Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248490 | XP_003623905.2 | 84.656 | 378 | 12 | 2 | 84 | 460 | 108 | 440 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248490 | G7L3K3 | 84.656 | 378 | 12 | 2 | 84 | 460 | 108 | 440 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1248490 | Msa1248510 | 0.914652 | 1.491344e-84 | -8.615850e-47 |
| Msa1194850 | Msa1248490 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248490 | MtrunA17_Chr7g0247241 | 84.656 | 378 | 12 | 2 | 84 | 460 | 108 | 440 | 0.0 | 629 |
| Msa1248490 | MtrunA17_Chr5g0411521 | 78.632 | 351 | 25 | 2 | 110 | 460 | 176 | 476 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248490 | AT3G53440.2 | 34.808 | 339 | 139 | 8 | 118 | 449 | 249 | 512 | 7.47e-40 | 150 |
| Msa1248490 | AT3G53440.1 | 34.808 | 339 | 139 | 8 | 118 | 449 | 249 | 512 | 7.47e-40 | 150 |
Find 125 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATCAATTAAGATTT+AGG | 0.116714 | 8_2:+42568529 | Msa1248490:CDS |
| TGTCACCCATGAAATTAATT+TGG | 0.142306 | 8_2:-42568698 | None:intergenic |
| TGAGATAGAGGTGGTGGTTT+TGG | 0.198282 | 8_2:-42565425 | None:intergenic |
| CAAAGCCTAGTCCACATTTC+TGG | 0.233776 | 8_2:+42565942 | Msa1248490:CDS |
| CCAGAGAAACGTGGTTATTA+TGG | 0.269822 | 8_2:-42565376 | None:intergenic |
| TGTCAATCAATTAAGATTTA+GGG | 0.297311 | 8_2:+42568530 | Msa1248490:CDS |
| CTGGAACAACGTTTCGAAAC+TGG | 0.311123 | 8_2:+42565961 | Msa1248490:CDS |
| TTTGAGAATATTTGATTTGC+CGG | 0.323852 | 8_2:-42568181 | None:intergenic |
| GTCACCCATGAAATTAATTT+GGG | 0.329644 | 8_2:-42568697 | None:intergenic |
| GCAATCCCAAATTAATTTCA+TGG | 0.337600 | 8_2:+42568692 | Msa1248490:CDS |
| TTCTGAGTAACGATGCTCTT+TGG | 0.337740 | 8_2:-42568204 | None:intergenic |
| AAGTCTCTTTCTAGATTTAG+TGG | 0.343248 | 8_2:+42568432 | Msa1248490:CDS |
| GCCGTATTACAATGGAAGTT+TGG | 0.343591 | 8_2:-42568959 | None:intergenic |
| ATCTCTCATTGCAAATTTGT+AGG | 0.355575 | 8_2:-42568386 | None:intergenic |
| AATACTCAATTCTTCATTCC+AGG | 0.357974 | 8_2:+42565491 | Msa1248490:CDS |
| TGAAAATGAATTGAAGAGTT+GGG | 0.362759 | 8_2:+42563236 | Msa1248490:CDS |
| CAGAAAGAAGATTGAGATAG+AGG | 0.369005 | 8_2:-42565437 | None:intergenic |
| AAAGTTGATCAAAATCATAA+AGG | 0.382393 | 8_2:+42568258 | Msa1248490:CDS |
| CAAAATCTGTTGCAGGTACC+TGG | 0.382661 | 8_2:+42568003 | Msa1248490:intron |
| GAGATTGAAGGTGGAGAAGA+AGG | 0.384382 | 8_2:+42565764 | Msa1248490:CDS |
| TCTAGATTTAGTGGCTCATC+AGG | 0.392797 | 8_2:+42568441 | Msa1248490:CDS |
| AAGTTGATCAAAATCATAAA+GGG | 0.398649 | 8_2:+42568259 | Msa1248490:CDS |
| TGTCATCCTCCTTCATGATT+AGG | 0.399277 | 8_2:+42569108 | Msa1248490:three_prime_UTR |
| TAATGCATTTAGATTAGATT+AGG | 0.403082 | 8_2:+42569001 | Msa1248490:three_prime_UTR |
| TAGGAACTTTCATATGTTGA+TGG | 0.414073 | 8_2:+42569127 | Msa1248490:three_prime_UTR |
| TCCAAACTTCCATTGTAATA+CGG | 0.414199 | 8_2:+42568958 | Msa1248490:three_prime_UTR |
| CCATAATAACCACGTTTCTC+TGG | 0.415989 | 8_2:+42565376 | Msa1248490:CDS |
| AATTAAGATTTAGGGACCTT+AGG | 0.417162 | 8_2:+42568538 | Msa1248490:CDS |
| ATGAAAATGAATTGAAGAGT+TGG | 0.421675 | 8_2:+42563235 | Msa1248490:CDS |
| TTCTTTACTTGCTTTAGCAC+AGG | 0.435819 | 8_2:-42568486 | None:intergenic |
| GATAAAGATGGCATTGCAGC+AGG | 0.438944 | 8_2:+42567422 | Msa1248490:CDS |
| CTCAATGTCAGCCTCGATCA+AGG | 0.439530 | 8_2:+42568079 | Msa1248490:CDS |
| GAAGATTGAGATAGAGGTGG+TGG | 0.443156 | 8_2:-42565431 | None:intergenic |
| GTGGACTAAGGAACAAGAAT+TGG | 0.455229 | 8_2:+42565895 | Msa1248490:CDS |
| AAGGTGGAGAAGAAGGGAAA+AGG | 0.458473 | 8_2:+42565771 | Msa1248490:CDS |
| AATGCTACATCTACAAAACT+TGG | 0.459493 | 8_2:-42568885 | None:intergenic |
| GTTGGAACTCGAACTCGAAC+AGG | 0.464018 | 8_2:-42565462 | None:intergenic |
| GTGTGCCACATCGCAGCGGC+TGG | 0.467254 | 8_2:-42567396 | None:intergenic |
| AGTAAACTGCTCATACCTAC+TGG | 0.476955 | 8_2:+42568150 | Msa1248490:CDS |
| GGAGGATGACACCCTCATCT+TGG | 0.478433 | 8_2:-42569096 | None:intergenic |
| AAGCAACAAAAGGAAAATCA+AGG | 0.484594 | 8_2:+42568360 | Msa1248490:CDS |
| GCACGATGGTTGTGAAATAG+TGG | 0.487049 | 8_2:+42565796 | Msa1248490:CDS |
| TTGAAGAGTTGGGGAGACAA+AGG | 0.488350 | 8_2:+42563246 | Msa1248490:CDS |
| GGGAAGAAGGAAGAGATTGA+AGG | 0.500449 | 8_2:+42565752 | Msa1248490:CDS |
| TAAAGCTGCAAAAGTTGCAT+TGG | 0.501844 | 8_2:+42568635 | Msa1248490:CDS |
| CAATCCCAAATTAATTTCAT+GGG | 0.503408 | 8_2:+42568693 | Msa1248490:CDS |
| TAGAAGCTGCTCTTCTCCTA+AGG | 0.507172 | 8_2:-42568554 | None:intergenic |
| ATACAAAGTTTCAACTCAGA+AGG | 0.508154 | 8_2:+42565728 | Msa1248490:CDS |
| TTGTACTCCCAAGCAACAAA+AGG | 0.508228 | 8_2:+42568350 | Msa1248490:CDS |
| TTTACTTGCTTTAGCACAGG+TGG | 0.511523 | 8_2:-42568483 | None:intergenic |
| CAATCTTGTTTAGACTTCCC+AGG | 0.515115 | 8_2:-42568021 | None:intergenic |
| GATAAGGAAGGAATTGCAGC+AGG | 0.516244 | 8_2:+42566648 | Msa1248490:CDS |
| CGATGCTGCACACAATGATA+AGG | 0.522807 | 8_2:+42566632 | Msa1248490:CDS |
| GACGATGACATTGGAGTTGA+AGG | 0.523720 | 8_2:+42568744 | Msa1248490:CDS |
| AGGAAGAGAAAGCGCGGTGG+TGG | 0.525493 | 8_2:+42565857 | Msa1248490:CDS |
| TACAAAGTTTCAACTCAGAA+GGG | 0.527223 | 8_2:+42565729 | Msa1248490:CDS |
| CAGATATTGAGAATTGATGA+AGG | 0.530440 | 8_2:-42568125 | None:intergenic |
| GAAACGTTGTTCCAGAAATG+TGG | 0.531004 | 8_2:-42565953 | None:intergenic |
| GTGAAATAGTGGAAGAGTTG+AGG | 0.532067 | 8_2:+42565807 | Msa1248490:CDS |
| CTGGAGAAGGAAAAGGCATT+CGG | 0.532131 | 8_2:+42568598 | Msa1248490:CDS |
| AAGAAGGAAGAGATTGAAGG+TGG | 0.534159 | 8_2:+42565755 | Msa1248490:CDS |
| AATAGTGGAAGAGTTGAGGA+AGG | 0.535399 | 8_2:+42565811 | Msa1248490:CDS |
| AGATTGAAGGTGGAGAAGAA+GGG | 0.536092 | 8_2:+42565765 | Msa1248490:CDS |
| GAATTGAGTATTGACAAAGT+TGG | 0.537756 | 8_2:-42565480 | None:intergenic |
