AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1195050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195050 MtrunA17_Chr8g0363921 95.789 285 5 2 1 285 1 278 0.0 549
Msa1195050 MtrunA17_Chr5g0415291 70.507 217 44 6 75 285 37 239 3.35e-96 283
Msa1195050 MtrunA17_Chr7g0234761 53.659 205 73 6 84 276 234 428 3.18e-53 181
Msa1195050 MtrunA17_Chr8g0339091 62.590 139 41 3 109 239 237 372 4.57e-50 172
Msa1195050 MtrunA17_Chr5g0421111 71.053 114 31 1 134 247 343 454 1.20e-46 164
Msa1195050 MtrunA17_Chr8g0365941 53.529 170 69 4 79 247 234 394 2.66e-46 161
Msa1195050 MtrunA17_Chr4g0035101 55.484 155 53 2 110 251 85 236 3.96e-46 158
Msa1195050 MtrunA17_Chr1g0152131 38.591 298 126 10 5 257 74 359 6.59e-46 159
Msa1195050 MtrunA17_Chr3g0144641 59.310 145 46 4 122 254 149 292 4.06e-44 154
Msa1195050 MtrunA17_Chr3g0131771 76.923 91 21 0 139 229 128 218 7.35e-41 144
Msa1195050 MtrunA17_Chr8g0385911 88.000 75 9 0 155 229 142 216 3.46e-40 142
Msa1195050 MtrunA17_Chr7g0258161 72.093 86 24 0 152 237 167 252 1.58e-37 135
Msa1195050 MtrunA17_Chr1g0174161 69.412 85 26 0 155 239 157 241 4.34e-36 131
Msa1195050 MtrunA17_Chr6g0484271 50.000 140 53 3 99 238 113 235 1.09e-33 124
Msa1195050 MtrunA17_Chr4g0074161 64.384 73 25 1 151 223 199 270 1.60e-21 93.6
Msa1195050 MtrunA17_Chr1g0190731 57.500 80 27 2 144 223 185 257 5.49e-20 88.6
Msa1195050 MtrunA17_Chr1g0182791 47.561 82 41 2 160 241 319 398 2.92e-15 75.5
Msa1195050 MtrunA17_Chr1g0193321 50.000 64 31 1 160 223 464 526 4.00e-15 75.5
Msa1195050 MtrunA17_Chr4g0032951 55.385 65 29 0 158 222 355 419 1.61e-14 73.2
Msa1195050 MtrunA17_Chr2g0329041 50.769 65 32 0 156 220 330 394 8.78e-14 70.9
Msa1195050 MtrunA17_Chr1g0174271 50.746 67 33 0 158 224 298 364 1.69e-13 70.1
Msa1195050 MtrunA17_Chr4g0014771 49.231 65 33 0 158 222 118 182 3.43e-13 67.0
Msa1195050 MtrunA17_Chr1g0184841 53.750 80 30 2 144 223 112 184 3.68e-13 68.2
Msa1195050 MtrunA17_Chr7g0258181 44.595 74 41 0 158 231 243 316 5.17e-13 68.2
Msa1195050 MtrunA17_Chr1g0152651 49.231 65 32 1 158 222 274 337 2.09e-12 66.6
Msa1195050 MtrunA17_Chr1g0153241 44.615 65 35 1 160 224 87 150 3.63e-12 65.1
Msa1195050 MtrunA17_Chr8g0351881 47.692 65 34 0 158 222 316 380 7.64e-12 65.1
Msa1195050 MtrunA17_Chr3g0134741 34.109 129 71 4 107 222 165 292 7.66e-12 64.7
Msa1195050 MtrunA17_Chr5g0393721 50.000 64 31 1 159 222 225 287 1.01e-11 64.3
Msa1195050 MtrunA17_Chr7g0262691 46.875 64 33 1 160 223 254 316 1.23e-11 64.7
Msa1195050 MtrunA17_Chr7g0271251 48.438 64 32 1 160 223 434 496 1.68e-11 64.7
Msa1195050 MtrunA17_Chr3g0095391 46.875 64 33 1 160 223 311 373 2.60e-11 63.5
Msa1195050 MtrunA17_Chr5g0402031 50.000 56 27 1 169 224 116 170 9.14e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195050 AT1G59640.1 59.044 293 83 12 1 285 1 264 6.01e-97 286
Msa1195050 AT1G59640.2 58.000 250 69 11 1 243 1 221 1.20e-75 234
Msa1195050 AT5G62610.2 51.525 295 119 12 1 285 1 281 4.71e-71 221
Msa1195050 AT5G62610.1 51.525 295 119 12 1 285 1 281 4.71e-71 221
Msa1195050 AT3G07340.2 56.442 163 43 3 84 243 206 343 2.28e-48 166
Msa1195050 AT3G07340.1 56.442 163 43 3 84 243 206 343 4.09e-48 166
Msa1195050 AT5G48560.2 77.451 102 19 3 143 243 289 387 7.39e-46 160
Msa1195050 AT1G26260.3 55.696 158 64 2 92 248 110 262 1.12e-45 157
Msa1195050 AT5G48560.1 77.451 102 19 3 143 243 289 387 1.23e-45 160
Msa1195050 AT1G26260.5 55.696 158 64 2 92 248 139 291 2.39e-45 157
Msa1195050 AT1G26260.4 55.696 158 64 2 92 248 161 313 3.95e-45 157
Msa1195050 AT1G26260.1 55.696 158 64 2 92 248 161 313 3.95e-45 157
Msa1195050 AT1G26260.6 55.696 158 64 2 92 248 161 313 3.95e-45 157
Msa1195050 AT1G26260.2 55.696 158 64 2 92 248 161 313 3.95e-45 157
Msa1195050 AT1G68920.1 75.510 98 24 0 149 246 294 391 2.14e-44 157
Msa1195050 AT1G68920.4 75.510 98 24 0 149 246 294 391 2.14e-44 157
Msa1195050 AT1G68920.2 75.510 98 24 0 149 246 294 391 2.14e-44 157
Msa1195050 AT1G68920.3 75.510 98 24 0 149 246 293 390 2.28e-44 157
Msa1195050 AT3G23690.1 60.993 141 34 5 97 232 141 265 1.78e-43 152
Msa1195050 AT5G50915.3 56.115 139 49 3 93 229 79 207 9.47e-43 147
Msa1195050 AT5G50915.4 56.115 139 49 3 93 229 79 207 9.47e-43 147
Msa1195050 AT5G50915.1 56.522 138 48 3 93 228 79 206 1.84e-42 147
Msa1195050 AT5G50915.2 56.522 138 48 3 93 228 79 206 1.84e-42 147
Msa1195050 AT1G10120.2 70.833 96 28 0 151 246 199 294 2.79e-42 149
Msa1195050 AT1G10120.1 70.833 96 28 0 151 246 199 294 2.79e-42 149
