AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193210 MtrunA17_Chr8g0366291 96.508 315 11 0 1 315 1 315 0.0 624
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193210 AT5G46850.3 43.233 266 134 7 55 315 46 299 7.68e-62 199
Msa1193210 AT5G46850.1 43.233 266 134 7 55 315 43 296 1.51e-61 198
Msa1193210 AT5G46850.2 43.233 266 134 7 55 315 72 325 1.93e-61 198

Find 69 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCCTCAGGTTGTTCAATT+AGG 0.247839 8_1:+39412098 Msa1193210:five_prime_UTR
ACAATCTTAACATGGAATTA+TGG 0.250061 8_1:-39415076 None:intergenic
GTTGGCTGTAGTAATGTATT+TGG 0.259385 8_1:-39415506 None:intergenic
CTCTGCATCTATTTGTTTGC+CGG 0.268753 8_1:+39412406 Msa1193210:CDS
TATTTGGATCAACATCTAAA+TGG 0.285963 8_1:-39415490 None:intergenic
CCATCTAAGATGCAGATTAT+AGG 0.288491 8_1:+39412278 Msa1193210:five_prime_UTR
GGCTACTCGATAGTTGAATT+TGG 0.307122 8_1:+39415831 Msa1193210:CDS
TCATTTCTGCTATTAGAGAT+AGG 0.316036 8_1:-39414918 None:intergenic
CTGCTATTAGAGATAGGGTT+TGG 0.317112 8_1:-39414912 None:intergenic
TGGTCTGTGTGAAGCGCTTC+CGG 0.320951 8_1:+39415049 Msa1193210:CDS
TGCTATTAGAGATAGGGTTT+GGG 0.336084 8_1:-39414911 None:intergenic
GTTATTGAAAGATTGCCTTC+TGG 0.349209 8_1:+39415221 Msa1193210:CDS
TCTGTTGGTGATTTAGAATC+AGG 0.356919 8_1:+39412460 Msa1193210:CDS
CCTATAATCTGCATCTTAGA+TGG 0.367776 8_1:-39412278 None:intergenic
CTTCAGTGGTTCTACGCATT+CGG 0.388489 8_1:+39416134 Msa1193210:three_prime_UTR
TTGCCGGGAGTTCATTTATA+TGG 0.391574 8_1:+39412422 Msa1193210:CDS
TGCATCAGATATTGCTTTGT+CGG 0.400370 8_1:-39414954 None:intergenic
TCACCAACAGAACAATTTCC+AGG 0.404333 8_1:-39412448 None:intergenic
GTGGATGTTGATGTGTAATA+AGG 0.414693 8_1:-39412129 None:intergenic
TGTATGATGCCGGTCTTGTT+TGG 0.422508 8_1:+39415943 Msa1193210:CDS
ATGTCTCAAGAAGTCACTTC+TGG 0.424065 8_1:+39415029 Msa1193210:CDS
GCAAGATGTTGTAATTCAAA+TGG 0.425864 8_1:-39415257 None:intergenic
GTTGTAAGACGTGATCTTGT+TGG 0.444614 8_1:+39415101 Msa1193210:CDS
GTTATCAACTCTTGTAATTG+TGG 0.457283 8_1:+39416031 Msa1193210:CDS
CATTTCTGCTATTAGAGATA+GGG 0.464396 8_1:-39414917 None:intergenic
AAATACATTAATATTCATCC+TGG 0.476321 8_1:-39412238 None:intergenic
TCTGCATCTATTTGTTTGCC+GGG 0.478058 8_1:+39412407 Msa1193210:CDS
TTGAATGATATAGCTGTGTT+TGG 0.479484 8_1:+39415413 Msa1193210:CDS
TCGCTGCAGCACAAAGGAAA+AGG 0.495565 8_1:+39415872 Msa1193210:CDS
TTGCAGCCTCTGAATGAAAG+TGG 0.503544 8_1:+39415810 Msa1193210:intron
TACAAGGAAAAGTTAGATCA+TGG 0.509890 8_1:-39412065 None:intergenic
GAGAATACCATCGGGAAGAA+AGG 0.515375 8_1:+39415965 Msa1193210:CDS
CAGACAAAGACTTCAACTGT+TGG 0.529420 8_1:-39415169 None:intergenic
CTGCAGCGAAGTAACATATC+CGG 0.531814 8_1:-39415858 None:intergenic
TGTGTTTGGTGATACAAATC+TGG 0.533992 8_1:+39415427 Msa1193210:CDS
GTCTTGTCAAACTCTAATCC+AGG 0.535368 8_1:+39412220 Msa1193210:five_prime_UTR
ACAACCTGAGGCTATAAAAG+TGG 0.543134 8_1:-39412089 None:intergenic
AACTCTATGCTGAAATCTGT+TGG 0.544041 8_1:-39415524 None:intergenic
GATTTCAACAGCAGAACGGT+TGG 0.547321 8_1:-39415468 None:intergenic
GAATGCGCCTTTCTTCCCGA+TGG 0.548620 8_1:-39415972 None:intergenic
AGGCTATAAAAGTGGATACA+AGG 0.550446 8_1:-39412081 None:intergenic
GCTATTAGAGATAGGGTTTG+GGG 0.550769 8_1:-39414910 None:intergenic
ATTTGATTAATGTAGACATA+CGG 0.551866 8_1:-39415139 None:intergenic
TCTTGTTTGGAGAATACCAT+CGG 0.566013 8_1:+39415956 Msa1193210:CDS
AAGACCGGCATCATACAGAT+TGG 0.569074 8_1:-39415937 None:intergenic
ATTCAGGAGAATTGTGGTTG+TGG 0.572050 8_1:-39416221 None:intergenic
