Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194850 | XP_003623905.2 | 83.008 | 359 | 14 | 3 | 5 | 362 | 65 | 377 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1194850 | Msa1248490 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194850 | MtrunA17_Chr7g0247241 | 83.008 | 359 | 14 | 3 | 5 | 362 | 65 | 377 | 0.0 | 577 |
| Msa1194850 | MtrunA17_Chr5g0411521 | 73.545 | 378 | 24 | 5 | 3 | 361 | 92 | 412 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194850 | AT3G53440.2 | 36.122 | 263 | 97 | 6 | 98 | 360 | 260 | 451 | 7.11e-36 | 137 |
| Msa1194850 | AT3G53440.1 | 36.122 | 263 | 97 | 6 | 98 | 360 | 260 | 451 | 7.11e-36 | 137 |
Find 118 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATCAATTAAGATTT+AGG | 0.116714 | 8_1:-42401218 | Msa1194850:CDS |
| AACTTCTTCATTGCTCAAAT+TGG | 0.134971 | 8_1:+42404159 | None:intergenic |
| TGAAGATTTGTTAGTGGATT+TGG | 0.148973 | 8_1:+42404222 | None:intergenic |
| CAAAGCCTAGTCCACATTTC+TGG | 0.233776 | 8_1:-42403807 | Msa1194850:CDS |
| GAAGATTTGTTAGTGGATTT+GGG | 0.249707 | 8_1:+42404223 | None:intergenic |
| GATGTTAAAATGAGTGAATT+TGG | 0.291828 | 8_1:-42404102 | Msa1194850:CDS |
| TGTCAATCAATTAAGATTTA+GGG | 0.297311 | 8_1:-42401217 | Msa1194850:CDS |
| CTGGAACAACGTTTCAAAAC+TGG | 0.305440 | 8_1:-42403788 | Msa1194850:intron |
| TTTGAGAATATTTGATTTGC+CGG | 0.323852 | 8_1:+42401566 | None:intergenic |
| TTCTGAGTAACGATGCTCTT+TGG | 0.337740 | 8_1:+42401543 | None:intergenic |
| AAGTCTCTTTCTAGATTTAG+TGG | 0.343248 | 8_1:-42401315 | Msa1194850:CDS |
| TTGTTAGTGGATTTGGGTTG+TGG | 0.343302 | 8_1:+42404229 | None:intergenic |
| TGTTAGTGGATTTGGGTTGT+GGG | 0.351962 | 8_1:+42404230 | None:intergenic |
| ATCTCTCATTGCAAATTTGT+AGG | 0.355575 | 8_1:+42401361 | None:intergenic |
| AAAGTTGATCAAAATCATAA+AGG | 0.382393 | 8_1:-42401489 | Msa1194850:CDS |
| CAAAATCTGTTGCAGGTACC+TGG | 0.382661 | 8_1:-42401744 | Msa1194850:intron |
| GAGATTGAAGGTGGAGAAGA+AGG | 0.384382 | 8_1:-42403985 | Msa1194850:CDS |
| TCTAGATTTAGTGGCTCATC+AGG | 0.392797 | 8_1:-42401306 | Msa1194850:CDS |
| AAGTTGATCAAAATCATAAA+GGG | 0.398649 | 8_1:-42401488 | Msa1194850:CDS |
| GGTGATCTTCGCGGGGTGCC+AGG | 0.406443 | 8_1:+42404284 | None:intergenic |
| ACTTCTTCATTGCTCAAATT+GGG | 0.415802 | 8_1:+42404160 | None:intergenic |
| AATTAAGATTTAGGGACCTT+AGG | 0.417162 | 8_1:-42401209 | Msa1194850:CDS |
| TGGTTGAAGGTGGTAGAAAA+AGG | 0.424066 | 8_1:-42404059 | Msa1194850:CDS |
| CCGGGTTGAAGATTTGTTAG+TGG | 0.427027 | 8_1:+42404216 | None:intergenic |
| TTCTTTACTTGCTTTAGCAC+AGG | 0.435819 | 8_1:+42401261 | None:intergenic |
| GATAAAGATGGCATTGCAGC+AGG | 0.438944 | 8_1:-42402329 | Msa1194850:CDS |
| GCCAGGTGGGTACACGACGG+TGG | 0.441034 | 8_1:+42404301 | None:intergenic |
| ATCTTCGCGGGGTGCCAGGT+GGG | 0.443027 | 8_1:+42404288 | None:intergenic |
| CTAGTCTCGGTGATCTTCGC+GGG | 0.445377 | 8_1:+42404276 | None:intergenic |
| GTGGACTAAGGAACAAGAAT+TGG | 0.455229 | 8_1:-42403854 | Msa1194850:CDS |
| AAGGTGGAGAAGAAGGGAAA+AGG | 0.458473 | 8_1:-42403978 | Msa1194850:CDS |
| CCAGGTGGGTACACGACGGT+GGG | 0.464187 | 8_1:+42404302 | None:intergenic |
| GGTCAAGATCCAAAACCGTT+AGG | 0.464765 | 8_1:-42404195 | Msa1194850:five_prime_UTR |
| GGCGATGGAATTGAGGAAGG+GGG | 0.464980 | 8_1:-42404018 | Msa1194850:CDS |
| GCACGATGGTGGTGAAATAG+TGG | 0.465629 | 8_1:-42403953 | Msa1194850:CDS |
| GTGTGCCACATCGCAGCGGC+TGG | 0.467254 | 8_1:+42402355 | None:intergenic |
| AGTAAACTGCTCATACCTAC+TGG | 0.476955 | 8_1:-42401597 | Msa1194850:CDS |
| CTCAATGTCAGCCTCGATCA+AGG | 0.480704 | 8_1:-42401668 | Msa1194850:CDS |
| AAGCAACAAAAGGAAAATCA+AGG | 0.484594 | 8_1:-42401387 | Msa1194850:CDS |
| TGGCGATGGAATTGAGGAAG+GGG | 0.494923 | 8_1:-42404019 | Msa1194850:CDS |
| AGAAAGCGCGGTGGTGGCGA+TGG | 0.496554 | 8_1:-42404033 | Msa1194850:CDS |
| GATCTTCGCGGGGTGCCAGG+TGG | 0.499511 | 8_1:+42404287 | None:intergenic |
| GTCAAGATCCAAAACCGTTA+GGG | 0.500179 | 8_1:-42404194 | Msa1194850:five_prime_UTR |
| GGGAAGAAGGAAGAGATTGA+AGG | 0.500449 | 8_1:-42403997 | Msa1194850:CDS |