Msa1195050 AT4G36540.1 52.055 146 68 1 101 244 82 227 8.67e-41 143
Msa1195050 AT2G18300.2 72.043 93 26 0 152 244 179 271 1.36e-40 144
Msa1195050 AT4G34530.1 82.500 80 14 0 152 231 166 245 1.49e-40 144
Msa1195050 AT4G36540.2 52.778 144 66 1 101 242 82 225 2.57e-40 142
Msa1195050 AT2G18300.3 72.043 93 26 0 152 244 179 271 2.86e-40 144
Msa1195050 AT2G18300.1 73.626 91 24 0 152 242 179 269 3.98e-40 142
Msa1195050 AT2G42300.4 69.318 88 27 0 152 239 179 266 2.78e-38 136
Msa1195050 AT3G57800.2 71.591 88 25 0 152 239 198 285 7.97e-38 137
Msa1195050 AT2G42300.1 65.957 94 32 0 152 245 179 272 1.23e-37 135
Msa1195050 AT1G25330.1 48.507 134 60 2 115 246 66 192 3.96e-34 124
Msa1195050 AT1G18400.2 74.667 75 19 0 156 230 143 217 8.43e-34 124
Msa1195050 AT1G18400.1 74.667 75 19 0 156 230 143 217 1.54e-33 123
Msa1195050 AT1G73830.2 69.512 82 25 0 157 238 146 227 2.73e-33 122
Msa1195050 AT1G73830.1 69.512 82 25 0 157 238 146 227 2.88e-33 122
Msa1195050 AT3G57800.1 46.667 135 25 1 152 239 198 332 6.06e-29 114
Msa1195050 AT2G24260.2 63.014 73 26 1 151 223 28 99 1.69e-22 94.0
Msa1195050 AT2G24260.1 63.014 73 26 1 151 223 131 202 1.24e-21 93.6
Msa1195050 AT4G30980.1 49.057 106 42 2 118 223 101 194 5.23e-21 91.3
Msa1195050 AT4G30980.2 68.182 66 20 1 158 223 178 242 7.45e-21 91.3
Msa1195050 AT5G58010.1 68.182 66 20 1 158 223 99 163 7.96e-21 90.5
Msa1195050 AT2G42300.5 78.723 47 10 0 152 198 179 225 2.65e-19 84.7
Msa1195050 AT2G42300.3 78.723 47 10 0 152 198 179 225 2.65e-19 84.7
Msa1195050 AT2G42300.2 80.435 46 9 0 152 197 179 224 3.63e-19 84.7
Msa1195050 AT2G20180.7 35.115 131 66 3 93 223 160 271 2.55e-15 75.9
Msa1195050 AT2G20180.1 35.115 131 66 3 93 223 160 271 2.55e-15 75.9
Msa1195050 AT2G20180.5 35.115 131 66 3 93 223 160 271 2.55e-15 75.9
Msa1195050 AT2G20180.4 35.115 131 66 3 93 223 231 342 3.18e-15 75.9
Msa1195050 AT2G20180.6 35.115 131 66 3 93 223 231 342 3.18e-15 75.9
Msa1195050 AT2G20180.2 35.115 131 66 3 93 223 231 342 3.18e-15 75.9
Msa1195050 AT2G20180.3 35.115 131 66 3 93 223 231 342 3.18e-15 75.9
Msa1195050 AT1G09530.3 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT1G09530.2 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT1G09530.5 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT1G09530.1 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT1G09530.4 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT1G09530.6 50.000 64 31 1 160 223 339 401 7.93e-15 74.7
Msa1195050 AT4G02590.3 48.544 103 47 3 126 223 46 147 1.12e-14 72.4
Msa1195050 AT4G02590.2 48.544 103 47 3 126 223 109 210 1.83e-14 72.8
Msa1195050 AT4G02590.1 48.544 103 47 3 126 223 109 210 1.83e-14 72.8
Msa1195050 AT1G03040.1 48.544 103 47 3 126 223 107 208 4.60e-14 71.6
Msa1195050 AT1G03040.3 48.544 103 47 3 126 223 107 208 5.05e-14 71.6
Msa1195050 AT4G28800.1 44.000 75 41 1 161 235 252 325 1.42e-13 70.9
Msa1195050 AT2G20180.8 34.375 128 65 3 93 220 231 339 2.58e-13 69.7
Msa1195050 AT2G42280.1 50.000 64 32 0 158 221 279 342 4.34e-13 68.9
Msa1195050 AT1G51140.1 53.125 64 30 0 158 221 304 367 4.40e-13 69.3
Msa1195050 AT4G28815.2 51.724 58 27 1 161 218 71 127 4.46e-13 67.8
Msa1195050 AT1G03040.2 54.217 83 35 2 143 223 122 203 5.11e-13 68.6
Msa1195050 AT4G09180.1 46.269 67 36 0 156 222 182 248 7.84e-13 67.4
Msa1195050 AT2G42280.3 51.515 66 30 1 158 221 279 344 8.64e-13 68.2
Msa1195050 AT4G28800.2 45.833 72 37 2 161 231 264 334 1.02e-12 68.2
Msa1195050 AT4G28790.1 35.200 125 61 5 160 280 273 381 1.32e-12 67.8
Msa1195050 AT4G28815.1 51.724 58 27 1 161 218 147 203 1.49e-12 67.0
Msa1195050 AT2G46970.1 43.836 73 35 2 156 223 216 287 2.26e-12 67.0
Msa1195050 AT2G46970.2 43.836 73 35 2 156 223 185 256 2.62e-12 67.0
Msa1195050 AT2G46970.3 43.836 73 35 2 156 223 194 265 2.77e-12 67.0
Msa1195050 AT1G35460.1 46.154 65 35 0 158 222 181 245 5.39e-12 65.1
Msa1195050 AT4G33880.1 46.053 76 38 2 149 222 255 329 6.31e-12 65.5
Msa1195050 AT4G00050.2 47.692 65 33 1 158 222 105 168 1.28e-11 64.3
Msa1195050 AT2G14760.1 49.231 65 32 1 158 222 237 300 2.14e-11 63.9
Msa1195050 AT4G00050.1 47.692 65 33 1 158 222 207 270 2.19e-11 64.3
Msa1195050 AT1G27740.1 49.231 65 32 1 158 222 167 230 2.34e-11 63.2
Msa1195050 AT4G00050.3 47.692 65 33 1 158 222 207 270 2.47e-11 63.9
Msa1195050 AT4G36930.1 47.541 61 31 1 164 224 197 256 8.04e-11 62.4

Find 116 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCAATTTAGGTTAT+TGG 0.179282 8_1:+42812542 Msa1195050:intron