| CGGGCAAACAAATCTGTAGC+TGG | 0.538700 | 8_2:+42568579 | Msa1248490:CDS |
| ACAAAGTTTCAACTCAGAAG+GGG | 0.540390 | 8_2:+42565730 | Msa1248490:CDS |
| TTCTCATTGCCGTATTACAA+TGG | 0.543922 | 8_2:-42568967 | None:intergenic |
| GCTCATACCTACTGGAAAGA+AGG | 0.545149 | 8_2:+42568158 | Msa1248490:CDS |
| TCTGTAGCTGGAGAAGGAAA+AGG | 0.546804 | 8_2:+42568591 | Msa1248490:CDS |
| GAAAATGAATTGAAGAGTTG+GGG | 0.547463 | 8_2:+42563237 | Msa1248490:CDS |
| ATTAGCTCGAGAAGAGCCTA+TGG | 0.552268 | 8_2:-42568774 | None:intergenic |
| TTGTTCCAGAAATGTGGACT+AGG | 0.553064 | 8_2:-42565947 | None:intergenic |
| ATGAAAGTTCCTAATCATGA+AGG | 0.556304 | 8_2:-42569117 | None:intergenic |
| AACAAATCTGTAGCTGGAGA+AGG | 0.559128 | 8_2:+42568585 | Msa1248490:CDS |
| GAGAAGAGCAGCTTCTACAC+GGG | 0.570089 | 8_2:+42568560 | Msa1248490:CDS |
| TGTGTGCAGCATCGCAGTGG+CGG | 0.573460 | 8_2:-42566623 | None:intergenic |
| ACAAGAATTGGCTCTGCGAA+CGG | 0.574620 | 8_2:+42565907 | Msa1248490:CDS |
| AAGTTGAATGTGGTGTGAAA+AGG | 0.575392 | 8_2:+42565837 | Msa1248490:CDS |
| CTTGATCGAGGCTGACATTG+AGG | 0.576306 | 8_2:-42568078 | None:intergenic |
| AAAGAAGATTGAGATAGAGG+TGG | 0.577467 | 8_2:-42565434 | None:intergenic |
| ATTGCCTTTGCCCTTGATCG+AGG | 0.578198 | 8_2:-42568090 | None:intergenic |
| TAATTGTCTTGTATCCGTCT+AGG | 0.580348 | 8_2:+42569038 | Msa1248490:three_prime_UTR |
| GAGGACAATGACGATGACAT+TGG | 0.581558 | 8_2:+42568735 | Msa1248490:CDS |
| TCAATGTCAGCCTCGATCAA+GGG | 0.581679 | 8_2:+42568080 | Msa1248490:CDS |
| ATACCTACTGGAAAGAAGGC+CGG | 0.585107 | 8_2:+42568162 | Msa1248490:CDS |
| TTGCCGGCCTTCTTTCCAGT+AGG | 0.585999 | 8_2:-42568165 | None:intergenic |
| AGTTGCACAAGGGTGGACTA+AGG | 0.587210 | 8_2:+42565883 | Msa1248490:CDS |
| AAAATCTGTTGCAGGTACCT+GGG | 0.591061 | 8_2:+42568004 | Msa1248490:intron |
| GTGGCACACAATGATAAAGA+TGG | 0.592029 | 8_2:+42567410 | Msa1248490:CDS |
| GGAGTACAAAGTTCTTCACT+AGG | 0.595502 | 8_2:-42568336 | None:intergenic |
| GGAGAAGAGCAGCTTCTACA+CGG | 0.597341 | 8_2:+42568559 | Msa1248490:CDS |
| CAAAGTTTCAACTCAGAAGG+GGG | 0.603686 | 8_2:+42565731 | Msa1248490:CDS |
| ATGCTACATCTACAAAACTT+GGG | 0.608771 | 8_2:-42568884 | None:intergenic |
| ACAGTCCAGCCGCTGCGATG+TGG | 0.609578 | 8_2:+42567391 | Msa1248490:intron |
| TCAGCCTCGATCAAGGGCAA+AGG | 0.617327 | 8_2:+42568086 | Msa1248490:CDS |
| AGTTGAAGGTGAAAGTCCAT+AGG | 0.620306 | 8_2:+42568758 | Msa1248490:CDS |
| GCTGACATTGAGGCGGTGTG+TGG | 0.627749 | 8_2:-42568068 | None:intergenic |
| AGATATTGAGAATTGATGAA+GGG | 0.632083 | 8_2:-42568124 | None:intergenic |
| GGTGGTGGTGAAGTTGCACA+AGG | 0.634091 | 8_2:+42565872 | Msa1248490:CDS |
| AGCAACAAAAGGAAAATCAA+GGG | 0.634134 | 8_2:+42568361 | Msa1248490:CDS |
| GGAGACAAAGGAAGAAGCAG+AGG | 0.635523 | 8_2:+42563258 | Msa1248490:CDS |
| TTTCAAGCAAAGTACCTAGA+CGG | 0.635626 | 8_2:-42569052 | None:intergenic |
| AAAGTTCCTAATCATGAAGG+AGG | 0.640278 | 8_2:-42569114 | None:intergenic |
| GCTGCACACAATGATAAGGA+AGG | 0.641647 | 8_2:+42566636 | Msa1248490:CDS |
| AGTTGATCAAAATCATAAAG+GGG | 0.648404 | 8_2:+42568260 | Msa1248490:CDS |
| CATTGTGTGCAGCATCGCAG+TGG | 0.649922 | 8_2:-42566626 | None:intergenic |
| GAGGCGGTGTGTGGAAGTCG+TGG | 0.653348 | 8_2:-42568059 | None:intergenic |
| GTGGTGAAGTTGCACAAGGG+TGG | 0.656463 | 8_2:+42565876 | Msa1248490:CDS |
| GATATTGAGAATTGATGAAG+GGG | 0.662180 | 8_2:-42568123 | None:intergenic |
| ATAAAGATGGCATTGCAGCA+GGG | 0.670627 | 8_2:+42567423 | Msa1248490:CDS |
| AGGAAGGAAGAAGTTGAATG+TGG | 0.671131 | 8_2:+42565827 | Msa1248490:CDS |
| GCTTGAAATATAGATCACGA+TGG | 0.676012 | 8_2:+42569067 | Msa1248490:three_prime_UTR |
| CATTGTGTGCCACATCGCAG+CGG | 0.677890 | 8_2:-42567400 | None:intergenic |
| GATCGAGGCTGACATTGAGG+CGG | 0.679033 | 8_2:-42568075 | None:intergenic |
| CATTGCAGCAGGGCTTACAG+TGG | 0.693165 | 8_2:+42567433 | Msa1248490:CDS |
| ATAAGGAAGGAATTGCAGCA+GGG | 0.695488 | 8_2:+42566649 | Msa1248490:CDS |
| AAAGTTTCAACTCAGAAGGG+GGG | 0.695511 | 8_2:+42565732 | Msa1248490:CDS |
| GTGGTGGTGAAGTTGCACAA+GGG | 0.698386 | 8_2:+42565873 | Msa1248490:CDS |
| GTGAAAAGGAAGAGAAAGCG+CGG | 0.698757 | 8_2:+42565851 | Msa1248490:CDS |
| GCTAAAGCAAGTAAAGAACA+AGG | 0.708807 | 8_2:+42568491 | Msa1248490:CDS |
| ATGAAAGAACCAGAGAAACG+TGG | 0.712836 | 8_2:-42565385 | None:intergenic |
| TGACAGTTGTAGTTCTGACG+AGG | 0.717971 | 8_2:+42568716 | Msa1248490:CDS |
| AATTGCAGCAGGGCTTACAG+CGG | 0.735043 | 8_2:+42566659 | Msa1248490:CDS |
| GAAGGGAAAAGGAAGCACGA+TGG | 0.741513 | 8_2:+42565782 | Msa1248490:CDS |
| AAAAGGAAGAGAAAGCGCGG+TGG | 0.749477 | 8_2:+42565854 | Msa1248490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTAAAATATTTTTTGTAT+AGG | + | chr8_2:42563522-42563541 | Msa1248490:intron | 10.0% |
| !!! | TTTTTTTCTTCTTATAATTT+AGG | + | chr8_2:42565190-42565209 | Msa1248490:intron | 10.0% |
| !!! | ATTTTTCATATTTTTGTTTT+AGG | + | chr8_2:42565560-42565579 | Msa1248490:intron | 10.0% |
| !!! | TTTTTCATATTTTTGTTTTA+GGG | + | chr8_2:42565561-42565580 | Msa1248490:intron | 10.0% |
| !! | AATATATAACATATTGTTTA+TGG | + | chr8_2:42566989-42567008 | Msa1248490:intron | 10.0% |
| !!! | ATAAAATTATAATTTGTTGA+TGG | + | chr8_2:42567919-42567938 | Msa1248490:intron | 10.0% |
| !!! | TTTTATCAAAGAAAATGTAA+TGG | - | chr8_2:42563421-42563440 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTGATAAAACAAA+GGG | + | chr8_2:42563425-42563444 | Msa1248490:intron | 15.0% |
| !! | TATCCTTCAAAAAAAAAAAA+AGG | + | chr8_2:42563460-42563479 | Msa1248490:intron | 15.0% |
| !! | ATCCTTCAAAAAAAAAAAAA+GGG | + | chr8_2:42563461-42563480 | Msa1248490:intron | 15.0% |
| !!! | TTTTTTTGTCCTAAATTATA+AGG | - | chr8_2:42565161-42565180 | None:intergenic | 15.0% |
| !!! | ATAAAAGGAAAAAACTTTTT+AGG | + | chr8_2:42565242-42565261 | Msa1248490:intron | 15.0% |