TGACCATATAAATGAACTCC+CGG 0.572509 8_1:-39412425 None:intergenic
GATAGTTGAATTTGGTGCAC+CGG 0.578120 8_1:+39415839 Msa1193210:CDS
ATGTTGTAATTCAAATGGAT+CGG 0.579658 8_1:-39415252 None:intergenic
AGTGAAATTCAGGAGAATTG+TGG 0.580977 8_1:-39416227 None:intergenic
ACTTGATATCGTGCATGCAA+AGG 0.582819 8_1:-39415548 None:intergenic
TCACCTGGAAATTGTTCTGT+TGG 0.586544 8_1:+39412445 Msa1193210:CDS
AGTTCATTTATATGGTCACC+TGG 0.589926 8_1:+39412430 Msa1193210:CDS
CAACATCTTGCTCAACGTTG+TGG 0.593794 8_1:+39415269 Msa1193210:CDS
TGGTATTCTCCAAACAAGAC+CGG 0.595331 8_1:-39415952 None:intergenic
TGGTGATTTAGAATCAGGCC+AGG 0.597301 8_1:+39412465 Msa1193210:CDS
CTTGTTTGGAGAATACCATC+GGG 0.597897 8_1:+39415957 Msa1193210:CDS
CTGCAGCACAAAGGAAAAGG+TGG 0.605779 8_1:+39415875 Msa1193210:CDS
CAAGGCGATAAGAAATGTAA+CGG 0.607957 8_1:-39416009 None:intergenic
AGACGTGATCTTGTTGGTGA+AGG 0.611322 8_1:+39415107 Msa1193210:CDS
GAGTAGCCACTTTCATTCAG+AGG 0.621657 8_1:-39415816 None:intergenic
GATGCCAATCTGTATGATGC+CGG 0.622203 8_1:+39415933 Msa1193210:CDS
GATGTTGATGTGTAATAAGG+TGG 0.627600 8_1:-39412126 None:intergenic
TTTCCTAATTGAACAACCTG+AGG 0.634505 8_1:-39412101 None:intergenic
AATGGATTTCAACAGCAGAA+CGG 0.635365 8_1:-39415472 None:intergenic
TACAACTGACAATCTTAACA+TGG 0.643691 8_1:-39415084 None:intergenic
GTTACTTCGCTGCAGCACAA+AGG 0.673717 8_1:+39415866 Msa1193210:CDS
AATTACAAGAGTTGATAACA+AGG 0.697817 8_1:-39416027 None:intergenic
GAACGGTTGGACAAGAACGA+AGG 0.718054 8_1:-39415455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATAATCTATCTT+TGG + chr8_1:39413858-39413877 Msa1193210:intron 10.0%
!! AAAATATATAAAATTGCAAA+GGG - chr8_1:39414305-39414324 None:intergenic 10.0%
!!! ATAAAAATGTTTTTTTGTCA+CGG - chr8_1:39412154-39412173 None:intergenic 15.0%
!! AAATATATAAAATTGCAAAG+GGG - chr8_1:39414304-39414323 None:intergenic 15.0%
!! CAAAATATATAAAATTGCAA+AGG - chr8_1:39414306-39414325 None:intergenic 15.0%
!! ATTACAAATAAAATAGAAAG+TGG + chr8_1:39415317-39415336 Msa1193210:intron 15.0%
!!! GTTATTGATTAGAAAAAATA+TGG - chr8_1:39415376-39415395 None:intergenic 15.0%
!! AAATACATTAATATTCATCC+TGG - chr8_1:39412241-39412260 None:intergenic 20.0%
!! TAAACAAATATTTACTAACC+TGG - chr8_1:39412486-39412505 None:intergenic 20.0%
!!! GTGAATGTCATTATTTTTTA+GGG - chr8_1:39412581-39412600 None:intergenic 20.0%
!!! AGTGAATGTCATTATTTTTT+AGG - chr8_1:39412582-39412601 None:intergenic 20.0%
!!! AATAAAGAGTGTATTATTTC+TGG - chr8_1:39412961-39412980 None:intergenic 20.0%
!! TTTAATTAGTTAAGAGATAC+AGG + chr8_1:39413753-39413772 Msa1193210:intron 20.0%
!! TTCAATAGTTAATAGATACA+GGG + chr8_1:39413790-39413809 Msa1193210:intron 20.0%
!! CTAATTATTTACATAAAGCA+GGG - chr8_1:39414035-39414054 None:intergenic 20.0%
!!! ATATTTTGTTAAATGACTGA+AGG + chr8_1:39414318-39414337 Msa1193210:intron 20.0%
!!! TATTTTGTTAAATGACTGAA+GGG + chr8_1:39414319-39414338 Msa1193210:intron 20.0%
!! GACAAAAAAATTAAAACTGT+AGG - chr8_1:39414596-39414615 None:intergenic 20.0%
!!! AGATTTTTTATGCTACTATT+AGG - chr8_1:39414779-39414798 None:intergenic 20.0%
!! ATTATTCAATAAGTTTGAAC+CGG - chr8_1:39414860-39414879 None:intergenic 20.0%
!! ATTTGATTAATGTAGACATA+CGG - chr8_1:39415142-39415161 None:intergenic 20.0%
!! GAACATATAACACTAAATAA+TGG - chr8_1:39415651-39415670 None:intergenic 20.0%
!!! ACTTCTAAAATAACAGCATA+TGG + chr8_1:39412546-39412565 Msa1193210:intron 25.0%
!!! TCATTATTTTTTAGGGCAAT+GGG - chr8_1:39412574-39412593 None:intergenic 25.0%