CCATACCTTTGTGTAGAAAA+TGG 0.194010 8_1:-42813628 None:intergenic
GTGTACTATAGTGGACTTTC+AGG 0.196499 8_1:+42813724 Msa1195050:three_prime_UTR
TGTTTAACACTTACATCTTT+TGG 0.232272 8_1:-42812797 None:intergenic
TTTCTTCAATTTAGGTTATT+GGG 0.256415 8_1:+42812543 Msa1195050:intron
CCGCAGTTTGGTAACGGTTT+AGG 0.282346 8_1:+42810880 Msa1195050:CDS
CAGTTTCCAGCGGCGATTAA+TGG 0.284846 8_1:+42810829 Msa1195050:CDS
TTTAGTTCCTGGTTGTAATA+AGG 0.288451 8_1:+42812349 Msa1195050:CDS
AGTTGAAAACGGTTCGGTTC+GGG 0.306795 8_1:+42810702 Msa1195050:five_prime_UTR
GGCATTGGCACCGCCATTAC+TGG 0.323699 8_1:-42811040 None:intergenic
CTCAATATTGTGTACTATAG+TGG 0.335669 8_1:+42813715 Msa1195050:three_prime_UTR
ATTCTACAGGATTTAGTTCC+TGG 0.338943 8_1:+42812338 Msa1195050:CDS
TTAGGACAGTTTGGTGAGTT+TGG 0.345423 8_1:+42810898 Msa1195050:CDS
AGAGAGAGAGAAAGAGTGTT+AGG 0.354588 8_1:-42810561 None:intergenic
CAACAGGCTGCTTCAATTTG+TGG 0.357110 8_1:+42813666 Msa1195050:three_prime_UTR
GAGTTGAAAACGGTTCGGTT+CGG 0.365096 8_1:+42810701 Msa1195050:five_prime_UTR
CATCGCTCCTGGATCCATTT+CGG 0.370295 8_1:-42810740 None:intergenic
CGTTTAGTTTAGCGGAGATC+TGG 0.375505 8_1:+42810806 Msa1195050:CDS
CAACAAACGTTTGATCTTGC+CGG 0.377074 8_1:+42813368 Msa1195050:CDS
AAGCAGTAAGCCACCTCCTT+TGG 0.378629 8_1:+42811905 Msa1195050:CDS
AATGGCGGCGGAGGTGGATT+GGG 0.382699 8_1:+42810847 Msa1195050:CDS
ACCTGCATATGTAACCATTC+TGG 0.392490 8_1:-42813440 None:intergenic
AGTTTGGACCCGGTTTGAAC+CGG 0.394572 8_1:+42810914 Msa1195050:CDS
CCCTCGTTCATCATCGCTCC+TGG 0.400423 8_1:-42810751 None:intergenic
ACATCCATGTTCGAGCTAGA+AGG 0.403285 8_1:+42811946 Msa1195050:CDS
TGGACAATAAACAGGCTAGA+AGG 0.405648 8_1:+42812291 Msa1195050:intron
CAGATCTCCGCTAAACTAAA+CGG 0.416576 8_1:-42810805 None:intergenic
GTTGAAGGAGAAGTCAGTTC+AGG 0.418689 8_1:+42811867 Msa1195050:CDS
GGAGCATTTGAAGGATGAAA+TGG 0.421937 8_1:-42813543 None:intergenic
TAATGGCGGCGGAGGTGGAT+TGG 0.422484 8_1:+42810846 Msa1195050:CDS
CATACCTTTGTGTAGAAAAT+GGG 0.425858 8_1:-42813627 None:intergenic
GCGATTAATGGCGGCGGAGG+TGG 0.426598 8_1:+42810841 Msa1195050:CDS
ATTACCATCCCGGTTCAAAC+CGG 0.435247 8_1:-42810923 None:intergenic
GGACTAAGGCGGCCGCAGTT+TGG 0.439857 8_1:+42810868 Msa1195050:CDS
GCGGAGGTGGATTGGGACTA+AGG 0.443060 8_1:+42810854 Msa1195050:CDS
TTGAAGTTAGTGAACCGAAA+TGG 0.445482 8_1:+42810726 Msa1195050:exon
CAGTTTGGTGAGTTTGGACC+CGG 0.446797 8_1:+42810904 Msa1195050:CDS
GGAAAACGGACTAAAGCATC+AGG 0.450766 8_1:+42811816 Msa1195050:CDS
CTTGTAGCTTGTGAAACAAA+TGG 0.451137 8_1:-42813395 None:intergenic
TACGACGCCGTTTAGTTTAG+CGG 0.455033 8_1:+42810798 Msa1195050:CDS
TGAAAGGATGAAAATTCTAC+AGG 0.461627 8_1:+42812325 Msa1195050:CDS
TAGTGAACCGAAATGGATCC+AGG 0.464407 8_1:+42810733 Msa1195050:exon
GGTTCGGTGCGTGATCTCCT+TGG 0.468651 8_1:-42810540 None:intergenic
GTCGTATTTCCATTCCCATT+CGG 0.470342 8_1:-42810781 None:intergenic
GGCGGTGATGGTAAAGTTGA+AGG 0.472669 8_1:+42811852 Msa1195050:CDS
CATCCATGTTCGAGCTAGAA+GGG 0.474849 8_1:+42811947 Msa1195050:CDS
GATTAATGTTGAGTTGAAAA+CGG 0.477674 8_1:+42810691 Msa1195050:five_prime_UTR
GGTTCATTTCCGAATGGGAA+TGG 0.479304 8_1:+42810772 Msa1195050:CDS
ACCAGAATGGTTACATATGC+AGG 0.483200 8_1:+42813439 Msa1195050:CDS
GGTAACGGTTTAGGACAGTT+TGG 0.484684 8_1:+42810889 Msa1195050:CDS
TATAATATAGGAGCATTTGA+AGG 0.491142 8_1:-42813552 None:intergenic
AACCATGGTGGTGTTGGTGG+TGG 0.493213 8_1:+42810970 Msa1195050:CDS
ACATGGATGTAATCTTGCTT+AGG 0.502301 8_1:-42811933 None:intergenic
ACGAGGGTTCATTTCCGAAT+GGG 0.502721 8_1:+42810767 Msa1195050:CDS
CCGCCGCCATTAATCGCCGC+TGG 0.503828 8_1:-42810835 None:intergenic
TTGAACCATGGTGGTGTTGG+TGG 0.507286 8_1:+42810967 Msa1195050:CDS
GCGGCGATTAATGGCGGCGG+AGG 0.511591 8_1:+42810838 Msa1195050:CDS
GCAGAGGTTCTTCACCAGAA+TGG 0.515410 8_1:+42813426 Msa1195050:CDS
TCGTGTTTGTTTGTGTAGCA+AGG 0.516464 8_1:+42813860 Msa1195050:three_prime_UTR
TGGATGTAATCTTGCTTAGG+AGG 0.520256 8_1:-42811930 None:intergenic
TGGAGGAAAGGCTTCAATGC+CGG 0.520377 8_1:-42812777 None:intergenic
AACAAGACTGAGGGCGGTGA+TGG 0.524946 8_1:+42811840 Msa1195050:CDS
GAGAGAAAGAGTGTTAGGTT+CGG 0.525245 8_1:-42810556 None:intergenic
ATGTTGAGTTGAAAACGGTT+CGG 0.525360 8_1:+42810696 Msa1195050:five_prime_UTR
GTTTGGACCCGGTTTGAACC+GGG 0.528926 8_1:+42810915 Msa1195050:CDS
TTAGGTTATTGGGAAAGCAT+TGG 0.529281 8_1:+42812553 Msa1195050:intron
GGTTTGAACCGGGATGGTAA+TGG 0.532358 8_1:+42810925 Msa1195050:CDS
TCTGGTGAAGAACCTCTGCT+TGG 0.539168 8_1:-42813422 None:intergenic
AAGTGTGTTTCCACCAGTAA+TGG 0.540169 8_1:+42811027 Msa1195050:CDS
