr8_1:39107418-39107437 | None:intergenic | 40.0% |
| TGCGAGACAACCTTACTTTA+TGG | + | chr8_1:39107493-39107512 | Msa1193000:CDS | 40.0% | |
| ACTTCTGATATCCCAGAAGA+TGG | + | chr8_1:39107516-39107535 | Msa1193000:CDS | 40.0% | |
| CATATCTTACCACCATCTTC+TGG | - | chr8_1:39107531-39107550 | None:intergenic | 40.0% | |
| !! | CTTCTTATTGGTGCTAATCC+TGG | + | chr8_1:39107620-39107639 | Msa1193000:intron | 40.0% |
| !! | GGTCCTCTGAAATGGAAAAT+TGG | - | chr8_1:39108182-39108201 | None:intergenic | 40.0% |
| CGGTCAAGATGAAGATGAAT+TGG | + | chr8_1:39108227-39108246 | Msa1193000:CDS | 40.0% | |
| GGAACTGCAAGTGAAAGGAA+AGG | - | chr8_1:39102998-39103017 | None:intergenic | 45.0% | |
| AGAGAGGAACTGCAAGTGAA+AGG | - | chr8_1:39103003-39103022 | None:intergenic | 45.0% | |
| CAGAGAGAAATTTCAGGCCA+TGG | + | chr8_1:39103058-39103077 | Msa1193000:exon | 45.0% | |
| GAACAAGCTGAACGCTATGA+TGG | + | chr8_1:39103131-39103150 | Msa1193000:CDS | 45.0% | |
| ! | AAGAGTGTGCCTATGAAGCA+CGG | + | chr8_1:39103413-39103432 | Msa1193000:intron | 45.0% |
| TGTCCGTATCCGTGTTTCAT+AGG | + | chr8_1:39103535-39103554 | Msa1193000:intron | 45.0% | |
| CAGCCTATGAAACACGGATA+CGG | - | chr8_1:39103541-39103560 | None:intergenic | 45.0% | |
| CACACACAGCCTATGAAACA+CGG | - | chr8_1:39103547-39103566 | None:intergenic | 45.0% | |
| ! | GAGCCGCAAGAAATTTCTAG+AGG | - | chr8_1:39103598-39103617 | None:intergenic | 45.0% |
| ! | CTTCCGGTATTTTCATACCG+GGG | + | chr8_1:39103665-39103684 | Msa1193000:intron | 45.0% |
| TGTCCCCGGTATGAAAATAC+CGG | - | chr8_1:39103671-39103690 | None:intergenic | 45.0% | |
| ! | TTAGGGGAGCTAATTTCTGG+GGG | + | chr8_1:39103712-39103731 | Msa1193000:intron | 45.0% |
| !! | ACTTGTGTTGGTGTCAGACA+TGG | + | chr8_1:39103879-39103898 | Msa1193000:intron | 45.0% |
| TGTCAGACATGGACATGTGT+CGG | + | chr8_1:39103890-39103909 | Msa1193000:intron | 45.0% | |
| TGTGTCGGACACCTTCAATT+CGG | + | chr8_1:39103905-39103924 | Msa1193000:intron | 45.0% | |
| AATGTGGTGTGCAGAAATGG+TGG | + | chr8_1:39103988-39104007 | Msa1193000:intron | 45.0% | |
| CTCTGTTGGGTACAAGAATG+TGG | + | chr8_1:39104072-39104091 | Msa1193000:CDS | 45.0% | |
| TGTTGGGTACAAGAATGTGG+TGG | + | chr8_1:39104075-39104094 | Msa1193000:CDS | 45.0% | |
| GTTGGGTACAAGAATGTGGT+GGG | + | chr8_1:39104076-39104095 | Msa1193000:CDS | 45.0% | |
| !! | TGGGTTCTAGAAGAGCTTCA+TGG | + | chr8_1:39104095-39104114 | Msa1193000:CDS | 45.0% |
| !! | GTTCTAGAAGAGCTTCATGG+AGG | + | chr8_1:39104098-39104117 | Msa1193000:CDS | 45.0% |
| ! | TAAGGAGTATAGGCAGAAGG+TGG | + | chr8_1:39104183-39104202 | Msa1193000:CDS | 45.0% |
| AGCTGGCGATGAAAAGAAAG+AGG | + | chr8_1:39104461-39104480 | Msa1193000:CDS | 45.0% | |
| TGGCGATGAAAAGAAAGAGG+TGG | + | chr8_1:39104464-39104483 | Msa1193000:CDS | 45.0% | |
| CGATGAAAAGAAAGAGGTGG+CGG | + | chr8_1:39104467-39104486 | Msa1193000:CDS | 45.0% | |