| GACGAGGGAGTTGTGGTTGA+AGG | 0.500729 | 8_1:-42404072 | Msa1194850:CDS |
| GTTAGTGGATTTGGGTTGTG+GGG | 0.505620 | 8_1:+42404231 | None:intergenic |
| ATTCACATTCTTACAATCAC+AGG | 0.506493 | 8_1:-42404427 | Msa1194850:five_prime_UTR |
| TAGAAGCTGCTCTTCTCCTA+AGG | 0.507172 | 8_1:+42401193 | None:intergenic |
| GCGATGGAATTGAGGAAGGG+GGG | 0.507530 | 8_1:-42404017 | Msa1194850:CDS |
| TTGTACTCCCAAGCAACAAA+AGG | 0.508228 | 8_1:-42401397 | Msa1194850:CDS |
| CGGTGGTGGCGATGGAATTG+AGG | 0.510231 | 8_1:-42404025 | Msa1194850:CDS |
| TTTACTTGCTTTAGCACAGG+TGG | 0.511523 | 8_1:+42401264 | None:intergenic |
| CAATCTTGTTTAGACTTCCC+AGG | 0.515115 | 8_1:+42401726 | None:intergenic |
| GATAAGGAAGGAATTGCAGC+AGG | 0.516244 | 8_1:-42403101 | Msa1194850:CDS |
| AGGAGAAGAAAGCGCGGTGG+TGG | 0.517370 | 8_1:-42404039 | Msa1194850:CDS |
| CGATGCTGCACACAATGATA+AGG | 0.522807 | 8_1:-42403117 | Msa1194850:CDS |
| AGGAAGAGAAAGCGCGGTGG+TGG | 0.525493 | 8_1:-42403892 | Msa1194850:CDS |
| GAAACGTTGTTCCAGAAATG+TGG | 0.527689 | 8_1:+42403796 | None:intergenic |
| ACTAGTCTCGGTGATCTTCG+CGG | 0.527986 | 8_1:+42404275 | None:intergenic |
| CCCACCGTCGTGTACCCACC+TGG | 0.529398 | 8_1:-42404302 | Msa1194850:five_prime_UTR |
| CAGATATTGAGAATTGATGA+AGG | 0.530440 | 8_1:+42401622 | None:intergenic |
| AAGAAGGAAGAGATTGAAGG+TGG | 0.534159 | 8_1:-42403994 | Msa1194850:CDS |
| AATAGTGGAAGAGTTGAGGA+AGG | 0.535399 | 8_1:-42403938 | Msa1194850:CDS |
| AGATTGAAGGTGGAGAAGAA+GGG | 0.536092 | 8_1:-42403984 | Msa1194850:CDS |
| GCTCATACCTACTGGAAAGA+AGG | 0.545149 | 8_1:-42401589 | Msa1194850:CDS |
| GTGAAATAGTGGAAGAGTTG+AGG | 0.549461 | 8_1:-42403942 | Msa1194850:CDS |
| TTGTTCCAGAAATGTGGACT+AGG | 0.553064 | 8_1:+42403802 | None:intergenic |
| GTGGCGATGGAATTGAGGAA+GGG | 0.557897 | 8_1:-42404020 | Msa1194850:CDS |
| GAGAAGAGCAGCTTCTACAC+GGG | 0.570089 | 8_1:-42401187 | Msa1194850:CDS |
| TGTGTGCAGCATCGCAGTGG+CGG | 0.573460 | 8_1:+42403126 | None:intergenic |
| ACAAGAATTGGCTCTGCGAA+CGG | 0.574620 | 8_1:-42403842 | Msa1194850:CDS |
| ATTGCCTTTGCCCTTGATCG+AGG | 0.578198 | 8_1:+42401657 | None:intergenic |
| AAGTTGAATGTGATGTGAAA+AGG | 0.580210 | 8_1:-42403912 | Msa1194850:CDS |
| TTCATGTGACGAGGGAGTTG+TGG | 0.580613 | 8_1:-42404079 | Msa1194850:CDS |
| ATACCTACTGGAAAGAAGGC+CGG | 0.585107 | 8_1:-42401585 | Msa1194850:CDS |
| TTGCCGGCCTTCTTTCCAGT+AGG | 0.585999 | 8_1:+42401582 | None:intergenic |
| AGTTGCACAAGGGTGGACTA+AGG | 0.587210 | 8_1:-42403866 | Msa1194850:CDS |
| AAAATCTGTTGCAGGTACCT+GGG | 0.591061 | 8_1:-42401743 | Msa1194850:intron |
| GTGGCACACAATGATAAAGA+TGG | 0.592029 | 8_1:-42402341 | Msa1194850:CDS |
| GGTGGCGATGGAATTGAGGA+AGG | 0.592839 | 8_1:-42404021 | Msa1194850:CDS |
| GGAGTACAAAGTTCTTCACT+AGG | 0.595502 | 8_1:+42401411 | None:intergenic |
| GGAGAAGAGCAGCTTCTACA+CGG | 0.597341 | 8_1:-42401188 | Msa1194850:CDS |
| TCAATGTCAGCCTCGATCAA+GGG | 0.602031 | 8_1:-42401667 | Msa1194850:CDS |
| ACAGTCCAGCCGCTGCGATG+TGG | 0.609578 | 8_1:-42402360 | Msa1194850:intron |
| GAGGGAGTTGTGGTTGAAGG+TGG | 0.611478 | 8_1:-42404069 | Msa1194850:CDS |
| CTTGATCGAGGCTGACATTG+AGG | 0.617140 | 8_1:+42401669 | None:intergenic |
| TCAGCCTCGATCAAGGGCAA+AGG | 0.617327 | 8_1:-42401661 | Msa1194850:CDS |
| TGATGGAGGAGCACTAGTCT+CGG | 0.622703 | 8_1:+42404263 | None:intergenic |
| GGGAAAAGGAAGCACGATGG+TGG | 0.631818 | 8_1:-42403964 | Msa1194850:CDS |
| AGATATTGAGAATTGATGAA+GGG | 0.632083 | 8_1:+42401623 | None:intergenic |
| GGTGGTGGTGAAGTTGCACA+AGG | 0.634091 | 8_1:-42403877 | Msa1194850:CDS |
| AGCAACAAAAGGAAAATCAA+GGG | 0.634134 | 8_1:-42401386 | Msa1194850:CDS |
| GCTGCACACAATGATAAGGA+AGG | 0.641647 | 8_1:-42403113 | Msa1194850:CDS |
| AGTTGATCAAAATCATAAAG+GGG | 0.648404 | 8_1:-42401487 | Msa1194850:CDS |
| CATTGTGTGCAGCATCGCAG+TGG | 0.649922 | 8_1:+42403123 | None:intergenic |
| GTGGTGAAGTTGCACAAGGG+TGG | 0.656463 | 8_1:-42403873 | Msa1194850:CDS |
| CCACTAACAAATCTTCAACC+CGG | 0.656991 | 8_1:-42404216 | Msa1194850:five_prime_UTR |
| CAGGTGGGTACACGACGGTG+GGG | 0.657677 | 8_1:+42404303 | None:intergenic |