| !! | GGAATAGAAGAAATTAAAAT+AGG | + | chr8_2:42563305-42563324 | Msa1248490:intron | 20.0% |
| !! | AAGAAATTAAAATAGGATGA+TGG | + | chr8_2:42563312-42563331 | Msa1248490:intron | 20.0% |
| !!! | CATTTTCTTTGATAAAACAA+AGG | + | chr8_2:42563424-42563443 | Msa1248490:intron | 20.0% |
| !!! | AAAACTCCTATTTTTTGTAT+AGG | + | chr8_2:42563612-42563631 | Msa1248490:intron | 20.0% |
| !!! | AAACTCCTATTTTTTGTATA+GGG | + | chr8_2:42563613-42563632 | Msa1248490:intron | 20.0% |
| !!! | AGAGTATTATTATCATATGT+GGG | - | chr8_2:42563973-42563992 | None:intergenic | 20.0% |
| !!! | ATCATTCCTTATTTTGTATA+GGG | - | chr8_2:42564066-42564085 | None:intergenic | 20.0% |
| !!! | TATCATTCCTTATTTTGTAT+AGG | - | chr8_2:42564067-42564086 | None:intergenic | 20.0% |
| !! | ATAACTGTAACATACAAAAT+TGG | + | chr8_2:42564286-42564305 | Msa1248490:intron | 20.0% |
| !! | AAATATATGAGATTTCTTCA+TGG | - | chr8_2:42564962-42564981 | None:intergenic | 20.0% |
| !!! | ACACTTATTTTAACAAAATG+CGG | - | chr8_2:42565069-42565088 | None:intergenic | 20.0% |
| !!! | CGTACCTTATTTTTTATAAT+TGG | + | chr8_2:42565127-42565146 | Msa1248490:intron | 20.0% |
| !! | AGGACCAATTATAAAAAATA+AGG | - | chr8_2:42565134-42565153 | None:intergenic | 20.0% |
| !! | TTTCTTCTTATAATTTAGGA+TGG | + | chr8_2:42565194-42565213 | Msa1248490:intron | 20.0% |
| !!! | TAAAAGTGCTAATAATATCT+TGG | + | chr8_2:42565298-42565317 | Msa1248490:intron | 20.0% |
| !!! | TTTGTAGTTTTAATCTGAAA+AGG | + | chr8_2:42565604-42565623 | Msa1248490:intron | 20.0% |
| !!! | TTGTAGTTTTAATCTGAAAA+GGG | + | chr8_2:42565605-42565624 | Msa1248490:intron | 20.0% |
| !! | TGAGAAACTATTAAGATTAA+TGG | + | chr8_2:42566134-42566153 | Msa1248490:intron | 20.0% |
| !! | GAGAAACTATTAAGATTAAT+GGG | + | chr8_2:42566135-42566154 | Msa1248490:intron | 20.0% |
| !! | GAAAAACAACTATAAAACAA+TGG | - | chr8_2:42566554-42566573 | None:intergenic | 20.0% |
| !!! | TATAGTTGTTTTTCAATGTT+AGG | + | chr8_2:42566560-42566579 | Msa1248490:intron | 20.0% |
| !! | AATTATAGTGTTTAATCCAA+TGG | + | chr8_2:42566727-42566746 | Msa1248490:intron | 20.0% |
| !! | ATTTCTCATATAGTATTTCT+AGG | - | chr8_2:42566927-42566946 | None:intergenic | 20.0% |
| !! | TATATTTAACAGTTACCTTT+AGG | - | chr8_2:42567619-42567638 | None:intergenic | 20.0% |
| !! | ATTTCATAAAGATGTATGAA+TGG | - | chr8_2:42567827-42567846 | None:intergenic | 20.0% |
| !!! | TATTACAATTTTCTTTGTGA+TGG | - | chr8_2:42567902-42567921 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCAAAATCATAA+AGG | + | chr8_2:42568258-42568277 | Msa1248490:CDS | 20.0% |
| !!! | AAGTTGATCAAAATCATAAA+GGG | + | chr8_2:42568259-42568278 | Msa1248490:CDS | 20.0% |
| !! | TTAGTAGAAAAATCAATGTT+GGG | - | chr8_2:42568306-42568325 | None:intergenic | 20.0% |
| !! | ATTAGTAGAAAAATCAATGT+TGG | - | chr8_2:42568307-42568326 | None:intergenic | 20.0% |
| !! | ATGTCAATCAATTAAGATTT+AGG | + | chr8_2:42568529-42568548 | Msa1248490:CDS | 20.0% |
| !! | TGTCAATCAATTAAGATTTA+GGG | + | chr8_2:42568530-42568549 | Msa1248490:CDS | 20.0% |
| !! | TAATGCATTTAGATTAGATT+AGG | + | chr8_2:42569001-42569020 | Msa1248490:three_prime_UTR | 20.0% |
| ! | ATGAAAATGAATTGAAGAGT+TGG | + | chr8_2:42563235-42563254 | Msa1248490:CDS | 25.0% |
| ! | TGAAAATGAATTGAAGAGTT+GGG | + | chr8_2:42563236-42563255 | Msa1248490:CDS | 25.0% |
| !! | AATTAAAATAGGATGATGGT+TGG | + | chr8_2:42563316-42563335 | Msa1248490:intron | 25.0% |
| ! | GATATTTGAAAAGGGTTTAA+GGG | + | chr8_2:42563338-42563357 | Msa1248490:intron | 25.0% |
| !!! | TAAGGGCATTTTTGTTAAAT+TGG | + | chr8_2:42563355-42563374 | Msa1248490:intron | 25.0% |
| !!! | TGCCCTTTTTTTTTTTTTGA+AGG | - | chr8_2:42563466-42563485 | None:intergenic | 25.0% |
| ! | TTCGATCCTATTTATAACTT+CGG | + | chr8_2:42563584-42563603 | Msa1248490:intron | 25.0% |
| !! | AGAGTATTATTTATCATGTG+GGG | - | chr8_2:42563917-42563936 | None:intergenic | 25.0% |
| !! | CAGAGTATTATTTATCATGT+GGG | - | chr8_2:42563918-42563937 | None:intergenic | 25.0% |
| !! | TCAGAGTATTATTTATCATG+TGG | - | chr8_2:42563919-42563938 | None:intergenic | 25.0% |
| ! | AGTATTATTATCATATGTGG+GGG | - | chr8_2:42563971-42563990 | None:intergenic | 25.0% |
| ! | GAGTATTATTATCATATGTG+GGG | - | chr8_2:42563972-42563991 | None:intergenic | 25.0% |
| !! | CAGAGTATTATTATCATATG+TGG | - | chr8_2:42563974-42563993 | None:intergenic | 25.0% |
| ! | CACATATGATAATAATACTC+TGG | + | chr8_2:42563972-42563991 | Msa1248490:intron | 25.0% |
| ! | CAAAATAAGGAATGATATCA+TGG | + | chr8_2:42564070-42564089 | Msa1248490:intron | 25.0% |
| !!! | TACTGTTTTTCAACCTTTTA+TGG | - | chr8_2:42564098-42564117 | None:intergenic | 25.0% |
| ! | TGCAATAAGTTATGTTTCAA+AGG | + | chr8_2:42564238-42564257 | Msa1248490:intron | 25.0% |
| ! | GTTACAGTTATTCTATCATA+TGG | - | chr8_2:42564277-42564296 | None:intergenic | 25.0% |
| !!! | CTGTTTTAAAATCTGCATAT+TGG | - | chr8_2:42564345-42564364 | None:intergenic | 25.0% |
| !! | ACAGAATTCATGTTTGAAAT+TGG | + | chr8_2:42564361-42564380 | Msa1248490:intron | 25.0% |
| !! | CAAATAGTTTGCAAAATATG+CGG | - | chr8_2:42564580-42564599 | None:intergenic | 25.0% |
| ! | ACTATTTGATCTGAATCTAA+CGG | + | chr8_2:42564592-42564611 | Msa1248490:intron | 25.0% |
| ! | TTCTGCAATTTAATGATTCT+TGG | + | chr8_2:42564735-42564754 | Msa1248490:intron | 25.0% |
| ! | ATAATACAAACCTAACAAAC+TGG | - | chr8_2:42565038-42565057 | None:intergenic | 25.0% |
| !! | GTCCTTTTTCCTTATAATTT+AGG | + | chr8_2:42565149-42565168 | Msa1248490:intron | 25.0% |
| ! | GTCCTAAATTATAAGGAAAA+AGG | - | chr8_2:42565154-42565173 | None:intergenic | 25.0% |
| !! | TTCTTATAATTTAGGATGGA+AGG | + | chr8_2:42565198-42565217 | Msa1248490:intron | 25.0% |
| ! | ATTGAACTCATGGAAATAAA+AGG | + | chr8_2:42565227-42565246 | Msa1248490:intron | 25.0% |