!!! GTATTATTTCTGGAAATCAA+AGG - chr8_1:39412951-39412970 None:intergenic 25.0%
!!! GATTTTAGTGTTTGATAAGA+TGG + chr8_1:39413409-39413428 Msa1193210:intron 25.0%
! AAAAGTCACTTATAGTATCA+AGG + chr8_1:39413433-39413452 Msa1193210:intron 25.0%
! AAAGTCACTTATAGTATCAA+GGG + chr8_1:39413434-39413453 Msa1193210:intron 25.0%
!!! GTGACATTAGGTTTATTTTT+TGG - chr8_1:39413545-39413564 None:intergenic 25.0%
! AAAATTCTTAGTGTGACATT+AGG - chr8_1:39413557-39413576 None:intergenic 25.0%
!! AATCATCTTTTGTATAGTGA+GGG - chr8_1:39413651-39413670 None:intergenic 25.0%
! GTTCAATAGTTAATAGATAC+AGG + chr8_1:39413789-39413808 Msa1193210:intron 25.0%
! TACATCAAAATCACTTGTAA+TGG - chr8_1:39413839-39413858 None:intergenic 25.0%
!! GTAAAGCTCTGTTATTTATA+AGG - chr8_1:39413885-39413904 None:intergenic 25.0%
! GCTAATTATTTACATAAAGC+AGG - chr8_1:39414036-39414055 None:intergenic 25.0%
! GTAGTATAAATTGCAAATAG+AGG - chr8_1:39414245-39414264 None:intergenic 25.0%
! ATCATTTCAGATATGAATAG+AGG + chr8_1:39414521-39414540 Msa1193210:intron 25.0%
! AAAAAAAATACCAGCTTATG+TGG - chr8_1:39414702-39414721 None:intergenic 25.0%
!!! CTGGTATTTTTTTTTTTCTC+TGG + chr8_1:39414708-39414727 Msa1193210:intron 25.0%
!! TCTTTCATTTTCATTTCAGA+TGG + chr8_1:39414881-39414900 Msa1193210:intron 25.0%
! ACAATCTTAACATGGAATTA+TGG - chr8_1:39415079-39415098 None:intergenic 25.0%
! ATGTTGTAATTCAAATGGAT+CGG - chr8_1:39415255-39415274 None:intergenic 25.0%
! TTATTTGTAATCTGAAAAGC+AGG - chr8_1:39415308-39415327 None:intergenic 25.0%
! TATTTGGATCAACATCTAAA+TGG - chr8_1:39415493-39415512 None:intergenic 25.0%
! TTATATCTTAATGTCACTGT+TGG + chr8_1:39415597-39415616 Msa1193210:intron 25.0%
!! AACCTTTTTATTCTTGAAAC+AGG - chr8_1:39415704-39415723 None:intergenic 25.0%
!!! AATTACAAGAGTTGATAACA+AGG - chr8_1:39416030-39416049 None:intergenic 25.0%
TACAAGGAAAAGTTAGATCA+TGG - chr8_1:39412068-39412087 None:intergenic 30.0%
!!! AAAATGTTTTTTTGTCACGG+TGG - chr8_1:39412151-39412170 None:intergenic 30.0%
!!! GCTGTTATTTTAGAAGTTTG+TGG - chr8_1:39412543-39412562 None:intergenic 30.0%
!!! GTCATTATTTTTTAGGGCAA+TGG - chr8_1:39412575-39412594 None:intergenic 30.0%
! ATTGGTGACAATTTGAAGTA+AGG + chr8_1:39412630-39412649 Msa1193210:intron 30.0%
! TTGGTGACAATTTGAAGTAA+GGG + chr8_1:39412631-39412650 Msa1193210:intron 30.0%
CAAAGAGTTAAGTTAGAGAA+GGG + chr8_1:39412730-39412749 Msa1193210:intron 30.0%
AAAGAGTTAAGTTAGAGAAG+GGG + chr8_1:39412731-39412750 Msa1193210:intron 30.0%
ATTGAAGAATGATATGTGTC+AGG + chr8_1:39412787-39412806 Msa1193210:intron 30.0%
TTGAAGAATGATATGTGTCA+GGG + chr8_1:39412788-39412807 Msa1193210:intron 30.0%
AAATCATCAAGTCTGTTAAG+AGG + chr8_1:39412858-39412877 Msa1193210:intron 30.0%
GGAAGAAAATAGAGTAGTAA+TGG - chr8_1:39412986-39413005 None:intergenic 30.0%
!! CATTTACTGTTTCTGTAATC+CGG + chr8_1:39413071-39413090 Msa1193210:intron 30.0%
AACAGATACAGTCAATTGAT+AGG - chr8_1:39413184-39413203 None:intergenic 30.0%
!! ATTCTAGTTTGGCATTCAAA+GGG - chr8_1:39413273-39413292 None:intergenic 30.0%
!! AATTCTAGTTTGGCATTCAA+AGG - chr8_1:39413274-39413293 None:intergenic 30.0%
! TACAGAGAAGAATTCTAGTT+TGG - chr8_1:39413284-39413303 None:intergenic 30.0%
GACTTATTTCAAAATGAGCA+TGG + chr8_1:39413330-39413349 Msa1193210:intron 30.0%
CTAAAATCTGTGACTTACTA+TGG - chr8_1:39413397-39413416 None:intergenic 30.0%
! TCACACTAAGAATTTTACGA+TGG + chr8_1:39413561-39413580 Msa1193210:intron 30.0%
AATTTGTAGCGAGAAATTTG+AGG + chr8_1:39413622-39413641 Msa1193210:intron 30.0%