AGGCGGCCGCAGTTTGGTAA+CGG 0.544003 8_1:+42810874 Msa1195050:CDS
GGACAATAAACAGGCTAGAA+GGG 0.544423 8_1:+42812292 Msa1195050:intron
GCACCATTCTCCACTGTCCA+AGG 0.555247 8_1:+42810523 None:intergenic
GGGAATGAAGAAGTGTCCAT+TGG 0.557216 8_1:-42813607 None:intergenic
CCAGCGGCGATTAATGGCGG+CGG 0.557594 8_1:+42810835 Msa1195050:CDS
ACTCCGGTCCATTACCATCC+CGG 0.557819 8_1:-42810933 None:intergenic
TTACATATGCAGGTAGGTGG+TGG 0.558363 8_1:+42813449 Msa1195050:CDS
CTTAAGGTGTTAAAGTCCAA+TGG 0.560546 8_1:+42813591 Msa1195050:three_prime_UTR
AGAATGATAGTGATGGAAAA+CGG 0.563521 8_1:+42811802 Msa1195050:intron
AACGAGGGTTCATTTCCGAA+TGG 0.564078 8_1:+42810766 Msa1195050:CDS
TTGTGAAACAAATGGCATGC+CGG 0.566973 8_1:-42813387 None:intergenic
TTAGGAGGGTCCAAAGGAGG+TGG 0.567088 8_1:-42811915 None:intergenic
GACCCCTTCTAGCTCGAACA+TGG 0.574237 8_1:-42811950 None:intergenic
GAACCGGGATGGTAATGGAC+CGG 0.574270 8_1:+42810930 Msa1195050:CDS
TTACCATCCCGGTTCAAACC+GGG 0.575921 8_1:-42810922 None:intergenic
GAAGGGAAAAGATTAGTGAA+AGG 0.577890 8_1:+42812309 Msa1195050:CDS
TTTCCAGCGGCGATTAATGG+CGG 0.585609 8_1:+42810832 Msa1195050:CDS
GTTAATTCAAGACTCAATAC+CGG 0.586424 8_1:+42812758 Msa1195050:CDS
ATCACTTCAGCGCCAAGTGG+AGG 0.597164 8_1:+42812604 Msa1195050:CDS
GCATCAGGGAACAAGACTGA+GGG 0.616203 8_1:+42811831 Msa1195050:CDS
TTCAAAACAACTCTTGACTC+CGG 0.616543 8_1:-42810949 None:intergenic
TCTTGCTTAGGAGGGTCCAA+AGG 0.620283 8_1:-42811921 None:intergenic
AACATTACCTTATTACAACC+AGG 0.621430 8_1:-42812356 None:intergenic
GGACCCGGTTTGAACCGGGA+TGG 0.621696 8_1:+42810919 Msa1195050:CDS
GGATGTAATCTTGCTTAGGA+GGG 0.631066 8_1:-42811929 None:intergenic
TCCAGGAGCGATGATGAACG+AGG 0.631852 8_1:+42810750 Msa1195050:CDS
TAATGGCGGTGCCAATGCCG+TGG 0.636011 8_1:+42811044 Msa1195050:CDS
TGCTTAGGAGGGTCCAAAGG+AGG 0.637170 8_1:-42811918 None:intergenic
ATCCATGTTCGAGCTAGAAG+GGG 0.638122 8_1:+42811948 Msa1195050:CDS
GCTACAAGAGAGCCAAGCAG+AGG 0.640109 8_1:+42813410 Msa1195050:CDS
GAGGTGGATTGGGACTAAGG+CGG 0.650298 8_1:+42810857 Msa1195050:CDS
ATTGGCACCGCCATTACTGG+TGG 0.652469 8_1:-42811037 None:intergenic
TGGTTACATATGCAGGTAGG+TGG 0.652770 8_1:+42813446 Msa1195050:CDS
AGCATCAGGGAACAAGACTG+AGG 0.656745 8_1:+42811830 Msa1195050:CDS
GGAGATCTGGCAGTTTCCAG+CGG 0.658016 8_1:+42810819 Msa1195050:CDS
TCAATCACTTCAGCGCCAAG+TGG 0.659625 8_1:+42812601 Msa1195050:CDS
TCAGGGAACAAGACTGAGGG+CGG 0.668095 8_1:+42811834 Msa1195050:CDS
ATAGAATAGATACCTCCACT+TGG 0.671733 8_1:-42812616 None:intergenic
TACCACCACCAACACCACCA+TGG 0.672358 8_1:-42810972 None:intergenic
TGTGTTTCCACCAGTAATGG+CGG 0.675613 8_1:+42811030 Msa1195050:CDS
AGTCAGTTCAGGAAAGCATG+CGG 0.677155 8_1:+42811878 Msa1195050:CDS
GAATGGTTACATATGCAGGT+AGG 0.689550 8_1:+42813443 Msa1195050:CDS
CCAGGAGCGATGATGAACGA+GGG 0.693487 8_1:+42810751 Msa1195050:CDS
TTACGCGTTCTGCAAGACTG+TGG 0.695452 8_1:-42811986 None:intergenic
GAAAACGGACTAAAGCATCA+GGG 0.713041 8_1:+42811817 Msa1195050:CDS
ATTGTGCAGAATGATAGTGA+TGG 0.726537 8_1:+42811795 Msa1195050:intron
CCTAAACCGTTACCAAACTG+CGG 0.757675 8_1:-42810880 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTATTTGTATTTTG+GGG + chr8_1:42811164-42811183 Msa1195050:intron 10.0%
!! TTTAATGAATATACTTAAAA+CGG + chr8_1:42811225-42811244 Msa1195050:intron 10.0%
!!! TGTGTTTTTTATTTTATTAT+TGG + chr8_1:42811311-42811330 Msa1195050:intron 10.0%
!! TAACTAAATTATTACAATAA+AGG - chr8_1:42811710-42811729 None:intergenic 10.0%
!! TTAATGGAATTATTATTATT+TGG + chr8_1:42811772-42811791 Msa1195050:intron 10.0%
!!! TCATTTTTGTTTTATAATAT+AGG - chr8_1:42813567-42813586 None:intergenic 10.0%
!!! TTTTTTTGAGTTATACTATT+TGG + chr8_1:42811092-42811111 Msa1195050:intron 15.0%
!!! TTCACTTTTGATTTTAAAAA+TGG + chr8_1:42811488-42811507 Msa1195050:intron 15.0%
!! TTAAGGAAAATGTAAATTTA+TGG + chr8_1:42812220-42812239 Msa1195050:intron 15.0%
!! ATAATAATAATCCAAATGAA+AGG + chr8_1:42812443-42812462 Msa1195050:intron 15.0%
!! AGTTTCAATATAAAAATCAA+GGG - chr8_1:42812824-42812843 None:intergenic 15.0%
!! ATCATTGTTTAAAAAACATT+TGG + chr8_1:42813305-42813324 Msa1195050:intron 15.0%
!! AAACAAAAATGATATACTTA+AGG + chr8_1:42813575-42813594 Msa1195050:three_prime_UTR 15.0%
!!! TCTCTAGTTTTTTTTTCTTT+CGG + chr8_1:42810601-42810620 Msa1195050:intron 20.0%
!! AAGAAAAAAAATGAATACCA+CGG - chr8_1:42811064-42811083 None:intergenic 20.0%
!!! GATTTTGCTTCATTTTTTTT+TGG + chr8_1:42811360-42811379 Msa1195050:intron 20.0%
!!! AATTTTTCTCCAGAATAATT+AGG - chr8_1:42811687-42811706 None:intergenic 20.0%
