AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0294390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294390 MtrunA17_Chr2g0316011 99.160 238 2 0 5 242 26 263 1.65e-177 488
Msa0294390 MtrunA17_Chr2g0325591 77.447 235 52 1 5 238 25 259 1.98e-138 389
Msa0294390 MtrunA17_Chr8g0379011 83.028 218 37 0 5 222 25 242 2.49e-137 385
Msa0294390 MtrunA17_Chr2g0283791 77.974 227 48 2 5 230 23 248 3.59e-133 375
Msa0294390 MtrunA17_Chr5g0418971 75.785 223 54 0 5 227 25 247 5.28e-128 362
Msa0294390 MtrunA17_Chr4g0043141 72.034 236 47 1 6 222 1 236 1.81e-122 348
Msa0294390 MtrunA17_Chr5g0426551 66.809 235 75 2 5 237 26 259 6.91e-112 322
Msa0294390 MtrunA17_Chr3g0132301 66.957 230 74 1 5 232 26 255 2.51e-111 320
Msa0294390 MtrunA17_Chr3g0133161 64.055 217 75 1 5 218 29 245 1.19e-98 288
Msa0294390 MtrunA17_Chr1g0164601 49.309 217 102 4 5 217 29 241 3.19e-63 198
Msa0294390 MtrunA17_Chr3g0082111 48.848 217 103 4 5 217 59 271 3.97e-61 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294390 AT2G42590.2 74.576 236 59 1 5 239 25 260 3.21e-130 369
Msa0294390 AT2G42590.3 74.262 237 59 1 5 239 25 261 1.24e-129 367
Msa0294390 AT2G42590.1 74.262 237 59 1 5 239 25 261 1.26e-129 367
Msa0294390 AT1G34760.2 76.126 222 53 0 5 226 23 244 6.52e-129 365
Msa0294390 AT1G34760.1 76.126 222 53 0 5 226 23 244 8.92e-129 364
Msa0294390 AT1G26480.1 77.064 218 50 0 5 222 28 245 8.76e-128 362
Msa0294390 AT1G22300.2 76.018 221 53 0 5 225 23 243 3.54e-124 353
Msa0294390 AT1G22300.1 73.932 234 59 2 5 238 23 254 3.78e-124 353
Msa0294390 AT1G22300.3 77.064 218 50 0 5 222 23 240 3.11e-123 350
Msa0294390 AT5G38480.1 69.231 234 70 2 5 236 22 255 6.69e-115 329
Msa0294390 AT5G38480.3 71.875 224 61 2 5 226 22 245 5.28e-114 327
Msa0294390 AT5G38480.2 71.875 224 61 2 5 226 22 245 5.28e-114 327
Msa0294390 AT3G02520.1 65.532 235 79 2 5 237 23 257 2.54e-109 315
Msa0294390 AT3G02520.2 65.532 235 79 2 5 237 23 257 2.54e-109 315
Msa0294390 AT1G78300.1 64.135 237 83 2 5 239 23 259 1.33e-108 313
Msa0294390 AT4G09000.1 63.713 237 84 1 5 239 28 264 9.06e-107 309
Msa0294390 AT1G35160.1 62.762 239 86 2 5 240 29 267 1.53e-106 308
Msa0294390 AT1G35160.2 66.667 216 70 1 5 218 29 244 1.58e-104 305
Msa0294390 AT4G09000.2 67.130 216 69 1 5 218 28 243 3.24e-104 305
Msa0294390 AT5G65430.1 65.753 219 72 1 5 220 25 243 3.37e-103 300
Msa0294390 AT5G65430.2 65.455 220 73 1 5 221 25 244 6.07e-103 299
Msa0294390 AT5G16050.1 62.869 237 85 2 5 239 25 260 1.46e-102 298
Msa0294390 AT5G16050.2 62.869 237 85 2 5 239 25 260 1.46e-102 298
Msa0294390 AT5G65430.3 65.899 217 71 1 5 218 25 241 4.37e-102 297
Msa0294390 AT5G10450.1 63.470 219 77 1 5 220 25 243 1.97e-101 295
Msa0294390 AT5G10450.2 63.182 220 78 1 5 221 25 244 2.79e-101 295
Msa0294390 AT5G10450.3 63.594 217 76 1 5 218 25 241 1.24e-100 293
Msa0294390 AT5G10450.4 63.594 217 76 1 5 218 25 241 2.55e-100 293
Msa0294390 AT1G78220.1 50.704 213 104 1 5 216 23 235 3.94e-73 223
Msa0294390 AT1G22290.2 50.785 191 74 4 5 194 27 198 1.97e-52 169
Msa0294390 AT1G22290.1 50.532 188 73 4 5 191 27 195 2.73e-52 168

Find 117 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAGACAACCTTACTTTA+TGG 0.114948 2_3:+46175108 Msa0294390:CDS
CCTTGTAAGAATCTTCATTT+AGG 0.161442 2_3:-46175061 None:intergenic
AAAATTCTAGAGAACTAAAT+TGG 0.173446 2_3:-46171393 None:intergenic
AAGTAAAGTAATGGGATTTA+TGG 0.200846 2_3:+46171188 Msa0294390:five_prime_UTR
AGGAGATTATTATCGGTATT+TGG 0.208721 2_3:+46172246 Msa0294390:CDS
AAATCATGAATGTTATATTT+TGG 0.227050 2_3:-46176222 None:intergenic
AATAAGTAAGAAAGAGAAAA+TGG 0.230863 2_3:-46171070 None:intergenic
GTGTCGAACACCTTCAATTC+AGG 0.269356 2_3:+46171726 Msa0294390:five_prime_UTR
AGAATCTTACCACCATCTTC+TGG 0.285775 2_3:-46175143 None:intergenic
ATTGAATGTTAAGCGTATTA+AGG 0.286248 2_3:+46171984 Msa0294390:CDS
ACCTTCAAGAGTCCATTTAC+TGG 0.306166 2_3:+46176198 Msa0294390:three_prime_UTR
TACCGGGGACAAATTATGTT+TGG 0.321608 2_3:+46171480 Msa0294390:five_prime_UTR
TGTCCGTATCCGTGCTTCAT+AGG 0.340431 2_3:+46171342 Msa0294390:five_prime_UTR
TGTTTGGGTCATTATATTAG+AGG 0.345164 2_3:+46171496 Msa0294390:five_prime_UTR
ATCTTCATCTTGACCGCTCT+TGG 0.357030 2_3:-46175918 None:intergenic
TTACTTTCTTAAATTATTAC+CGG 0.358256 2_3:-46171658 None:intergenic
CGGTCAAGATGAAGATGAAT+TGG 0.358772 2_3:+46175925 Msa0294390:CDS
CTTGTAAGAATCTTCATTTA+GGG 0.359911 2_3:-46175060 None:intergenic
ACACCTTCAATTCAGGGCTT+TGG 0.378954 2_3:+46171733 Msa0294390:five_prime_UTR
GGCTTGCTTTGCCAGGTGGC+AGG 0.380270 2_3:-46175009 None:intergenic
TCAGGGCTTTGGTGTTTCAT+AGG 0.395614 2_3:+46171744 Msa0294390:five_prime_UTR
ATATCTAAACTAGTCTCTTC+CGG 0.403007 2_3:+46171449 Msa0294390:five_prime_UTR
ACCGGGGACAAATTATGTTT+GGG 0.410875 2_3:+46171481 Msa0294390:five_prime_UTR
GTAGAGTGCCCGTGCTTCAT+AGG 0.411223 2_3:-46171229 None:intergenic
ACATACCCACACTCTTGTAA+TGG 0.430575 2_3:-46171163 None:intergenic
TCCAGTAAATGGACTCTTGA+AGG 0.433861 2_3:-46176199 None:intergenic
CATACCCACACTCTTGTAAT+GGG 0.437270 2_3:-46171162 None:intergenic
CATCAAAGGCTTGCTTTGCC+AGG 0.441295 2_3:-46175016 None:intergenic
CATAATGTCATTGCAAATGT+TGG 0.442212 2_3:-46172037 None:intergenic
GAGAGAAACTTGTTCTCTGT+TGG 0.448642 2_3:+46171877 Msa0294390:CDS
TAGAATGTGGTGTGCAGAAA+TGG 0.449705 2_3:+46171804 Msa0294390:exon