| GCTGACATTGAGGTGGTGTG+TGG | 0.659104 | 8_1:+42401679 | None:intergenic |
| GAGGTGGTGTGTGGAAGTCG+TGG | 0.661838 | 8_1:+42401688 | None:intergenic |
| GATATTGAGAATTGATGAAG+GGG | 0.662180 | 8_1:+42401624 | None:intergenic |
| GAATTTGGTTCATGTGACGA+GGG | 0.663373 | 8_1:-42404087 | Msa1194850:CDS |
| TGAATTTGGTTCATGTGACG+AGG | 0.668072 | 8_1:-42404088 | Msa1194850:CDS |
| ATAAAGATGGCATTGCAGCA+GGG | 0.670627 | 8_1:-42402328 | Msa1194850:CDS |
| GGTGCCAGGTGGGTACACGA+CGG | 0.674231 | 8_1:+42404298 | None:intergenic |
| CATTGTGTGCCACATCGCAG+CGG | 0.677890 | 8_1:+42402351 | None:intergenic |
| TAGTCTCGGTGATCTTCGCG+GGG | 0.678403 | 8_1:+42404277 | None:intergenic |
| GTGAAAAGGAAGAGAAAGCG+CGG | 0.692032 | 8_1:-42403898 | Msa1194850:CDS |
| CATTGCAGCAGGGCTTACAG+TGG | 0.693165 | 8_1:-42402318 | Msa1194850:CDS |
| ATAAGGAAGGAATTGCAGCA+GGG | 0.695488 | 8_1:-42403100 | Msa1194850:CDS |
| GTGGTGGTGAAGTTGCACAA+GGG | 0.698386 | 8_1:-42403876 | Msa1194850:CDS |
| GATCGAGGCTGACATTGAGG+TGG | 0.699614 | 8_1:+42401672 | None:intergenic |
| GCTAAAGCAAGTAAAGAACA+AGG | 0.708807 | 8_1:-42401256 | Msa1194850:CDS |
| GACGATTCTACTGAACAGAG+AGG | 0.722009 | 8_1:+42404360 | None:intergenic |
| AATTGCAGCAGGGCTTACAG+CGG | 0.735043 | 8_1:-42403090 | Msa1194850:intron |
| GAAGGGAAAAGGAAGCACGA+TGG | 0.741513 | 8_1:-42403967 | Msa1194850:CDS |
| AAAAGGAAGAGAAAGCGCGG+TGG | 0.749477 | 8_1:-42403895 | Msa1194850:CDS |
| AAAAGGAGAAGAAAGCGCGG+TGG | 0.767589 | 8_1:-42404042 | Msa1194850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTATTTTTTTTA+AGG | + | chr8_1:42403506-42403525 | None:intergenic | 0.0% |
| !! | AATATATAACATATTGTTTA+TGG | - | chr8_1:42402845-42402864 | Msa1194850:intron | 10.0% |
| !!! | ATAAAATTATAATTTGTTGA+TGG | - | chr8_1:42403777-42403796 | Msa1194850:intron | 10.0% |
| !!! | CATTTTAACATCATTTTTCT+TGG | + | chr8_1:42401495-42401514 | None:intergenic | 20.0% |
| !! | TGAGAAACTATTAAGATTAA+TGG | - | chr8_1:42401990-42402009 | Msa1194850:intron | 20.0% |
| !! | GAGAAACTATTAAGATTAAT+GGG | - | chr8_1:42401991-42402010 | Msa1194850:intron | 20.0% |
| !! | AATTATAGTGTTTAATCCAA+TGG | - | chr8_1:42402583-42402602 | Msa1194850:intron | 20.0% |
| !! | ATTTCTCATATAGTATTTCT+AGG | + | chr8_1:42402783-42402802 | None:intergenic | 20.0% |
| !! | TATATTTAACAGTTACCTTT+AGG | + | chr8_1:42403473-42403492 | None:intergenic | 20.0% |
| !! | ATTTCATAAAGATGTATGAA+TGG | + | chr8_1:42403687-42403706 | None:intergenic | 20.0% |
| !!! | TATTACAATTTTCTTTGTGA+TGG | + | chr8_1:42403760-42403779 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCAAAATCATAA+AGG | - | chr8_1:42404116-42404135 | Msa1194850:CDS | 20.0% |
| !!! | AAGTTGATCAAAATCATAAA+GGG | - | chr8_1:42404117-42404136 | Msa1194850:CDS | 20.0% |
| !! | TTAGTAGAAAAATCAATGTT+GGG | + | chr8_1:42404164-42404183 | None:intergenic | 20.0% |
| !! | ATTAGTAGAAAAATCAATGT+TGG | + | chr8_1:42404165-42404184 | None:intergenic | 20.0% |
| !! | ATGTCAATCAATTAAGATTT+AGG | - | chr8_1:42404387-42404406 | Msa1194850:five_prime_UTR | 20.0% |
| !! | TGTCAATCAATTAAGATTTA+GGG | - | chr8_1:42404388-42404407 | Msa1194850:five_prime_UTR | 20.0% |
| ! | GATGTTAAAATGAGTGAATT+TGG | - | chr8_1:42401503-42401522 | Msa1194850:CDS | 25.0% |
| !! | AACTATTAAGATTAATGGGT+TGG | - | chr8_1:42401995-42402014 | Msa1194850:intron | 25.0% |
| ! | TGATATGTGACATCATATTA+TGG | - | chr8_1:42402027-42402046 | Msa1194850:intron | 25.0% |
| ! | AAACCTTATCACACTAAATA+TGG | + | chr8_1:42402076-42402095 | None:intergenic | 25.0% |
| ! | ATATTTAGTGTGATAAGGTT+TGG | - | chr8_1:42402075-42402094 | Msa1194850:intron | 25.0% |
| !! | TTCAGTAAGCTAAATTTGTT+CGG | - | chr8_1:42402124-42402143 | Msa1194850:intron | 25.0% |
| !! | ATTGTGAGATTTGAAATTTC+TGG | - | chr8_1:42402313-42402332 | Msa1194850:CDS | 25.0% |
| !! | TTGTGAGATTTGAAATTTCT+GGG | - | chr8_1:42402314-42402333 | Msa1194850:CDS | 25.0% |
| !!! | TAATCCAATGGTTTTATAGA+AGG | - | chr8_1:42402595-42402614 | Msa1194850:intron | 25.0% |