!! ATATGTGTATTTGATGTATT+TGG + chr8_1:42811733-42811752 Msa1195050:intron 20.0%
!! CTAAAAGAATTGTAAGTAAA+GGG - chr8_1:42812016-42812035 None:intergenic 20.0%
!! TCTAAAAGAATTGTAAGTAA+AGG - chr8_1:42812017-42812036 None:intergenic 20.0%
!!! ATGATGTTAAATCTTGTTTA+AGG + chr8_1:42812203-42812222 Msa1195050:intron 20.0%
!! TTTAGTAATTTCCTTTCATT+TGG - chr8_1:42812457-42812476 None:intergenic 20.0%
!!! TTTCTTCAATTTAGGTTATT+GGG + chr8_1:42812543-42812562 Msa1195050:intron 20.0%
!!! ATCTATTCTATTTCTGATTT+TGG + chr8_1:42812628-42812647 Msa1195050:intron 20.0%
!! GAGTTTCAATATAAAAATCA+AGG - chr8_1:42812825-42812844 None:intergenic 20.0%
!!! GGAAAATTTTCAAATAAAGA+GGG - chr8_1:42812873-42812892 None:intergenic 20.0%
!!! AGGAAAATTTTCAAATAAAG+AGG - chr8_1:42812874-42812893 None:intergenic 20.0%
!!! GATTAATGTTGAGTTGAAAA+CGG + chr8_1:42810691-42810710 Msa1195050:five_prime_UTR 25.0%
!! TTTGAGTTATACTATTTGGA+AGG + chr8_1:42811096-42811115 Msa1195050:intron 25.0%
!!! CATTGTTCAAGTTCTATTTT+TGG + chr8_1:42811267-42811286 Msa1195050:intron 25.0%
!!! CTTCATTTTTTTTTGGTACA+AGG + chr8_1:42811367-42811386 Msa1195050:intron 25.0%
! TCACAAAACGATAGAAAATT+GGG - chr8_1:42811612-42811631 None:intergenic 25.0%
!!! TCAAAATTTTGTTTCGAACT+TGG + chr8_1:42811645-42811664 Msa1195050:intron 25.0%
!! TTGATGTATTTGGAATTAGT+CGG + chr8_1:42811743-42811762 Msa1195050:intron 25.0%
!!! ACTCTTCTGTTATTGTTTTT+AGG + chr8_1:42812038-42812057 Msa1195050:intron 25.0%
!!! GTAAATTTATGGTTTTGTTG+CGG + chr8_1:42812231-42812250 Msa1195050:intron 25.0%
! GAAAGGAAATTACTAAAAGT+AGG + chr8_1:42812460-42812479 Msa1195050:intron 25.0%
! ATTGAGACTTTCTTCAATTT+AGG + chr8_1:42812535-42812554 Msa1195050:intron 25.0%
!! CTTTCTTCAATTTAGGTTAT+TGG + chr8_1:42812542-42812561 Msa1195050:intron 25.0%
!! TGTTTAACACTTACATCTTT+TGG - chr8_1:42812800-42812819 None:intergenic 25.0%
! TGAACATTGGATTAATCTAA+GGG - chr8_1:42813185-42813204 None:intergenic 25.0%
! TTGAACATTGGATTAATCTA+AGG - chr8_1:42813186-42813205 None:intergenic 25.0%
! GATAAATATACTTGATTGAG+AGG + chr8_1:42813221-42813240 Msa1195050:intron 25.0%
!! GAGGATACAGATTAAAATTT+TGG + chr8_1:42813240-42813259 Msa1195050:intron 25.0%
!! CATTTTATTATTACACGATG+AGG - chr8_1:42813506-42813525 None:intergenic 25.0%
!!! TATAATATAGGAGCATTTGA+AGG - chr8_1:42813555-42813574 None:intergenic 25.0%
!! TATTTTGGGGACTGATTAAT+TGG + chr8_1:42811177-42811196 Msa1195050:intron 30.0%
AAATGAAGCAAAATCTTGAG+CGG - chr8_1:42811355-42811374 None:intergenic 30.0%
! TTCACAAACTATTTTGCCTA+TGG + chr8_1:42811434-42811453 Msa1195050:intron 30.0%
AATGGTATGTGAACTTATTC+AGG + chr8_1:42811506-42811525 Msa1195050:intron 30.0%
! TATGTGAACTTATTCAGGTT+TGG + chr8_1:42811511-42811530 Msa1195050:intron 30.0%
GTCACAAAACGATAGAAAAT+TGG - chr8_1:42811613-42811632 None:intergenic 30.0%
AATTAGTCGGTGTGATTTAA+TGG + chr8_1:42811756-42811775 Msa1195050:intron 30.0%
! AGAATGATAGTGATGGAAAA+CGG + chr8_1:42811802-42811821 Msa1195050:intron 30.0%
TTAACAATTAGACAGACAGA+AGG - chr8_1:42812065-42812084 None:intergenic 30.0%
AACATTCCAATTAGAAACAG+AGG - chr8_1:42812269-42812288 None:intergenic 30.0%
!! TCTGTTTCTAATTGGAATGT+TGG + chr8_1:42812268-42812287 Msa1195050:intron 30.0%
TGAAAGGATGAAAATTCTAC+AGG + chr8_1:42812325-42812344 Msa1195050:CDS 30.0%
! TTTAGTTCCTGGTTGTAATA+AGG + chr8_1:42812349-42812368 Msa1195050:CDS 30.0%
AACATTACCTTATTACAACC+AGG - chr8_1:42812359-42812378 None:intergenic 30.0%
TGCTCTCATATTCACATAAA+CGG + chr8_1:42812401-42812420 Msa1195050:intron 30.0%
GTTAATTCAAGACTCAATAC+CGG + chr8_1:42812758-42812777 Msa1195050:CDS 30.0%
! TTAACACTTACATCTTTTGG+AGG - chr8_1:42812797-42812816 None:intergenic 30.0%
TACAGCTAAAGATTGAACAT+TGG - chr8_1:42813198-42813217 None:intergenic 30.0%
TGGAAAGAGAGAAAAAAACT+AGG - chr8_1:42813341-42813360 None:intergenic 30.0%
!!! TTTTTTCTCTCTTTCCAGTA+TGG + chr8_1:42813344-42813363 Msa1195050:intron 30.0%
CATACCTTTGTGTAGAAAAT+GGG - chr8_1:42813630-42813649 None:intergenic 30.0%
CTCAATATTGTGTACTATAG+TGG + chr8_1:42813715-42813734 Msa1195050:three_prime_UTR 30.0%
!!! CTTTCAGGCTCTTTTTTTTT+TGG + chr8_1:42813739-42813758 Msa1195050:three_prime_UTR 30.0%
!! ATGTTGAGTTGAAAACGGTT+CGG + chr8_1:42810696-42810715 Msa1195050:five_prime_UTR 35.0%
TTGAAGTTAGTGAACCGAAA+TGG + chr8_1:42810726-42810745 Msa1195050:exon 35.0%
TTCAAAACAACTCTTGACTC+CGG - chr8_1:42810952-42810971 None:intergenic 35.0%
!!! TCAAGAGTTGTTTTGAACCA+TGG + chr8_1:42810955-42810974 Msa1195050:CDS 35.0%
AAAAATGAATACCACGGCAT+TGG - chr8_1:42811058-42811077 None:intergenic 35.0%