TCTGTCACTTAAAGCATATC+AGG 0.452952 2_3:+46172309 Msa0294390:CDS
GAGCAGAAAGAAGAATCAAA+AGG 0.455348 2_3:+46171955 Msa0294390:CDS
ACACCAAAGCCCTGAATTGA+AGG 0.457203 2_3:-46171736 None:intergenic
ACATCCTATCCGATTGGGTC+TGG 0.460221 2_3:+46174860 Msa0294390:CDS
ATAAGTAAGAAAGAGAAAAT+GGG 0.463013 2_3:-46171069 None:intergenic
TGATGATGGTGTCTCAGAAC+TGG 0.464411 2_3:+46175034 Msa0294390:CDS
TAATTATATGTATCAGTGTT+GGG 0.467405 2_3:-46171257 None:intergenic
AGAGAAACTTGTTCTCTGTT+GGG 0.468182 2_3:+46171878 Msa0294390:CDS
GATTCAGCAATATTAGTAGA+TGG 0.470268 2_3:-46172084 None:intergenic
TTCTCCAATGTAGTGAAGCC+TGG 0.471758 2_3:+46176016 Msa0294390:three_prime_UTR
GTAGGAAAGGAGATTATTAT+CGG 0.471770 2_3:+46172239 Msa0294390:intron
GGTGGAGGCAATGAAGAAAC+TGG 0.479492 2_3:+46171825 Msa0294390:CDS
AAATTCTAGAGAACTAAATT+GGG 0.480981 2_3:-46171392 None:intergenic
TATCAGAAGTCCATAAAGTA+AGG 0.486680 2_3:-46175118 None:intergenic
TGGGTTCTAGAAGAGCTTCA+TGG 0.491874 2_3:+46171914 Msa0294390:CDS
AATGAAGAAACTGGCGAAGA+TGG 0.495701 2_3:+46171834 Msa0294390:CDS
CAATGGTTTGTCACACAGAC+AGG 0.502837 2_3:-46176128 None:intergenic
TTAGAGGAATTAATTTCTGA+GGG 0.503188 2_3:+46171512 Msa0294390:five_prime_UTR
TGTCGAACACCTTCAATTCA+GGG 0.503553 2_3:+46171727 Msa0294390:five_prime_UTR
GTATGTGAAAGTAAAGTAAT+GGG 0.507527 2_3:+46171180 Msa0294390:five_prime_UTR
TCGCAACAGCTGCATGATCA+AGG 0.508740 2_3:-46175090 None:intergenic
AGCTGTGTATGTGCCGTGTC+CGG 0.508809 2_3:+46171313 Msa0294390:five_prime_UTR
GTAATTATATGTATCAGTGT+TGG 0.508907 2_3:-46171258 None:intergenic
ACCAACACATCCTATCCGAT+TGG 0.515197 2_3:+46174854 Msa0294390:CDS
TAAGGAGTATAGGCAGAAGG+TGG 0.522406 2_3:+46172002 Msa0294390:CDS
TTCACCAGGCTTCACTACAT+TGG 0.522498 2_3:-46176020 None:intergenic
ATTAGAGGAATTAATTTCTG+AGG 0.530618 2_3:+46171511 Msa0294390:five_prime_UTR
AGCAGAAAGAAGAATCAAAA+GGG 0.534447 2_3:+46171956 Msa0294390:CDS
GGTCAAGATGAAGATGAATT+GGG 0.536356 2_3:+46175926 Msa0294390:CDS
CCAACACATCCTATCCGATT+GGG 0.541379 2_3:+46174855 Msa0294390:CDS
CAGCCTATGAAGCACGGATA+CGG 0.541856 2_3:-46171345 None:intergenic
TTAAGCGTATTAAGGAGTAT+AGG 0.542232 2_3:+46171992 Msa0294390:CDS
AATTTAGAGCCAGACCCAAT+CGG 0.545062 2_3:-46174869 None:intergenic
GAACAAGCTGAACGCTATGA+TGG 0.545101 2_3:+46170936 Msa0294390:five_prime_UTR
GGAGTATAGGCAGAAGGTGG+AGG 0.546524 2_3:+46172005 Msa0294390:CDS
TGTCCCCGGTATGAAAATAC+CGG 0.548133 2_3:-46171468 None:intergenic
ACTTCTGATATTCCAGAAGA+TGG 0.552034 2_3:+46175131 Msa0294390:CDS
GCAGAGAGAAATTTCAGCCA+TGG 0.552274 2_3:+46170863 Msa0294390:five_prime_UTR
TATTTGGCGGAATTCAAAGC+TGG 0.559761 2_3:+46172262 Msa0294390:CDS
TTCTGAGACACCATCATCAA+AGG 0.562143 2_3:-46175030 None:intergenic
AAAGTTCTCACGGACGTTGG+TGG 0.569457 2_3:-46170892 None:intergenic
GTATAGGCAGAAGGTGGAGG+CGG 0.569485 2_3:+46172008 Msa0294390:CDS
GGTATGTGAAAGTAAAGTAA+TGG 0.570656 2_3:+46171179 Msa0294390:five_prime_UTR
CCCAATCGGATAGGATGTGT+TGG 0.570799 2_3:-46174855 None:intergenic
AAATGGGTAGGAGTAAAAGT+TGG 0.573169 2_3:-46171053 None:intergenic
AATCATGTATTACAAACCAA+TGG 0.575699 2_3:-46176145 None:intergenic
CCTAAATGAAGATTCTTACA+AGG 0.576397 2_3:+46175061 Msa0294390:CDS
AATGTGGTGTGCAGAAATGG+TGG 0.577560 2_3:+46171807 Msa0294390:exon
ACGGACAGAAACACCGGACA+CGG 0.578536 2_3:-46171326 None:intergenic
GACGTTGGTGGAAGAAGCCA+TGG 0.579581 2_3:-46170880 None:intergenic
GTAAGAAAGAGAAAATGGGT+AGG 0.582770 2_3:-46171065 None:intergenic
ATTGACCCATTACAAGAGTG+TGG 0.586176 2_3:+46171157 Msa0294390:five_prime_UTR
AAGAGTGTGCCTATGAAGCA+CGG 0.586511 2_3:+46171220 Msa0294390:five_prime_UTR
ATAATTTAAGAAAGTAAATG+TGG 0.589458 2_3:+46171664 Msa0294390:five_prime_UTR
CGATGAAAAGAAAGAGGTGG+CGG 0.594656 2_3:+46172285 Msa0294390:CDS
AGATTATTATCGGTATTTGG+CGG 0.594864 2_3:+46172249 Msa0294390:CDS
ACCCAAACATAATTTGTCCC+CGG 0.597816 2_3:-46171482 None:intergenic
GCAAAGCAAGCCTTTGATGA+TGG 0.597901 2_3:+46175020 Msa0294390:CDS
CAAAGGCTTGCTTTGCCAGG+TGG 0.598428 2_3:-46175013 None:intergenic
TGTTGGGTACAAGAATGTGG+TGG 0.598652 2_3:+46171894 Msa0294390:CDS
TTGTAATTCATTCTCAGCAG+TGG 0.600849 2_3:-46174832 None:intergenic
CTGTCTGTGTGACAAACCAT+TGG 0.603173 2_3:+46176129 Msa0294390:three_prime_UTR
AGCTGGCGATGAAAAGAAAG+AGG 0.603332 2_3:+46172279 Msa0294390:CDS
AATTTGAATGATTTAGAATG+TGG 0.603952 2_3:+46171791 Msa0294390:exon
ACTTGTGTTGGTGTCAGACA+TGG 0.606091 2_3:+46171699 Msa0294390:five_prime_UTR
CTCTGTTGGGTACAAGAATG+TGG 0.607343 2_3:+46171891 Msa0294390:CDS
AGAGCCAGACCCAATCGGAT+AGG 0.608618 2_3:-46174864 None:intergenic
TTGACCCATTACAAGAGTGT+GGG 0.608808 2_3:+46171158 Msa0294390:five_prime_UTR
CAACATAGACAAAGTTCTCA+CGG 0.612211 2_3:-46170902 None:intergenic
TATTAAGGAGTATAGGCAGA+AGG 0.612763 2_3:+46171999 Msa0294390:CDS
GTTGGGTACAAGAATGTGGT+GGG 0.615161 2_3:+46171895 Msa0294390:CDS
AGATAATGAATTCACCTGAA+AGG 0.617561 2_3:+46174910 Msa0294390:CDS
ATGGAAAGCGCAACCAAGAG+CGG 0.619108 2_3:+46175905 Msa0294390:CDS
TCGAATGTAATCACTTGTGT+TGG 0.625212 2_3:+46171687 Msa0294390:five_prime_UTR
AGAGTGTGCCTATGAAGCAC+GGG 0.628813 2_3:+46171221 Msa0294390:five_prime_UTR
ACGGATACGGACAGAAACAC+CGG 0.630666 2_3:-46171332 None:intergenic
GATGGATGTTGAACTAAGTG+TGG 0.633294 2_3:+46171852 Msa0294390:CDS
CAGACACAGCCTATGAAGCA+CGG 0.662791 2_3:-46171351 None:intergenic