| ! | TAATTGAGTGAAATTGACAA+AGG | - | chr8_2:42565533-42565552 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTAATCTGAAAAG+GGG | + | chr8_2:42565606-42565625 | Msa1248490:intron | 25.0% |
| ! | TATCAATTGCAATAAAACTG+TGG | - | chr8_2:42565702-42565721 | None:intergenic | 25.0% |
| !! | AACTATTAAGATTAATGGGT+TGG | + | chr8_2:42566139-42566158 | Msa1248490:intron | 25.0% |
| ! | TGATATGTGACATCATATTA+TGG | + | chr8_2:42566171-42566190 | Msa1248490:intron | 25.0% |
| ! | AAACCTTATCACACTAAATA+TGG | - | chr8_2:42566220-42566239 | None:intergenic | 25.0% |
| ! | ATATTTAGTGTGATAAGGTT+TGG | + | chr8_2:42566219-42566238 | Msa1248490:intron | 25.0% |
| !! | TTCAGTAAGCTAAATTTGTT+CGG | + | chr8_2:42566268-42566287 | Msa1248490:intron | 25.0% |
| !! | ATTGTGAGATTTGAAATTTC+TGG | + | chr8_2:42566457-42566476 | Msa1248490:intron | 25.0% |
| !! | TTGTGAGATTTGAAATTTCT+GGG | + | chr8_2:42566458-42566477 | Msa1248490:intron | 25.0% |
| !!! | TAATCCAATGGTTTTATAGA+AGG | + | chr8_2:42566739-42566758 | Msa1248490:intron | 25.0% |
| ! | CTATGAAAAATATCTGTAGT+TGG | + | chr8_2:42566823-42566842 | Msa1248490:intron | 25.0% |
| !!! | TCAGTAAGCTAAACTTTTTT+TGG | + | chr8_2:42567088-42567107 | Msa1248490:intron | 25.0% |
| !!! | AAACTTTTTTTGGCATACTA+TGG | + | chr8_2:42567098-42567117 | Msa1248490:intron | 25.0% |
| ! | TCAAAATAACAACGAAACAA+AGG | - | chr8_2:42567328-42567347 | None:intergenic | 25.0% |
| !! | TTGATCCAATGATTTTATAG+AGG | + | chr8_2:42567509-42567528 | Msa1248490:intron | 25.0% |
| ! | TAACAACAGCATATTAGAAA+CGG | - | chr8_2:42567570-42567589 | None:intergenic | 25.0% |
| ! | TCTTTGTGTTTATTTCCTAA+AGG | + | chr8_2:42567601-42567620 | Msa1248490:intron | 25.0% |
| !!! | ACAGAATCACTTTTACTTTT+CGG | + | chr8_2:42567848-42567867 | Msa1248490:intron | 25.0% |
| ! | AGATATTGAGAATTGATGAA+GGG | - | chr8_2:42568127-42568146 | None:intergenic | 25.0% |
| !!! | TTTGAGAATATTTGATTTGC+CGG | - | chr8_2:42568184-42568203 | None:intergenic | 25.0% |
| !!! | GATTTTGATCAACTTTAAGA+TGG | - | chr8_2:42568254-42568273 | None:intergenic | 25.0% |
| ! | AGTTGATCAAAATCATAAAG+GGG | + | chr8_2:42568260-42568279 | Msa1248490:CDS | 25.0% |
| ! | CAATCCCAAATTAATTTCAT+GGG | + | chr8_2:42568693-42568712 | Msa1248490:CDS | 25.0% |
| GAAAATGAATTGAAGAGTTG+GGG | + | chr8_2:42563237-42563256 | Msa1248490:CDS | 30.0% | |
| TGATGGTTGGATATTTGAAA+AGG | + | chr8_2:42563329-42563348 | Msa1248490:intron | 30.0% | |
| GATGGTTGGATATTTGAAAA+GGG | + | chr8_2:42563330-42563349 | Msa1248490:intron | 30.0% | |
| GGATATTTGAAAAGGGTTTA+AGG | + | chr8_2:42563337-42563356 | Msa1248490:intron | 30.0% | |
| GAGTGTAACCATAAGTTTAT+GGG | + | chr8_2:42563377-42563396 | Msa1248490:intron | 30.0% | |
| AGTGTAACCATAAGTTTATG+GGG | + | chr8_2:42563378-42563397 | Msa1248490:intron | 30.0% | |
| TTCACTCCGAAGTTATAAAT+AGG | - | chr8_2:42563593-42563612 | None:intergenic | 30.0% | |
| GAACTCCCTATACAAAAAAT+AGG | - | chr8_2:42563621-42563640 | None:intergenic | 30.0% | |
| AATGACTTACCATTGTGAAA+CGG | - | chr8_2:42563833-42563852 | None:intergenic | 30.0% | |
| ! | GGATTGATACTTGATAACAA+AGG | - | chr8_2:42563895-42563914 | None:intergenic | 30.0% |
| GAGTATTATTTATCATGTGG+GGG | - | chr8_2:42563916-42563935 | None:intergenic | 30.0% | |
| !! | TAATACTCTGATTTGCTTCA+AGG | + | chr8_2:42563928-42563947 | Msa1248490:intron | 30.0% |
| !! | AATACTCTGATTTGCTTCAA+GGG | + | chr8_2:42563929-42563948 | Msa1248490:intron | 30.0% |
| ACAGTTCCCTATACAAAATA+AGG | + | chr8_2:42564057-42564076 | Msa1248490:intron | 30.0% | |
| TGATATCATGGATCCATAAA+AGG | + | chr8_2:42564082-42564101 | Msa1248490:intron | 30.0% | |
| AACAGTATAACACGATAACT+CGG | + | chr8_2:42564111-42564130 | Msa1248490:intron | 30.0% | |
| !!! | TATGCAAGAGTCACTTTTTT+CGG | + | chr8_2:42564160-42564179 | Msa1248490:intron | 30.0% |
| TTATGTTTCAAAGGCTTAAG+TGG | + | chr8_2:42564247-42564266 | Msa1248490:intron | 30.0% | |
| AAATTACCGAGCTTGAAATT+CGG | - | chr8_2:42564532-42564551 | None:intergenic | 30.0% | |
| TAGAAAATTCTGAATGTCTC+AGG | - | chr8_2:42564676-42564695 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCTCAAACCAAAG+AGG | + | chr8_2:42564870-42564889 | Msa1248490:intron | 30.0% |
| ! | TAATGATGATCCAGTTTGTT+AGG | + | chr8_2:42565025-42565044 | Msa1248490:intron | 30.0% |
| !! | GTGGAAAATTGATTTTGTTG+AGG | - | chr8_2:42565326-42565345 | None:intergenic | 30.0% |
| !! | GAATTGAGTATTGACAAAGT+TGG | - | chr8_2:42565483-42565502 | None:intergenic | 30.0% |
| AATACTCAATTCTTCATTCC+AGG | + | chr8_2:42565491-42565510 | Msa1248490:CDS | 30.0% | |
| ATACAAAGTTTCAACTCAGA+AGG | + | chr8_2:42565728-42565747 | Msa1248490:CDS | 30.0% | |
| TACAAAGTTTCAACTCAGAA+GGG | + | chr8_2:42565729-42565748 | Msa1248490:CDS | 30.0% | |
| ! | ATCGAATTATGTTTCTAACG+AGG | + | chr8_2:42566075-42566094 | Msa1248490:intron | 30.0% |
| AAATTCGTCAAGTATCAACA+AGG | + | chr8_2:42566300-42566319 | Msa1248490:intron | 30.0% | |
| ! | CTACTAACTAGTTTAAACCT+AGG | - | chr8_2:42566360-42566379 | None:intergenic | 30.0% |
| AGTAGTGTGTTTGTATAGAA+AGG | + | chr8_2:42566375-42566394 | Msa1248490:intron | 30.0% | |
| !!! | AGCGATTATTTTTGAGCAAA+TGG | - | chr8_2:42566491-42566510 | None:intergenic | 30.0% |
| !! | ATGACGATATTGGTTTATCA+CGG | + | chr8_2:42566516-42566535 | Msa1248490:intron | 30.0% |
| AATGCCTTCTATAAAACCAT+TGG | - | chr8_2:42566746-42566765 | None:intergenic | 30.0% | |
| TAGAATTATGTGTCCAAATG+AGG | + | chr8_2:42566897-42566916 | Msa1248490:intron | 30.0% | |
| TATCAAACTCACTAATCACT+AGG | - | chr8_2:42566962-42566981 | None:intergenic | 30.0% | |
| GAAGTTTCAAATCTCACAAT+TGG | - | chr8_2:42567232-42567251 | None:intergenic | 30.0% | |
| ! | TGTCTATCGAATATCGTTTT+TGG | + | chr8_2:42567681-42567700 | Msa1248490:intron | 30.0% |