| ! | CTATGAAAAATATCTGTAGT+TGG | - | chr8_1:42402679-42402698 | Msa1194850:intron | 25.0% |
| ! | TATCAAACTCACTAATCAAT+AGG | + | chr8_1:42402818-42402837 | None:intergenic | 25.0% |
| !!! | TCAGTAAGCTAAACTTTTTT+TGG | - | chr8_1:42402944-42402963 | Msa1194850:intron | 25.0% |
| !!! | AAACTTTTTTTGGCATACTA+TGG | - | chr8_1:42402954-42402973 | Msa1194850:intron | 25.0% |
| ! | TCAAAAGAACAACAAAACAA+AGG | + | chr8_1:42403184-42403203 | None:intergenic | 25.0% |
| !! | TTGATCCAATGATTTTATAG+AGG | - | chr8_1:42403363-42403382 | Msa1194850:intron | 25.0% |
| ! | TAACAACAGCATATTAGAAA+CGG | + | chr8_1:42403424-42403443 | None:intergenic | 25.0% |
| ! | TCTTTGTGTTTATTTCCTAA+AGG | - | chr8_1:42403455-42403474 | Msa1194850:intron | 25.0% |
| !!! | ACAGAATCACTTTTACTTTT+CGG | - | chr8_1:42403708-42403727 | Msa1194850:intron | 25.0% |
| ! | AGATATTGAGAATTGATGAA+GGG | + | chr8_1:42403985-42404004 | None:intergenic | 25.0% |
| !!! | TTTGAGAATATTTGATTTGC+CGG | + | chr8_1:42404042-42404061 | None:intergenic | 25.0% |
| !!! | GATTTTGATCAACTTTAAGA+TGG | + | chr8_1:42404112-42404131 | None:intergenic | 25.0% |
| ! | AGTTGATCAAAATCATAAAG+GGG | - | chr8_1:42404118-42404137 | Msa1194850:CDS | 25.0% |
| ATTCACATTCTTACAATCAC+AGG | - | chr8_1:42401178-42401197 | Msa1194850:CDS | 30.0% | |
| !!! | AACTTGTTGTTGTTTTTGAG+AGG | + | chr8_1:42401221-42401240 | None:intergenic | 30.0% |
| ! | ATTTTCACAAACACTTGGTA+GGG | + | chr8_1:42401270-42401289 | None:intergenic | 30.0% |
| ! | CTTTCATTTTCACAAACACT+TGG | + | chr8_1:42401275-42401294 | None:intergenic | 30.0% |
| !! | GAAGATTTGTTAGTGGATTT+GGG | + | chr8_1:42401385-42401404 | None:intergenic | 30.0% |
| !! | TGAAGATTTGTTAGTGGATT+TGG | + | chr8_1:42401386-42401405 | None:intergenic | 30.0% |
| ACTTCTTCATTGCTCAAATT+GGG | + | chr8_1:42401448-42401467 | None:intergenic | 30.0% | |
| AACTTCTTCATTGCTCAAAT+TGG | + | chr8_1:42401449-42401468 | None:intergenic | 30.0% | |
| !! | TCATTTTTCTTGGAGAATCT+AGG | + | chr8_1:42401485-42401504 | None:intergenic | 30.0% |
| AAGTTGAATGTGATGTGAAA+AGG | - | chr8_1:42401693-42401712 | Msa1194850:CDS | 30.0% | |
| ! | ATCGAATTATGTTTCTAACG+AGG | - | chr8_1:42401931-42401950 | Msa1194850:intron | 30.0% |
| AAATTCGTCAAGTATCAACA+AGG | - | chr8_1:42402156-42402175 | Msa1194850:intron | 30.0% | |
| ! | CTACTAACTAGTTTAAACCT+AGG | + | chr8_1:42402216-42402235 | None:intergenic | 30.0% |
| AGTAGTGTGTTTGTATAGAA+AGG | - | chr8_1:42402231-42402250 | Msa1194850:intron | 30.0% | |
| !!! | AGCGATTATTTTTGAGCAAA+TGG | + | chr8_1:42402347-42402366 | None:intergenic | 30.0% |
| !! | ATGACGATATTGGTTTATCA+CGG | - | chr8_1:42402372-42402391 | Msa1194850:intron | 30.0% |
| GAGAAACAACTACAAAACAA+TGG | + | chr8_1:42402410-42402429 | None:intergenic | 30.0% | |
| !! | TGTAGTTGTTTCTCAATGTT+AGG | - | chr8_1:42402416-42402435 | Msa1194850:intron | 30.0% |
| AATGCCTTCTATAAAACCAT+TGG | + | chr8_1:42402602-42402621 | None:intergenic | 30.0% | |
| TAGAATTATGTGTCCAAATG+AGG | - | chr8_1:42402753-42402772 | Msa1194850:intron | 30.0% | |
| GAAGTTTCAAATCTCACAAT+TGG | + | chr8_1:42403088-42403107 | None:intergenic | 30.0% | |
| ! | CAAAACAAAGGCATAAGATA+AGG | + | chr8_1:42403172-42403191 | None:intergenic | 30.0% |
| ! | TGTCTATCGAATATCGTTTT+TGG | - | chr8_1:42403541-42403560 | Msa1194850:intron | 30.0% |
| !! | ACTTTTACTTTTCGGATTAC+TGG | - | chr8_1:42403716-42403735 | Msa1194850:intron | 30.0% |
| TTAGCACATATGCATTTATC+TGG | + | chr8_1:42403814-42403833 | None:intergenic | 30.0% | |
| GATATTGAGAATTGATGAAG+GGG | + | chr8_1:42403984-42404003 | None:intergenic | 30.0% | |
| CAGATATTGAGAATTGATGA+AGG | + | chr8_1:42403986-42404005 | None:intergenic | 30.0% | |
| !! | TGATTTTCCTTTTGTTGCTT+GGG | + | chr8_1:42404218-42404237 | None:intergenic | 30.0% |
| ! | TTGATTTTCCTTTTGTTGCT+TGG | + | chr8_1:42404219-42404238 | None:intergenic | 30.0% |
| AAGCAACAAAAGGAAAATCA+AGG | - | chr8_1:42404218-42404237 | Msa1194850:five_prime_UTR | 30.0% | |
| AGCAACAAAAGGAAAATCAA+GGG | - | chr8_1:42404219-42404238 | Msa1194850:five_prime_UTR | 30.0% | |