GTGGTGTGCAGAAATGGTGG+AGG 0.663377 2_3:+46171810 Msa0294390:CDS
GACAAAGTTCTCACGGACGT+TGG 0.666574 2_3:-46170895 None:intergenic
TCTGATATTCCAGAAGATGG+TGG 0.680888 2_3:+46175134 Msa0294390:CDS
TGGCGATGAAAAGAAAGAGG+TGG 0.688230 2_3:+46172282 Msa0294390:CDS
ATACATCTTATAATAAAACA+CGG 0.718122 2_3:-46172109 None:intergenic
CATCTTATAATAAAACACGG+TGG 0.748656 2_3:-46172106 None:intergenic
GTTCTAGAAGAGCTTCATGG+AGG 0.750544 2_3:+46171917 Msa0294390:CDS
TTATAGTTATCATGACAGAG+CGG 0.791059 2_3:-46175960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACAAAAAAAAAATGTTA+TGG - chr2_3:46173067-46173086 None:intergenic 10.0%
!!! TAATTTTTAAGGTAAAATAT+TGG - chr2_3:46174169-46174188 None:intergenic 10.0%
!! AAATTGACAAAAAAAAAAAA+TGG - chr2_3:46175454-46175473 None:intergenic 10.0%
!! AAACAAAATCAATAAAAATA+TGG - chr2_3:46175600-46175619 None:intergenic 10.0%
!! TTACTTTCTTAAATTATTAC+CGG - chr2_3:46171661-46171680 None:intergenic 15.0%
!! ATAATTTAAGAAAGTAAATG+TGG + chr2_3:46171664-46171683 Msa0294390:five_prime_UTR 15.0%
!! ATACATCTTATAATAAAACA+CGG - chr2_3:46172112-46172131 None:intergenic 15.0%
!!! TTTATTTTTGTGTTAGATTT+TGG + chr2_3:46172184-46172203 Msa0294390:intron 15.0%
!!! TTTTTTTCTTATACATTAGT+GGG + chr2_3:46172894-46172913 Msa0294390:intron 15.0%
!!! AAACTTAATTTGAAACAATT+TGG - chr2_3:46173036-46173055 None:intergenic 15.0%
!! AAAAAAAAATGTTATGGTAT+TGG - chr2_3:46173061-46173080 None:intergenic 15.0%
!!! ATTTTTTTTTTGTTTAGATC+TGG + chr2_3:46173071-46173090 Msa0294390:intron 15.0%
!! AAAAATGTATAAGTAAAACT+TGG + chr2_3:46173215-46173234 Msa0294390:intron 15.0%
!!! ATAATAATATTGTCATTTCA+TGG - chr2_3:46173311-46173330 None:intergenic 15.0%
!!! TTATTTGTTGTATACAATTA+AGG + chr2_3:46173608-46173627 Msa0294390:intron 15.0%
!! TTGAAATATATTGAAGAATA+AGG - chr2_3:46174718-46174737 None:intergenic 15.0%
!! AGTTATTTATATATGTTCTT+TGG + chr2_3:46175837-46175856 Msa0294390:intron 15.0%
!!! AAATCATGAATGTTATATTT+TGG - chr2_3:46176225-46176244 None:intergenic 15.0%
!! ATAAGTAAGAAAGAGAAAAT+GGG - chr2_3:46171072-46171091 None:intergenic 20.0%
!! AATAAGTAAGAAAGAGAAAA+TGG - chr2_3:46171073-46171092 None:intergenic 20.0%
!! TAATTATATGTATCAGTGTT+GGG - chr2_3:46171260-46171279 None:intergenic 20.0%
!!! AAATTCTAGAGAACTAAATT+GGG - chr2_3:46171395-46171414 None:intergenic 20.0%
!!! AAAATTCTAGAGAACTAAAT+TGG - chr2_3:46171396-46171415 None:intergenic 20.0%
!!! ATTTTTTGTCGAAACTAAAT+TGG + chr2_3:46171550-46171569 Msa0294390:five_prime_UTR 20.0%
!!! TTTTTTGTCGAAACTAAATT+GGG + chr2_3:46171551-46171570 Msa0294390:five_prime_UTR 20.0%
!!! AATTTGAATGATTTAGAATG+TGG + chr2_3:46171791-46171810 Msa0294390:exon 20.0%
!! AAGTAATTTGAGTATTTGTT+TGG + chr2_3:46172214-46172233 Msa0294390:intron 20.0%
!! TAACTTATGAAAATAGTGTA+TGG - chr2_3:46172462-46172481 None:intergenic 20.0%
!!! ACTATTTTCATAAGTTATCT+TGG + chr2_3:46172465-46172484 Msa0294390:intron 20.0%
!! ACTTATTTAAATTCATCTAC+TGG - chr2_3:46172559-46172578 None:intergenic 20.0%
!! ATTTGTATCATAAGATTAGA+TGG + chr2_3:46172742-46172761 Msa0294390:intron 20.0%
!! TTTGTATCATAAGATTAGAT+GGG + chr2_3:46172743-46172762 Msa0294390:intron 20.0%
!! CACTAATGTATAAGAAAAAA+AGG - chr2_3:46172895-46172914 None:intergenic 20.0%
!!! CTTTTTTTCTTATACATTAG+TGG + chr2_3:46172893-46172912 Msa0294390:intron 20.0%
!!! ATTTGAAACAATTTGGTAAA+AGG - chr2_3:46173029-46173048 None:intergenic 20.0%
!!! AATCTATGTTTTTCACTTAA+AGG + chr2_3:46173152-46173171 Msa0294390:intron 20.0%
!! TGCTAAAAGATAAACTATTT+AGG + chr2_3:46173484-46173503 Msa0294390:intron 20.0%
!! ATAATCAAATGAAACATGAA+CGG - chr2_3:46173592-46173611 None:intergenic 20.0%
!!! TCAACTATCTTTTCATATTA+TGG - chr2_3:46173687-46173706 None:intergenic 20.0%
!!! TATGAAAAGATAGTTGATAT+AGG + chr2_3:46173690-46173709 Msa0294390:intron 20.0%
!! TGATAGAGAGATAATTTATA+GGG + chr2_3:46173847-46173866 Msa0294390:intron 20.0%
!! GAACTATAATGATGATAAAA+TGG - chr2_3:46173944-46173963 None:intergenic 20.0%
!!! TAAAATATTGGCTAAAAGAT+TGG - chr2_3:46174157-46174176 None:intergenic 20.0%
!!! CTTGATAGAATTTATCATTT+TGG + chr2_3:46174563-46174582 Msa0294390:intron 20.0%
!!! ATAGAATTTATCATTTTGGT+TGG + chr2_3:46174567-46174586 Msa0294390:intron 20.0%
!! ATATTTCAACTTAGTATTAG+TGG + chr2_3:46174729-46174748 Msa0294390:intron 20.0%
!! AATTACACAAAATTACGATT+TGG - chr2_3:46174978-46174997 None:intergenic 20.0%
!!! ATTTTGTGTAATTTGTTTTC+AGG + chr2_3:46174985-46175004 Msa0294390:intron 20.0%
!!! TTTTGTGTAATTTGTTTTCA+GGG + chr2_3:46174986-46175005 Msa0294390:intron 20.0%
!! TGACAAAAAAAAAAAATGGT+TGG - chr2_3:46175450-46175469 None:intergenic 20.0%
!!! GAATCTTAATTTTATAACCA+TGG + chr2_3:46175688-46175707 Msa0294390:intron 20.0%
!! ATATAAATAACTCAAACCAT+AGG - chr2_3:46175829-46175848 None:intergenic 20.0%
!!! AGTTGATGTTATATTTTCAA+TGG - chr2_3:46176261-46176280 None:intergenic 20.0%
! GTATGTGAAAGTAAAGTAAT+GGG + chr2_3:46171180-46171199 Msa0294390:five_prime_UTR 25.0%
!! AAGTAAAGTAATGGGATTTA+TGG + chr2_3:46171188-46171207 Msa0294390:five_prime_UTR 25.0%
! GTAATTATATGTATCAGTGT+TGG - chr2_3:46171261-46171280 None:intergenic 25.0%
! ATTAGAGGAATTAATTTCTG+AGG + chr2_3:46171511-46171530 Msa0294390:five_prime_UTR 25.0%
! TTAGAGGAATTAATTTCTGA+GGG + chr2_3:46171512-46171531 Msa0294390:five_prime_UTR 25.0%