! CAATCATCTTTTGTATAGTG+AGG - chr8_1:39413652-39413671 None:intergenic 30.0%
ATAGAAATTCAGTGTATAGC+CGG + chr8_1:39413906-39413925 Msa1193210:intron 30.0%
TCTCCTCTTATCGTATAAAT+AGG + chr8_1:39414198-39414217 Msa1193210:intron 30.0%
TATATAAAATTGCAAAGGGG+TGG - chr8_1:39414301-39414320 None:intergenic 30.0%
ATTCTCATCTATAAGCTAGT+AGG + chr8_1:39414482-39414501 Msa1193210:intron 30.0%
TTCTCATCTATAAGCTAGTA+GGG + chr8_1:39414483-39414502 Msa1193210:intron 30.0%
TATGTATGGTCTATAAAACC+TGG - chr8_1:39414649-39414668 None:intergenic 30.0%
ATAAGTTTGAACCGGAAAAA+GGG - chr8_1:39414852-39414871 None:intergenic 30.0%
AATAAGTTTGAACCGGAAAA+AGG - chr8_1:39414853-39414872 None:intergenic 30.0%
CATTTCTGCTATTAGAGATA+GGG - chr8_1:39414920-39414939 None:intergenic 30.0%
TCATTTCTGCTATTAGAGAT+AGG - chr8_1:39414921-39414940 None:intergenic 30.0%
! AACATGGAATTATGGTTTTC+CGG - chr8_1:39415071-39415090 None:intergenic 30.0%
TACAACTGACAATCTTAACA+TGG - chr8_1:39415087-39415106 None:intergenic 30.0%
GCAAGATGTTGTAATTCAAA+TGG - chr8_1:39415260-39415279 None:intergenic 30.0%
TTGAATGATATAGCTGTGTT+TGG + chr8_1:39415413-39415432 Msa1193210:CDS 30.0%
ATGGTTACAGAGAATGTAAA+GGG - chr8_1:39415632-39415651 None:intergenic 30.0%
AATGGTTACAGAGAATGTAA+AGG - chr8_1:39415633-39415652 None:intergenic 30.0%
GTCCTGTTTCAAGAATAAAA+AGG + chr8_1:39415699-39415718 Msa1193210:intron 30.0%
GTTATCAACTCTTGTAATTG+TGG + chr8_1:39416031-39416050 Msa1193210:CDS 30.0%
! TAATGCAATTTTTGCTTCAG+TGG + chr8_1:39416120-39416139 Msa1193210:three_prime_UTR 30.0%
AGGCTATAAAAGTGGATACA+AGG - chr8_1:39412084-39412103 None:intergenic 35.0%
TTTCCTAATTGAACAACCTG+AGG - chr8_1:39412104-39412123 None:intergenic 35.0%
GATGTTGATGTGTAATAAGG+TGG - chr8_1:39412129-39412148 None:intergenic 35.0%
GTGGATGTTGATGTGTAATA+AGG - chr8_1:39412132-39412151 None:intergenic 35.0%
!! AATGTATTTTTGCTCGTGCT+AGG + chr8_1:39412252-39412271 Msa1193210:five_prime_UTR 35.0%
CCTATAATCTGCATCTTAGA+TGG - chr8_1:39412281-39412300 None:intergenic 35.0%
! CCATCTAAGATGCAGATTAT+AGG + chr8_1:39412278-39412297 Msa1193210:five_prime_UTR 35.0%
TGACCATATAAATGAACTCC+CGG - chr8_1:39412428-39412447 None:intergenic 35.0%
AGTTCATTTATATGGTCACC+TGG + chr8_1:39412430-39412449 Msa1193210:CDS 35.0%
!! TCTGTTGGTGATTTAGAATC+AGG + chr8_1:39412460-39412479 Msa1193210:CDS 35.0%
TGCTGTTCCTTTCTAAGTTT+GGG + chr8_1:39412510-39412529 Msa1193210:intron 35.0%
CCTTCTCTAACTTAACTCTT+TGG - chr8_1:39412732-39412751 None:intergenic 35.0%
CCAAAGAGTTAAGTTAGAGA+AGG + chr8_1:39412729-39412748 Msa1193210:intron 35.0%
AAGAGTTAAGTTAGAGAAGG+GGG + chr8_1:39412732-39412751 Msa1193210:intron 35.0%
!! GTTTCACGTTTGTTGTCAAA+TGG - chr8_1:39413007-39413026 None:intergenic 35.0%
GAAACTTTGTCGAATCTCTA+TGG + chr8_1:39413022-39413041 Msa1193210:intron 35.0%
CGGATTACAGAAACAGTAAA+TGG - chr8_1:39413073-39413092 None:intergenic 35.0%
!! GTCATCTATTTTGCTGTAGA+TGG + chr8_1:39413119-39413138 Msa1193210:intron 35.0%
! TTGACTGTATCTGTTTTCCT+TGG + chr8_1:39413189-39413208 Msa1193210:intron 35.0%
TCGGCATTTGTTTCAACAAT+AGG + chr8_1:39413229-39413248 Msa1193210:intron 35.0%
! ATGTGAATTGCACATTGGTT+GGG - chr8_1:39413359-39413378 None:intergenic 35.0%
AATGTGAATTGCACATTGGT+TGG - chr8_1:39413360-39413379 None:intergenic 35.0%
AACCAATGTGCAATTCACAT+TGG + chr8_1:39413359-39413378 Msa1193210:intron 35.0%
TCACTTATAGTATCAAGGGA+GGG + chr8_1:39413438-39413457 Msa1193210:intron 35.0%
! AGAATTTTACGATGGATGAG+TGG + chr8_1:39413569-39413588 Msa1193210:intron 35.0%