| ATCTCTCATTGCAAATTTGT+AGG | + | chr8_1:42404247-42404266 | None:intergenic | 30.0% | |
| AAGTCTCTTTCTAGATTTAG+TGG | - | chr8_1:42404290-42404309 | Msa1194850:five_prime_UTR | 30.0% | |
| AATTAAGATTTAGGGACCTT+AGG | - | chr8_1:42404396-42404415 | Msa1194850:five_prime_UTR | 30.0% | |
| ! | CATTTTCACAAACACTTGGT+AGG | + | chr8_1:42401271-42401290 | None:intergenic | 35.0% |
| ! | TTTTCTTACCCTAACGGTTT+TGG | + | chr8_1:42401422-42401441 | None:intergenic | 35.0% |
| ACTAAATATGGTCGAGTACA+TGG | + | chr8_1:42402064-42402083 | None:intergenic | 35.0% | |
| CGACCATATTTAGTGTGATA+AGG | - | chr8_1:42402070-42402089 | Msa1194850:intron | 35.0% | |
| ATAACTAGATAACGTGTCCT+AGG | - | chr8_1:42402196-42402215 | Msa1194850:intron | 35.0% | |
| TTGTATAGAAAGGTCTTCTC+AGG | - | chr8_1:42402241-42402260 | Msa1194850:intron | 35.0% | |
| ACTAATCCGCTATGAGATTA+AGG | + | chr8_1:42402288-42402307 | None:intergenic | 35.0% | |
| !! | TTTATAGAAGGCATTGCATC+AGG | - | chr8_1:42402607-42402626 | Msa1194850:intron | 35.0% |
| !! | TTATAGAAGGCATTGCATCA+GGG | - | chr8_1:42402608-42402627 | Msa1194850:intron | 35.0% |
| ! | ATTTCTAGGTCTTCCTCATT+TGG | + | chr8_1:42402769-42402788 | None:intergenic | 35.0% |
| ! | AAGTCTTATCCCACTAAGTA+GGG | + | chr8_1:42402894-42402913 | None:intergenic | 35.0% |
| TCAGCAAAGTTCAACACAAT+TGG | - | chr8_1:42402990-42403009 | Msa1194850:intron | 35.0% | |
| CAACACAATTGGTAAATAGC+TGG | - | chr8_1:42403001-42403020 | Msa1194850:intron | 35.0% | |
| GTCCTAGGTTGTTTATAGAA+AGG | - | chr8_1:42403031-42403050 | Msa1194850:intron | 35.0% | |
| CGTCTTTGAGTGAATCTTTA+GGG | + | chr8_1:42403129-42403148 | None:intergenic | 35.0% | |
| TCGTCTTTGAGTGAATCTTT+AGG | + | chr8_1:42403130-42403149 | None:intergenic | 35.0% | |
| TGCAGCCTCTATAAAATCAT+TGG | + | chr8_1:42403371-42403390 | None:intergenic | 35.0% | |
| ACAATGTCCAGTATGATGTT+TGG | - | chr8_1:42403390-42403409 | Msa1194850:intron | 35.0% | |
| CAATGTCCAGTATGATGTTT+GGG | - | chr8_1:42403391-42403410 | Msa1194850:intron | 35.0% | |
| TTACATCCCAAACATCATAC+TGG | + | chr8_1:42403400-42403419 | None:intergenic | 35.0% | |
| TTCTTTACTTGCTTTAGCAC+AGG | + | chr8_1:42404347-42404366 | None:intergenic | 35.0% | |
| GCTAAAGCAAGTAAAGAACA+AGG | - | chr8_1:42404349-42404368 | Msa1194850:five_prime_UTR | 35.0% | |
| !! | TGTTAGTGGATTTGGGTTGT+GGG | + | chr8_1:42401378-42401397 | None:intergenic | 40.0% |
| !! | TTGTTAGTGGATTTGGGTTG+TGG | + | chr8_1:42401379-42401398 | None:intergenic | 40.0% |
| CCACTAACAAATCTTCAACC+CGG | - | chr8_1:42401389-42401408 | Msa1194850:CDS | 40.0% | |
| !!! | TAACGGTTTTGGATCTTGAC+CGG | + | chr8_1:42401411-42401430 | None:intergenic | 40.0% |
| GTCAAGATCCAAAACCGTTA+GGG | - | chr8_1:42401411-42401430 | Msa1194850:CDS | 40.0% | |
| ! | GGGTGATTTTCTTACCCTAA+CGG | + | chr8_1:42401428-42401447 | None:intergenic | 40.0% |
| ! | TGAATTTGGTTCATGTGACG+AGG | - | chr8_1:42401517-42401536 | Msa1194850:CDS | 40.0% |
| ! | GAATTTGGTTCATGTGACGA+GGG | - | chr8_1:42401518-42401537 | Msa1194850:CDS | 40.0% |
| TGGTTGAAGGTGGTAGAAAA+AGG | - | chr8_1:42401546-42401565 | Msa1194850:CDS | 40.0% | |
| AGAAAAAGGAGAAGAAAGCG+CGG | - | chr8_1:42401560-42401579 | Msa1194850:CDS | 40.0% | |
| AAGAAGGAAGAGATTGAAGG+TGG | - | chr8_1:42401611-42401630 | Msa1194850:CDS | 40.0% | |
| AGATTGAAGGTGGAGAAGAA+GGG | - | chr8_1:42401621-42401640 | Msa1194850:CDS | 40.0% | |
| ! | GTGAAATAGTGGAAGAGTTG+AGG | - | chr8_1:42401663-42401682 | Msa1194850:CDS | 40.0% |
| ! | AATAGTGGAAGAGTTGAGGA+AGG | - | chr8_1:42401667-42401686 | Msa1194850:CDS | 40.0% |
| ! | GTGGACTAAGGAACAAGAAT+TGG | - | chr8_1:42401751-42401770 | Msa1194850:intron | 40.0% |
| TTGTTCCAGAAATGTGGACT+AGG | + | chr8_1:42401806-42401825 | None:intergenic | 40.0% | |
| GAAACGTTGTTCCAGAAATG+TGG | + | chr8_1:42401812-42401831 | None:intergenic | 40.0% | |
| CTGGAACAACGTTTCAAAAC+TGG | - | chr8_1:42401817-42401836 | Msa1194850:intron | 40.0% | |
| GTGATGCCTTAATCTCATAG+CGG | - | chr8_1:42402279-42402298 | Msa1194850:intron | 40.0% | |