| !! | ACTTTTACTTTTCGGATTAC+TGG | + | chr8_2:42567856-42567875 | Msa1248490:intron | 30.0% |
| TTAGCACATATGCATTTATC+TGG | - | chr8_2:42567956-42567975 | None:intergenic | 30.0% | |
| GATATTGAGAATTGATGAAG+GGG | - | chr8_2:42568126-42568145 | None:intergenic | 30.0% | |
| CAGATATTGAGAATTGATGA+AGG | - | chr8_2:42568128-42568147 | None:intergenic | 30.0% | |
| !! | TGATTTTCCTTTTGTTGCTT+GGG | - | chr8_2:42568360-42568379 | None:intergenic | 30.0% |
| ! | TTGATTTTCCTTTTGTTGCT+TGG | - | chr8_2:42568361-42568380 | None:intergenic | 30.0% |
| AAGCAACAAAAGGAAAATCA+AGG | + | chr8_2:42568360-42568379 | Msa1248490:CDS | 30.0% | |
| AGCAACAAAAGGAAAATCAA+GGG | + | chr8_2:42568361-42568380 | Msa1248490:CDS | 30.0% | |
| ATCTCTCATTGCAAATTTGT+AGG | - | chr8_2:42568389-42568408 | None:intergenic | 30.0% | |
| AAGTCTCTTTCTAGATTTAG+TGG | + | chr8_2:42568432-42568451 | Msa1248490:CDS | 30.0% | |
| AATTAAGATTTAGGGACCTT+AGG | + | chr8_2:42568538-42568557 | Msa1248490:CDS | 30.0% | |
| GCAATCCCAAATTAATTTCA+TGG | + | chr8_2:42568692-42568711 | Msa1248490:CDS | 30.0% | |
| GTCACCCATGAAATTAATTT+GGG | - | chr8_2:42568700-42568719 | None:intergenic | 30.0% | |
| TGTCACCCATGAAATTAATT+TGG | - | chr8_2:42568701-42568720 | None:intergenic | 30.0% | |
| ATGCTACATCTACAAAACTT+GGG | - | chr8_2:42568887-42568906 | None:intergenic | 30.0% | |
| AATGCTACATCTACAAAACT+TGG | - | chr8_2:42568888-42568907 | None:intergenic | 30.0% | |
| ! | AGTTTGGAACAACAAAAAAG+CGG | - | chr8_2:42568946-42568965 | None:intergenic | 30.0% |
| TCCAAACTTCCATTGTAATA+CGG | + | chr8_2:42568958-42568977 | Msa1248490:three_prime_UTR | 30.0% | |
| ATGAAAGTTCCTAATCATGA+AGG | - | chr8_2:42569120-42569139 | None:intergenic | 30.0% | |
| TAGGAACTTTCATATGTTGA+TGG | + | chr8_2:42569127-42569146 | Msa1248490:three_prime_UTR | 30.0% | |
| AGAAGCAGAGGACAAAAAAA+TGG | + | chr8_2:42563270-42563289 | Msa1248490:CDS | 35.0% | |
| GGAGTGTAACCATAAGTTTA+TGG | + | chr8_2:42563376-42563395 | Msa1248490:intron | 35.0% | |
| ATTTGCACCCCATAAACTTA+TGG | - | chr8_2:42563388-42563407 | None:intergenic | 35.0% | |
| TTTATGGGGTGCAAATATGT+TGG | + | chr8_2:42563392-42563411 | Msa1248490:intron | 35.0% | |
| CAACCATATGTTGTGATGTA+CGG | - | chr8_2:42563649-42563668 | None:intergenic | 35.0% | |
| CCTCAAGATTGTTCATTTGT+TGG | - | chr8_2:42563732-42563751 | None:intergenic | 35.0% | |
| CCAACAAATGAACAATCTTG+AGG | + | chr8_2:42563729-42563748 | Msa1248490:intron | 35.0% | |
| TCTCCCATTATTTCAAGAAC+CGG | + | chr8_2:42563776-42563795 | Msa1248490:intron | 35.0% | |
| ATGACTTACCATTGTGAAAC+GGG | - | chr8_2:42563832-42563851 | None:intergenic | 35.0% | |
| TCACAATGGTAAGTCATTCT+TGG | + | chr8_2:42563835-42563854 | Msa1248490:intron | 35.0% | |
| CAAACACAATCAAGAAGACT+TGG | - | chr8_2:42564196-42564215 | None:intergenic | 35.0% | |
| CATAACGAGCACTCAAAATT+TGG | + | chr8_2:42564309-42564328 | Msa1248490:intron | 35.0% | |
| AGAATAAGATTCCCTAGAGT+CGG | + | chr8_2:42564459-42564478 | Msa1248490:intron | 35.0% | |
| ! | GTTAACACATTGTTGACTGT+TGG | + | chr8_2:42564490-42564509 | Msa1248490:intron | 35.0% |
| GAATTTCAAGCTCGGTAATT+TGG | + | chr8_2:42564531-42564550 | Msa1248490:intron | 35.0% | |
| AGAACACAATTCACTTCACA+AGG | + | chr8_2:42564695-42564714 | Msa1248490:intron | 35.0% | |
| AGTCACTACAATATCCTCTT+TGG | - | chr8_2:42564887-42564906 | None:intergenic | 35.0% | |
| !! | AAGGAGTATCATTGAACTCA+TGG | + | chr8_2:42565217-42565236 | Msa1248490:intron | 35.0% |
| AAAGAAGATTGAGATAGAGG+TGG | - | chr8_2:42565437-42565456 | None:intergenic | 35.0% | |
| CAGAAAGAAGATTGAGATAG+AGG | - | chr8_2:42565440-42565459 | None:intergenic | 35.0% | |
| ACAAAGTTTCAACTCAGAAG+GGG | + | chr8_2:42565730-42565749 | Msa1248490:CDS | 35.0% | |
| AAGTTGAATGTGGTGTGAAA+AGG | + | chr8_2:42565837-42565856 | Msa1248490:CDS | 35.0% | |
| ACTAAATATGGTCGAGTACA+TGG | - | chr8_2:42566208-42566227 | None:intergenic | 35.0% | |
| CGACCATATTTAGTGTGATA+AGG | + | chr8_2:42566214-42566233 | Msa1248490:intron | 35.0% | |
| ATAACTAGATAACGTGTCCT+AGG | + | chr8_2:42566340-42566359 | Msa1248490:intron | 35.0% | |
| TTGTATAGAAAGGTCTTCTC+AGG | + | chr8_2:42566385-42566404 | Msa1248490:intron | 35.0% | |
| ACTAATCCGCTATGAGATTA+AGG | - | chr8_2:42566432-42566451 | None:intergenic | 35.0% | |
| !! | TTTATAGAAGGCATTGCATC+AGG | + | chr8_2:42566751-42566770 | Msa1248490:intron | 35.0% |
| !! | TTATAGAAGGCATTGCATCA+GGG | + | chr8_2:42566752-42566771 | Msa1248490:intron | 35.0% |
| ! | ATTTCTAGGTCTTCCTCATT+TGG | - | chr8_2:42566913-42566932 | None:intergenic | 35.0% |
| ! | AAGTCTTATCCCACTAAGTA+GGG | - | chr8_2:42567038-42567057 | None:intergenic | 35.0% |
| TCAGCAAAGTTCAACACAAT+TGG | + | chr8_2:42567134-42567153 | Msa1248490:intron | 35.0% | |
| CAACACAATTGGTAAATAGC+TGG | + | chr8_2:42567145-42567164 | Msa1248490:intron | 35.0% | |
| GTCCTAGGTTGTTTATAGAA+AGG | + | chr8_2:42567175-42567194 | Msa1248490:intron | 35.0% | |
| CGTCTTTGAGTGAATCTTTA+GGG | - | chr8_2:42567273-42567292 | None:intergenic | 35.0% | |
| TCGTCTTTGAGTGAATCTTT+AGG | - | chr8_2:42567274-42567293 | None:intergenic | 35.0% | |
| ! | CGAAACAAAGGCATAAGATA+AGG | - | chr8_2:42567316-42567335 | None:intergenic | 35.0% |
| TGCAGCCTCTATAAAATCAT+TGG | - | chr8_2:42567517-42567536 | None:intergenic | 35.0% | |
| ACAATGTCCAGTATGATGTT+TGG | + | chr8_2:42567536-42567555 | Msa1248490:intron | 35.0% | |
| CAATGTCCAGTATGATGTTT+GGG | + | chr8_2:42567537-42567556 | Msa1248490:intron | 35.0% | |
| TTACATCCCAAACATCATAC+TGG | - | chr8_2:42567546-42567565 | None:intergenic | 35.0% | |
| TTCTTTACTTGCTTTAGCAC+AGG | - | chr8_2:42568489-42568508 | None:intergenic | 35.0% | |
| GCTAAAGCAAGTAAAGAACA+AGG | + | chr8_2:42568491-42568510 | Msa1248490:CDS | 35.0% | |