TGATTGAGTCTTGACTTAAG+TGG + chr8_1:39413666-39413685 Msa1193210:intron 35.0%
CTATGATCAACTCTTGTTAC+CGG - chr8_1:39413724-39413743 None:intergenic 35.0%
AGGACTAACATGTTAAAGCA+GGG - chr8_1:39414095-39414114 None:intergenic 35.0%
TAGGACTAACATGTTAAAGC+AGG - chr8_1:39414096-39414115 None:intergenic 35.0%
! AGTGCTGGAAATGCATATTT+AGG - chr8_1:39414115-39414134 None:intergenic 35.0%
CAGCCTATTTATACGATAAG+AGG - chr8_1:39414204-39414223 None:intergenic 35.0%
TGGAAATTGGACTTTCTCTT+TGG - chr8_1:39414281-39414300 None:intergenic 35.0%
AGTTGAACACAACTGATACA+AGG - chr8_1:39414377-39414396 None:intergenic 35.0%
! TGCATTACTCATCTTGCTTT+TGG + chr8_1:39414558-39414577 Msa1193210:intron 35.0%
!! GCATTACTCATCTTGCTTTT+GGG + chr8_1:39414559-39414578 Msa1193210:intron 35.0%
!! CATTACTCATCTTGCTTTTG+GGG + chr8_1:39414560-39414579 Msa1193210:intron 35.0%
!! ATTACTCATCTTGCTTTTGG+GGG + chr8_1:39414561-39414580 Msa1193210:intron 35.0%
! TTTCAGCTCTATATTTTGCC+AGG + chr8_1:39414628-39414647 Msa1193210:intron 35.0%
GGGATCTATATAGGTATGTA+TGG - chr8_1:39414663-39414682 None:intergenic 35.0%
CAGAACTAAGGGATCTATAT+AGG - chr8_1:39414672-39414691 None:intergenic 35.0%
GTGGATTTACACAGAACTAA+GGG - chr8_1:39414683-39414702 None:intergenic 35.0%
TGTGGATTTACACAGAACTA+AGG - chr8_1:39414684-39414703 None:intergenic 35.0%
ACTATTAGGCAAGAATGCAA+AGG - chr8_1:39414765-39414784 None:intergenic 35.0%
!! CATATAAAGTGCCCTTTTTC+CGG + chr8_1:39414838-39414857 Msa1193210:intron 35.0%
TGCTATTAGAGATAGGGTTT+GGG - chr8_1:39414914-39414933 None:intergenic 35.0%
TGCATCAGATATTGCTTTGT+CGG - chr8_1:39414957-39414976 None:intergenic 35.0%
GTTATTGAAAGATTGCCTTC+TGG + chr8_1:39415221-39415240 Msa1193210:CDS 35.0%
! TGTGTTTGGTGATACAAATC+TGG + chr8_1:39415427-39415446 Msa1193210:CDS 35.0%
! AATGGATTTCAACAGCAGAA+CGG - chr8_1:39415475-39415494 None:intergenic 35.0%
GTTGGCTGTAGTAATGTATT+TGG - chr8_1:39415509-39415528 None:intergenic 35.0%
AACTCTATGCTGAAATCTGT+TGG - chr8_1:39415527-39415546 None:intergenic 35.0%
AACAGGACAAACTTTAGCAA+TGG - chr8_1:39415687-39415706 None:intergenic 35.0%
ACTGGTATAGTACTTTGTTC+AGG - chr8_1:39415729-39415748 None:intergenic 35.0%
TACTGCAATTTACCTGGTAA+GGG - chr8_1:39415760-39415779 None:intergenic 35.0%
ATACTGCAATTTACCTGGTA+AGG - chr8_1:39415761-39415780 None:intergenic 35.0%
! TCTTGTTTGGAGAATACCAT+CGG + chr8_1:39415956-39415975 Msa1193210:CDS 35.0%
CAAGGCGATAAGAAATGTAA+CGG - chr8_1:39416012-39416031 None:intergenic 35.0%
!! GTATCCACTTTTATAGCCTC+AGG + chr8_1:39412085-39412104 Msa1193210:five_prime_UTR 40.0%
ACAACCTGAGGCTATAAAAG+TGG - chr8_1:39412092-39412111 None:intergenic 40.0%
! TAGCCTCAGGTTGTTCAATT+AGG + chr8_1:39412098-39412117 Msa1193210:five_prime_UTR 40.0%
GTCTTGTCAAACTCTAATCC+AGG + chr8_1:39412220-39412239 Msa1193210:five_prime_UTR 40.0%
CTCTGCATCTATTTGTTTGC+CGG + chr8_1:39412406-39412425 Msa1193210:CDS 40.0%
TCTGCATCTATTTGTTTGCC+GGG + chr8_1:39412407-39412426 Msa1193210:CDS 40.0%
TTGCCGGGAGTTCATTTATA+TGG + chr8_1:39412422-39412441 Msa1193210:CDS 40.0%
TCACCTGGAAATTGTTCTGT+TGG + chr8_1:39412445-39412464 Msa1193210:CDS 40.0%
TCACCAACAGAACAATTTCC+AGG - chr8_1:39412451-39412470 None:intergenic 40.0%
! GTGCTGTTCCTTTCTAAGTT+TGG + chr8_1:39412509-39412528 Msa1193210:intron 40.0%
ACACTGACCCAAACTTAGAA+AGG - chr8_1:39412520-39412539 None:intergenic 40.0%
CAATGTGAAGTTCAGGAAGA+AGG - chr8_1:39412614-39412633 None:intergenic 40.0%
CTTCTTCCTGAACTTCACAT+TGG + chr8_1:39412612-39412631 Msa1193210:intron 40.0%