AATGAAGCAAAATCTTGAGC+GGG - chr8_1:42811354-42811373 None:intergenic 35.0%
TGTTGAGATTACACTTCCAT+AGG - chr8_1:42811453-42811472 None:intergenic 35.0%
GATGTCTTTGCTACAACATA+AGG + chr8_1:42811553-42811572 Msa1195050:intron 35.0%
! GAGCGAAGTAGTCAAAATTT+TGG - chr8_1:42811580-42811599 None:intergenic 35.0%
GATGGTTGTCCTAATTATTC+TGG + chr8_1:42811675-42811694 Msa1195050:intron 35.0%
! ATTGTGCAGAATGATAGTGA+TGG + chr8_1:42811795-42811814 Msa1195050:intron 35.0%
ACATGGATGTAATCTTGCTT+AGG - chr8_1:42811936-42811955 None:intergenic 35.0%
!! TCTATGCCTCTGTTTCTAAT+TGG + chr8_1:42812260-42812279 Msa1195050:intron 35.0%
GTTTCTAATTGGAATGTTGG+TGG + chr8_1:42812271-42812290 Msa1195050:intron 35.0%
! AATGTTGGTGGACAATAAAC+AGG + chr8_1:42812283-42812302 Msa1195050:intron 35.0%
GAAGGGAAAAGATTAGTGAA+AGG + chr8_1:42812309-42812328 Msa1195050:CDS 35.0%
! ATTCTACAGGATTTAGTTCC+TGG + chr8_1:42812338-42812357 Msa1195050:CDS 35.0%
!! AGTAGGAAAAACTTGCTACT+TGG + chr8_1:42812477-42812496 Msa1195050:intron 35.0%
! TTAGGTTATTGGGAAAGCAT+TGG + chr8_1:42812553-42812572 Msa1195050:intron 35.0%
ATAGAATAGATACCTCCACT+TGG - chr8_1:42812619-42812638 None:intergenic 35.0%
!! ACTTACATCTTTTGGAGGAA+AGG - chr8_1:42812792-42812811 None:intergenic 35.0%
TGAATAACGTCTGCAAAAGA+TGG - chr8_1:42812980-42812999 None:intergenic 35.0%
ATGAATGATAGCTTCTCACT+AGG + chr8_1:42813081-42813100 Msa1195050:intron 35.0%
TGTTCAATCTTTAGCTGTAG+AGG + chr8_1:42813199-42813218 Msa1195050:intron 35.0%
! CTTGTAGCTTGTGAAACAAA+TGG - chr8_1:42813398-42813417 None:intergenic 35.0%
! CTTAAGGTGTTAAAGTCCAA+TGG + chr8_1:42813591-42813610 Msa1195050:three_prime_UTR 35.0%
! CATTCCCATTTTCTACACAA+AGG + chr8_1:42813623-42813642 Msa1195050:three_prime_UTR 35.0%
CCATACCTTTGTGTAGAAAA+TGG - chr8_1:42813631-42813650 None:intergenic 35.0%
! CCATTTTCTACACAAAGGTA+TGG + chr8_1:42813628-42813647 Msa1195050:three_prime_UTR 35.0%
!!! CAGGCTCTTTTTTTTTTGGT+TGG + chr8_1:42813743-42813762 Msa1195050:three_prime_UTR 35.0%
!! GAGAGAAAGAGTGTTAGGTT+CGG - chr8_1:42810559-42810578 None:intergenic 40.0%
!! AGAGAGAGAGAAAGAGTGTT+AGG - chr8_1:42810564-42810583 None:intergenic 40.0%
GTCGTATTTCCATTCCCATT+CGG - chr8_1:42810784-42810803 None:intergenic 40.0%
CAGATCTCCGCTAAACTAAA+CGG - chr8_1:42810808-42810827 None:intergenic 40.0%
! TTAGGACAGTTTGGTGAGTT+TGG + chr8_1:42810898-42810917 Msa1195050:CDS 40.0%
!!! AGAGTTGTTTTGAACCATGG+TGG + chr8_1:42810958-42810977 Msa1195050:CDS 40.0%
AAGTGTGTTTCCACCAGTAA+TGG + chr8_1:42811027-42811046 Msa1195050:CDS 40.0%
TTCGAACTTGGATGTCTAGA+TGG + chr8_1:42811657-42811676 Msa1195050:intron 40.0%
!! GAAAACGGACTAAAGCATCA+GGG + chr8_1:42811817-42811836 Msa1195050:CDS 40.0%
GGATGTAATCTTGCTTAGGA+GGG - chr8_1:42811932-42811951 None:intergenic 40.0%
TGGATGTAATCTTGCTTAGG+AGG - chr8_1:42811933-42811952 None:intergenic 40.0%
CTATGATGTCACAGCCAAAA+CGG - chr8_1:42812132-42812151 None:intergenic 40.0%
TCATAGCAACGATTGTAGTG+CGG - chr8_1:42812187-42812206 None:intergenic 40.0%
TGGACAATAAACAGGCTAGA+AGG + chr8_1:42812291-42812310 Msa1195050:intron 40.0%
GGACAATAAACAGGCTAGAA+GGG + chr8_1:42812292-42812311 Msa1195050:intron 40.0%
ACTCACGAGTATAGTAGTTC+TGG + chr8_1:42812917-42812936 Msa1195050:intron 40.0%
TTTAAGAAGCTTGCAACCTC+TGG + chr8_1:42813124-42813143 Msa1195050:intron 40.0%
! CAAACGTTTGTTGACCATAC+TGG - chr8_1:42813361-42813380 None:intergenic 40.0%
CAACAAACGTTTGATCTTGC+CGG + chr8_1:42813368-42813387 Msa1195050:CDS 40.0%
TTGTGAAACAAATGGCATGC+CGG - chr8_1:42813390-42813409 None:intergenic 40.0%
ACCAGAATGGTTACATATGC+AGG + chr8_1:42813439-42813458 Msa1195050:CDS 40.0%
ACCTGCATATGTAACCATTC+TGG - chr8_1:42813443-42813462 None:intergenic 40.0%
GAATGGTTACATATGCAGGT+AGG + chr8_1:42813443-42813462 Msa1195050:CDS 40.0%
! GGAGCATTTGAAGGATGAAA+TGG - chr8_1:42813546-42813565 None:intergenic 40.0%
! GAGCTGTTACTGTTTTCAAC+AGG + chr8_1:42813650-42813669 Msa1195050:three_prime_UTR 40.0%
!! GTGTACTATAGTGGACTTTC+AGG + chr8_1:42813724-42813743 Msa1195050:three_prime_UTR 40.0%
TCGTGTTTGTTTGTGTAGCA+AGG + chr8_1:42813860-42813879 Msa1195050:three_prime_UTR 40.0%
!! GAGTTGAAAACGGTTCGGTT+CGG + chr8_1:42810701-42810720 Msa1195050:five_prime_UTR 45.0%
!! AGTTGAAAACGGTTCGGTTC+GGG + chr8_1:42810702-42810721 Msa1195050:five_prime_UTR 45.0%
TAGTGAACCGAAATGGATCC+AGG + chr8_1:42810733-42810752 Msa1195050:exon 45.0%
AACGAGGGTTCATTTCCGAA+TGG + chr8_1:42810766-42810785 Msa1195050:CDS 45.0%