! TAATCACTTCAGAAAAAGTA+CGG + chr2_3:46171612-46171631 Msa0294390:five_prime_UTR 25.0%
! ATTGAATGTTAAGCGTATTA+AGG + chr2_3:46171984-46172003 Msa0294390:CDS 25.0%
!!! ACAAAAGCATTTAATTAAGC+TGG - chr2_3:46172409-46172428 None:intergenic 25.0%
!! TTAGGCATAAGAAAGTATAA+GGG - chr2_3:46172595-46172614 None:intergenic 25.0%
!! TACGAATAACTTTTATGTCA+TGG + chr2_3:46172807-46172826 Msa0294390:intron 25.0%
!! TATAAGAAAAAAAGGTGTAC+TGG - chr2_3:46172887-46172906 None:intergenic 25.0%
! TTAATGCATAACTAAGTTAC+TGG - chr2_3:46173334-46173353 None:intergenic 25.0%
! GAAAAAATGTTGTCAAATAG+CGG + chr2_3:46173506-46173525 Msa0294390:intron 25.0%
! TTATAGAATTTGACAACTCT+GGG + chr2_3:46173556-46173575 Msa0294390:intron 25.0%
! TAGAAAAAATGCATCTGATA+GGG + chr2_3:46173809-46173828 Msa0294390:intron 25.0%
! GTGATAGAGAGATAATTTAT+AGG + chr2_3:46173846-46173865 Msa0294390:intron 25.0%
! TCCTATAAGTTCCATTATAT+TGG + chr2_3:46174111-46174130 Msa0294390:intron 25.0%
!! ACCAATATAATGGAACTTAT+AGG - chr2_3:46174115-46174134 None:intergenic 25.0%
! TCAAAACTTGACCAATATAA+TGG - chr2_3:46174125-46174144 None:intergenic 25.0%
! AGAAAACTTGAAAAATTTCC+AGG + chr2_3:46174752-46174771 Msa0294390:intron 25.0%
! CTTGTAAGAATCTTCATTTA+GGG - chr2_3:46175063-46175082 None:intergenic 25.0%
! ATAAGAAGCAACTTAATGTT+GGG - chr2_3:46175218-46175237 None:intergenic 25.0%
! AATAAGAAGCAACTTAATGT+TGG - chr2_3:46175219-46175238 None:intergenic 25.0%
!! AACATTAAGTTGCTTCTTAT+TGG + chr2_3:46175218-46175237 Msa0294390:intron 25.0%
!! TCTCTATTGTGTATCAATTT+TGG + chr2_3:46175321-46175340 Msa0294390:intron 25.0%
!! TTGTGTATCAATTTTGGATA+TGG + chr2_3:46175327-46175346 Msa0294390:intron 25.0%
! CAAGATTCATCATAATGAAT+AGG - chr2_3:46175368-46175387 None:intergenic 25.0%
!! TCTTAATTTTATAACCATGG+TGG + chr2_3:46175691-46175710 Msa0294390:intron 25.0%
! AATCATGTATTACAAACCAA+TGG - chr2_3:46176148-46176167 None:intergenic 25.0%
!!! TTATATTTTGGTCCAGTAAA+TGG - chr2_3:46176213-46176232 None:intergenic 25.0%
!!! GAAGTTTTGAACAGTGTTTA+TGG + chr2_3:46170989-46171008 Msa0294390:five_prime_UTR 30.0%
GGTATGTGAAAGTAAAGTAA+TGG + chr2_3:46171179-46171198 Msa0294390:five_prime_UTR 30.0%
!!! AGTTCTCTAGAATTTTCTTG+CGG + chr2_3:46171400-46171419 Msa0294390:five_prime_UTR 30.0%
! ATATCTAAACTAGTCTCTTC+CGG + chr2_3:46171449-46171468 Msa0294390:five_prime_UTR 30.0%
TGTTTGGGTCATTATATTAG+AGG + chr2_3:46171496-46171515 Msa0294390:five_prime_UTR 30.0%
AGCAGAAAGAAGAATCAAAA+GGG + chr2_3:46171956-46171975 Msa0294390:CDS 30.0%
! TTAAGCGTATTAAGGAGTAT+AGG + chr2_3:46171992-46172011 Msa0294390:CDS 30.0%
CATAATGTCATTGCAAATGT+TGG - chr2_3:46172040-46172059 None:intergenic 30.0%
GATTCAGCAATATTAGTAGA+TGG - chr2_3:46172087-46172106 None:intergenic 30.0%
CATCTTATAATAAAACACGG+TGG - chr2_3:46172109-46172128 None:intergenic 30.0%
!! ATTTGATCTTGTTGTTTGTG+AGG + chr2_3:46172144-46172163 Msa0294390:intron 30.0%
TTGAGTATTTGTTTGGATGT+AGG + chr2_3:46172221-46172240 Msa0294390:intron 30.0%
TATTTGTTTGGATGTAGGAA+AGG + chr2_3:46172226-46172245 Msa0294390:intron 30.0%
GTAGGAAAGGAGATTATTAT+CGG + chr2_3:46172239-46172258 Msa0294390:intron 30.0%
AGGAGATTATTATCGGTATT+TGG + chr2_3:46172246-46172265 Msa0294390:CDS 30.0%
AGATTATTATCGGTATTTGG+CGG + chr2_3:46172249-46172268 Msa0294390:CDS 30.0%
! AGAAAGTATAAGGGTCTATT+TGG - chr2_3:46172586-46172605 None:intergenic 30.0%
! GTTAGGCATAAGAAAGTATA+AGG - chr2_3:46172596-46172615 None:intergenic 30.0%
ACAAGGATAGATGAACTTTA+TGG + chr2_3:46172624-46172643 Msa0294390:intron 30.0%
AAAAGTTATTCGTACATAGC+AGG - chr2_3:46172801-46172820 None:intergenic 30.0%
! ACTTTTATGTCATGGCTTAT+TGG + chr2_3:46172815-46172834 Msa0294390:intron 30.0%
! CTTTTATGTCATGGCTTATT+GGG + chr2_3:46172816-46172835 Msa0294390:intron 30.0%
GTACTGGAGAGTTTATTAAA+GGG - chr2_3:46172871-46172890 None:intergenic 30.0%
TGTACTGGAGAGTTTATTAA+AGG - chr2_3:46172872-46172891 None:intergenic 30.0%
! GGCAAGAAGCATAAATATAA+AGG - chr2_3:46172930-46172949 None:intergenic 30.0%
! TGGATTTATGTCCATAGTTT+TGG + chr2_3:46172968-46172987 Msa0294390:intron 30.0%
TTAGATTAGCACCAAAACTA+TGG - chr2_3:46172982-46173001 None:intergenic 30.0%
AATTGAATTGTGATGTCGTA+TGG - chr2_3:46173186-46173205 None:intergenic 30.0%
TTGGTATTGCATGAATACTT+TGG + chr2_3:46173234-46173253 Msa0294390:intron 30.0%
TGATTCTCTGTGTCATATTA+TGG + chr2_3:46173361-46173380 Msa0294390:intron 30.0%
GTTATAGAATTTGACAACTC+TGG + chr2_3:46173555-46173574 Msa0294390:intron 30.0%
CTAGAAAAAATGCATCTGAT+AGG + chr2_3:46173808-46173827 Msa0294390:intron 30.0%
AATACAATAAGCCGAGAAAT+TGG - chr2_3:46173903-46173922 None:intergenic 30.0%
ATGTAAATTCGTTTACTGGT+GGG + chr2_3:46174048-46174067 Msa0294390:intron 30.0%
! GTGAGACTGAGTAATTTTTA+AGG - chr2_3:46174180-46174199 None:intergenic 30.0%
AAAGAAAAAACATGAAAGCG+AGG - chr2_3:46174346-46174365 None:intergenic 30.0%
CAGATTGAAATCTTACTTAG+GGG - chr2_3:46174637-46174656 None:intergenic 30.0%
CCAGATTGAAATCTTACTTA+GGG - chr2_3:46174638-46174657 None:intergenic 30.0%
ACCAGATTGAAATCTTACTT+AGG - chr2_3:46174639-46174658 None:intergenic 30.0%
AGATAATGAATTCACCTGAA+AGG + chr2_3:46174910-46174929 Msa0294390:CDS 30.0%
CCTTGTAAGAATCTTCATTT+AGG - chr2_3:46175064-46175083 None:intergenic 30.0%
CCTAAATGAAGATTCTTACA+AGG + chr2_3:46175061-46175080 Msa0294390:CDS 30.0%