| TCGCTCAAAGATGACGATAT+TGG | - | chr8_1:42402362-42402381 | Msa1194850:intron | 40.0% | |
| ATAAGGAAGGAATTGCAGCA+GGG | - | chr8_1:42402505-42402524 | Msa1194850:intron | 40.0% | |
| ACGTATTTGACCCTACTTAG+TGG | - | chr8_1:42402881-42402900 | Msa1194850:intron | 40.0% | |
| CGTATTTGACCCTACTTAGT+GGG | - | chr8_1:42402882-42402901 | Msa1194850:intron | 40.0% | |
| ! | CAAGTCTTATCCCACTAAGT+AGG | + | chr8_1:42402895-42402914 | None:intergenic | 40.0% |
| CTACTTAGTGGGATAAGACT+TGG | - | chr8_1:42402893-42402912 | Msa1194850:intron | 40.0% | |
| TGAACTTTGCTGATCCTTGA+CGG | + | chr8_1:42402983-42403002 | None:intergenic | 40.0% | |
| GGCCTTTCTATAAACAACCT+AGG | + | chr8_1:42403036-42403055 | None:intergenic | 40.0% | |
| ACTTCTGAGTGATTCACCAT+TGG | - | chr8_1:42403103-42403122 | Msa1194850:CDS | 40.0% | |
| TCACTCAAAGACGATGACTT+TGG | - | chr8_1:42403136-42403155 | Msa1194850:intron | 40.0% | |
| GTGGCACACAATGATAAAGA+TGG | - | chr8_1:42403264-42403283 | Msa1194850:intron | 40.0% | |
| ATAAAGATGGCATTGCAGCA+GGG | - | chr8_1:42403277-42403296 | Msa1194850:intron | 40.0% | |
| CTAGATAGATCACTTGGTCA+TGG | + | chr8_1:42403599-42403618 | None:intergenic | 40.0% | |
| CATGACCAAGTGATCTATCT+AGG | - | chr8_1:42403597-42403616 | Msa1194850:intron | 40.0% | |
| CGAGCATTTGCATTATTCAG+AGG | - | chr8_1:42403620-42403639 | Msa1194850:intron | 40.0% | |
| AGGTCAAGCTTTCAATTGCA+TGG | - | chr8_1:42403640-42403659 | Msa1194850:intron | 40.0% | |
| GGTCAAGCTTTCAATTGCAT+GGG | - | chr8_1:42403641-42403660 | Msa1194850:intron | 40.0% | |
| GTCAAGCTTTCAATTGCATG+GGG | - | chr8_1:42403642-42403661 | Msa1194850:intron | 40.0% | |
| TCAAGCTTTCAATTGCATGG+GGG | - | chr8_1:42403643-42403662 | Msa1194850:intron | 40.0% | |
| !! | GCATATGTGCTAATTTGCTC+TGG | - | chr8_1:42403821-42403840 | Msa1194850:CDS | 40.0% |
| TGCTGTACAAAATCTGTTGC+AGG | - | chr8_1:42403854-42403873 | Msa1194850:CDS | 40.0% | |
| AAAATCTGTTGCAGGTACCT+GGG | - | chr8_1:42403862-42403881 | Msa1194850:CDS | 40.0% | |
| ! | CAATCTTGTTTAGACTTCCC+AGG | + | chr8_1:42403882-42403901 | None:intergenic | 40.0% |
| AGTAAACTGCTCATACCTAC+TGG | - | chr8_1:42404008-42404027 | Msa1194850:CDS | 40.0% | |
| TTCTGAGTAACGATGCTCTT+TGG | + | chr8_1:42404065-42404084 | None:intergenic | 40.0% | |
| GGAGTACAAAGTTCTTCACT+AGG | + | chr8_1:42404197-42404216 | None:intergenic | 40.0% | |
| TTGTACTCCCAAGCAACAAA+AGG | - | chr8_1:42404208-42404227 | Msa1194850:five_prime_UTR | 40.0% | |
| TCTAGATTTAGTGGCTCATC+AGG | - | chr8_1:42404299-42404318 | Msa1194850:five_prime_UTR | 40.0% | |
| TTTACTTGCTTTAGCACAGG+TGG | + | chr8_1:42404344-42404363 | None:intergenic | 40.0% | |
| GACGATTCTACTGAACAGAG+AGG | + | chr8_1:42401248-42401267 | None:intergenic | 45.0% | |
| !!! | TTGTGGGGCTGTTGTTTTGA+TGG | + | chr8_1:42401362-42401381 | None:intergenic | 45.0% |
| !! | GTTAGTGGATTTGGGTTGTG+GGG | + | chr8_1:42401377-42401396 | None:intergenic | 45.0% |
| !! | CCGGGTTGAAGATTTGTTAG+TGG | + | chr8_1:42401392-42401411 | None:intergenic | 45.0% |
| !!! | AACGGTTTTGGATCTTGACC+GGG | + | chr8_1:42401410-42401429 | None:intergenic | 45.0% |
| GGTCAAGATCCAAAACCGTT+AGG | - | chr8_1:42401410-42401429 | Msa1194850:CDS | 45.0% | |
| GGGAAGAAGGAAGAGATTGA+AGG | - | chr8_1:42401608-42401627 | Msa1194850:CDS | 45.0% | |
| GAGATTGAAGGTGGAGAAGA+AGG | - | chr8_1:42401620-42401639 | Msa1194850:CDS | 45.0% | |
| AAGGTGGAGAAGAAGGGAAA+AGG | - | chr8_1:42401627-42401646 | Msa1194850:CDS | 45.0% | |
| GTGAAAAGGAAGAGAAAGCG+CGG | - | chr8_1:42401707-42401726 | Msa1194850:CDS | 45.0% | |
| !! | ACAAGAATTGGCTCTGCGAA+CGG | - | chr8_1:42401763-42401782 | Msa1194850:intron | 45.0% |
| CAAAGCCTAGTCCACATTTC+TGG | - | chr8_1:42401798-42401817 | Msa1194850:intron | 45.0% | |
| TCTCAGGAGAGTCAAAACAC+AGG | - | chr8_1:42402257-42402276 | Msa1194850:intron | 45.0% | |
| CGATGCTGCACACAATGATA+AGG | - | chr8_1:42402488-42402507 | Msa1194850:intron | 45.0% | |
| GCTGCACACAATGATAAGGA+AGG | - | chr8_1:42402492-42402511 | Msa1194850:intron | 45.0% | |