ACGAGGGTTCATTTCCGAAT+GGG + chr8_1:42810767-42810786 Msa1195050:CDS 45.0%
GGTTCATTTCCGAATGGGAA+TGG + chr8_1:42810772-42810791 Msa1195050:CDS 45.0%
! TACGACGCCGTTTAGTTTAG+CGG + chr8_1:42810798-42810817 Msa1195050:CDS 45.0%
! CGTTTAGTTTAGCGGAGATC+TGG + chr8_1:42810806-42810825 Msa1195050:CDS 45.0%
CCTAAACCGTTACCAAACTG+CGG - chr8_1:42810883-42810902 None:intergenic 45.0%
! GGTAACGGTTTAGGACAGTT+TGG + chr8_1:42810889-42810908 Msa1195050:CDS 45.0%
ATTACCATCCCGGTTCAAAC+CGG - chr8_1:42810926-42810945 None:intergenic 45.0%
!! GTTTTGAACCATGGTGGTGT+TGG + chr8_1:42810964-42810983 Msa1195050:CDS 45.0%
TGTGTTTCCACCAGTAATGG+CGG + chr8_1:42811030-42811049 Msa1195050:CDS 45.0%
! CAGGTTTGGTCGCAATTTCA+AGG + chr8_1:42811525-42811544 Msa1195050:intron 45.0%
!! GGAAAACGGACTAAAGCATC+AGG + chr8_1:42811816-42811835 Msa1195050:CDS 45.0%
GTTGAAGGAGAAGTCAGTTC+AGG + chr8_1:42811867-42811886 Msa1195050:CDS 45.0%
! AGTCAGTTCAGGAAAGCATG+CGG + chr8_1:42811878-42811897 Msa1195050:CDS 45.0%
ACATCCATGTTCGAGCTAGA+AGG + chr8_1:42811946-42811965 Msa1195050:CDS 45.0%
CATCCATGTTCGAGCTAGAA+GGG + chr8_1:42811947-42811966 Msa1195050:CDS 45.0%
ATCCATGTTCGAGCTAGAAG+GGG + chr8_1:42811948-42811967 Msa1195050:CDS 45.0%
!!! CGTTTTGGCTGTGACATCAT+AGG + chr8_1:42812130-42812149 Msa1195050:intron 45.0%
GTGAGTCATGTCTTGTCAGA+AGG - chr8_1:42812894-42812913 None:intergenic 45.0%
AACCTCTGGTCTCTGCATAA+TGG + chr8_1:42813138-42813157 Msa1195050:intron 45.0%
ACCTCTGGTCTCTGCATAAT+GGG + chr8_1:42813139-42813158 Msa1195050:intron 45.0%
TGGTTACATATGCAGGTAGG+TGG + chr8_1:42813446-42813465 Msa1195050:CDS 45.0%
TTACATATGCAGGTAGGTGG+TGG + chr8_1:42813449-42813468 Msa1195050:CDS 45.0%
!! GGGAATGAAGAAGTGTCCAT+TGG - chr8_1:42813610-42813629 None:intergenic 45.0%
CAACAGGCTGCTTCAATTTG+TGG + chr8_1:42813666-42813685 Msa1195050:three_prime_UTR 45.0%
!!! AAATTAAATTATTTGTATTT+TGG + chr8_1:42811162-42811181 Msa1195050:intron 5.0%
!!! AATTAAATTATTTGTATTTT+GGG + chr8_1:42811163-42811182 Msa1195050:intron 5.0%
CATCGCTCCTGGATCCATTT+CGG - chr8_1:42810743-42810762 None:intergenic 50.0%
CAGTTTCCAGCGGCGATTAA+TGG + chr8_1:42810829-42810848 Msa1195050:CDS 50.0%
TTTCCAGCGGCGATTAATGG+CGG + chr8_1:42810832-42810851 Msa1195050:CDS 50.0%
!! CCGCAGTTTGGTAACGGTTT+AGG + chr8_1:42810880-42810899 Msa1195050:CDS 50.0%
! CAGTTTGGTGAGTTTGGACC+CGG + chr8_1:42810904-42810923 Msa1195050:CDS 50.0%
! AGTTTGGACCCGGTTTGAAC+CGG + chr8_1:42810914-42810933 Msa1195050:CDS 50.0%
TTACCATCCCGGTTCAAACC+GGG - chr8_1:42810925-42810944 None:intergenic 50.0%
GGTTTGAACCGGGATGGTAA+TGG + chr8_1:42810925-42810944 Msa1195050:CDS 50.0%
! TTGAACCATGGTGGTGTTGG+TGG + chr8_1:42810967-42810986 Msa1195050:CDS 50.0%
AGCATCAGGGAACAAGACTG+AGG + chr8_1:42811830-42811849 Msa1195050:CDS 50.0%
GCATCAGGGAACAAGACTGA+GGG + chr8_1:42811831-42811850 Msa1195050:CDS 50.0%
! GGCGGTGATGGTAAAGTTGA+AGG + chr8_1:42811852-42811871 Msa1195050:CDS 50.0%
AAGCAGTAAGCCACCTCCTT+TGG + chr8_1:42811905-42811924 Msa1195050:CDS 50.0%
TCTTGCTTAGGAGGGTCCAA+AGG - chr8_1:42811924-42811943 None:intergenic 50.0%
TTACGCGTTCTGCAAGACTG+TGG - chr8_1:42811989-42812008 None:intergenic 50.0%
!!! TGAGTTGAGAAGCGCCGTTT+TGG + chr8_1:42812115-42812134 Msa1195050:intron 50.0%
TCAATCACTTCAGCGCCAAG+TGG + chr8_1:42812601-42812620 Msa1195050:CDS 50.0%
TGGAGGAAAGGCTTCAATGC+CGG - chr8_1:42812780-42812799 None:intergenic 50.0%
TCTGGTGAAGAACCTCTGCT+TGG - chr8_1:42813425-42813444 None:intergenic 50.0%
GCAGAGGTTCTTCACCAGAA+TGG + chr8_1:42813426-42813445 Msa1195050:CDS 50.0%
TCCAGGAGCGATGATGAACG+AGG + chr8_1:42810750-42810769 Msa1195050:CDS 55.0%
CCAGGAGCGATGATGAACGA+GGG + chr8_1:42810751-42810770 Msa1195050:CDS 55.0%
GGAGATCTGGCAGTTTCCAG+CGG + chr8_1:42810819-42810838 Msa1195050:CDS 55.0%
!! GAGGTGGATTGGGACTAAGG+CGG + chr8_1:42810857-42810876 Msa1195050:CDS 55.0%
! GTTTGGACCCGGTTTGAACC+GGG + chr8_1:42810915-42810934 Msa1195050:CDS 55.0%
!! GAACCGGGATGGTAATGGAC+CGG + chr8_1:42810930-42810949 Msa1195050:CDS 55.0%
ACTCCGGTCCATTACCATCC+CGG - chr8_1:42810936-42810955 None:intergenic 55.0%
!! AACCATGGTGGTGTTGGTGG+TGG + chr8_1:42810970-42810989 Msa1195050:CDS 55.0%
TACCACCACCAACACCACCA+TGG - chr8_1:42810975-42810994 None:intergenic 55.0%
ATTGGCACCGCCATTACTGG+TGG - chr8_1:42811040-42811059 None:intergenic 55.0%
TCAGGGAACAAGACTGAGGG+CGG + chr8_1:42811834-42811853 Msa1195050:CDS 55.0%
AACAAGACTGAGGGCGGTGA+TGG + chr8_1:42811840-42811859 Msa1195050:CDS 55.0%
TTAGGAGGGTCCAAAGGAGG+TGG - chr8_1:42811918-42811937 None:intergenic 55.0%