TTGTCACCAATGTGAAGTTC+AGG - chr8_1:39412621-39412640 None:intergenic 40.0%
GTAGATCGGTAGATACTTGT+AGG + chr8_1:39412676-39412695 Msa1193210:intron 40.0%
AGTTAGTAACTGAGAGTGAG+AGG + chr8_1:39412758-39412777 Msa1193210:intron 40.0%
GTCAGGGAAATCCTGTTATA+AGG + chr8_1:39412804-39412823 Msa1193210:intron 40.0%
CTGTTATAAGGATGCTGAGT+GGG + chr8_1:39412816-39412835 Msa1193210:intron 40.0%
TGTTATAAGGATGCTGAGTG+GGG + chr8_1:39412817-39412836 Msa1193210:intron 40.0%
TCATCAAGTCTGTTAAGAGG+CGG + chr8_1:39412861-39412880 Msa1193210:intron 40.0%
TTTGTCGAATCTCTATGGCA+TGG + chr8_1:39413027-39413046 Msa1193210:intron 40.0%
! TGTGAATTGCACATTGGTTG+GGG - chr8_1:39413358-39413377 None:intergenic 40.0%
GACCAATGTGAATTGCACAT+TGG - chr8_1:39413364-39413383 None:intergenic 40.0%
GTCACTTATAGTATCAAGGG+AGG + chr8_1:39413437-39413456 Msa1193210:intron 40.0%
TGGTCACAAAAGACACAGTA+AGG + chr8_1:39413589-39413608 Msa1193210:intron 40.0%
GAGTCTTGACTTAAGTGGTT+TGG + chr8_1:39413671-39413690 Msa1193210:intron 40.0%
TCTTGTTACCGGTACTTCTA+CGG - chr8_1:39413713-39413732 None:intergenic 40.0%
! CGGTAACAAGAGTTGATCAT+AGG + chr8_1:39413722-39413741 Msa1193210:intron 40.0%
AAGCAGGGAATGTGTCAAAT+GGG - chr8_1:39414020-39414039 None:intergenic 40.0%
AAAGCAGGGAATGTGTCAAA+TGG - chr8_1:39414021-39414040 None:intergenic 40.0%
AAGCAGGGAATGTGTCAAAA+GGG - chr8_1:39414080-39414099 None:intergenic 40.0%
AAAGCAGGGAATGTGTCAAA+AGG - chr8_1:39414021-39414040 None:intergenic 40.0%
AATTGCAAAGGGGTGGAAAT+TGG - chr8_1:39414294-39414313 None:intergenic 40.0%
GAATGCAGTTAAAAAGCAGC+AGG + chr8_1:39414422-39414441 Msa1193210:intron 40.0%
CTGTGTAAATCCACATAAGC+TGG + chr8_1:39414689-39414708 Msa1193210:intron 40.0%
CTGGATGAACATTTGCATGT+AGG + chr8_1:39414727-39414746 Msa1193210:intron 40.0%
!! CGGAAAAAGGGCACTTTATA+TGG - chr8_1:39414840-39414859 None:intergenic 40.0%
GCTATTAGAGATAGGGTTTG+GGG - chr8_1:39414913-39414932 None:intergenic 40.0%
CTGCTATTAGAGATAGGGTT+TGG - chr8_1:39414915-39414934 None:intergenic 40.0%
ATGTCTCAAGAAGTCACTTC+TGG + chr8_1:39415029-39415048 Msa1193210:CDS 40.0%
GTTGTAAGACGTGATCTTGT+TGG + chr8_1:39415101-39415120 Msa1193210:CDS 40.0%
CAGACAAAGACTTCAACTGT+TGG - chr8_1:39415172-39415191 None:intergenic 40.0%
ACTTGATATCGTGCATGCAA+AGG - chr8_1:39415551-39415570 None:intergenic 40.0%
TGCATGCACGATATCAAGTA+AGG + chr8_1:39415552-39415571 Msa1193210:intron 40.0%
AGGCAATACTGCAATTTACC+TGG - chr8_1:39415766-39415785 None:intergenic 40.0%
AGAGGGGAAAATGTAAGATG+AGG - chr8_1:39415786-39415805 None:intergenic 40.0%
TCAGAGGCTGCAAAAAAAGA+GGG - chr8_1:39415803-39415822 None:intergenic 40.0%
TTCAGAGGCTGCAAAAAAAG+AGG - chr8_1:39415804-39415823 None:intergenic 40.0%
GGCTACTCGATAGTTGAATT+TGG + chr8_1:39415831-39415850 Msa1193210:CDS 40.0%
!! GATAGTTGAATTTGGTGCAC+CGG + chr8_1:39415839-39415858 Msa1193210:CDS 40.0%
TGGTATTCTCCAAACAAGAC+CGG - chr8_1:39415955-39415974 None:intergenic 40.0%
CTTGTTTGGAGAATACCATC+GGG + chr8_1:39415957-39415976 Msa1193210:CDS 40.0%
! TGGTGATTTAGAATCAGGCC+AGG + chr8_1:39412465-39412484 Msa1193210:CDS 45.0%
CTCTTTGGATGACTCTGAGT+GGG - chr8_1:39412717-39412736 None:intergenic 45.0%
ACTCTTTGGATGACTCTGAG+TGG - chr8_1:39412718-39412737 None:intergenic 45.0%
CCACTCAGCATCCTTATAAC+AGG - chr8_1:39412818-39412837 None:intergenic 45.0%
CCTGTTATAAGGATGCTGAG+TGG + chr8_1:39412815-39412834 Msa1193210:intron 45.0%
!! AGCTTAGCTCTGTGGACAAT+AGG + chr8_1:39412904-39412923 Msa1193210:intron 45.0%