| TAAAGCTGCAAAAGTTGCAT+TGG | + | chr8_2:42568635-42568654 | Msa1248490:CDS | 35.0% | |
| TTCTCATTGCCGTATTACAA+TGG | - | chr8_2:42568970-42568989 | None:intergenic | 35.0% | |
| TAATTGTCTTGTATCCGTCT+AGG | + | chr8_2:42569038-42569057 | Msa1248490:three_prime_UTR | 35.0% | |
| ! | TTTCAAGCAAAGTACCTAGA+CGG | - | chr8_2:42569055-42569074 | None:intergenic | 35.0% |
| GCTTGAAATATAGATCACGA+TGG | + | chr8_2:42569067-42569086 | Msa1248490:three_prime_UTR | 35.0% | |
| ! | GATGGTATTTTCCAAGATGA+GGG | + | chr8_2:42569085-42569104 | Msa1248490:three_prime_UTR | 35.0% |
| AAAGTTCCTAATCATGAAGG+AGG | - | chr8_2:42569117-42569136 | None:intergenic | 35.0% | |
| TATGTTGTGATGTACGGAGA+CGG | - | chr8_2:42563643-42563662 | None:intergenic | 40.0% | |
| TCTCCGTACATCACAACATA+TGG | + | chr8_2:42563643-42563662 | Msa1248490:intron | 40.0% | |
| ! | ACCTCAATTTTGCTTCCGAT+CGG | + | chr8_2:42563679-42563698 | Msa1248490:intron | 40.0% |
| ! | CTTGAAATAATGGGAGACGA+CGG | - | chr8_2:42563773-42563792 | None:intergenic | 40.0% |
| ! | CTTGATAACAAAGGACAAGC+AGG | - | chr8_2:42563886-42563905 | None:intergenic | 40.0% |
| !! | GTTTTTCAACCAGCAGAAGA+AGG | - | chr8_2:42564030-42564049 | None:intergenic | 40.0% |
| GAATAAGATTCCCTAGAGTC+GGG | + | chr8_2:42564460-42564479 | Msa1248490:intron | 40.0% | |
| AACATTGTATCCCGACTCTA+GGG | - | chr8_2:42564473-42564492 | None:intergenic | 40.0% | |
| TAACATTGTATCCCGACTCT+AGG | - | chr8_2:42564474-42564493 | None:intergenic | 40.0% | |
| GTTGACTGTTGGATTGAGAT+CGG | + | chr8_2:42564501-42564520 | Msa1248490:intron | 40.0% | |
| GATTGTCCGAATTTCAAGCT+CGG | + | chr8_2:42564523-42564542 | Msa1248490:intron | 40.0% | |
| TAACGCTCACCAATTCACTA+CGG | + | chr8_2:42564631-42564650 | Msa1248490:intron | 40.0% | |
| TAGCAAATGCCTTGACATGT+TGG | + | chr8_2:42565091-42565110 | Msa1248490:intron | 40.0% | |
| CCAGAGAAACGTGGTTATTA+TGG | - | chr8_2:42565379-42565398 | None:intergenic | 40.0% | |
| CCATAATAACCACGTTTCTC+TGG | + | chr8_2:42565376-42565395 | Msa1248490:CDS | 40.0% | |
| ATGAAAGAACCAGAGAAACG+TGG | - | chr8_2:42565388-42565407 | None:intergenic | 40.0% | |
| !!! | TGGTGGTTTTGGAAGATTGA+TGG | - | chr8_2:42565417-42565436 | None:intergenic | 40.0% |
| GGAAGAATGAAGATGATACC+TGG | - | chr8_2:42565512-42565531 | None:intergenic | 40.0% | |
| CAAAGTTTCAACTCAGAAGG+GGG | + | chr8_2:42565731-42565750 | Msa1248490:CDS | 40.0% | |
| AAAGTTTCAACTCAGAAGGG+GGG | + | chr8_2:42565732-42565751 | Msa1248490:CDS | 40.0% | |
| AAGAAGGAAGAGATTGAAGG+TGG | + | chr8_2:42565755-42565774 | Msa1248490:CDS | 40.0% | |
| AGATTGAAGGTGGAGAAGAA+GGG | + | chr8_2:42565765-42565784 | Msa1248490:CDS | 40.0% | |
| ! | GTGAAATAGTGGAAGAGTTG+AGG | + | chr8_2:42565807-42565826 | Msa1248490:CDS | 40.0% |
| ! | AATAGTGGAAGAGTTGAGGA+AGG | + | chr8_2:42565811-42565830 | Msa1248490:CDS | 40.0% |
| AGGAAGGAAGAAGTTGAATG+TGG | + | chr8_2:42565827-42565846 | Msa1248490:CDS | 40.0% | |
| ! | GTGGACTAAGGAACAAGAAT+TGG | + | chr8_2:42565895-42565914 | Msa1248490:CDS | 40.0% |
| TTGTTCCAGAAATGTGGACT+AGG | - | chr8_2:42565950-42565969 | None:intergenic | 40.0% | |
| GAAACGTTGTTCCAGAAATG+TGG | - | chr8_2:42565956-42565975 | None:intergenic | 40.0% | |
| GTGATGCCTTAATCTCATAG+CGG | + | chr8_2:42566423-42566442 | Msa1248490:intron | 40.0% | |
| TCGCTCAAAGATGACGATAT+TGG | + | chr8_2:42566506-42566525 | Msa1248490:intron | 40.0% | |
| ATAAGGAAGGAATTGCAGCA+GGG | + | chr8_2:42566649-42566668 | Msa1248490:CDS | 40.0% | |
| ! | CAAGTCTTATCCCACTAAGT+AGG | - | chr8_2:42567039-42567058 | None:intergenic | 40.0% |
| CTACTTAGTGGGATAAGACT+TGG | + | chr8_2:42567037-42567056 | Msa1248490:intron | 40.0% | |
| TGAACTTTGCTGATCCTTGA+CGG | - | chr8_2:42567127-42567146 | None:intergenic | 40.0% | |
| GGCCTTTCTATAAACAACCT+AGG | - | chr8_2:42567180-42567199 | None:intergenic | 40.0% | |
| !! | GAGTGAATCTTTAGGGCAAA+TGG | - | chr8_2:42567266-42567285 | None:intergenic | 40.0% |
| TCACTCAAAGACGATGACTT+TGG | + | chr8_2:42567280-42567299 | Msa1248490:intron | 40.0% | |
| GTGGCACACAATGATAAAGA+TGG | + | chr8_2:42567410-42567429 | Msa1248490:CDS | 40.0% | |
| ATAAAGATGGCATTGCAGCA+GGG | + | chr8_2:42567423-42567442 | Msa1248490:CDS | 40.0% | |
| CTAGATAGATCACTTGGTCA+TGG | - | chr8_2:42567739-42567758 | None:intergenic | 40.0% | |
| CATGACCAAGTGATCTATCT+AGG | + | chr8_2:42567737-42567756 | Msa1248490:intron | 40.0% | |
| CGAGCATTTGCATTATTCAG+AGG | + | chr8_2:42567760-42567779 | Msa1248490:intron | 40.0% | |
| AGGTCAAGCTTTCAATTGCA+TGG | + | chr8_2:42567780-42567799 | Msa1248490:intron | 40.0% | |
| GGTCAAGCTTTCAATTGCAT+GGG | + | chr8_2:42567781-42567800 | Msa1248490:intron | 40.0% | |
| GTCAAGCTTTCAATTGCATG+GGG | + | chr8_2:42567782-42567801 | Msa1248490:intron | 40.0% | |
| TCAAGCTTTCAATTGCATGG+GGG | + | chr8_2:42567783-42567802 | Msa1248490:intron | 40.0% | |
| !! | GCATATGTGCTAATTTGCTC+TGG | + | chr8_2:42567963-42567982 | Msa1248490:intron | 40.0% |
| TGCTGTACAAAATCTGTTGC+AGG | + | chr8_2:42567996-42568015 | Msa1248490:intron | 40.0% | |
| AAAATCTGTTGCAGGTACCT+GGG | + | chr8_2:42568004-42568023 | Msa1248490:intron | 40.0% | |
| ! | CAATCTTGTTTAGACTTCCC+AGG | - | chr8_2:42568024-42568043 | None:intergenic | 40.0% |
| AGTAAACTGCTCATACCTAC+TGG | + | chr8_2:42568150-42568169 | Msa1248490:CDS | 40.0% | |
| GGAGTACAAAGTTCTTCACT+AGG | - | chr8_2:42568339-42568358 | None:intergenic | 40.0% | |
| TTGTACTCCCAAGCAACAAA+AGG | + | chr8_2:42568350-42568369 | Msa1248490:CDS | 40.0% | |
| TCTAGATTTAGTGGCTCATC+AGG | + | chr8_2:42568441-42568460 | Msa1248490:CDS | 40.0% | |
| TTTACTTGCTTTAGCACAGG+TGG | - | chr8_2:42568486-42568505 | None:intergenic | 40.0% | |
| AACAAATCTGTAGCTGGAGA+AGG | + | chr8_2:42568585-42568604 | Msa1248490:CDS | 40.0% | |
| AGTTGAAGGTGAAAGTCCAT+AGG | + | chr8_2:42568758-42568777 | Msa1248490:CDS | 40.0% | |