| TCGTAACATGAGTTTGCCGT+AGG | + | chr8_1:39104551-39104570 | Msa1193000:intron | 45.0% | |
| CGTACATAGCAGGACCTTAA+TGG | - | chr8_1:39104929-39104948 | None:intergenic | 45.0% | |
| ATGATGTTCTCCAACAAGGC+AGG | - | chr8_1:39105112-39105131 | None:intergenic | 45.0% | |
| !! | CAATACTTTGGTGCCCTCTT+AGG | + | chr8_1:39105342-39105361 | Msa1193000:intron | 45.0% |
| AGCAGAATAAGCACCATGCA+AGG | + | chr8_1:39105811-39105830 | Msa1193000:intron | 45.0% | |
| AGAATAAGCACCATGCAAGG+AGG | + | chr8_1:39105814-39105833 | Msa1193000:intron | 45.0% | |
| !! | ACCATGCAAGGAGGTATTTG+TGG | + | chr8_1:39105823-39105842 | Msa1193000:intron | 45.0% |
| ACCACAAATACCTCCTTGCA+TGG | - | chr8_1:39105827-39105846 | None:intergenic | 45.0% | |
| !! | AAGTTCTGAAAACAGAGGGC+AGG | + | chr8_1:39105880-39105899 | Msa1193000:intron | 45.0% |
| ATCTGATAGGGAGGAGTTGT+GGG | + | chr8_1:39105916-39105935 | Msa1193000:intron | 45.0% | |
| AAGACTGCGAGTTAGATCGT+AGG | + | chr8_1:39106067-39106086 | Msa1193000:intron | 45.0% | |
| TGCGAGTTAGATCGTAGGAT+TGG | + | chr8_1:39106072-39106091 | Msa1193000:intron | 45.0% | |
| GCTTGCAAGATTGCTGAGAT+CGG | + | chr8_1:39106162-39106181 | Msa1193000:intron | 45.0% | |
| TGCATTCTCATGGCATCTAG+TGG | + | chr8_1:39106771-39106790 | Msa1193000:intron | 45.0% | |
| GCATTCTCATGGCATCTAGT+GGG | + | chr8_1:39106772-39106791 | Msa1193000:intron | 45.0% | |
| CATTCTCATGGCATCTAGTG+GGG | + | chr8_1:39106773-39106792 | Msa1193000:intron | 45.0% | |
| TCAGGAGGTTAGGTGTCAAT+GGG | + | chr8_1:39106816-39106835 | Msa1193000:intron | 45.0% | |
| GATTTCGATCTGGTCAACCT+TGG | + | chr8_1:39107032-39107051 | Msa1193000:intron | 45.0% | |
| ACCAACACATCCTATCCGAT+TGG | + | chr8_1:39107239-39107258 | Msa1193000:CDS | 45.0% | |
| CCAACACATCCTATCCGATT+GGG | + | chr8_1:39107240-39107259 | Msa1193000:CDS | 45.0% | |
| ! | TTATGATTTGGCAGCAGCCT+CGG | - | chr8_1:39107351-39107370 | None:intergenic | 45.0% |
| GCAAAGCAAGCCTTTGATGA+TGG | + | chr8_1:39107405-39107424 | Msa1193000:CDS | 45.0% | |
| !! | TGATGATGGTGTCTCAGAAC+TGG | + | chr8_1:39107419-39107438 | Msa1193000:CDS | 45.0% |
| TCTGATATCCCAGAAGATGG+TGG | + | chr8_1:39107519-39107538 | Msa1193000:CDS | 45.0% | |
| ! | ATGGAAAGCGCAACTAAGAG+CGG | + | chr8_1:39108207-39108226 | Msa1193000:CDS | 45.0% |
| TTCTCCAATGTAGTGAAGCC+TGG | + | chr8_1:39108318-39108337 | Msa1193000:three_prime_UTR | 45.0% | |
| TTCACCAGGCTTCACTACAT+TGG | - | chr8_1:39108325-39108344 | None:intergenic | 45.0% | |
| !! | GTAATTTATTAAAATATATT+GGG | - | chr8_1:39107796-39107815 | None:intergenic | 5.0% |
| !! | AGTAATTTATTAAAATATAT+TGG | - | chr8_1:39107797-39107816 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr8_1:39103017-39103036 | None:intergenic | 50.0% | |
| AAAGTTCTCACGGACGTTGG+TGG | - | chr8_1:39103090-39103109 | None:intergenic | 50.0% | |
| GACAAAGTTCTCACGGACGT+TGG | - | chr8_1:39103093-39103112 | None:intergenic | 50.0% | |