CATCTACTGTGATGCGAATC+CGG - chr8_1:39413093-39413112 None:intergenic 45.0%
! TGTTTCTGCATCTCTTGCCA+AGG - chr8_1:39413209-39413228 None:intergenic 45.0%
GGCAAGAGATGCAGAAACAT+CGG + chr8_1:39413210-39413229 Msa1193210:intron 45.0%
! TTAAGTGGTTTGGACACGTG+TGG + chr8_1:39413681-39413700 Msa1193210:intron 45.0%
CTTGTTACCGGTACTTCTAC+GGG - chr8_1:39413712-39413731 None:intergenic 45.0%
AACCAGCCAACTGGAACAAT+GGG - chr8_1:39414138-39414157 None:intergenic 45.0%
AAACCAGCCAACTGGAACAA+TGG - chr8_1:39414139-39414158 None:intergenic 45.0%
GCAAGATGAGTAATGCAGCA+AGG - chr8_1:39414555-39414574 None:intergenic 45.0%
! AGACGTGATCTTGTTGGTGA+AGG + chr8_1:39415107-39415126 Msa1193210:CDS 45.0%
CAACATCTTGCTCAACGTTG+TGG + chr8_1:39415269-39415288 Msa1193210:CDS 45.0%
GATTTCAACAGCAGAACGGT+TGG - chr8_1:39415471-39415490 None:intergenic 45.0%
CTGGTAAGGGACAACAATAC+TGG - chr8_1:39415747-39415766 None:intergenic 45.0%
CAGTATTGTTGTCCCTTACC+AGG + chr8_1:39415745-39415764 Msa1193210:intron 45.0%
CAGAGGCTGCAAAAAAAGAG+GGG - chr8_1:39415802-39415821 None:intergenic 45.0%
TTGCAGCCTCTGAATGAAAG+TGG + chr8_1:39415810-39415829 Msa1193210:intron 45.0%
! GAGTAGCCACTTTCATTCAG+AGG - chr8_1:39415819-39415838 None:intergenic 45.0%
CTGCAGCGAAGTAACATATC+CGG - chr8_1:39415861-39415880 None:intergenic 45.0%
GATGCCAATCTGTATGATGC+CGG + chr8_1:39415933-39415952 Msa1193210:CDS 45.0%
AAGACCGGCATCATACAGAT+TGG - chr8_1:39415940-39415959 None:intergenic 45.0%
!! TGTATGATGCCGGTCTTGTT+TGG + chr8_1:39415943-39415962 Msa1193210:CDS 45.0%
GAGAATACCATCGGGAAGAA+AGG + chr8_1:39415965-39415984 Msa1193210:CDS 45.0%
! CTTCAGTGGTTCTACGCATT+CGG + chr8_1:39416134-39416153 Msa1193210:three_prime_UTR 45.0%
ATCTGTACCAGCAGTCAGCA+TGG + chr8_1:39412654-39412673 Msa1193210:intron 50.0%
CAGCAGTCAGCATGGTAGAT+CGG + chr8_1:39412662-39412681 Msa1193210:intron 50.0%
CTTGTAGGCCCAAGTATGCA+AGG + chr8_1:39412691-39412710 Msa1193210:intron 50.0%
TGAGTGGGCCTTGCATACTT+GGG - chr8_1:39412702-39412721 None:intergenic 50.0%
! TGTTAAGAGGCGGAGAGCAT+TGG + chr8_1:39412871-39412890 Msa1193210:intron 50.0%
CGGATTCGCATCACAGTAGA+TGG + chr8_1:39413091-39413110 Msa1193210:intron 50.0%
! GGAGAAACCCGTAGAAGTAC+CGG + chr8_1:39413702-39413721 Msa1193210:intron 50.0%
ACAACCAAGCCTTTCTCTCC+AGG - chr8_1:39413937-39413956 None:intergenic 50.0%
! AACTGGAACAATGGGAGTGC+TGG - chr8_1:39414130-39414149 None:intergenic 50.0%
AGCACTCCCATTGTTCCAGT+TGG + chr8_1:39414129-39414148 Msa1193210:intron 50.0%
CGTGTAAGAAACCAGCCAAC+TGG - chr8_1:39414147-39414166 None:intergenic 50.0%
GGATCGGCAAAAACTCCAGA+AGG - chr8_1:39415239-39415258 None:intergenic 50.0%
GAACGGTTGGACAAGAACGA+AGG - chr8_1:39415458-39415477 None:intergenic 50.0%
GTTACTTCGCTGCAGCACAA+AGG + chr8_1:39415866-39415885 Msa1193210:CDS 50.0%
TCGCTGCAGCACAAAGGAAA+AGG + chr8_1:39415872-39415891 Msa1193210:CDS 50.0%
CTGCAGCACAAAGGAAAAGG+TGG + chr8_1:39415875-39415894 Msa1193210:CDS 50.0%
! CGATCTACCATGCTGACTGC+TGG - chr8_1:39412664-39412683 None:intergenic 55.0%
CTGAGTGGGCCTTGCATACT+TGG - chr8_1:39412703-39412722 None:intergenic 55.0%
!! CGGAGAGCATTGGTTCTCTG+AGG + chr8_1:39412881-39412900 Msa1193210:intron 55.0%
!! CTCTGAGGAGCTTAGCTCTG+TGG + chr8_1:39412896-39412915 Msa1193210:intron 55.0%
TCCACCTGGAGAGAAAGGCT+TGG + chr8_1:39413930-39413949 Msa1193210:intron 55.0%
ACCAAGCCTTTCTCTCCAGG+TGG - chr8_1:39413934-39413953 None:intergenic 55.0%
CTCCCATTGTTCCAGTTGGC+TGG + chr8_1:39414133-39414152 Msa1193210:intron 55.0%