| GCCGTATTACAATGGAAGTT+TGG | - | chr8_2:42568962-42568981 | None:intergenic | 40.0% | |
| ! | CGATGGTATTTTCCAAGATG+AGG | + | chr8_2:42569084-42569103 | Msa1248490:three_prime_UTR | 40.0% |
| TGTCATCCTCCTTCATGATT+AGG | + | chr8_2:42569108-42569127 | Msa1248490:three_prime_UTR | 40.0% | |
| TTGAAGAGTTGGGGAGACAA+AGG | + | chr8_2:42563246-42563265 | Msa1248490:CDS | 45.0% | |
| AAAAAATGGCGTGAGTCGAG+AGG | + | chr8_2:42563284-42563303 | Msa1248490:intron | 45.0% | |
| ! | CCTCAATTTTGCTTCCGATC+GGG | + | chr8_2:42563680-42563699 | Msa1248490:intron | 45.0% |
| TTCCGATCGGGTCATAACTT+CGG | + | chr8_2:42563692-42563711 | Msa1248490:intron | 45.0% | |
| ATCCGAAGTTATGACCCGAT+CGG | - | chr8_2:42563697-42563716 | None:intergenic | 45.0% | |
| ! | AAATAATGGGAGACGACGGA+TGG | - | chr8_2:42563769-42563788 | None:intergenic | 45.0% |
| ! | GGGCCGGTTCTTGAAATAAT+GGG | - | chr8_2:42563782-42563801 | None:intergenic | 45.0% |
| ! | TGGGCCGGTTCTTGAAATAA+TGG | - | chr8_2:42563783-42563802 | None:intergenic | 45.0% |
| !! | AAGCAGGCATTGAATCATGC+AGG | - | chr8_2:42563870-42563889 | None:intergenic | 45.0% |
| TTTCAACCAGCAGAAGAAGG+TGG | - | chr8_2:42564027-42564046 | None:intergenic | 45.0% | |
| AATGTGCATAACAGCCAGAG+AGG | + | chr8_2:42564421-42564440 | Msa1248490:intron | 45.0% | |
| TAAAGCACAACACTCCTCTC+TGG | - | chr8_2:42564438-42564457 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGCCGTAGTGAAT+TGG | - | chr8_2:42564643-42564662 | None:intergenic | 45.0% |
| TCTCAGGCTGACGTGAATTT+GGG | - | chr8_2:42564660-42564679 | None:intergenic | 45.0% | |
| GATGTCGTACCAACATGTCA+AGG | - | chr8_2:42565103-42565122 | None:intergenic | 45.0% | |
| ! | CACGATCTGTGAAGGTTTTG+TGG | - | chr8_2:42565345-42565364 | None:intergenic | 45.0% |
| !! | TGAGATAGAGGTGGTGGTTT+TGG | - | chr8_2:42565428-42565447 | None:intergenic | 45.0% |
| GAAGATTGAGATAGAGGTGG+TGG | - | chr8_2:42565434-42565453 | None:intergenic | 45.0% | |
| GGGAAGAAGGAAGAGATTGA+AGG | + | chr8_2:42565752-42565771 | Msa1248490:CDS | 45.0% | |
| GAGATTGAAGGTGGAGAAGA+AGG | + | chr8_2:42565764-42565783 | Msa1248490:CDS | 45.0% | |
| AAGGTGGAGAAGAAGGGAAA+AGG | + | chr8_2:42565771-42565790 | Msa1248490:CDS | 45.0% | |
| GCACGATGGTTGTGAAATAG+TGG | + | chr8_2:42565796-42565815 | Msa1248490:CDS | 45.0% | |
| GTGAAAAGGAAGAGAAAGCG+CGG | + | chr8_2:42565851-42565870 | Msa1248490:CDS | 45.0% | |
| !! | ACAAGAATTGGCTCTGCGAA+CGG | + | chr8_2:42565907-42565926 | Msa1248490:CDS | 45.0% |
| CAAAGCCTAGTCCACATTTC+TGG | + | chr8_2:42565942-42565961 | Msa1248490:CDS | 45.0% | |
| CTGGAACAACGTTTCGAAAC+TGG | + | chr8_2:42565961-42565980 | Msa1248490:CDS | 45.0% | |
| TCTCAGGAGAGTCAAAACAC+AGG | + | chr8_2:42566401-42566420 | Msa1248490:intron | 45.0% | |
| CGATGCTGCACACAATGATA+AGG | + | chr8_2:42566632-42566651 | Msa1248490:CDS | 45.0% | |
| GCTGCACACAATGATAAGGA+AGG | + | chr8_2:42566636-42566655 | Msa1248490:CDS | 45.0% | |
| GATAAGGAAGGAATTGCAGC+AGG | + | chr8_2:42566648-42566667 | Msa1248490:CDS | 45.0% | |
| CATTGCATCAGGGTTTACAG+CGG | + | chr8_2:42566762-42566781 | Msa1248490:intron | 45.0% | |
| ACGTAGTTGACCCTACTTAG+TGG | + | chr8_2:42567025-42567044 | Msa1248490:intron | 45.0% | |
| CGTAGTTGACCCTACTTAGT+GGG | + | chr8_2:42567026-42567045 | Msa1248490:intron | 45.0% | |
| GAACTTTGCTGATCCTTGAC+GGG | - | chr8_2:42567126-42567145 | None:intergenic | 45.0% | |
| ATAGCTGGATCATGTGTCCT+AGG | + | chr8_2:42567160-42567179 | Msa1248490:intron | 45.0% | |
| GTTTATAGAAAGGCCGTGTC+CGG | + | chr8_2:42567185-42567204 | Msa1248490:intron | 45.0% | |
| GATAAAGATGGCATTGCAGC+AGG | + | chr8_2:42567422-42567441 | Msa1248490:CDS | 45.0% | |
| CAAGCTTTCAATTGCATGGG+GGG | + | chr8_2:42567784-42567803 | Msa1248490:intron | 45.0% | |
| CAAAATCTGTTGCAGGTACC+TGG | + | chr8_2:42568003-42568022 | Msa1248490:intron | 45.0% | |
| TCAATGTCAGCCTCGATCAA+GGG | + | chr8_2:42568080-42568099 | Msa1248490:CDS | 45.0% | |
| GCTCATACCTACTGGAAAGA+AGG | + | chr8_2:42568158-42568177 | Msa1248490:CDS | 45.0% | |
| ATACCTACTGGAAAGAAGGC+CGG | + | chr8_2:42568162-42568181 | Msa1248490:CDS | 45.0% | |
| TAGAAGCTGCTCTTCTCCTA+AGG | - | chr8_2:42568557-42568576 | None:intergenic | 45.0% | |
| TCTGTAGCTGGAGAAGGAAA+AGG | + | chr8_2:42568591-42568610 | Msa1248490:CDS | 45.0% | |
| !! | CTGGAGAAGGAAAAGGCATT+CGG | + | chr8_2:42568598-42568617 | Msa1248490:CDS | 45.0% |
| !! | TGACAGTTGTAGTTCTGACG+AGG | + | chr8_2:42568716-42568735 | Msa1248490:CDS | 45.0% |
| GAGGACAATGACGATGACAT+TGG | + | chr8_2:42568735-42568754 | Msa1248490:CDS | 45.0% | |
| GACGATGACATTGGAGTTGA+AGG | + | chr8_2:42568744-42568763 | Msa1248490:CDS | 45.0% | |
| ATTAGCTCGAGAAGAGCCTA+TGG | - | chr8_2:42568777-42568796 | None:intergenic | 45.0% | |
| !!! | ATTAAAATATTTTTTGTATA+GGG | + | chr8_2:42563523-42563542 | Msa1248490:intron | 5.0% |
| !!! | TCATATATATTTTTTTTTTA+AGG | - | chr8_2:42567652-42567671 | None:intergenic | 5.0% |
| GGAGACAAAGGAAGAAGCAG+AGG | + | chr8_2:42563258-42563277 | Msa1248490:CDS | 50.0% | |
| CCCGATCGGAAGCAAAATTG+AGG | - | chr8_2:42563683-42563702 | None:intergenic | 50.0% | |
| !! | TGTGAAACGGGCTAGAAGCT+GGG | - | chr8_2:42563820-42563839 | None:intergenic | 50.0% |
| !! | TTGTGAAACGGGCTAGAAGC+TGG | - | chr8_2:42563821-42563840 | None:intergenic | 50.0% |
| GCTTCTAGCCCGTTTCACAA+TGG | + | chr8_2:42563821-42563840 | Msa1248490:intron | 50.0% | |
| GTCTCAGGCTGACGTGAATT+TGG | - | chr8_2:42564661-42564680 | None:intergenic | 50.0% | |
| GAGAGTTGCACGATCTGTGA+AGG | - | chr8_2:42565353-42565372 | None:intergenic | 50.0% | |
| GTTGGAACTCGAACTCGAAC+AGG | - | chr8_2:42565465-42565484 | None:intergenic | 50.0% | |
| ! | GAAGGGAAAAGGAAGCACGA+TGG | + | chr8_2:42565782-42565801 | Msa1248490:CDS | 50.0% |