| ! | GTAGAGTGTCCGTGCTTCAT+AGG | - | chr8_1:39103425-39103444 | None:intergenic | 50.0% |
| ACGGACACAAACACTGGACA+CGG | - | chr8_1:39103522-39103541 | None:intergenic | 50.0% | |
| ACGGATACGGACACAAACAC+TGG | - | chr8_1:39103528-39103547 | None:intergenic | 50.0% | |
| GGTGGAGGCAATGAAGAAAC+TGG | + | chr8_1:39104006-39104025 | Msa1193000:CDS | 50.0% | |
| CTGGCCAAATCGTCTACAAC+AGG | - | chr8_1:39105492-39105511 | None:intergenic | 50.0% | |
| CAGCTGTGGTTTGACAACAC+TGG | - | chr8_1:39105511-39105530 | None:intergenic | 50.0% | |
| TTGTCAAACCACAGCTGCAG+CGG | + | chr8_1:39105514-39105533 | Msa1193000:intron | 50.0% | |
| GTTCAAAGTCAGCTGTGCTC+TGG | - | chr8_1:39105550-39105569 | None:intergenic | 50.0% | |
| TCAAATAGCGGCTAATGCGC+CGG | + | chr8_1:39105614-39105633 | Msa1193000:intron | 50.0% | |
| ATAACGCCACAGCACTGTAC+CGG | - | chr8_1:39105636-39105655 | None:intergenic | 50.0% | |
| TGACAACTCTGGGTTTGCCT+TGG | + | chr8_1:39105662-39105681 | Msa1193000:intron | 50.0% | |
| CATCTGATAGGGAGGAGTTG+TGG | + | chr8_1:39105915-39105934 | Msa1193000:intron | 50.0% | |
| ATGCAAGTTAGATCGCCCAG+TGG | - | chr8_1:39106118-39106137 | None:intergenic | 50.0% | |
| TGTGTGTGTGAGAGAGAGAG+AGG | - | chr8_1:39106618-39106637 | None:intergenic | 50.0% | |
| CATGGAAGTGAGGAGCTTGT+TGG | - | chr8_1:39106721-39106740 | None:intergenic | 50.0% | |
| GTCAGGAGGTTAGGTGTCAA+TGG | + | chr8_1:39106815-39106834 | Msa1193000:intron | 50.0% | |
| TCGATCTGGTCAACCTTGGT+TGG | + | chr8_1:39107036-39107055 | Msa1193000:intron | 50.0% | |
| TGGTCAACCTTGGTTGGCAT+CGG | + | chr8_1:39107042-39107061 | Msa1193000:intron | 50.0% | |
| CCCAATCGGATAGGATGTGT+TGG | - | chr8_1:39107243-39107262 | None:intergenic | 50.0% | |
| ACATCCTATCCGATTGGGTC+TGG | + | chr8_1:39107245-39107264 | Msa1193000:CDS | 50.0% | |
| ! | CATTTTCGCCCGTACCTTTC+AGG | - | chr8_1:39107312-39107331 | None:intergenic | 50.0% |
| ! | CATCAAAGGCTTGCTTTGCC+AGG | - | chr8_1:39107404-39107423 | None:intergenic | 50.0% |
| TCGCAACAGCTGCATGATCA+AGG | - | chr8_1:39107478-39107497 | None:intergenic | 50.0% | |
| ! | GACGTTGGTGGAAGAAGCCA+TGG | - | chr8_1:39103078-39103097 | None:intergenic | 55.0% |
| GTGGTGTGCAGAAATGGTGG+AGG | + | chr8_1:39103991-39104010 | Msa1193000:intron | 55.0% | |
| GGAGTATAGGCAGAAGGTGG+AGG | + | chr8_1:39104186-39104205 | Msa1193000:CDS | 55.0% | |
| GTATAGGCAGAAGGTGGAGG+CGG | + | chr8_1:39104189-39104208 | Msa1193000:CDS | 55.0% | |
| TGATAGGGAGGAGTTGTGGG+TGG | + | chr8_1:39105919-39105938 | Msa1193000:intron | 55.0% | |
| TAGATCGCCCAGTGGCTGTA+AGG | - | chr8_1:39106110-39106129 | None:intergenic | 55.0% | |
| AGACTGCAATGCAGCAGCAG+AGG | - | chr8_1:39106692-39106711 | None:intergenic | 55.0% | |
| !! | TGGTAGTGGGTCAGGAGGTT+AGG | + | chr8_1:39106806-39106825 | Msa1193000:intron | 55.0% |
| AGAGCCAGACCCAATCGGAT+AGG | - | chr8_1:39107252-39107271 | None:intergenic | 55.0% | |