| GATAAGGAAGGAATTGCAGC+AGG | - | chr8_1:42402504-42402523 | Msa1194850:intron | 45.0% | |
| CATTGCATCAGGGTTTACAG+TGG | - | chr8_1:42402618-42402637 | Msa1194850:intron | 45.0% | |
| GAACTTTGCTGATCCTTGAC+GGG | + | chr8_1:42402982-42403001 | None:intergenic | 45.0% | |
| ATAGCTGGATCATGTGTCCT+AGG | - | chr8_1:42403016-42403035 | Msa1194850:intron | 45.0% | |
| GTTTATAGAAAGGCCCTGTC+CGG | - | chr8_1:42403041-42403060 | Msa1194850:intron | 45.0% | |
| !! | GAGTGAATCTTTAGGGCCAA+TGG | + | chr8_1:42403122-42403141 | None:intergenic | 45.0% |
| GATAAAGATGGCATTGCAGC+AGG | - | chr8_1:42403276-42403295 | Msa1194850:intron | 45.0% | |
| CAAGCTTTCAATTGCATGGG+GGG | - | chr8_1:42403644-42403663 | Msa1194850:intron | 45.0% | |
| CAAAATCTGTTGCAGGTACC+TGG | - | chr8_1:42403861-42403880 | Msa1194850:CDS | 45.0% | |
| TCAATGTCAGCCTCGATCAA+GGG | - | chr8_1:42403938-42403957 | Msa1194850:CDS | 45.0% | |
| GCTCATACCTACTGGAAAGA+AGG | - | chr8_1:42404016-42404035 | Msa1194850:CDS | 45.0% | |
| ATACCTACTGGAAAGAAGGC+CGG | - | chr8_1:42404020-42404039 | Msa1194850:CDS | 45.0% | |
| TAGAAGCTGCTCTTCTCCTA+AGG | + | chr8_1:42404415-42404434 | None:intergenic | 45.0% | |
| ! | ACTAGTCTCGGTGATCTTCG+CGG | + | chr8_1:42401333-42401352 | None:intergenic | 50.0% |
| !! | TGATGGAGGAGCACTAGTCT+CGG | + | chr8_1:42401345-42401364 | None:intergenic | 50.0% |
| !!! | TGGGGCTGTTGTTTTGATGG+AGG | + | chr8_1:42401359-42401378 | None:intergenic | 50.0% |
| TTCATGTGACGAGGGAGTTG+TGG | - | chr8_1:42401526-42401545 | Msa1194850:CDS | 50.0% | |
| ! | AAAAGGAGAAGAAAGCGCGG+TGG | - | chr8_1:42401563-42401582 | Msa1194850:CDS | 50.0% |
| GTGGCGATGGAATTGAGGAA+GGG | - | chr8_1:42401585-42401604 | Msa1194850:CDS | 50.0% | |
| TGGCGATGGAATTGAGGAAG+GGG | - | chr8_1:42401586-42401605 | Msa1194850:CDS | 50.0% | |
| AATTGAGGAAGGGGGGAAGA+AGG | - | chr8_1:42401595-42401614 | Msa1194850:CDS | 50.0% | |
| ! | GAAGGGAAAAGGAAGCACGA+TGG | - | chr8_1:42401638-42401657 | Msa1194850:CDS | 50.0% |
| ! | GCACGATGGTGGTGAAATAG+TGG | - | chr8_1:42401652-42401671 | Msa1194850:CDS | 50.0% |
| ! | AAAAGGAAGAGAAAGCGCGG+TGG | - | chr8_1:42401710-42401729 | Msa1194850:CDS | 50.0% |
| ! | GTGGTGGTGAAGTTGCACAA+GGG | - | chr8_1:42401729-42401748 | Msa1194850:CDS | 50.0% |
| !! | AGTTGCACAAGGGTGGACTA+AGG | - | chr8_1:42401739-42401758 | Msa1194850:intron | 50.0% |
| AATTGCAGCAGGGCTTACAG+CGG | - | chr8_1:42402515-42402534 | Msa1194850:intron | 50.0% | |
| TAGAGTCGCACATAGTGTGG+TGG | - | chr8_1:42402538-42402557 | Msa1194850:intron | 50.0% | |
| GCATACTATGGAACCCGTCA+AGG | - | chr8_1:42402966-42402985 | Msa1194850:intron | 50.0% | |
| ACTAATCCGCTCTGACTCTC+CGG | + | chr8_1:42403063-42403082 | None:intergenic | 50.0% | |
| TGCGGTTGCTGTAGAACTGT+TGG | - | chr8_1:42403325-42403344 | Msa1194850:intron | 50.0% | |
| GCTCGCCTAGATAGATCACT+TGG | + | chr8_1:42403605-42403624 | None:intergenic | 50.0% | |
| CTTGATCGAGGCTGACATTG+AGG | + | chr8_1:42403939-42403958 | None:intergenic | 50.0% | |
| CTCAATGTCAGCCTCGATCA+AGG | - | chr8_1:42403937-42403956 | Msa1194850:CDS | 50.0% | |
| ATTGCCTTTGCCCTTGATCG+AGG | + | chr8_1:42403951-42403970 | None:intergenic | 50.0% | |
| GGAGAAGAGCAGCTTCTACA+CGG | - | chr8_1:42404417-42404436 | Msa1194850:five_prime_UTR | 50.0% | |
| GAGAAGAGCAGCTTCTACAC+GGG | - | chr8_1:42404418-42404437 | Msa1194850:five_prime_UTR | 50.0% | |
| TAGTCTCGGTGATCTTCGCG+GGG | + | chr8_1:42401331-42401350 | None:intergenic | 55.0% | |
| CTAGTCTCGGTGATCTTCGC+GGG | + | chr8_1:42401332-42401351 | None:intergenic | 55.0% | |
| GACGAGGGAGTTGTGGTTGA+AGG | - | chr8_1:42401533-42401552 | Msa1194850:CDS | 55.0% | |
| GAGGGAGTTGTGGTTGAAGG+TGG | - | chr8_1:42401536-42401555 | Msa1194850:CDS | 55.0% | |
| GGTGGCGATGGAATTGAGGA+AGG | - | chr8_1:42401584-42401603 | Msa1194850:CDS | 55.0% | |
| GGCGATGGAATTGAGGAAGG+GGG | - | chr8_1:42401587-42401606 | Msa1194850:CDS | 55.0% | |
| GCGATGGAATTGAGGAAGGG+GGG | - | chr8_1:42401588-42401607 | Msa1194850:CDS | 55.0% | |
| ! | GGGAAAAGGAAGCACGATGG+TGG | - | chr8_1:42401641-42401660 | Msa1194850:CDS | 55.0% |