TGCTTAGGAGGGTCCAAAGG+AGG - chr8_1:42811921-42811940 None:intergenic 55.0%
!! GACCCCTTCTAGCTCGAACA+TGG - chr8_1:42811953-42811972 None:intergenic 55.0%
ATCACTTCAGCGCCAAGTGG+AGG + chr8_1:42812604-42812623 Msa1195050:CDS 55.0%
GCCCATTATGCAGAGACCAG+AGG - chr8_1:42813143-42813162 None:intergenic 55.0%
GCTACAAGAGAGCCAAGCAG+AGG + chr8_1:42813410-42813429 Msa1195050:CDS 55.0%
!! GGTTCGGTGCGTGATCTCCT+TGG - chr8_1:42810543-42810562 None:intergenic 60.0%
CCCTCGTTCATCATCGCTCC+TGG - chr8_1:42810754-42810773 None:intergenic 60.0%
TAATGGCGGCGGAGGTGGAT+TGG + chr8_1:42810846-42810865 Msa1195050:CDS 60.0%
! AATGGCGGCGGAGGTGGATT+GGG + chr8_1:42810847-42810866 Msa1195050:CDS 60.0%
!! GCGGAGGTGGATTGGGACTA+AGG + chr8_1:42810854-42810873 Msa1195050:CDS 60.0%
AGGCGGCCGCAGTTTGGTAA+CGG + chr8_1:42810874-42810893 Msa1195050:CDS 60.0%
!! GGCATTGGCACCGCCATTAC+TGG - chr8_1:42811043-42811062 None:intergenic 60.0%
! TAATGGCGGTGCCAATGCCG+TGG + chr8_1:42811044-42811063 Msa1195050:CDS 60.0%
CCAGCGGCGATTAATGGCGG+CGG + chr8_1:42810835-42810854 Msa1195050:CDS 65.0%
GCGATTAATGGCGGCGGAGG+TGG + chr8_1:42810841-42810860 Msa1195050:CDS 65.0%
GGACTAAGGCGGCCGCAGTT+TGG + chr8_1:42810868-42810887 Msa1195050:CDS 65.0%
! GGACCCGGTTTGAACCGGGA+TGG + chr8_1:42810919-42810938 Msa1195050:CDS 65.0%
CCGCCGCCATTAATCGCCGC+TGG - chr8_1:42810838-42810857 None:intergenic 70.0%
GCGGCGATTAATGGCGGCGG+AGG + chr8_1:42810838-42810857 Msa1195050:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 42810538 42813915 42810538 ID=Msa1195050;Name=Msa1195050
chr8_1 mRNA 42810538 42813915 42810538 ID=Msa1195050-mRNA-1;Parent=Msa1195050;Name=Msa1195050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|1|1|1|0.83|0.71|7|425|285
chr8_1 exon 42810538 42810587 42810538 ID=Msa1195050-mRNA-1:exon:13784;Parent=Msa1195050-mRNA-1
chr8_1 exon 42810608 42811065 42810608 ID=Msa1195050-mRNA-1:exon:13785;Parent=Msa1195050-mRNA-1
chr8_1 exon 42811804 42812004 42811804 ID=Msa1195050-mRNA-1:exon:13786;Parent=Msa1195050-mRNA-1
chr8_1 exon 42812305 42812370 42812305 ID=Msa1195050-mRNA-1:exon:13787;Parent=Msa1195050-mRNA-1
chr8_1 exon 42812557 42812625 42812557 ID=Msa1195050-mRNA-1:exon:13788;Parent=Msa1195050-mRNA-1
chr8_1 exon 42812734 42812805 42812734 ID=Msa1195050-mRNA-1:exon:13789;Parent=Msa1195050-mRNA-1
chr8_1 exon 42813362 42813915 42813362 ID=Msa1195050-mRNA-1:exon:13790;Parent=Msa1195050-mRNA-1
chr8_1 five_prime_UTR 42810538 42810587 42810538 ID=Msa1195050-mRNA-1:five_prime_utr;Parent=Msa1195050-mRNA-1
chr8_1 five_prime_UTR 42810608 42810744 42810608 ID=Msa1195050-mRNA-1:five_prime_utr;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42810745 42811065 42810745 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42811804 42812004 42811804 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42812305 42812370 42812305 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42812557 42812625 42812557 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42812734 42812805 42812734 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 CDS 42813362 42813490 42813362 ID=Msa1195050-mRNA-1:cds;Parent=Msa1195050-mRNA-1
chr8_1 three_prime_UTR 42813491 42813915 42813491 ID=Msa1195050-mRNA-1:three_prime_utr;Parent=Msa1195050-mRNA-1
Gene Sequence

>Msa1195050

ATGGATCCAGGAGCGATGATGAACGAGGGTTCATTTCCGAATGGGAATGGAAATACGACGCCGTTTAGTTTAGCGGAGATCTGGCAGTTTCCAGCGGCGATTAATGGCGGCGGAGGTGGATTGGGACTAAGGCGGCCGCAGTTTGGTAACGGTTTAGGACAGTTTGGTGAGTTTGGACCCGGTTTGAACCGGGATGGTAATGGACCGGAGTCAAGAGTTGTTTTGAACCATGGTGGTGTTGGTGGTGGTAAGAAGAGACGTGACTCTGAAGATGATTCTGCTAAGTGTGTTTCCACCAGTAATGGCGGTGCCAATGCCGTGAATGATAGTGATGGAAAACGGACTAAAGCATCAGGGAACAAGACTGAGGGCGGTGATGGTAAAGTTGAAGGAGAAGTCAGTTCAGGAAAGCATGCGGAGCAAAGCAGTAAGCCACCTCCTTTGGACCCTCCTAAGCAAGATTACATCCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGCGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTACAGGATTTAGTTCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTGCTTGATGAGATAATTAATTATATTCAATCACTTCAGCGCCAAGTGGAGTTTTTATCGATGAAACTTGAAGCAGTTAATTCAAGACTCAATACCGGCATTGAAGCCTTTCCTCCAAAAGATTATGGTCAACAAACGTTTGATCTTGCCGGCATGCCATTTGTTTCACAAGCTACAAGAGAGCCAAGCAGAGGTTCTTCACCAGAATGGTTACATATGCAGGTAGGTGGTGGTTTCGAAAGAACGACGTAG
Protein sequence

>Msa1195050

MDPGAMMNEGSFPNGNGNTTPFSLAEIWQFPAAINGGGGGLGLRRPQFGNGLGQFGEFGPGLNRDGNGPESRVVLNHGGVGGGKKRRDSEDDSAKCVSTSNGGANAVNDSDGKRTKASGNKTEGGDGKVEGEVSSGKHAEQSSKPPPLDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQATREPSRGSSPEWLHMQVGGGFERTT*