| ! | CAAAGGCTTGCTTTGCCAGG+TGG | - | chr8_1:39107401-39107420 | None:intergenic | 55.0% |
| CTATAGCACCGCTGCAGCTG+TGG | - | chr8_1:39105525-39105544 | None:intergenic | 60.0% | |
| ! | AATGCGCCGGTACAGTGCTG+TGG | + | chr8_1:39105627-39105646 | Msa1193000:intron | 60.0% |
| CATGGCATCTAGTGGGGCTG+CGG | + | chr8_1:39106779-39106798 | Msa1193000:intron | 60.0% | |
| !! | GTAGGTGGTAGTGGGTCAGG+AGG | + | chr8_1:39106801-39106820 | Msa1193000:intron | 60.0% |
| !! | TGTTTTCAGGGCCTGCCACC+TGG | + | chr8_1:39107383-39107402 | Msa1193000:intron | 60.0% |
| GCATCTAGTGGGGCTGCGGT+AGG | + | chr8_1:39106783-39106802 | Msa1193000:intron | 65.0% | |
| TCTAGTGGGGCTGCGGTAGG+TGG | + | chr8_1:39106786-39106805 | Msa1193000:intron | 65.0% | |
| GGGCTGCGGTAGGTGGTAGT+GGG | + | chr8_1:39106793-39106812 | Msa1193000:intron | 65.0% | |
| !! | GCGGTAGGTGGTAGTGGGTC+AGG | + | chr8_1:39106798-39106817 | Msa1193000:intron | 65.0% |
| ! | GGCTTGCTTTGCCAGGTGGC+AGG | - | chr8_1:39107397-39107416 | None:intergenic | 65.0% |
| GGGGCTGCGGTAGGTGGTAG+TGG | + | chr8_1:39106792-39106811 | Msa1193000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 39102958 | 39108591 | 39102958 | ID=Msa1193000;Name=Msa1193000 |
| chr8_1 | mRNA | 39102958 | 39108591 | 39102958 | ID=Msa1193000-mRNA-1;Parent=Msa1193000;Name=Msa1193000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119|1|1|1|0.8|0.66|6|334|263 |
| chr8_1 | exon | 39102958 | 39103152 | 39102958 | ID=Msa1193000-mRNA-1:exon:12803;Parent=Msa1193000-mRNA-1 |
| chr8_1 | exon | 39104002 | 39104308 | 39104002 | ID=Msa1193000-mRNA-1:exon:12804;Parent=Msa1193000-mRNA-1 |
| chr8_1 | exon | 39104425 | 39104512 | 39104425 | ID=Msa1193000-mRNA-1:exon:12805;Parent=Msa1193000-mRNA-1 |
| chr8_1 | exon | 39107207 | 39107316 | 39107207 | ID=Msa1193000-mRNA-1:exon:12806;Parent=Msa1193000-mRNA-1 |
| chr8_1 | exon | 39107392 | 39107540 | 39107392 | ID=Msa1193000-mRNA-1:exon:12807;Parent=Msa1193000-mRNA-1 |
| chr8_1 | exon | 39108196 | 39108591 | 39108196 | ID=Msa1193000-mRNA-1:exon:12808;Parent=Msa1193000-mRNA-1 |
| chr8_1 | five_prime_UTR | 39102958 | 39103076 | 39102958 | ID=Msa1193000-mRNA-1:five_prime_utr;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39103077 | 39103152 | 39103077 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39104002 | 39104308 | 39104002 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39104425 | 39104512 | 39104425 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39107207 | 39107316 | 39107207 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39107392 | 39107540 | 39107392 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | CDS | 39108196 | 39108257 | 39108196 | ID=Msa1193000-mRNA-1:cds;Parent=Msa1193000-mRNA-1 |
| chr8_1 | three_prime_UTR | 39108258 | 39108591 | 39108258 | ID=Msa1193000-mRNA-1:three_prime_utr;Parent=Msa1193000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