! TGGTCTGTGTGAAGCGCTTC+CGG + chr8_1:39415049-39415068 Msa1193210:CDS 55.0%
GAATGCGCCTTTCTTCCCGA+TGG - chr8_1:39415975-39415994 None:intergenic 55.0%
AGGATGCTGAGTGGGGAGAG+AGG + chr8_1:39412824-39412843 Msa1193210:intron 60.0%
GGATGCTGAGTGGGGAGAGA+GGG + chr8_1:39412825-39412844 Msa1193210:intron 60.0%
CTGAGTGGGGAGAGAGGGAT+AGG + chr8_1:39412830-39412849 Msa1193210:intron 60.0%
! AGTGTATAGCCGGCTCCACC+TGG + chr8_1:39413916-39413935 Msa1193210:intron 60.0%
CCTTTCTCTCCAGGTGGAGC+CGG - chr8_1:39413928-39413947 None:intergenic 60.0%
CCGGCTCCACCTGGAGAGAA+AGG + chr8_1:39413925-39413944 Msa1193210:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 39412058 39416234 39412058 ID=Msa1193210;Name=Msa1193210
chr8_1 mRNA 39412058 39416234 39412058 ID=Msa1193210-mRNA-1;Parent=Msa1193210;Name=Msa1193210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=279|1|1|1|0.5|0.6|5|125|315
chr8_1 exon 39412058 39412329 39412058 ID=Msa1193210-mRNA-1:exon:12894;Parent=Msa1193210-mRNA-1
chr8_1 exon 39412375 39412486 39412375 ID=Msa1193210-mRNA-1:exon:12895;Parent=Msa1193210-mRNA-1
chr8_1 exon 39414900 39415290 39414900 ID=Msa1193210-mRNA-1:exon:12896;Parent=Msa1193210-mRNA-1
chr8_1 exon 39415411 39415568 39415411 ID=Msa1193210-mRNA-1:exon:12897;Parent=Msa1193210-mRNA-1
chr8_1 exon 39415816 39416234 39415816 ID=Msa1193210-mRNA-1:exon:12898;Parent=Msa1193210-mRNA-1
chr8_1 five_prime_UTR 39412058 39412329 39412058 ID=Msa1193210-mRNA-1:five_prime_utr;Parent=Msa1193210-mRNA-1
chr8_1 five_prime_UTR 39412375 39412381 39412375 ID=Msa1193210-mRNA-1:five_prime_utr;Parent=Msa1193210-mRNA-1
chr8_1 CDS 39412382 39412486 39412382 ID=Msa1193210-mRNA-1:cds;Parent=Msa1193210-mRNA-1
chr8_1 CDS 39414900 39415290 39414900 ID=Msa1193210-mRNA-1:cds;Parent=Msa1193210-mRNA-1
chr8_1 CDS 39415411 39415568 39415411 ID=Msa1193210-mRNA-1:cds;Parent=Msa1193210-mRNA-1
chr8_1 CDS 39415816 39416109 39415816 ID=Msa1193210-mRNA-1:cds;Parent=Msa1193210-mRNA-1
chr8_1 three_prime_UTR 39416110 39416234 39416110 ID=Msa1193210-mRNA-1:three_prime_utr;Parent=Msa1193210-mRNA-1
Gene Sequence

>Msa1193210

ATGACAACTAGACGATTTATTCAACTCTGCATCTATTTGTTTGCCGGGAGTTCATTTATATGGTCACCTGGAAATTGTTCTGTTGGTGATTTAGAATCAGGCCAGATGGTTGATTCCCCAAACCCTATCTCTAATAGCAGAAATGATAAAGCTTCTTCTCCGACAAAGCAATATCTGATGCAGTCTTATTATGACAGATATACAAGCTTACATGATTCAGATTTTGAAAATTTCATGTCTCAAGAAGTCACTTCTGGTCTGTGTGAAGCGCTTCCGGAAAACCATAATTCCATGTTAAGATTGTCAGTTGTAAGACGTGATCTTGTTGGTGAAGGTTCTCATCGCCGTATGTCTACATTAATCAAATTACAAAGCCAACAGTTGAAGTCTTTGTCTGAACTTTTAAGCTACTCGTGTGAATTCATAGTTATTGAAAGATTGCCTTCTGGAGTTTTTGCCGATCCATTTGAATTACAACATCTTGCTCAACGTTGTGTGTTGAATGATATAGCTGTGTTTGGTGATACAAATCTGGAGCTGCCTTCGTTCTTGTCCAACCGTTCTGCTGTTGAAATCCATTTAGATGTTGATCCAAATACATTACTACAGCCAACAGATTTCAGCATAGAGTTTCCTTTGCATGCACGATATCAACCTCTGAATGAAAGTGGCTACTCGATAGTTGAATTTGGTGCACCGGATATGTTACTTCGCTGCAGCACAAAGGAAAAGGTGGAAAATAACAATTGCTTGTTCAGATTGAAAAACGATGATGCCAATCTGTATGATGCCGGTCTTGTTTGGAGAATACCATCGGGAAGAAAGGCGCATTCTGAACTTGTCTCTGCCGTTACATTTCTTATCGCCTTGTTATCAACTCTTGTAATTGTGGTAACATCATTGCATTATTTCAATTGTAGAGTGAACAAAGATTTGAAACAATCGTAA

Protein sequence

>Msa1193210

MTTRRFIQLCIYLFAGSSFIWSPGNCSVGDLESGQMVDSPNPISNSRNDKASSPTKQYLMQSYYDRYTSLHDSDFENFMSQEVTSGLCEALPENHNSMLRLSVVRRDLVGEGSHRRMSTLIKLQSQQLKSLSELLSYSCEFIVIERLPSGVFADPFELQHLAQRCVLNDIAVFGDTNLELPSFLSNRSAVEIHLDVDPNTLLQPTDFSIEFPLHARYQPLNESGYSIVEFGAPDMLLRCSTKEKVENNNCLFRLKNDDANLYDAGLVWRIPSGRKAHSELVSAVTFLIALLSTLVIVVTSLHYFNCRVNKDLKQS*