TATCAGAAGTCCATAAAGTA+AGG - chr2_3:46175121-46175140 None:intergenic 30.0%
ATGGTGGTAAGATTCTTAAA+CGG + chr2_3:46175150-46175169 Msa0294390:intron 30.0%
!! AATAGAGATTCGTATCGATT+AGG - chr2_3:46175309-46175328 None:intergenic 30.0%
AGTGACAAGAGAAAAATGAT+TGG - chr2_3:46175484-46175503 None:intergenic 30.0%
AACATAAGTCTTCTGATTCA+CGG + chr2_3:46175662-46175681 Msa0294390:intron 30.0%
CATAATAACTATTACCACCA+TGG - chr2_3:46175708-46175727 None:intergenic 30.0%
TTATGTGCATATGACAATTG+TGG + chr2_3:46175723-46175742 Msa0294390:intron 30.0%
TATGTGCATATGACAATTGT+GGG + chr2_3:46175724-46175743 Msa0294390:intron 30.0%
ACTCAATCTTAGCTTCTTAT+TGG + chr2_3:46175780-46175799 Msa0294390:intron 30.0%
! ATCTCAAACTTTTGTTCCTA+TGG + chr2_3:46175810-46175829 Msa0294390:intron 30.0%
TTATAGTTATCATGACAGAG+CGG - chr2_3:46175963-46175982 None:intergenic 30.0%
CAACATAGACAAAGTTCTCA+CGG - chr2_3:46170905-46170924 None:intergenic 35.0%
AAATGGGTAGGAGTAAAAGT+TGG - chr2_3:46171056-46171075 None:intergenic 35.0%
GTAAGAAAGAGAAAATGGGT+AGG - chr2_3:46171068-46171087 None:intergenic 35.0%
! AGTCTCTCACAATTTTCTAG+CGG - chr2_3:46171577-46171596 None:intergenic 35.0%
AATTATTACCGGTGTTTACG+CGG - chr2_3:46171650-46171669 None:intergenic 35.0%
TCGAATGTAATCACTTGTGT+TGG + chr2_3:46171687-46171706 Msa0294390:five_prime_UTR 35.0%
! AGAGAAACTTGTTCTCTGTT+GGG + chr2_3:46171878-46171897 Msa0294390:CDS 35.0%
GAGCAGAAAGAAGAATCAAA+AGG + chr2_3:46171955-46171974 Msa0294390:CDS 35.0%
! TATTAAGGAGTATAGGCAGA+AGG + chr2_3:46171999-46172018 Msa0294390:CDS 35.0%
! TCTGTCACTTAAAGCATATC+AGG + chr2_3:46172309-46172328 Msa0294390:CDS 35.0%
TAATGACTGAATCTCTTCAC+AGG + chr2_3:46172682-46172701 Msa0294390:intron 35.0%
GGATCTTAATGGGGATAATA+AGG - chr2_3:46172780-46172799 None:intergenic 35.0%
TACATAGCAGGATCTTAATG+GGG - chr2_3:46172789-46172808 None:intergenic 35.0%
GTACATAGCAGGATCTTAAT+GGG - chr2_3:46172790-46172809 None:intergenic 35.0%
ATTTATGCTTCTTGCCTTGT+TGG + chr2_3:46172934-46172953 Msa0294390:intron 35.0%
GAAGATGTTTGTTCCTAAGA+GGG - chr2_3:46173262-46173281 None:intergenic 35.0%
TGAAGATGTTTGTTCCTAAG+AGG - chr2_3:46173263-46173282 None:intergenic 35.0%
TATGACACAGAGAATCATGA+TGG - chr2_3:46173358-46173377 None:intergenic 35.0%
TTCTCTGTGTCATATTATGG+AGG + chr2_3:46173364-46173383 Msa0294390:intron 35.0%
TTAACCTGTTGTAGACGATT+TGG + chr2_3:46173389-46173408 Msa0294390:intron 35.0%
GAACTTCAGCAGTAATAACA+CGG - chr2_3:46173771-46173790 None:intergenic 35.0%
GTCACAAATCTTTCCCAATT+TGG + chr2_3:46173875-46173894 Msa0294390:intron 35.0%
CGAGAAATTGGTACCAAATT+GGG - chr2_3:46173891-46173910 None:intergenic 35.0%
CCAATTTGGTACCAATTTCT+CGG + chr2_3:46173889-46173908 Msa0294390:intron 35.0%
AAAATGGTCACTAGTGCAAA+AGG - chr2_3:46173928-46173947 None:intergenic 35.0%
TCGCATGTAAATTCGTTTAC+TGG + chr2_3:46174044-46174063 Msa0294390:intron 35.0%
CATGTAAATTCGTTTACTGG+TGG + chr2_3:46174047-46174066 Msa0294390:intron 35.0%
CCCTAAGTAAGATTTCAATC+TGG + chr2_3:46174635-46174654 Msa0294390:intron 35.0%
! TTTAAAACCTATGCCAACCA+AGG - chr2_3:46174667-46174686 None:intergenic 35.0%
CAACAGTTGAAATCTTTGTC+TGG - chr2_3:46174779-46174798 None:intergenic 35.0%
TTGTAATTCATTCTCAGCAG+TGG - chr2_3:46174835-46174854 None:intergenic 35.0%
ATGAATTCACCTGAAAGGTA+CGG + chr2_3:46174915-46174934 Msa0294390:intron 35.0%
ACTTCTGATATTCCAGAAGA+TGG + chr2_3:46175131-46175150 Msa0294390:CDS 35.0%
!! CTTCTTATTGGTGCTAATCA+TGG + chr2_3:46175230-46175249 Msa0294390:intron 35.0%
AGAAGCTAAGATTGAGTGAT+TGG - chr2_3:46175777-46175796 None:intergenic 35.0%
! CTTCCAATTTTCCATTTCAG+AGG + chr2_3:46175874-46175893 Msa0294390:intron 35.0%
!!! CATTTTTTGGTCCTCTGAAA+TGG - chr2_3:46175888-46175907 None:intergenic 35.0%
CATTTCAGAGGACCAAAAAA+TGG + chr2_3:46175886-46175905 Msa0294390:intron 35.0%
GGTCAAGATGAAGATGAATT+GGG + chr2_3:46175926-46175945 Msa0294390:CDS 35.0%
GAAGTTGAAAAAAGTTCACC+AGG - chr2_3:46176037-46176056 None:intergenic 35.0%
ATTGACCCATTACAAGAGTG+TGG + chr2_3:46171157-46171176 Msa0294390:five_prime_UTR 40.0%
! TTGACCCATTACAAGAGTGT+GGG + chr2_3:46171158-46171177 Msa0294390:five_prime_UTR 40.0%
CATACCCACACTCTTGTAAT+GGG - chr2_3:46171165-46171184 None:intergenic 40.0%
ACATACCCACACTCTTGTAA+TGG - chr2_3:46171166-46171185 None:intergenic 40.0%
! CTCTTCCGGTATTTTCATAC+CGG + chr2_3:46171463-46171482 Msa0294390:five_prime_UTR 40.0%
! TCTTCCGGTATTTTCATACC+GGG + chr2_3:46171464-46171483 Msa0294390:five_prime_UTR 40.0%
TACCGGGGACAAATTATGTT+TGG + chr2_3:46171480-46171499 Msa0294390:five_prime_UTR 40.0%
ACCGGGGACAAATTATGTTT+GGG + chr2_3:46171481-46171500 Msa0294390:five_prime_UTR 40.0%
! ACCCAAACATAATTTGTCCC+CGG - chr2_3:46171485-46171504 None:intergenic 40.0%
TGTCGAACACCTTCAATTCA+GGG + chr2_3:46171727-46171746 Msa0294390:five_prime_UTR 40.0%
TAGAATGTGGTGTGCAGAAA+TGG + chr2_3:46171804-46171823 Msa0294390:exon 40.0%
AATGAAGAAACTGGCGAAGA+TGG + chr2_3:46171834-46171853 Msa0294390:CDS 40.0%
GATGGATGTTGAACTAAGTG+TGG + chr2_3:46171852-46171871 Msa0294390:CDS 40.0%
! GAGAGAAACTTGTTCTCTGT+TGG + chr2_3:46171877-46171896 Msa0294390:CDS 40.0%
TATTTGGCGGAATTCAAAGC+TGG + chr2_3:46172262-46172281 Msa0294390:CDS 40.0%
TCGTAACATGAGTTTGCCTT+AGG + chr2_3:46172369-46172388 Msa0294390:intron 40.0%
AGTTTGCCTTAGGTCATGTT+TGG + chr2_3:46172379-46172398 Msa0294390:intron 40.0%