| ! | GGTGGTGGTGAAGTTGCACA+AGG | - | chr8_1:42401728-42401747 | Msa1194850:CDS | 55.0% |
| GTGGTGAAGTTGCACAAGGG+TGG | - | chr8_1:42401732-42401751 | Msa1194850:CDS | 55.0% | |
| CATTGTGTGCAGCATCGCAG+TGG | + | chr8_1:42402485-42402504 | None:intergenic | 55.0% | |
| CGGTAGAGTCGCACATAGTG+TGG | - | chr8_1:42402535-42402554 | Msa1194850:intron | 55.0% | |
| CATTGTGTGCCACATCGCAG+CGG | + | chr8_1:42403257-42403276 | None:intergenic | 55.0% | |
| CATTGCAGCAGGGCTTACAG+TGG | - | chr8_1:42403287-42403306 | Msa1194850:intron | 55.0% | |
| TGGTAGAGCTGCACAGAGTG+CGG | - | chr8_1:42403307-42403326 | Msa1194850:intron | 55.0% | |
| GCTGACATTGAGGTGGTGTG+TGG | + | chr8_1:42403929-42403948 | None:intergenic | 55.0% | |
| GATCGAGGCTGACATTGAGG+TGG | + | chr8_1:42403936-42403955 | None:intergenic | 55.0% | |
| TCAGCCTCGATCAAGGGCAA+AGG | - | chr8_1:42403944-42403963 | Msa1194850:CDS | 55.0% | |
| TTGCCGGCCTTCTTTCCAGT+AGG | + | chr8_1:42404026-42404045 | None:intergenic | 55.0% | |
| ! | AGGAGAAGAAAGCGCGGTGG+TGG | - | chr8_1:42401566-42401585 | Msa1194850:CDS | 60.0% |
| ! | CGGTGGTGGCGATGGAATTG+AGG | - | chr8_1:42401580-42401599 | Msa1194850:CDS | 60.0% |
| ! | AGGAAGAGAAAGCGCGGTGG+TGG | - | chr8_1:42401713-42401732 | Msa1194850:CDS | 60.0% |
| TGTGTGCAGCATCGCAGTGG+CGG | + | chr8_1:42402482-42402501 | None:intergenic | 60.0% | |
| GAGGTGGTGTGTGGAAGTCG+TGG | + | chr8_1:42403920-42403939 | None:intergenic | 60.0% | |
| CAGGTGGGTACACGACGGTG+GGG | + | chr8_1:42401305-42401324 | None:intergenic | 65.0% | |
| CCAGGTGGGTACACGACGGT+GGG | + | chr8_1:42401306-42401325 | None:intergenic | 65.0% | |
| GGTGCCAGGTGGGTACACGA+CGG | + | chr8_1:42401310-42401329 | None:intergenic | 65.0% | |
| ! | ATCTTCGCGGGGTGCCAGGT+GGG | + | chr8_1:42401320-42401339 | None:intergenic | 65.0% |
| ! | AGAAAGCGCGGTGGTGGCGA+TGG | - | chr8_1:42401572-42401591 | Msa1194850:CDS | 65.0% |
| CCGCTCTGACTCTCCGGACA+GGG | + | chr8_1:42403057-42403076 | None:intergenic | 65.0% | |
| CCCTGTCCGGAGAGTCAGAG+CGG | - | chr8_1:42403054-42403073 | Msa1194850:intron | 65.0% | |
| TCCGCTCTGACTCTCCGGAC+AGG | + | chr8_1:42403058-42403077 | None:intergenic | 65.0% | |
| ACAGTCCAGCCGCTGCGATG+TGG | - | chr8_1:42403245-42403264 | Msa1194850:intron | 65.0% | |
| CCCACCGTCGTGTACCCACC+TGG | - | chr8_1:42401303-42401322 | Msa1194850:CDS | 70.0% | |
| GCCAGGTGGGTACACGACGG+TGG | + | chr8_1:42401307-42401326 | None:intergenic | 70.0% | |
| ! | GATCTTCGCGGGGTGCCAGG+TGG | + | chr8_1:42401321-42401340 | None:intergenic | 70.0% |
| ! | GGTGATCTTCGCGGGGTGCC+AGG | + | chr8_1:42401324-42401343 | None:intergenic | 70.0% |
| GTGTGCCACATCGCAGCGGC+TGG | + | chr8_1:42403253-42403272 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 42401155 | 42404472 | 42401155 | ID=Msa1194850;Name=Msa1194850 |
| chr8_1 | mRNA | 42401155 | 42404472 | 42401155 | ID=Msa1194850-mRNA-1;Parent=Msa1194850;Name=Msa1194850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=303|0|0.25|0.5|1|1|4|0|370 |
| chr8_1 | exon | 42401155 | 42401751 | 42401155 | ID=Msa1194850-mRNA-1:exon:13697;Parent=Msa1194850-mRNA-1 |
| chr8_1 | exon | 42402304 | 42402378 | 42402304 | ID=Msa1194850-mRNA-1:exon:13696;Parent=Msa1194850-mRNA-1 |
| chr8_1 | exon | 42403091 | 42403150 | 42403091 | ID=Msa1194850-mRNA-1:exon:13695;Parent=Msa1194850-mRNA-1 |
| chr8_1 | exon | 42403789 | 42404472 | 42403789 | ID=Msa1194850-mRNA-1:exon:13694;Parent=Msa1194850-mRNA-1 |
| chr8_1 | five_prime_UTR | 42404170 | 42404472 | 42404170 | ID=Msa1194850-mRNA-1:five_prime_utr;Parent=Msa1194850-mRNA-1 |
| chr8_1 | CDS | 42403789 | 42404169 | 42403789 | ID=Msa1194850-mRNA-1:cds;Parent=Msa1194850-mRNA-1 |
| chr8_1 | CDS | 42403091 | 42403150 | 42403091 | ID=Msa1194850-mRNA-1:cds;Parent=Msa1194850-mRNA-1 |
| chr8_1 | CDS | 42402304 | 42402378 | 42402304 | ID=Msa1194850-mRNA-1:cds;Parent=Msa1194850-mRNA-1 |
| chr8_1 | CDS | 42401155 | 42401751 | 42401155 | ID=Msa1194850-mRNA-1:cds;Parent=Msa1194850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