| ! | AAAAGGAAGAGAAAGCGCGG+TGG | + | chr8_2:42565854-42565873 | Msa1248490:CDS | 50.0% |
| ! | GTGGTGGTGAAGTTGCACAA+GGG | + | chr8_2:42565873-42565892 | Msa1248490:CDS | 50.0% |
| !! | AGTTGCACAAGGGTGGACTA+AGG | + | chr8_2:42565883-42565902 | Msa1248490:CDS | 50.0% |
| AATTGCAGCAGGGCTTACAG+CGG | + | chr8_2:42566659-42566678 | Msa1248490:CDS | 50.0% | |
| TAGAGTCGCACATAGTGTGG+TGG | + | chr8_2:42566682-42566701 | Msa1248490:intron | 50.0% | |
| GCATACTATGGAACCCGTCA+AGG | + | chr8_2:42567110-42567129 | Msa1248490:intron | 50.0% | |
| ACTAATCCGCTCTGACTCTC+CGG | - | chr8_2:42567207-42567226 | None:intergenic | 50.0% | |
| TGCGGTTGCTGTAGAACTGT+TGG | + | chr8_2:42567471-42567490 | Msa1248490:intron | 50.0% | |
| GCTCGCCTAGATAGATCACT+TGG | - | chr8_2:42567745-42567764 | None:intergenic | 50.0% | |
| CTTGATCGAGGCTGACATTG+AGG | - | chr8_2:42568081-42568100 | None:intergenic | 50.0% | |
| CTCAATGTCAGCCTCGATCA+AGG | + | chr8_2:42568079-42568098 | Msa1248490:CDS | 50.0% | |
| ATTGCCTTTGCCCTTGATCG+AGG | - | chr8_2:42568093-42568112 | None:intergenic | 50.0% | |
| GGAGAAGAGCAGCTTCTACA+CGG | + | chr8_2:42568559-42568578 | Msa1248490:CDS | 50.0% | |
| GAGAAGAGCAGCTTCTACAC+GGG | + | chr8_2:42568560-42568579 | Msa1248490:CDS | 50.0% | |
| CGGGCAAACAAATCTGTAGC+TGG | + | chr8_2:42568579-42568598 | Msa1248490:CDS | 50.0% | |
| TAATGGGAGACGACGGATGG+TGG | - | chr8_2:42563766-42563785 | None:intergenic | 55.0% | |
| CTGGGGTCAGTCAAGCTTGT+GGG | - | chr8_2:42563802-42563821 | None:intergenic | 55.0% | |
| !! | GTGAAACGGGCTAGAAGCTG+GGG | - | chr8_2:42563819-42563838 | None:intergenic | 55.0% |
| ! | AGCAGAAGAAGGTGGTGCTG+GGG | - | chr8_2:42564019-42564038 | None:intergenic | 55.0% |
| CAGCAGAAGAAGGTGGTGCT+GGG | - | chr8_2:42564020-42564039 | None:intergenic | 55.0% | |
| GTGAGCGTTAGTGCGTGCAT+TGG | - | chr8_2:42564621-42564640 | None:intergenic | 55.0% | |
| CAACTCAGAAGGGGGGAAGA+AGG | + | chr8_2:42565739-42565758 | Msa1248490:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGTTGCACA+AGG | + | chr8_2:42565872-42565891 | Msa1248490:CDS | 55.0% |
| GTGGTGAAGTTGCACAAGGG+TGG | + | chr8_2:42565876-42565895 | Msa1248490:CDS | 55.0% | |
| CATTGTGTGCAGCATCGCAG+TGG | - | chr8_2:42566629-42566648 | None:intergenic | 55.0% | |
| CGGTAGAGTCGCACATAGTG+TGG | + | chr8_2:42566679-42566698 | Msa1248490:intron | 55.0% | |
| CATTGTGTGCCACATCGCAG+CGG | - | chr8_2:42567403-42567422 | None:intergenic | 55.0% | |
| CATTGCAGCAGGGCTTACAG+TGG | + | chr8_2:42567433-42567452 | Msa1248490:CDS | 55.0% | |
| TGGTAGAGCTGCACAGAGTG+CGG | + | chr8_2:42567453-42567472 | Msa1248490:intron | 55.0% | |
| GATCGAGGCTGACATTGAGG+CGG | - | chr8_2:42568078-42568097 | None:intergenic | 55.0% | |
| TCAGCCTCGATCAAGGGCAA+AGG | + | chr8_2:42568086-42568105 | Msa1248490:CDS | 55.0% | |
| TTGCCGGCCTTCTTTCCAGT+AGG | - | chr8_2:42568168-42568187 | None:intergenic | 55.0% | |
| GGAGGATGACACCCTCATCT+TGG | - | chr8_2:42569099-42569118 | None:intergenic | 55.0% | |
| GGTCAGTCAAGCTTGTGGGC+CGG | - | chr8_2:42563798-42563817 | None:intergenic | 60.0% | |
| GCTGGGGTCAGTCAAGCTTG+TGG | - | chr8_2:42563803-42563822 | None:intergenic | 60.0% | |
| CCAGCAGAAGAAGGTGGTGC+TGG | - | chr8_2:42564021-42564040 | None:intergenic | 60.0% | |
| CCAGCACCACCTTCTTCTGC+TGG | + | chr8_2:42564018-42564037 | Msa1248490:intron | 60.0% | |
| ! | AGGAAGAGAAAGCGCGGTGG+TGG | + | chr8_2:42565857-42565876 | Msa1248490:CDS | 60.0% |
| TGTGTGCAGCATCGCAGTGG+CGG | - | chr8_2:42566626-42566645 | None:intergenic | 60.0% | |
| GCTGACATTGAGGCGGTGTG+TGG | - | chr8_2:42568071-42568090 | None:intergenic | 60.0% | |
| CCGCTCTGACTCTCCGGACA+CGG | - | chr8_2:42567201-42567220 | None:intergenic | 65.0% | |
| CCGTGTCCGGAGAGTCAGAG+CGG | + | chr8_2:42567198-42567217 | Msa1248490:intron | 65.0% | |
| ACAGTCCAGCCGCTGCGATG+TGG | + | chr8_2:42567391-42567410 | Msa1248490:intron | 65.0% | |
| GAGGCGGTGTGTGGAAGTCG+TGG | - | chr8_2:42568062-42568081 | None:intergenic | 65.0% | |
| GTGTGCCACATCGCAGCGGC+TGG | - | chr8_2:42567399-42567418 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 42563219 | 42569152 | 42563219 | ID=Msa1248490;Name=Msa1248490 |
| chr8_2 | mRNA | 42563219 | 42569152 | 42563219 | ID=Msa1248490-mRNA-1;Parent=Msa1248490;Name=Msa1248490-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0.2|0.33|0.66|1|1|6|373|460 |
| chr8_2 | exon | 42563219 | 42563293 | 42563219 | ID=Msa1248490-mRNA-1:exon:12893;Parent=Msa1248490-mRNA-1 |
| chr8_2 | exon | 42565359 | 42565512 | 42565359 | ID=Msa1248490-mRNA-1:exon:12894;Parent=Msa1248490-mRNA-1 |
| chr8_2 | exon | 42565726 | 42565982 | 42565726 | ID=Msa1248490-mRNA-1:exon:12895;Parent=Msa1248490-mRNA-1 |
| chr8_2 | exon | 42566621 | 42566680 | 42566621 | ID=Msa1248490-mRNA-1:exon:12896;Parent=Msa1248490-mRNA-1 |
| chr8_2 | exon | 42567395 | 42567469 | 42567395 | ID=Msa1248490-mRNA-1:exon:12897;Parent=Msa1248490-mRNA-1 |
| chr8_2 | exon | 42568018 | 42569152 | 42568018 | ID=Msa1248490-mRNA-1:exon:12898;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42563219 | 42563293 | 42563219 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42565359 | 42565512 | 42565359 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42565726 | 42565982 | 42565726 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42566621 | 42566680 | 42566621 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42567395 | 42567469 | 42567395 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | CDS | 42568018 | 42568779 | 42568018 | ID=Msa1248490-mRNA-1:cds;Parent=Msa1248490-mRNA-1 |
| chr8_2 | three_prime_UTR | 42568780 | 42569152 | 42568780 | ID=Msa1248490-mRNA-1:three_prime_utr;Parent=Msa1248490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