GGTTATCCAAACATGACCTA+AGG - chr2_3:46172388-46172407 None:intergenic 40.0%
TCCAAAACAGTCTCACAACA+AGG + chr2_3:46172527-46172546 Msa0294390:intron 40.0%
CCAAAACAGTCTCACAACAA+GGG + chr2_3:46172528-46172547 Msa0294390:intron 40.0%
TCACAGGCTTGCAATATATC+AGG + chr2_3:46172698-46172717 Msa0294390:intron 40.0%
CGTACATAGCAGGATCTTAA+TGG - chr2_3:46172791-46172810 None:intergenic 40.0%
CCAAATGAAGTTCTCCAACA+AGG - chr2_3:46172951-46172970 None:intergenic 40.0%
CCTTGTTGGAGAACTTCATT+TGG + chr2_3:46172948-46172967 Msa0294390:intron 40.0%
GAATTGTGATGTCGTATGGA+AGG - chr2_3:46173182-46173201 None:intergenic 40.0%
AAATGAAACATGAACGGCCA+AGG - chr2_3:46173586-46173605 None:intergenic 40.0%
! AACACGGAGCTCAATTTTCT+TGG - chr2_3:46173755-46173774 None:intergenic 40.0%
!! TGCTGAAGTTCTGAAAACAG+AGG + chr2_3:46173780-46173799 Msa0294390:intron 40.0%
!! GCTGAAGTTCTGAAAACAGA+GGG + chr2_3:46173781-46173800 Msa0294390:intron 40.0%
CCGAGAAATTGGTACCAAAT+TGG - chr2_3:46173892-46173911 None:intergenic 40.0%
! TTTTATGACCTTACAGCCAC+TGG + chr2_3:46174011-46174030 Msa0294390:intron 40.0%
TTTATGACCTTACAGCCACT+GGG + chr2_3:46174012-46174031 Msa0294390:intron 40.0%
TGTCTGTTGAAAACCAGTTG+GGG - chr2_3:46174284-46174303 None:intergenic 40.0%
GTGTCTGTTGAAAACCAGTT+GGG - chr2_3:46174285-46174304 None:intergenic 40.0%
GCACAAGTACAGATGAACTT+GGG - chr2_3:46174369-46174388 None:intergenic 40.0%
TGCACAAGTACAGATGAACT+TGG - chr2_3:46174370-46174389 None:intergenic 40.0%
TCTGTACTTGTGCATTCTCA+TGG + chr2_3:46174376-46174395 Msa0294390:intron 40.0%
TCAGTGCTAATTGTGAGTCA+TGG + chr2_3:46174454-46174473 Msa0294390:intron 40.0%
TTGAAATCTTTGTCTGGACC+TGG - chr2_3:46174773-46174792 None:intergenic 40.0%
! AATTTAGAGCCAGACCCAAT+CGG - chr2_3:46174872-46174891 None:intergenic 40.0%
! TGAATTCACCTGAAAGGTAC+GGG + chr2_3:46174916-46174935 Msa0294390:intron 40.0%
GTTTGTGTTAATGAGAACCG+AGG + chr2_3:46174946-46174965 Msa0294390:intron 40.0%
!! TTCTGAGACACCATCATCAA+AGG - chr2_3:46175033-46175052 None:intergenic 40.0%
TGCGAGACAACCTTACTTTA+TGG + chr2_3:46175108-46175127 Msa0294390:CDS 40.0%
TCTGATATTCCAGAAGATGG+TGG + chr2_3:46175134-46175153 Msa0294390:CDS 40.0%
AGAATCTTACCACCATCTTC+TGG - chr2_3:46175146-46175165 None:intergenic 40.0%
!! GGTCCTCTGAAATGGAAAAT+TGG - chr2_3:46175880-46175899 None:intergenic 40.0%
!!! TGGTTGCGCTTTCCATTTTT+TGG - chr2_3:46175901-46175920 None:intergenic 40.0%
CGGTCAAGATGAAGATGAAT+TGG + chr2_3:46175925-46175944 Msa0294390:CDS 40.0%
ACCTTCAAGAGTCCATTTAC+TGG + chr2_3:46176198-46176217 Msa0294390:three_prime_UTR 40.0%
! TCCAGTAAATGGACTCTTGA+AGG - chr2_3:46176202-46176221 None:intergenic 40.0%
GCAGAGAGAAATTTCAGCCA+TGG + chr2_3:46170863-46170882 Msa0294390:five_prime_UTR 45.0%
GAACAAGCTGAACGCTATGA+TGG + chr2_3:46170936-46170955 Msa0294390:five_prime_UTR 45.0%
! AAGAGTGTGCCTATGAAGCA+CGG + chr2_3:46171220-46171239 Msa0294390:five_prime_UTR 45.0%
! CTTCCGGTATTTTCATACCG+GGG + chr2_3:46171465-46171484 Msa0294390:five_prime_UTR 45.0%
TGTCCCCGGTATGAAAATAC+CGG - chr2_3:46171471-46171490 None:intergenic 45.0%
!! ACTTGTGTTGGTGTCAGACA+TGG + chr2_3:46171699-46171718 Msa0294390:five_prime_UTR 45.0%
GTGTCGAACACCTTCAATTC+AGG + chr2_3:46171726-46171745 Msa0294390:five_prime_UTR 45.0%
ACACCTTCAATTCAGGGCTT+TGG + chr2_3:46171733-46171752 Msa0294390:five_prime_UTR 45.0%
ACACCAAAGCCCTGAATTGA+AGG - chr2_3:46171739-46171758 None:intergenic 45.0%
!! TCAGGGCTTTGGTGTTTCAT+AGG + chr2_3:46171744-46171763 Msa0294390:five_prime_UTR 45.0%
AATGTGGTGTGCAGAAATGG+TGG + chr2_3:46171807-46171826 Msa0294390:exon 45.0%
CTCTGTTGGGTACAAGAATG+TGG + chr2_3:46171891-46171910 Msa0294390:CDS 45.0%
TGTTGGGTACAAGAATGTGG+TGG + chr2_3:46171894-46171913 Msa0294390:CDS 45.0%
GTTGGGTACAAGAATGTGGT+GGG + chr2_3:46171895-46171914 Msa0294390:CDS 45.0%
!! TGGGTTCTAGAAGAGCTTCA+TGG + chr2_3:46171914-46171933 Msa0294390:CDS 45.0%
!! GTTCTAGAAGAGCTTCATGG+AGG + chr2_3:46171917-46171936 Msa0294390:CDS 45.0%
! TAAGGAGTATAGGCAGAAGG+TGG + chr2_3:46172002-46172021 Msa0294390:CDS 45.0%
AGCTGGCGATGAAAAGAAAG+AGG + chr2_3:46172279-46172298 Msa0294390:CDS 45.0%
TGGCGATGAAAAGAAAGAGG+TGG + chr2_3:46172282-46172301 Msa0294390:CDS 45.0%
CGATGAAAAGAAAGAGGTGG+CGG + chr2_3:46172285-46172304 Msa0294390:CDS 45.0%
!! CCCTTGTTGTGAGACTGTTT+TGG - chr2_3:46172531-46172550 None:intergenic 45.0%
TCATCTATCCTTGTCAGCAG+CGG - chr2_3:46172618-46172637 None:intergenic 45.0%
!! GAATACTTTGGTGCCCTCTT+AGG + chr2_3:46173246-46173265 Msa0294390:intron 45.0%
AGCAGATTAAGCACCATGCA+AGG + chr2_3:46173716-46173735 Msa0294390:intron 45.0%
AGATTAAGCACCATGCAAGG+AGG + chr2_3:46173719-46173738 Msa0294390:intron 45.0%
!! ACCATGCAAGGAGGTATTTG+TGG + chr2_3:46173728-46173747 Msa0294390:intron 45.0%
ACCACAAATACCTCCTTGCA+TGG - chr2_3:46173732-46173751 None:intergenic 45.0%
!! AAGTTCTGAAAACAGAGGGC+AGG + chr2_3:46173785-46173804 Msa0294390:intron 45.0%
ATCTGATAGGGAGCAGTTCT+GGG + chr2_3:46173821-46173840 Msa0294390:intron 45.0%
CAATCCTACGATCTAACTCG+CGG - chr2_3:46173986-46174005 None:intergenic 45.0%
GCTTGCAAGATTGCTGAGAT+CGG + chr2_3:46174074-46174093 Msa0294390:intron 45.0%
TGTTGAAAACCAGTTGGGGA+GGG - chr2_3:46174280-46174299 None:intergenic 45.0%
GGTGTCTGTTGAAAACCAGT+TGG - chr2_3:46174286-46174305 None:intergenic 45.0%
TGACTGCAATGAAGCAGTAG+AGG - chr2_3:46174307-46174326 None:intergenic 45.0%
TGCATTCTCATGGCATCTAG+TGG + chr2_3:46174386-46174405 Msa0294390:intron 45.0%
GCATTCTCATGGCATCTAGT+GGG + chr2_3:46174387-46174406 Msa0294390:intron 45.0%
CATTCTCATGGCATCTAGTG+GGG + chr2_3:46174388-46174407 Msa0294390:intron 45.0%
TTTCAATCTGGTGACCACCT+TGG + chr2_3:46174647-46174666 Msa0294390:intron 45.0%
AAAACCTATGCCAACCAAGG+TGG - chr2_3:46174664-46174683 None:intergenic 45.0%
ACCAACACATCCTATCCGAT+TGG + chr2_3:46174854-46174873 Msa0294390:CDS 45.0%
CCAACACATCCTATCCGATT+GGG + chr2_3:46174855-46174874 Msa0294390:CDS 45.0%
GCAAAGCAAGCCTTTGATGA+TGG + chr2_3:46175020-46175039 Msa0294390:CDS 45.0%
!! TGATGATGGTGTCTCAGAAC+TGG + chr2_3:46175034-46175053 Msa0294390:CDS 45.0%
CTGATATGTGCATGTGTGTG+CGG - chr2_3:46175179-46175198 None:intergenic 45.0%
ATCTTCATCTTGACCGCTCT+TGG - chr2_3:46175921-46175940 None:intergenic 45.0%
TTCTCCAATGTAGTGAAGCC+TGG + chr2_3:46176016-46176035 Msa0294390:three_prime_UTR 45.0%
TTCACCAGGCTTCACTACAT+TGG - chr2_3:46176023-46176042 None:intergenic 45.0%
! CAATGGTTTGTCACACAGAC+AGG - chr2_3:46176131-46176150 None:intergenic 45.0%
CTGTCTGTGTGACAAACCAT+TGG + chr2_3:46176129-46176148 Msa0294390:three_prime_UTR 45.0%
!!! AATTTATTAAAATAGATTTT+GGG - chr2_3:46175407-46175426 None:intergenic 5.0%
!!! TAATTTATTAAAATAGATTT+TGG - chr2_3:46175408-46175427 None:intergenic 5.0%
AAAGTTCTCACGGACGTTGG+TGG - chr2_3:46170895-46170914 None:intergenic 50.0%
GACAAAGTTCTCACGGACGT+TGG - chr2_3:46170898-46170917 None:intergenic 50.0%
AGAGTGTGCCTATGAAGCAC+GGG + chr2_3:46171221-46171240 Msa0294390:five_prime_UTR 50.0%
ACGGATACGGACAGAAACAC+CGG - chr2_3:46171335-46171354 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr2_3:46171342-46171361 Msa0294390:five_prime_UTR 50.0%
CAGCCTATGAAGCACGGATA+CGG - chr2_3:46171348-46171367 None:intergenic 50.0%
CAGACACAGCCTATGAAGCA+CGG - chr2_3:46171354-46171373 None:intergenic 50.0%
GGTGGAGGCAATGAAGAAAC+TGG + chr2_3:46171825-46171844 Msa0294390:CDS 50.0%
TATCCTTGTCAGCAGCGGTT+AGG - chr2_3:46172613-46172632 None:intergenic 50.0%
GTGGCCAAATCGTCTACAAC+AGG - chr2_3:46173396-46173415 None:intergenic 50.0%
GTTCAAAGTCAGCTGTGCTC+TGG - chr2_3:46173454-46173473 None:intergenic 50.0%
TCAAATAGCGGCTAATGCGC+CGG + chr2_3:46173518-46173537 Msa0294390:intron 50.0%
ATAACGCCACAGCACTGTAC+CGG - chr2_3:46173540-46173559 None:intergenic 50.0%
TGACAACTCTGGGTTTGCCT+TGG + chr2_3:46173566-46173585 Msa0294390:intron 50.0%
CATCTGATAGGGAGCAGTTC+TGG + chr2_3:46173820-46173839 Msa0294390:intron 50.0%
AAGACCGCGAGTTAGATCGT+AGG + chr2_3:46173979-46173998 Msa0294390:intron 50.0%
CGCGAGTTAGATCGTAGGAT+TGG + chr2_3:46173984-46174003 Msa0294390:intron 50.0%
CTGTTGAAAACCAGTTGGGG+AGG - chr2_3:46174281-46174300 None:intergenic 50.0%
CATGAAAGCGAGGAGCTTGT+TGG - chr2_3:46174336-46174355 None:intergenic 50.0%
TCAGGGGGTTAGGTGTCAAT+GGG + chr2_3:46174431-46174450 Msa0294390:intron 50.0%
AATCTGGTGACCACCTTGGT+TGG + chr2_3:46174651-46174670 Msa0294390:intron 50.0%
CCCAATCGGATAGGATGTGT+TGG - chr2_3:46174858-46174877 None:intergenic 50.0%
ACATCCTATCCGATTGGGTC+TGG + chr2_3:46174860-46174879 Msa0294390:CDS 50.0%
! CATTTTCGCCCGTACCTTTC+AGG - chr2_3:46174927-46174946 None:intergenic 50.0%
! TTACGATTTGGCAGCAGCCT+CGG - chr2_3:46174966-46174985 None:intergenic 50.0%
! CATCAAAGGCTTGCTTTGCC+AGG - chr2_3:46175019-46175038 None:intergenic 50.0%
TCGCAACAGCTGCATGATCA+AGG - chr2_3:46175093-46175112 None:intergenic 50.0%
! ATGGAAAGCGCAACCAAGAG+CGG + chr2_3:46175905-46175924 Msa0294390:CDS 50.0%
! GACGTTGGTGGAAGAAGCCA+TGG - chr2_3:46170883-46170902 None:intergenic 55.0%
! GTAGAGTGCCCGTGCTTCAT+AGG - chr2_3:46171232-46171251 None:intergenic 55.0%
AGCTGTGTATGTGCCGTGTC+CGG + chr2_3:46171313-46171332 Msa0294390:five_prime_UTR 55.0%
ACGGACAGAAACACCGGACA+CGG - chr2_3:46171329-46171348 None:intergenic 55.0%
CATCACTGCCGCGTAAACAC+CGG + chr2_3:46171639-46171658 Msa0294390:intron 55.0%
GTGGTGTGCAGAAATGGTGG+AGG + chr2_3:46171810-46171829 Msa0294390:CDS 55.0%
GGAGTATAGGCAGAAGGTGG+AGG + chr2_3:46172005-46172024 Msa0294390:CDS 55.0%
GTATAGGCAGAAGGTGGAGG+CGG + chr2_3:46172008-46172027 Msa0294390:CDS 55.0%
ATGCCTAACCGCTGCTGACA+AGG + chr2_3:46172607-46172626 Msa0294390:intron 55.0%
CAGCTGCGGTTTGACAACAG+TGG - chr2_3:46173415-46173434 None:intergenic 55.0%
TTGTCAAACCGCAGCTGCAG+CGG + chr2_3:46173418-46173437 Msa0294390:intron 55.0%
!! TGATAGGGAGCAGTTCTGGG+TGG + chr2_3:46173824-46173843 Msa0294390:intron 55.0%
TAGATCGCCCAGTGGCTGTA+AGG - chr2_3:46174022-46174041 None:intergenic 55.0%
ATGCGAGTTAGATCGCCCAG+TGG - chr2_3:46174030-46174049 None:intergenic 55.0%
GAAAACCAGTTGGGGAGGGA+GGG - chr2_3:46174276-46174295 None:intergenic 55.0%
TGAAAACCAGTTGGGGAGGG+AGG - chr2_3:46174277-46174296 None:intergenic 55.0%
CATGGCATCTAGTGGGGTTG+CGG + chr2_3:46174394-46174413 Msa0294390:intron 55.0%
GTCAGGGGGTTAGGTGTCAA+TGG + chr2_3:46174430-46174449 Msa0294390:intron 55.0%
GTGACCACCTTGGTTGGCAT+AGG + chr2_3:46174657-46174676 Msa0294390:intron 55.0%
AGAGCCAGACCCAATCGGAT+AGG - chr2_3:46174867-46174886 None:intergenic 55.0%
! CAAAGGCTTGCTTTGCCAGG+TGG - chr2_3:46175016-46175035 None:intergenic 55.0%
CTATAGCACCGCTGCAGCTG+CGG - chr2_3:46173429-46173448 None:intergenic 60.0%
! AATGCGCCGGTACAGTGCTG+TGG + chr2_3:46173531-46173550 Msa0294390:intron 60.0%
GCATCTAGTGGGGTTGCGGT+AGG + chr2_3:46174398-46174417 Msa0294390:intron 60.0%
TCTAGTGGGGTTGCGGTAGG+TGG + chr2_3:46174401-46174420 Msa0294390:intron 60.0%
GGGTTGCGGTAGGTGGTAGT+GGG + chr2_3:46174408-46174427 Msa0294390:intron 60.0%
!! CGGTAGGTGGTAGTGGGTCA+GGG + chr2_3:46174414-46174433 Msa0294390:intron 60.0%
!! GGTAGGTGGTAGTGGGTCAG+GGG + chr2_3:46174415-46174434 Msa0294390:intron 60.0%
!! GTAGGTGGTAGTGGGTCAGG+GGG + chr2_3:46174416-46174435 Msa0294390:intron 60.0%
!! TGGTAGTGGGTCAGGGGGTT+AGG + chr2_3:46174421-46174440 Msa0294390:intron 60.0%
!! TGTTTTCAGGGCCTGCCACC+TGG + chr2_3:46174998-46175017 Msa0294390:intron 60.0%
ACCAGTTGGGGAGGGAGGGA+GGG - chr2_3:46174272-46174291 None:intergenic 65.0%
AACCAGTTGGGGAGGGAGGG+AGG - chr2_3:46174273-46174292 None:intergenic 65.0%
GGGGTTGCGGTAGGTGGTAG+TGG + chr2_3:46174407-46174426 Msa0294390:intron 65.0%
!! GCGGTAGGTGGTAGTGGGTC+AGG + chr2_3:46174413-46174432 Msa0294390:intron 65.0%
! GGCTTGCTTTGCCAGGTGGC+AGG - chr2_3:46175012-46175031 None:intergenic 65.0%
GAGGGAGGGAGGGAGGGAGA+GGG - chr2_3:46174239-46174258 None:intergenic 70.0%
TTGGGGAGGGAGGGAGGGAG+GGG - chr2_3:46174267-46174286 None:intergenic 70.0%
GTTGGGGAGGGAGGGAGGGA+GGG - chr2_3:46174268-46174287 None:intergenic 70.0%
AGTTGGGGAGGGAGGGAGGG+AGG - chr2_3:46174269-46174288 None:intergenic 70.0%
TCCCTCCCTCCCTCCCCAAC+TGG + chr2_3:46174268-46174287 Msa0294390:intron 70.0%
GGAGGGAGGGAGGGAGGGAG+AGG - chr2_3:46174240-46174259 None:intergenic 75.0%
GGGAGGGAGGGAGGGAGGGA+GGG - chr2_3:46174241-46174260 None:intergenic 75.0%
AGGGGGGAGGGAGGGAGGGA+GGG - chr2_3:46174249-46174268 None:intergenic 75.0%
AGGGAGGGGGGAGGGAGGGA+GGG - chr2_3:46174253-46174272 None:intergenic 75.0%
AGGGAGGGAGGGGGGAGGGA+GGG - chr2_3:46174257-46174276 None:intergenic 75.0%
AGGGAGGGAGGGAGGGGGGA+GGG - chr2_3:46174261-46174280 None:intergenic 75.0%
TGGGGAGGGAGGGAGGGAGG+GGG - chr2_3:46174266-46174285 None:intergenic 75.0%
! GGGGAGGGAGGGAGGGAGGG+AGG - chr2_3:46174246-46174265 None:intergenic 80.0%
! GAGGGGGGAGGGAGGGAGGG+AGG - chr2_3:46174250-46174269 None:intergenic 80.0%
! GAGGGAGGGGGGAGGGAGGG+AGG - chr2_3:46174254-46174273 None:intergenic 80.0%
! GAGGGAGGGAGGGGGGAGGG+AGG - chr2_3:46174258-46174277 None:intergenic 80.0%
! GAGGGAGGGAGGGAGGGGGG+AGG - chr2_3:46174262-46174281 None:intergenic 80.0%
! GGGGAGGGAGGGAGGGAGGG+GGG - chr2_3:46174246-46174265 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 46170823 46176284 46170823 ID=Msa0294390;Name=Msa0294390
chr2_3 mRNA 46170823 46176284 46170823 ID=Msa0294390-mRNA-1;Parent=Msa0294390;Name=Msa0294390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=965|1|1|1|0.8|0.66|6|329|242
chr2_3 exon 46170823 46171634 46170823 ID=Msa0294390-mRNA-1:exon:14412;Parent=Msa0294390-mRNA-1
chr2_3 exon 46171655 46172127 46171655 ID=Msa0294390-mRNA-1:exon:14413;Parent=Msa0294390-mRNA-1
chr2_3 exon 46172243 46172330 46172243 ID=Msa0294390-mRNA-1:exon:14414;Parent=Msa0294390-mRNA-1
chr2_3 exon 46174822 46174931 46174822 ID=Msa0294390-mRNA-1:exon:14415;Parent=Msa0294390-mRNA-1
chr2_3 exon 46175007 46175155 46175007 ID=Msa0294390-mRNA-1:exon:14416;Parent=Msa0294390-mRNA-1
chr2_3 exon 46175894 46176284 46175894 ID=Msa0294390-mRNA-1:exon:14417;Parent=Msa0294390-mRNA-1
chr2_3 five_prime_UTR 46170823 46171634 46170823 ID=Msa0294390-mRNA-1:five_prime_utr;Parent=Msa0294390-mRNA-1
chr2_3 five_prime_UTR 46171655 46171807 46171655 ID=Msa0294390-mRNA-1:five_prime_utr;Parent=Msa0294390-mRNA-1
chr2_3 CDS 46171808 46172127 46171808 ID=Msa0294390-mRNA-1:cds;Parent=Msa0294390-mRNA-1
chr2_3 CDS 46172243 46172330 46172243 ID=Msa0294390-mRNA-1:cds;Parent=Msa0294390-mRNA-1
chr2_3 CDS 46174822 46174931 46174822 ID=Msa0294390-mRNA-1:cds;Parent=Msa0294390-mRNA-1
chr2_3 CDS 46175007 46175155 46175007 ID=Msa0294390-mRNA-1:cds;Parent=Msa0294390-mRNA-1
chr2_3 CDS 46175894 46175955 46175894 ID=Msa0294390-mRNA-1:cds;Parent=Msa0294390-mRNA-1
chr2_3 three_prime_UTR 46175956 46176284 46175956 ID=Msa0294390-mRNA-1:three_prime_utr;Parent=Msa0294390-mRNA-1
Gene Sequence

>Msa0294390

ATGTGGTGTGCAGAAATGGTGGAGGCAATGAAGAAACTGGCGAAGATGGATGTTGAACTAAGTGTGGAAGAGAGAAACTTGTTCTCTGTTGGGTACAAGAATGTGGTGGGTTCTAGAAGAGCTTCATGGAGGATCTTATCATCAATTGAGCAGAAAGAAGAATCAAAAGGGAATGAATTGAATGTTAAGCGTATTAAGGAGTATAGGCAGAAGGTGGAGGCGGAGCTTTCCAACATTTGCAATGACATTATGATTATTATTGATGAGCATCTTATTCCATCTACTAATATTGCTGAATCCACCGTGTTTTATTATAAGATGAAAGGAGATTATTATCGGTATTTGGCGGAATTCAAAGCTGGCGATGAAAAGAAAGAGGTGGCGGATCTGTCACTTAAAGCATATCAGACAGCTTCTGCCACTGCTGAGAATGAATTACAACCAACACATCCTATCCGATTGGGTCTGGCTCTAAATTTCTCAGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCACCTGGCAAAGCAAGCCTTTGATGATGGTGTCTCAGAACTGGATACCCTAAATGAAGATTCTTACAAGGACAGTACCTTGATCATGCAGCTGTTGCGAGACAACCTTACTTTATGGACTTCTGATATTCCAGAAGATGGTGAGGACCAAAAAATGGAAAGCGCAACCAAGAGCGGTCAAGATGAAGATGAATTGGGTCGCTAA
Protein sequence

>Msa0294390

MWCAEMVEAMKKLAKMDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELNVKRIKEYRQKVEAELSNICNDIMIIIDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGDEKKEVADLSLKAYQTASATAENELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDGVSELDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMESATKSGQDEDELGR*