AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1195380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195380 MtrunA17_Chr8g0340411 87.742 155 19 0 12 166 678 832 6.74e-92 284
Msa1195380 MtrunA17_Chr2g0331131 76.129 155 37 0 12 166 682 836 5.61e-81 255
Msa1195380 MtrunA17_Chr3g0140351 83.582 134 20 1 33 166 704 835 4.48e-77 245
Msa1195380 MtrunA17_Chr2g0292391 63.971 136 47 1 33 166 701 836 6.20e-59 196
Msa1195380 MtrunA17_Chr4g0028991 63.910 133 47 1 35 166 714 846 3.52e-56 188
Msa1195380 MtrunA17_Chr2g0326731 59.091 132 54 0 35 166 708 839 2.46e-54 183
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1195380 AT1G52150.2 75.159 157 39 0 10 166 681 837 3.76e-82 259
Msa1195380 AT1G52150.1 75.159 157 39 0 10 166 680 836 3.95e-82 259
Msa1195380 AT4G32880.1 65.000 160 51 3 9 166 677 833 1.08e-66 217
Msa1195380 AT5G60690.1 64.234 137 44 2 35 166 706 842 9.28e-54 182
Msa1195380 AT1G30490.1 60.294 136 50 2 35 166 706 841 4.75e-52 177
Msa1195380 AT2G34710.1 55.696 158 64 3 15 166 695 852 5.14e-52 177
Msa1195380 AT1G52150.3 67.890 109 35 0 10 118 680 788 2.67e-45 158

Find 46 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGACCTGTTGAATAATC+TGG 0.306622 8_1:+43297243 None:intergenic
CCTCGACGAGGGCTTTCTAT+TGG 0.323663 8_1:+43301957 None:intergenic
CTGGATTTGCTCTGAAGACT+TGG 0.355978 8_1:-43296824 Msa1195380:three_prime_UTR
TGACATTATGTTCAGAGTAT+AGG 0.368736 8_1:-43296919 Msa1195380:three_prime_UTR
TTTGCTTTATGTTTGTGAAC+TGG 0.383504 8_1:-43296951 Msa1195380:CDS
CTAGAAATAATTTGCACATT+GGG 0.413661 8_1:-43296727 Msa1195380:three_prime_UTR
TTCTAGCGCAAAATATTAGC+TGG 0.424273 8_1:+43296744 None:intergenic
AATAATTTGCACATTGGGTG+TGG 0.445303 8_1:-43296722 Msa1195380:three_prime_UTR
TTCACTTTCTCAAACCAGGC+AGG 0.455998 8_1:-43297365 Msa1195380:CDS
CCAGCATGTCAAGCCCTGCC+TGG 0.459209 8_1:+43297351 None:intergenic
GAGAAAATATTTGATGATAA+TGG 0.466405 8_1:-43297293 Msa1195380:CDS
CCAGGCAGGGCTTGACATGC+TGG 0.469882 8_1:-43297351 Msa1195380:CDS
CGAGAGAGCTGTTGCTTGGA+AGG 0.471268 8_1:-43297004 Msa1195380:CDS
ACAATACAGCATAAATGTCT+TGG 0.473308 8_1:+43296868 None:intergenic
TGCATTACAAGATATAAGTC+TGG 0.474357 8_1:-43297315 Msa1195380:CDS
TGTATTATGTTGCACTCTAA+AGG 0.481143 8_1:-43297756 Msa1195380:intron
GTAGACCTGTTGAATAATCT+GGG 0.486629 8_1:+43297244 None:intergenic
ACGGTCTCACTTTGTTTGAT+CGG 0.498605 8_1:-43301923 Msa1195380:intron
CATACGAGAGAGCTGTTGCT+TGG 0.500411 8_1:-43297008 Msa1195380:CDS
TGAAGGAATAAAAGCAACAT+AGG 0.500690 8_1:+43296771 None:intergenic
CCCTTCAGTTTCACCAAAGG+AGG 0.534641 8_1:+43301981 None:intergenic
GCTAGAAATAATTTGCACAT+TGG 0.537631 8_1:-43296728 Msa1195380:three_prime_UTR
CTACTTAAATCTAATGCTGA+AGG 0.546258 8_1:-43297821 Msa1195380:CDS
ACAGCTCTCTCGTATGAGAC+AGG 0.550158 8_1:+43297015 None:intergenic
TGGTATTTGTCTCTCAAGCA+TGG 0.550328 8_1:-43297043 Msa1195380:CDS
AAATATTAGCTGGAGAATGA+AGG 0.552268 8_1:+43296754 None:intergenic
TCCTCCTTTGGTGAAACTGA+AGG 0.552387 8_1:-43301982 Msa1195380:CDS
TTTCTTCATCCCCTCGACGA+GGG 0.561718 8_1:+43301946 None:intergenic
ATAATTTGCACATTGGGTGT+GGG 0.565722 8_1:-43296721 None:intergenic
CGTCGAGGGGATGAAGAAAA+CGG 0.567296 8_1:-43301942 Msa1195380:CDS
CCTCCTTTGGTGAAACTGAA+GGG 0.570560 8_1:-43301981 Msa1195380:CDS
CAATAGAAAGCCCTCGTCGA+GGG 0.575193 8_1:-43301956 Msa1195380:CDS
TCACTTTCTCAAACCAGGCA+GGG 0.582033 8_1:-43297364 Msa1195380:CDS
GGTCCCTTCAGTTTCACCAA+AGG 0.584407 8_1:+43301978 None:intergenic
TTGTAGATGCTACTTAGGCG+TGG 0.590476 8_1:-43297846 Msa1195380:intron
AGTGTTCACTTTCTCAAACC+AGG 0.592651 8_1:-43297369 Msa1195380:CDS
GGTATTTGTCTCTCAAGCAT+GGG 0.600880 8_1:-43297042 Msa1195380:CDS
AATAGAAAGCCCTCGTCGAG+GGG 0.625470 8_1:-43301955 Msa1195380:CDS
AGCATCAGAGTGGTGCCACA+AGG 0.633858 8_1:+43297778 None:intergenic
TAGACCTGTTGAATAATCTG+GGG 0.651755 8_1:+43297245 None:intergenic
AATCTGTACTCAAGTCCTTG+TGG 0.653586 8_1:-43297793 Msa1195380:CDS
CCAATAGAAAGCCCTCGTCG+AGG 0.661081 8_1:-43301957 Msa1195380:CDS
CTGAACATAATGTCAAACAA+AGG 0.670183 8_1:+43296927 None:intergenic
AGACCTGTTGAATAATCTGG+GGG 0.704064 8_1:+43297246 None:intergenic
AACATAATACAGCATCAGAG+TGG 0.704741 8_1:+43297768 None:intergenic
TGGTTTGAGAAAGTGAACAC+TGG 0.711249 8_1:+43297371 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAT+CGG + chr8_1:43301527-43301546 None:intergenic 0.0%
!! ATATATCACTATTTATAAAA+TGG + chr8_1:43297398-43297417 None:intergenic 10.0%
!! ATCAATTAGAATAAAATGTA+TGG + chr8_1:43297127-43297146 None:intergenic 15.0%
!! AGAAGAAAATTAAATGATAA+AGG + chr8_1:43297258-43297277 None:intergenic 15.0%
!!! TTTACAATTTATTTTTCTTC+TGG - chr8_1:43297332-43297351 Msa1195380:CDS 15.0%
!! TATAAATAGAACATATTAGT+AGG - chr8_1:43297436-43297455 Msa1195380:intron 15.0%
!! ATATTTACAAAATCAATCTT+TGG + chr8_1:43299312-43299331 None:intergenic 15.0%
!!! ATTTTGTAAATATTCCTAAT+TGG - chr8_1:43299319-43299338 Msa1195380:intron 15.0%
!! AAATATTGCATTAATAATAG+AGG - chr8_1:43299366-43299385 Msa1195380:intron 15.0%
!! ATTTAATGCTCAAATTTAAT+AGG - chr8_1:43300804-43300823 Msa1195380:intron 15.0%
!! AATTAGTTGAACTATAAAAT+TGG - chr8_1:43301089-43301108 Msa1195380:intron 15.0%
!! ATTAGTTGAACTATAAAATT+GGG - chr8_1:43301090-43301109 Msa1195380:intron 15.0%
!! ATTCTAATTGATCATACAAT+TGG - chr8_1:43297135-43297154 Msa1195380:intron 20.0%
!! AAAATTAAATGATAAAGGAG+TGG + chr8_1:43297253-43297272 None:intergenic 20.0%
!!! TTTTTTCTAAAGTAGTTTAG+TGG + chr8_1:43297507-43297526 None:intergenic 20.0%
!! AAAGAATATTAGTAAAGAAG+TGG - chr8_1:43298052-43298071 Msa1195380:intron 20.0%
!! AAGAATATTAGTAAAGAAGT+GGG - chr8_1:43298053-43298072 Msa1195380:intron 20.0%
!! GCTAAATGAATATTCTTTAT+TGG - chr8_1:43299196-43299215 Msa1195380:intron 20.0%
!! TAAATATTCCTAATTGGTAT+TGG - chr8_1:43299325-43299344 Msa1195380:intron 20.0%
!!! ATGAAGATTGGATTAATTTT+TGG - chr8_1:43299805-43299824 Msa1195380:intron 20.0%
!!! TACTCCTTTCAAATTTTTTA+AGG - chr8_1:43299917-43299936 Msa1195380:intron 20.0%
!! CAAACCTTAAAAAATTTGAA+AGG + chr8_1:43299924-43299943 None:intergenic 20.0%
!!! CTTTCAAATTTTTTAAGGTT+TGG - chr8_1:43299922-43299941 Msa1195380:intron 20.0%
!!! TAAAAAATGCCTTTAAGATT+TGG - chr8_1:43300042-43300061 Msa1195380:intron 20.0%
!!! AAAAACTATTTCTTTTTTGC+AGG - chr8_1:43300322-43300341 Msa1195380:intron 20.0%
!!! GCATATTTTATCTTATTTTC+AGG - chr8_1:43300385-43300404 Msa1195380:intron 20.0%
!!! ACACTTTTATCAAACTTATT+GGG - chr8_1:43300586-43300605 Msa1195380:intron 20.0%
!!! CAAATTGATTTCTATTTCAT+AGG - chr8_1:43300995-43301014 Msa1195380:intron 20.0%
!! TTAGTTGAACTATAAAATTG+GGG - chr8_1:43301091-43301110 Msa1195380:intron 20.0%
!!! GAGAAAATATTTGATGATAA+TGG - chr8_1:43301428-43301447 Msa1195380:intron 20.0%
!! ATTATAAAGCTTGAAAATGA+TGG + chr8_1:43301602-43301621 None:intergenic 20.0%
!! AAACCCTGTTTTATAAGAAT+CGG - chr8_1:43296954-43296973 Msa1195380:CDS 25.0%
! AAAGCTTATATTATGCATAC+GGG + chr8_1:43297482-43297501 None:intergenic 25.0%
! CAAAGCTTATATTATGCATA+CGG + chr8_1:43297483-43297502 None:intergenic 25.0%
!! ATTTGAAGTCAAAAGTCAAA+CGG - chr8_1:43297539-43297558 Msa1195380:intron 25.0%
!!! AAACGGATTTTAGGAAAATA+TGG - chr8_1:43297556-43297575 Msa1195380:intron 25.0%
!!! AACGGATTTTAGGAAAATAT+GGG - chr8_1:43297557-43297576 Msa1195380:intron 25.0%
! AAATCAAACACATTGTGTAA+TGG + chr8_1:43298320-43298339 None:intergenic 25.0%
! ATTCTTTATTGGAATATCAG+AGG - chr8_1:43299207-43299226 Msa1195380:intron 25.0%
! CAATAAAAATAAGCATAGGT+TGG + chr8_1:43299284-43299303 None:intergenic 25.0%
!!! ACCTATGCTTATTTTTATTG+CGG - chr8_1:43299284-43299303 Msa1195380:intron 25.0%
! TATTTAGTAACACCAATTGT+CGG + chr8_1:43299351-43299370 None:intergenic 25.0%
! AATTCAGCAGTTAATTGATT+CGG - chr8_1:43300127-43300146 Msa1195380:intron 25.0%
!!! TTCATAGGATTTCTAAAATC+CGG - chr8_1:43300291-43300310 Msa1195380:intron 25.0%
! TCTTTGATATCAATACTAGA+TGG + chr8_1:43300512-43300531 None:intergenic 25.0%
!!! TAGTATTGATATCAAAGATG+CGG - chr8_1:43300514-43300533 Msa1195380:intron 25.0%
!! GACACTTTTATCAAACTTAT+TGG - chr8_1:43300585-43300604 Msa1195380:intron 25.0%
!! CTAGAAATAATTTGCACATT+GGG - chr8_1:43301994-43302013 Msa1195380:CDS 25.0%
! AACCCTGTTTTATAAGAATC+GGG - chr8_1:43296955-43296974 Msa1195380:CDS 30.0%
! AAATCGACTTTAGAAAAGGT+GGG + chr8_1:43296982-43297001 None:intergenic 30.0%
! AGAAATGTTGCATTTTGCTA+GGG + chr8_1:43297069-43297088 None:intergenic 30.0%
! AAGAAATGTTGCATTTTGCT+AGG + chr8_1:43297070-43297089 None:intergenic 30.0%
AAGCTTATATTATGCATACG+GGG + chr8_1:43297481-43297500 None:intergenic 30.0%
CGTATGCATAATATAAGCTT+TGG - chr8_1:43297481-43297500 Msa1195380:intron 30.0%
!! TCAAAAGTCAAACGGATTTT+AGG - chr8_1:43297547-43297566 Msa1195380:intron 30.0%
TAGCATAATGTCCAAAAGTA+CGG + chr8_1:43297788-43297807 None:intergenic 30.0%
CTTCATAAATTCGCTTAGAA+AGG + chr8_1:43297830-43297849 None:intergenic 30.0%
! TTACTAATATTCTTTTGCCG+AGG + chr8_1:43298047-43298066 None:intergenic 30.0%
TTCTGTAGTTACTTCTCAAT+TGG - chr8_1:43298271-43298290 Msa1195380:intron 30.0%
!! GTTTGATTTGATTACTTCTG+AGG - chr8_1:43298331-43298350 Msa1195380:intron 30.0%
!! CCAAGTTGGATATTTTTACT+AGG + chr8_1:43299007-43299026 None:intergenic 30.0%
CCTAGTAAAAATATCCAACT+TGG - chr8_1:43299004-43299023 Msa1195380:intron 30.0%
! TATTGGAATATCAGAGGTAT+AGG - chr8_1:43299213-43299232 Msa1195380:intron 30.0%
TCCGCAATAAAAATAAGCAT+AGG + chr8_1:43299288-43299307 None:intergenic 30.0%
ATCTGATCAATGTATAGCTT+TGG - chr8_1:43299452-43299471 Msa1195380:intron 30.0%
GTTGATCTTACTAATCTTCA+AGG - chr8_1:43299555-43299574 Msa1195380:intron 30.0%
!! AATCTTCAAGGTTGTTTTCA+AGG - chr8_1:43299567-43299586 Msa1195380:intron 30.0%
!! ATCTTCAAGGTTGTTTTCAA+GGG - chr8_1:43299568-43299587 Msa1195380:intron 30.0%
AAGTCACCAATAAATATCCA+CGG + chr8_1:43299594-43299613 None:intergenic 30.0%
GTAAAAAATGATCCCAAAGT+GGG + chr8_1:43299723-43299742 None:intergenic 30.0%
!!! TCATTTTTTACCTGGACTAA+TGG - chr8_1:43299732-43299751 Msa1195380:intron 30.0%
!! GATTGGATTAATTTTTGGAG+AGG - chr8_1:43299810-43299829 Msa1195380:intron 30.0%
AAATACAACCGAAACCAAAA+GGG + chr8_1:43299880-43299899 None:intergenic 30.0%
AAAATACAACCGAAACCAAA+AGG + chr8_1:43299881-43299900 None:intergenic 30.0%
!! CTTTAAGATTTGGAACAGAA+CGG - chr8_1:43300052-43300071 Msa1195380:intron 30.0%
TATGAAAATATGCAGTGTTG+CGG + chr8_1:43300277-43300296 None:intergenic 30.0%
!! TCATAGGATTTCTAAAATCC+GGG - chr8_1:43300292-43300311 Msa1195380:intron 30.0%
!!! ACTATTTCTTTTTTGCAGGA+TGG - chr8_1:43300326-43300345 Msa1195380:intron 30.0%
ATATGCATTTCTATAGCTGT+GGG + chr8_1:43300371-43300390 None:intergenic 30.0%
AATATGCATTTCTATAGCTG+TGG + chr8_1:43300372-43300391 None:intergenic 30.0%
CAATTGTGCACAAAATACAA+TGG - chr8_1:43300427-43300446 Msa1195380:intron 30.0%
TACAATTCCTTCAATTCTGA+CGG - chr8_1:43300457-43300476 Msa1195380:intron 30.0%
CAAACTTATTGGGACATTAT+TGG - chr8_1:43300596-43300615 Msa1195380:intron 30.0%
TCTGTTCAAGAATTCTTTCA+TGG - chr8_1:43300635-43300654 Msa1195380:intron 30.0%
CAAATTTAATAGGCAGAAAG+TGG - chr8_1:43300814-43300833 Msa1195380:intron 30.0%
!! TTGTTTTGTAGATGCTACTT+AGG - chr8_1:43300870-43300889 Msa1195380:intron 30.0%
CTACTTAAATCTAATGCTGA+AGG - chr8_1:43300900-43300919 Msa1195380:intron 30.0%
TGTATTATGTTGCACTCTAA+AGG - chr8_1:43300965-43300984 Msa1195380:intron 30.0%
! TATTCAAATTCAGCCTTTTC+AGG + chr8_1:43301138-43301157 None:intergenic 30.0%
!!! ATTTTCTCTGAAGTTTGCTT+AGG - chr8_1:43301160-43301179 Msa1195380:intron 30.0%
TCCTAAGGATCTATAGTTAA+GGG + chr8_1:43301208-43301227 None:intergenic 30.0%
ATAATGCTTTCAAAACTGAC+AGG + chr8_1:43301237-43301256 None:intergenic 30.0%
CATTGATATTTCAACTCGTA+TGG + chr8_1:43301274-43301293 None:intergenic 30.0%
CTACCTTCTTTGAATTATAC+AGG - chr8_1:43301322-43301341 Msa1195380:intron 30.0%
TTGCCTGTATAATTCAAAGA+AGG + chr8_1:43301328-43301347 None:intergenic 30.0%
TGCATTACAAGATATAAGTC+TGG - chr8_1:43301406-43301425 Msa1195380:intron 30.0%
! AATCTAGTTTCCTTCTGAAT+TGG - chr8_1:43301558-43301577 Msa1195380:intron 30.0%
TTTGCTTTATGTTTGTGAAC+TGG - chr8_1:43301770-43301789 Msa1195380:intron 30.0%
CTGAACATAATGTCAAACAA+AGG + chr8_1:43301797-43301816 None:intergenic 30.0%
TGACATTATGTTCAGAGTAT+AGG - chr8_1:43301802-43301821 Msa1195380:intron 30.0%
ACAATACAGCATAAATGTCT+TGG + chr8_1:43301856-43301875 None:intergenic 30.0%
!! TTTTGCTTTTGTACTTTCAC+TGG - chr8_1:43301878-43301897 Msa1195380:intron 30.0%
TGAAGGAATAAAAGCAACAT+AGG + chr8_1:43301953-43301972 None:intergenic 30.0%
AAATATTAGCTGGAGAATGA+AGG + chr8_1:43301970-43301989 None:intergenic 30.0%
! GCTAGAAATAATTTGCACAT+TGG - chr8_1:43301993-43302012 Msa1195380:CDS 30.0%
GCTCAAAATGGAACCAAAAA+TGG - chr8_1:43296831-43296850 Msa1195380:three_prime_UTR 35.0%
CAAAATGGAACCAAAAATGG+TGG - chr8_1:43296834-43296853 Msa1195380:three_prime_UTR 35.0%
! TTTGGACTTGGTTATGTTCT+TGG - chr8_1:43296910-43296929 Msa1195380:three_prime_UTR 35.0%
GACCCGATTCTTATAAAACA+GGG + chr8_1:43296960-43296979 None:intergenic 35.0%
! CAAATCGACTTTAGAAAAGG+TGG + chr8_1:43296983-43297002 None:intergenic 35.0%
! TGGCAAATCGACTTTAGAAA+AGG + chr8_1:43296986-43297005 None:intergenic 35.0%
!! TTTCTAAAGTCGATTTGCCA+AGG - chr8_1:43296986-43297005 Msa1195380:CDS 35.0%
!! TTCTAAAGTCGATTTGCCAA+GGG - chr8_1:43296987-43297006 Msa1195380:CDS 35.0%
TTTAGGAAAATATGGGCAGT+AGG - chr8_1:43297564-43297583 Msa1195380:intron 35.0%
TTTGAAAGAAATCGCATGTG+CGG - chr8_1:43297725-43297744 Msa1195380:intron 35.0%
AGAAATCCTTGTTGAAAGAG+AGG - chr8_1:43297848-43297867 Msa1195380:intron 35.0%
GAAATCCTTGTTGAAAGAGA+GGG - chr8_1:43297849-43297868 Msa1195380:intron 35.0%
TGACAGTGATGGCAAAATAA+AGG + chr8_1:43297912-43297931 None:intergenic 35.0%
TGATCGTGGGAAACAAATTA+TGG - chr8_1:43297995-43298014 Msa1195380:intron 35.0%
ACTACAGAAGATGAAACAAC+CGG + chr8_1:43298260-43298279 None:intergenic 35.0%
! ATTGTGTAATGGAATGCTGA+AGG + chr8_1:43298309-43298328 None:intergenic 35.0%
AACACAATCATATGAGTCTG+CGG - chr8_1:43298510-43298529 Msa1195380:intron 35.0%
TCATCATGCTCAACATTGAA+TGG + chr8_1:43298764-43298783 None:intergenic 35.0%
CAATCAGAAGCAACATCTTA+AGG - chr8_1:43299111-43299130 Msa1195380:intron 35.0%
GCAACATCTTAAGGTGAAAA+AGG - chr8_1:43299120-43299139 Msa1195380:intron 35.0%
! TTCTCTTTTGCCTAACCTAT+GGG - chr8_1:43299389-43299408 Msa1195380:intron 35.0%
GGTAAAAAATGATCCCAAAG+TGG + chr8_1:43299724-43299743 None:intergenic 35.0%
!!! CTTTGGGATCATTTTTTACC+TGG - chr8_1:43299724-43299743 Msa1195380:intron 35.0%
! ATCTGATCATAATCCCCTTT+TGG - chr8_1:43299863-43299882 Msa1195380:intron 35.0%
!!! TCATAATCCCCTTTTGGTTT+CGG - chr8_1:43299869-43299888 Msa1195380:intron 35.0%
AATACAACCGAAACCAAAAG+GGG + chr8_1:43299879-43299898 None:intergenic 35.0%
CGTTCTGTTCCAAATCTTAA+AGG + chr8_1:43300054-43300073 None:intergenic 35.0%
! GCAACACTGCATATTTTCAT+AGG - chr8_1:43300276-43300295 Msa1195380:intron 35.0%
! AAATAGTTTTTGTTGCTGCC+CGG + chr8_1:43300313-43300332 None:intergenic 35.0%
!! TTTTCAGGCTATATTCAGCA+TGG - chr8_1:43300400-43300419 Msa1195380:intron 35.0%
GTTCAAGAATTCTTTCATGG+TGG - chr8_1:43300638-43300657 Msa1195380:intron 35.0%
AACATAATACAGCATCAGAG+TGG + chr8_1:43300956-43300975 None:intergenic 35.0%
ATGAGCTATAAAGCCTGAAA+AGG - chr8_1:43301122-43301141 Msa1195380:intron 35.0%
CTCCTAAGGATCTATAGTTA+AGG + chr8_1:43301209-43301228 None:intergenic 35.0%
! TGGTCGAAAAACTCTCTTTT+CGG - chr8_1:43301448-43301467 Msa1195380:intron 35.0%
TAGACCTGTTGAATAATCTG+GGG + chr8_1:43301479-43301498 None:intergenic 35.0%
GTAGACCTGTTGAATAATCT+GGG + chr8_1:43301480-43301499 None:intergenic 35.0%
TGTAGACCTGTTGAATAATC+TGG + chr8_1:43301481-43301500 None:intergenic 35.0%
AACCCTATCATAAGAGAATG+AGG + chr8_1:43301642-43301661 None:intergenic 35.0%
TTCTAGCGCAAAATATTAGC+TGG + chr8_1:43301980-43301999 None:intergenic 35.0%
! ACGGTCTCACTTTGTTTGAT+CGG - chr8_1:43296798-43296817 Msa1195380:three_prime_UTR 40.0%
GGTGAAAAAGACGCTCAAAA+TGG - chr8_1:43296819-43296838 Msa1195380:three_prime_UTR 40.0%
GGACCCGATTCTTATAAAAC+AGG + chr8_1:43296961-43296980 None:intergenic 40.0%
GAAAATATGGGCAGTAGGTA+CGG - chr8_1:43297569-43297588 Msa1195380:intron 40.0%
!! CCAAAAGTACGGTTTCTAGT+TGG + chr8_1:43297777-43297796 None:intergenic 40.0%
! CCAACTAGAAACCGTACTTT+TGG - chr8_1:43297774-43297793 Msa1195380:CDS 40.0%
CAAAACCCTCTCTTTCAACA+AGG + chr8_1:43297857-43297876 None:intergenic 40.0%
! AAGAGAGGGTTTTGCTTTCA+AGG - chr8_1:43297863-43297882 Msa1195380:intron 40.0%
GGGAAACAAATTATGGTTGC+CGG - chr8_1:43298002-43298021 Msa1195380:intron 40.0%
GGAAACAAATTATGGTTGCC+GGG - chr8_1:43298003-43298022 Msa1195380:intron 40.0%
GAAACAAATTATGGTTGCCG+GGG - chr8_1:43298004-43298023 Msa1195380:intron 40.0%
! CTAATATTCTTTTGCCGAGG+AGG + chr8_1:43298044-43298063 None:intergenic 40.0%
GGTGTAACTGTAGAAGAATC+TGG + chr8_1:43298155-43298174 None:intergenic 40.0%
TACAGTTACACCCACTTCAT+CGG - chr8_1:43298163-43298182 Msa1195380:intron 40.0%
ATGATAGCCAAAGAAGGAGT+AGG + chr8_1:43298221-43298240 None:intergenic 40.0%
AGTCAACTTCGCTACTTCTA+CGG + chr8_1:43298420-43298439 None:intergenic 40.0%
ACACAATCATATGAGTCTGC+GGG - chr8_1:43298511-43298530 Msa1195380:intron 40.0%
TTATCTGAACCACTTCAGGA+TGG - chr8_1:43298665-43298684 Msa1195380:intron 40.0%
TGATGACATGCATGAGTTGT+TGG - chr8_1:43298778-43298797 Msa1195380:intron 40.0%
ATAGGATTATCCTGGTGCTT+TGG + chr8_1:43298812-43298831 None:intergenic 40.0%
GTTCATGACATTGAGGATGT+TGG - chr8_1:43298863-43298882 Msa1195380:intron 40.0%
!! GCAAGCATTGAGAAAAGATG+TGG - chr8_1:43298895-43298914 Msa1195380:intron 40.0%
TCATTTAGCAGACGAATGAG+AGG + chr8_1:43299185-43299204 None:intergenic 40.0%
ATTGTCGGCCAATACCAATT+AGG + chr8_1:43299336-43299355 None:intergenic 40.0%
!! AATTGGTATTGGCCGACAAT+TGG - chr8_1:43299336-43299355 Msa1195380:intron 40.0%
! GTTCTCTTTTGCCTAACCTA+TGG - chr8_1:43299388-43299407 Msa1195380:intron 40.0%
TATGCTAGCACCTACTACAT+TGG - chr8_1:43299516-43299535 Msa1195380:intron 40.0%
AAATCCTCACACGACAAAGA+TGG + chr8_1:43299663-43299682 None:intergenic 40.0%
!!! CGTGTGAGGATTTTTTGCAT+TGG - chr8_1:43299670-43299689 Msa1195380:intron 40.0%
ACCTGGACTAATGGTAGATT+TGG - chr8_1:43299741-43299760 Msa1195380:intron 40.0%
ACCAAATCTACCATTAGTCC+AGG + chr8_1:43299745-43299764 None:intergenic 40.0%
AGGTATTTCTTGTTCAGCCT+TGG - chr8_1:43299830-43299849 Msa1195380:intron 40.0%
GGGGATTATGATCAGATTGA+TGG + chr8_1:43299860-43299879 None:intergenic 40.0%
! GGTTTCGGTTGTATTTTCCT+CGG - chr8_1:43299884-43299903 Msa1195380:intron 40.0%
! TGGTTGTCGTGACTTAGTTT+TGG - chr8_1:43299956-43299975 Msa1195380:intron 40.0%
!!! GTGACTTAGTTTTGGAAACC+TGG - chr8_1:43299964-43299983 Msa1195380:intron 40.0%
ATTGAAACCGAAGCATACCT+TGG + chr8_1:43300007-43300026 None:intergenic 40.0%
! ATTTGGAACAGAACGGTGTT+TGG - chr8_1:43300059-43300078 Msa1195380:intron 40.0%
! TTTGGAACAGAACGGTGTTT+GGG - chr8_1:43300060-43300079 Msa1195380:intron 40.0%
!! CAGACAAGTTAAGCTTGCTA+TGG - chr8_1:43300091-43300110 Msa1195380:intron 40.0%
!! CAGCAGTTAATTGATTCGGA+TGG - chr8_1:43300131-43300150 Msa1195380:intron 40.0%
TTAACATGAGTTGTGCCTCA+AGG + chr8_1:43300184-43300203 None:intergenic 40.0%
TCTACATCCGTCAGAATTGA+AGG + chr8_1:43300467-43300486 None:intergenic 40.0%
TAGACAACCAAATGCTTCTG+CGG - chr8_1:43300483-43300502 Msa1195380:intron 40.0%
GTTTGCCCTTAATGGTGATT+CGG - chr8_1:43300538-43300557 Msa1195380:intron 40.0%
AATCTGTACTCAAGTCCTTG+TGG - chr8_1:43300928-43300947 Msa1195380:intron 40.0%
! AAATGATTTGCACTGCACAC+AGG + chr8_1:43301045-43301064 None:intergenic 40.0%
GATCTATAGTTAAGGGCTTG+AGG + chr8_1:43301201-43301220 None:intergenic 40.0%
GCCCTTAACTATAGATCCTT+AGG - chr8_1:43301204-43301223 Msa1195380:intron 40.0%
TGGTTTGAGAAAGTGAACAC+TGG + chr8_1:43301353-43301372 None:intergenic 40.0%
AGTGTTCACTTTCTCAAACC+AGG - chr8_1:43301352-43301371 Msa1195380:intron 40.0%
AGACCTGTTGAATAATCTGG+GGG + chr8_1:43301478-43301497 None:intergenic 40.0%
CTAGTTTCCTTCTGAATTGG+CGG - chr8_1:43301561-43301580 Msa1195380:intron 40.0%
TCGCCTCATTCTCTTATGAT+AGG - chr8_1:43301636-43301655 Msa1195380:intron 40.0%
CGCCTCATTCTCTTATGATA+GGG - chr8_1:43301637-43301656 Msa1195380:intron 40.0%
TGGTATTTGTCTCTCAAGCA+TGG - chr8_1:43301678-43301697 Msa1195380:intron 40.0%
GGTATTTGTCTCTCAAGCAT+GGG - chr8_1:43301679-43301698 Msa1195380:intron 40.0%
TCAGCAAAAAGCTCCTCCTT+TGG - chr8_1:43296727-43296746 Msa1195380:three_prime_UTR 45.0%
TCCTCCTTTGGTGAAACTGA+AGG - chr8_1:43296739-43296758 Msa1195380:three_prime_UTR 45.0%
CCTCCTTTGGTGAAACTGAA+GGG - chr8_1:43296740-43296759 Msa1195380:three_prime_UTR 45.0%
GAACCAAAAATGGTGGTCAG+TGG - chr8_1:43296841-43296860 Msa1195380:three_prime_UTR 45.0%
! ACACCACTGACCACCATTTT+TGG + chr8_1:43296847-43296866 None:intergenic 45.0%
AAAAATGGTGGTCAGTGGTG+TGG - chr8_1:43296846-43296865 Msa1195380:three_prime_UTR 45.0%
TGTGGTTGTGTGAAGGAAGA+AGG - chr8_1:43296864-43296883 Msa1195380:three_prime_UTR 45.0%
GTTGTGTGAAGGAAGAAGGA+AGG - chr8_1:43296868-43296887 Msa1195380:three_prime_UTR 45.0%
TGTGAAGGAAGAAGGAAGGA+TGG - chr8_1:43296872-43296891 Msa1195380:three_prime_UTR 45.0%
ATTTACCAGGAGCAATGCCA+GGG + chr8_1:43297016-43297035 None:intergenic 45.0%
AATTTACCAGGAGCAATGCC+AGG + chr8_1:43297017-43297036 None:intergenic 45.0%
TTGCTCCTGGTAAATTTGCC+AGG - chr8_1:43297021-43297040 Msa1195380:CDS 45.0%
GAACTCCTGGCAAATTTACC+AGG + chr8_1:43297029-43297048 None:intergenic 45.0%
! TTTTGCTAGGGAACTATGCC+AGG + chr8_1:43297057-43297076 None:intergenic 45.0%
AGGTACGGTTAATCTCAAGC+CGG - chr8_1:43297584-43297603 Msa1195380:intron 45.0%
AGCAGACACATGTCACGATT+TGG - chr8_1:43297658-43297677 Msa1195380:intron 45.0%
! CACGATTTGGATACGCTTGA+TGG - chr8_1:43297671-43297690 Msa1195380:intron 45.0%
! TGGAGTTACCGCAAGAGTAT+TGG - chr8_1:43297691-43297710 Msa1195380:intron 45.0%
!! AGTTACCGCAAGAGTATTGG+AGG - chr8_1:43297694-43297713 Msa1195380:intron 45.0%
!! GTTACCGCAAGAGTATTGGA+GGG - chr8_1:43297695-43297714 Msa1195380:intron 45.0%
AAAGAAATCGCATGTGCGGT+TGG - chr8_1:43297729-43297748 Msa1195380:intron 45.0%
AAGAAATCGCATGTGCGGTT+GGG - chr8_1:43297730-43297749 Msa1195380:intron 45.0%
GGGACTCCAATTGATATCGA+CGG - chr8_1:43297750-43297769 Msa1195380:intron 45.0%
GTTGGTCCGTCGATATCAAT+TGG + chr8_1:43297759-43297778 None:intergenic 45.0%
! AGAGGGTTTTGCTTTCAAGG+TGG - chr8_1:43297866-43297885 Msa1195380:intron 45.0%
TGCCATCACTGTCATTCCAT+TGG - chr8_1:43297918-43297937 Msa1195380:intron 45.0%
GTCCAATGGAATGACAGTGA+TGG + chr8_1:43297923-43297942 None:intergenic 45.0%
CAATGAGACACTGTGTCCAA+TGG + chr8_1:43297937-43297956 None:intergenic 45.0%
ACAGTGTCTCATTGTGTCGT+TGG - chr8_1:43297943-43297962 Msa1195380:intron 45.0%
! ATATTCTTTTGCCGAGGAGG+AGG + chr8_1:43298041-43298060 None:intergenic 45.0%
! AGAATCTGGAACTCTCTGAG+TGG + chr8_1:43298141-43298160 None:intergenic 45.0%
TTCATCGGTCTCAATGGCAT+TGG - chr8_1:43298178-43298197 Msa1195380:intron 45.0%
TTCGCTTCCTACTCCTTCTT+TGG - chr8_1:43298211-43298230 Msa1195380:intron 45.0%
GAAGCGATGATAGCCAAAGA+AGG + chr8_1:43298227-43298246 None:intergenic 45.0%
GTCAACTTCGCTACTTCTAC+GGG + chr8_1:43298419-43298438 None:intergenic 45.0%
! GAAGTTGACTCAGAAACCGA+GGG - chr8_1:43298430-43298449 Msa1195380:intron 45.0%
TCTGTATCCCCAGTTACCAA+GGG + chr8_1:43298470-43298489 None:intergenic 45.0%
GATACAGAGTTGCTTCTGGA+GGG - chr8_1:43298482-43298501 Msa1195380:intron 45.0%
CGAGTTATCTGAACCACTTC+AGG - chr8_1:43298661-43298680 Msa1195380:intron 45.0%
TGCTCAACATTGAATGGCCT+TGG + chr8_1:43298758-43298777 None:intergenic 45.0%
!! GGATATTTTGCCAAAGCACC+AGG - chr8_1:43298799-43298818 Msa1195380:intron 45.0%
GCACCAGGATAATCCTATCT+CGG - chr8_1:43298814-43298833 Msa1195380:intron 45.0%
GATCCGAGATAGGATTATCC+TGG + chr8_1:43298820-43298839 None:intergenic 45.0%
!! ATCCCCCAATAGGTGTTGAT+GGG - chr8_1:43298837-43298856 Msa1195380:intron 45.0%
AGACCCATCAACACCTATTG+GGG + chr8_1:43298843-43298862 None:intergenic 45.0%
CAGACCCATCAACACCTATT+GGG + chr8_1:43298844-43298863 None:intergenic 45.0%
ACAGACCCATCAACACCTAT+TGG + chr8_1:43298845-43298864 None:intergenic 45.0%
TGGGTCTGTTCATGACATTG+AGG - chr8_1:43298856-43298875 Msa1195380:intron 45.0%
AGAATGAGATTGTCCCTCAG+AGG - chr8_1:43298969-43298988 Msa1195380:intron 45.0%
!! TCCAACTTGGTGTCGAATTG+TGG - chr8_1:43299017-43299036 Msa1195380:intron 45.0%
!! CCAACTTGGTGTCGAATTGT+GGG - chr8_1:43299018-43299037 Msa1195380:intron 45.0%
ATTGCGAGTAAGGACAGGTA+AGG + chr8_1:43299095-43299114 None:intergenic 45.0%
TTCTGATTGCGAGTAAGGAC+AGG + chr8_1:43299100-43299119 None:intergenic 45.0%
GTTGCTTCTGATTGCGAGTA+AGG + chr8_1:43299105-43299124 None:intergenic 45.0%
AACAGCGGCTATGTAAACAG+TGG + chr8_1:43299496-43299515 None:intergenic 45.0%
GTAGGTGCTAGCATAAACAG+CGG + chr8_1:43299511-43299530 None:intergenic 45.0%
TTGTCGTCGACCAATGTAGT+AGG + chr8_1:43299529-43299548 None:intergenic 45.0%
ACATTGGTCGACGACAACTT+TGG - chr8_1:43299532-43299551 Msa1195380:intron 45.0%
CATTGGTCGACGACAACTTT+GGG - chr8_1:43299533-43299552 Msa1195380:intron 45.0%
CAAGGGCCGTGGATATTTAT+TGG - chr8_1:43299585-43299604 Msa1195380:intron 45.0%
TGGTGACTTTAATGCCGTCT+TGG - chr8_1:43299605-43299624 Msa1195380:intron 45.0%
GGTGACTTTAATGCCGTCTT+GGG - chr8_1:43299606-43299625 Msa1195380:intron 45.0%
TTTGAACCACTTGCCCACTT+TGG - chr8_1:43299707-43299726 Msa1195380:intron 45.0%
TTGAACCACTTGCCCACTTT+GGG - chr8_1:43299708-43299727 Msa1195380:intron 45.0%
ATGTCGCTCTTCGTCTTGAT+AGG - chr8_1:43299772-43299791 Msa1195380:intron 45.0%
TGTCGCTCTTCGTCTTGATA+GGG - chr8_1:43299773-43299792 Msa1195380:intron 45.0%
GGGCAGTTTGCAATGAAGAT+TGG - chr8_1:43299793-43299812 Msa1195380:intron 45.0%
AAGGTTTGGACCTCTCATAG+TGG - chr8_1:43299936-43299955 Msa1195380:intron 45.0%
!!! GTTTTGGAAACCTGGAACCA+AGG - chr8_1:43299972-43299991 Msa1195380:intron 45.0%
TTGGAACAGAACGGTGTTTG+GGG - chr8_1:43300061-43300080 Msa1195380:intron 45.0%
GCTATACCTACAAGACCTTG+AGG - chr8_1:43300166-43300185 Msa1195380:intron 45.0%
AGAGATCAGCGATTTGTCAG+TGG - chr8_1:43300248-43300267 Msa1195380:intron 45.0%
!! ATGGAAACCGCAGAAGCATT+TGG + chr8_1:43300493-43300512 None:intergenic 45.0%
!! GGACATTATTGGCTCTGATG+TGG - chr8_1:43300607-43300626 Msa1195380:intron 45.0%
! TTGTAGATGCTACTTAGGCG+TGG - chr8_1:43300875-43300894 Msa1195380:intron 45.0%
ACTGACAGGTAAAGCTCCTA+AGG + chr8_1:43301223-43301242 None:intergenic 45.0%
TTCACTTTCTCAAACCAGGC+AGG - chr8_1:43301356-43301375 Msa1195380:intron 45.0%
TCACTTTCTCAAACCAGGCA+GGG - chr8_1:43301357-43301376 Msa1195380:intron 45.0%
GTTCCCCCAGATTATTCAAC+AGG - chr8_1:43301472-43301491 Msa1195380:intron 45.0%
AAGCATACCGCCAATTCAGA+AGG + chr8_1:43301571-43301590 None:intergenic 45.0%
! TAGGGTTTTGCATGTCTGCA+AGG - chr8_1:43301655-43301674 Msa1195380:intron 45.0%
!! CTGGATTTGCTCTGAAGACT+TGG - chr8_1:43301897-43301916 Msa1195380:intron 45.0%
CCCTTCAGTTTCACCAAAGG+AGG + chr8_1:43296743-43296762 None:intergenic 50.0%
GGTCCCTTCAGTTTCACCAA+AGG + chr8_1:43296746-43296765 None:intergenic 50.0%
CAATAGAAAGCCCTCGTCGA+GGG - chr8_1:43296765-43296784 Msa1195380:three_prime_UTR 50.0%
AATAGAAAGCCCTCGTCGAG+GGG - chr8_1:43296766-43296785 Msa1195380:three_prime_UTR 50.0%
TTTCTTCATCCCCTCGACGA+GGG + chr8_1:43296778-43296797 None:intergenic 50.0%
! TTTTCTTCATCCCCTCGACG+AGG + chr8_1:43296779-43296798 None:intergenic 50.0%
CGTCGAGGGGATGAAGAAAA+CGG - chr8_1:43296779-43296798 Msa1195380:three_prime_UTR 50.0%
TCAGTGGTGTGGTTGTGTGA+AGG - chr8_1:43296857-43296876 Msa1195380:three_prime_UTR 50.0%
GGTACGGTTAATCTCAAGCC+GGG - chr8_1:43297585-43297604 Msa1195380:intron 50.0%
TGTGAGAATCGAAGCAGACC+CGG + chr8_1:43297606-43297625 None:intergenic 50.0%
GTCTGCTTCGATTCTCACAG+TGG - chr8_1:43297607-43297626 Msa1195380:intron 50.0%
CTCTCCCTCCAATACTCTTG+CGG + chr8_1:43297702-43297721 None:intergenic 50.0%
! GGGTTTTGCTTTCAAGGTGG+AGG - chr8_1:43297869-43297888 Msa1195380:intron 50.0%
CCACGATCATTCTTGTCCTG+CGG + chr8_1:43297984-43298003 None:intergenic 50.0%
CGCAGGACAAGAATGATCGT+GGG - chr8_1:43297982-43298001 Msa1195380:intron 50.0%
TTTGCCGAGGAGGAGGTTTA+GGG + chr8_1:43298034-43298053 None:intergenic 50.0%
! TTTTGCCGAGGAGGAGGTTT+AGG + chr8_1:43298035-43298054 None:intergenic 50.0%
ATCGGCCAATGGCACTAGTT+GGG - chr8_1:43298085-43298104 Msa1195380:intron 50.0%
AGGAACCCAACTAGTGCCAT+TGG + chr8_1:43298093-43298112 None:intergenic 50.0%
CACTAGTTGGGTTCCTATCC+CGG - chr8_1:43298097-43298116 Msa1195380:intron 50.0%
TAGTAACAGTCGACACAGCC+GGG + chr8_1:43298118-43298137 None:intergenic 50.0%
GTAGTAACAGTCGACACAGC+CGG + chr8_1:43298119-43298138 None:intergenic 50.0%
ACCCACTTCATCGGTCTCAA+TGG - chr8_1:43298172-43298191 Msa1195380:intron 50.0%
GCCATTGAGACCGATGAAGT+GGG + chr8_1:43298176-43298195 None:intergenic 50.0%
TGCCATTGAGACCGATGAAG+TGG + chr8_1:43298177-43298196 None:intergenic 50.0%
!! CTCAATGGCATTGGCGTTAC+CGG - chr8_1:43298187-43298206 Msa1195380:intron 50.0%
GAAGGAGTAGGAAGCGAAAC+CGG + chr8_1:43298209-43298228 None:intergenic 50.0%
GGCTATCATCGCTTCACAGT+CGG - chr8_1:43298232-43298251 Msa1195380:intron 50.0%
! CGAAGTTGACTCAGAAACCG+AGG - chr8_1:43298429-43298448 Msa1195380:intron 50.0%
! TGGAGAACCCCTTGGTAACT+GGG - chr8_1:43298459-43298478 Msa1195380:intron 50.0%
CTGTATCCCCAGTTACCAAG+GGG + chr8_1:43298469-43298488 None:intergenic 50.0%
CTCTGTATCCCCAGTTACCA+AGG + chr8_1:43298471-43298490 None:intergenic 50.0%
TGGGGATACAGAGTTGCTTC+TGG - chr8_1:43298478-43298497 Msa1195380:intron 50.0%
GGATACAGAGTTGCTTCTGG+AGG - chr8_1:43298481-43298500 Msa1195380:intron 50.0%
GAACACACTCATCCCCTCTT+GGG - chr8_1:43298570-43298589 Msa1195380:intron 50.0%
AGTGAGGACGTACGACCTAA+CGG - chr8_1:43298593-43298612 Msa1195380:intron 50.0%
GCAGATAACACAGACGTCGT+TGG - chr8_1:43298622-43298641 Msa1195380:intron 50.0%
AGCAAGATCATGTGAGCCCA+CGG - chr8_1:43298693-43298712 Msa1195380:intron 50.0%
ACAATCTCACGAGCACCCTT+GGG + chr8_1:43298734-43298753 None:intergenic 50.0%
AACAATCTCACGAGCACCCT+TGG + chr8_1:43298735-43298754 None:intergenic 50.0%
GTGCTCGTGAGATTGTTCCA+AGG - chr8_1:43298738-43298757 Msa1195380:intron 50.0%
!! GATCCCCCAATAGGTGTTGA+TGG - chr8_1:43298836-43298855 Msa1195380:intron 50.0%
GACCCATCAACACCTATTGG+GGG + chr8_1:43298842-43298861 None:intergenic 50.0%
GAGAAAAGATGTGGCTCTCG+AGG - chr8_1:43298904-43298923 Msa1195380:intron 50.0%
! GAGGAAGCTAGTCTCGTTGA+TGG - chr8_1:43298923-43298942 Msa1195380:intron 50.0%
! GAAGCTAGTCTCGTTGATGG+AGG - chr8_1:43298926-43298945 Msa1195380:intron 50.0%
! TAGTCTCGTTGATGGAGGCA+TGG - chr8_1:43298931-43298950 Msa1195380:intron 50.0%
! TGGAGGCATGGCAATGGATA+CGG - chr8_1:43298943-43298962 Msa1195380:intron 50.0%
CCCACAATTCGACACCAAGT+TGG + chr8_1:43299021-43299040 None:intergenic 50.0%
!! TTGGTGTCGAATTGTGGGAG+AGG - chr8_1:43299023-43299042 Msa1195380:intron 50.0%
! TGGTGTCGAATTGTGGGAGA+GGG - chr8_1:43299024-43299043 Msa1195380:intron 50.0%
CAGACCGTGCATCATACTCT+CGG + chr8_1:43299051-43299070 None:intergenic 50.0%
TGCCTAACCTATGGGCTCTT+TGG - chr8_1:43299397-43299416 Msa1195380:intron 50.0%
GCCTAACCTATGGGCTCTTT+GGG - chr8_1:43299398-43299417 Msa1195380:intron 50.0%
CCTAACCTATGGGCTCTTTG+GGG - chr8_1:43299399-43299418 Msa1195380:intron 50.0%
CTAACCTATGGGCTCTTTGG+GGG - chr8_1:43299400-43299419 Msa1195380:intron 50.0%
!! AAGGTTGTTTTCAAGGGCCG+TGG - chr8_1:43299574-43299593 Msa1195380:intron 50.0%
! CTTTTCATGTGCGCCCAAGA+CGG + chr8_1:43299622-43299641 None:intergenic 50.0%
TCTTGGGCGCACATGAAAAG+AGG - chr8_1:43299622-43299641 Msa1195380:intron 50.0%
CTTGGGCGCACATGAAAAGA+GGG - chr8_1:43299623-43299642 Msa1195380:intron 50.0%
TTGGGCGCACATGAAAAGAG+GGG - chr8_1:43299624-43299643 Msa1195380:intron 50.0%
TCACACGACAAAGATGGAGG+AGG + chr8_1:43299657-43299676 None:intergenic 50.0%
TCCTCCATCTTTGTCGTGTG+AGG - chr8_1:43299656-43299675 Msa1195380:intron 50.0%
TCCTCACACGACAAAGATGG+AGG + chr8_1:43299660-43299679 None:intergenic 50.0%
ATGATCCCAAAGTGGGCAAG+TGG + chr8_1:43299716-43299735 None:intergenic 50.0%
!! ATCAGATTGATGGCGCACCA+AGG + chr8_1:43299850-43299869 None:intergenic 50.0%
GTCACGACAACCACTATGAG+AGG + chr8_1:43299949-43299968 None:intergenic 50.0%
TTCGTGGCCAAGGTATGCTT+CGG - chr8_1:43299997-43300016 Msa1195380:intron 50.0%
! GTTGTGCCTCAAGGTCTTGT+AGG + chr8_1:43300175-43300194 None:intergenic 50.0%
GATGCGGTGTTTGCCCTTAA+TGG - chr8_1:43300530-43300549 Msa1195380:intron 50.0%
AAGTGTCCACCAAACCCATC+CGG + chr8_1:43300572-43300591 None:intergenic 50.0%
! GGTTTTGCATGTCTGCAAGG+TGG - chr8_1:43301658-43301677 Msa1195380:intron 50.0%
ACAGCTCTCTCGTATGAGAC+AGG + chr8_1:43301709-43301728 None:intergenic 50.0%
CATACGAGAGAGCTGTTGCT+TGG - chr8_1:43301713-43301732 Msa1195380:intron 50.0%
CCTCGACGAGGGCTTTCTAT+TGG + chr8_1:43296767-43296786 None:intergenic 55.0%
CCAATAGAAAGCCCTCGTCG+AGG - chr8_1:43296764-43296783 Msa1195380:three_prime_UTR 55.0%
AGAAGGAAGGATGGTACGCG+TGG - chr8_1:43296881-43296900 Msa1195380:three_prime_UTR 55.0%
TGGTACGCGTGGTGTGTGTT+TGG - chr8_1:43296892-43296911 Msa1195380:three_prime_UTR 55.0%
GCGTGGTGTGTGTTTGGACT+TGG - chr8_1:43296898-43296917 Msa1195380:three_prime_UTR 55.0%
TTGCCAGGAGTTCTTGCTCC+TGG - chr8_1:43297036-43297055 Msa1195380:CDS 55.0%
ATGCCAGGAGCAAGAACTCC+TGG + chr8_1:43297042-43297061 None:intergenic 55.0%
! AGGTGGAGGTGCACTATGAG+CGG - chr8_1:43297883-43297902 Msa1195380:intron 55.0%
TTCTTGTCCTGCGGAGGTTG+CGG + chr8_1:43297975-43297994 None:intergenic 55.0%
CGATCATTCTTGTCCTGCGG+AGG + chr8_1:43297981-43298000 None:intergenic 55.0%
CCGCAGGACAAGAATGATCG+TGG - chr8_1:43297981-43298000 Msa1195380:intron 55.0%
TTGCCGAGGAGGAGGTTTAG+GGG + chr8_1:43298033-43298052 None:intergenic 55.0%
AGAAGTGGGTGCCTCCACAT+CGG - chr8_1:43298067-43298086 Msa1195380:intron 55.0%
! ACTAGTGCCATTGGCCGATG+TGG + chr8_1:43298084-43298103 None:intergenic 55.0%
CATCGGCCAATGGCACTAGT+TGG - chr8_1:43298084-43298103 Msa1195380:intron 55.0%
!! TCAAGCACTGGCATACTGCG+AGG + chr8_1:43298362-43298381 None:intergenic 55.0%
GGGGAAACAAGCTCAAGCAC+TGG + chr8_1:43298374-43298393 None:intergenic 55.0%
CACGTCAACGAGCACATCAG+GGG + chr8_1:43298393-43298412 None:intergenic 55.0%
GCACGTCAACGAGCACATCA+GGG + chr8_1:43298394-43298413 None:intergenic 55.0%
TGCACGTCAACGAGCACATC+AGG + chr8_1:43298395-43298414 None:intergenic 55.0%
! GTTGACTCAGAAACCGAGGG+AGG - chr8_1:43298433-43298452 Msa1195380:intron 55.0%
! CTGGAGAACCCCTTGGTAAC+TGG - chr8_1:43298458-43298477 Msa1195380:intron 55.0%
! GGAGAACCCCTTGGTAACTG+GGG - chr8_1:43298460-43298479 Msa1195380:intron 55.0%
! AGAGTTGCTTCTGGAGGGTG+TGG - chr8_1:43298487-43298506 Msa1195380:intron 55.0%
TCATATGAGTCTGCGGGAGC+TGG - chr8_1:43298517-43298536 Msa1195380:intron 55.0%
CATATGAGTCTGCGGGAGCT+GGG - chr8_1:43298518-43298537 Msa1195380:intron 55.0%
ATATGAGTCTGCGGGAGCTG+GGG - chr8_1:43298519-43298538 Msa1195380:intron 55.0%
CCACGCACATTAGACTCCGT+GGG + chr8_1:43298551-43298570 None:intergenic 55.0%
TCCACGCACATTAGACTCCG+TGG + chr8_1:43298552-43298571 None:intergenic 55.0%
GGAACACACTCATCCCCTCT+TGG - chr8_1:43298569-43298588 Msa1195380:intron 55.0%
TACGTCCTCACTCCCAAGAG+GGG + chr8_1:43298585-43298604 None:intergenic 55.0%
GTACGTCCTCACTCCCAAGA+GGG + chr8_1:43298586-43298605 None:intergenic 55.0%
GTGAGGACGTACGACCTAAC+GGG - chr8_1:43298594-43298613 Msa1195380:intron 55.0%
TGAGGACGTACGACCTAACG+GGG - chr8_1:43298595-43298614 Msa1195380:intron 55.0%
GTTATCTGCTCCACCCCGTT+AGG + chr8_1:43298611-43298630 None:intergenic 55.0%
AGATAACTCGTCTGCCGCTG+GGG + chr8_1:43298651-43298670 None:intergenic 55.0%
CAGATAACTCGTCTGCCGCT+GGG + chr8_1:43298652-43298671 None:intergenic 55.0%
TCAGATAACTCGTCTGCCGC+TGG + chr8_1:43298653-43298672 None:intergenic 55.0%
TGAACCACTTCAGGATGGCG+TGG - chr8_1:43298670-43298689 Msa1195380:intron 55.0%
GCAAGATCATGTGAGCCCAC+GGG - chr8_1:43298694-43298713 Msa1195380:intron 55.0%
CCTATTGGGGGATCCGAGAT+AGG + chr8_1:43298830-43298849 None:intergenic 55.0%
CCTATCTCGGATCCCCCAAT+AGG - chr8_1:43298827-43298846 Msa1195380:intron 55.0%
! CGTTGATGGAGGCATGGCAA+TGG - chr8_1:43298937-43298956 Msa1195380:intron 55.0%
TGAGATTGTCCCTCAGAGGC+AGG - chr8_1:43298973-43298992 Msa1195380:intron 55.0%
GATGTACCTCCTGCCTCTGA+GGG + chr8_1:43298985-43299004 None:intergenic 55.0%
! GGGTCCGAGAGTATGATGCA+CGG - chr8_1:43299044-43299063 Msa1195380:intron 55.0%
CCCCAAAGAGCCCATAGGTT+AGG + chr8_1:43299402-43299421 None:intergenic 55.0%
CATTCCCCCAAAGAGCCCAT+AGG + chr8_1:43299407-43299426 None:intergenic 55.0%
AGGAGTAGCATGCTTCACCG+AGG + chr8_1:43299904-43299923 None:intergenic 55.0%
! ACCTGGAACCAAGGTGTTCG+TGG - chr8_1:43299981-43300000 Msa1195380:intron 55.0%
! AACCAAGGTGTTCGTGGCCA+AGG - chr8_1:43299987-43300006 Msa1195380:intron 55.0%
TACCTTGGCCACGAACACCT+TGG + chr8_1:43299992-43300011 None:intergenic 55.0%
CGGGGCCGAATCACCATTAA+GGG + chr8_1:43300546-43300565 None:intergenic 55.0%
! CCTTAATGGTGATTCGGCCC+CGG - chr8_1:43300544-43300563 Msa1195380:intron 55.0%
! CTTAATGGTGATTCGGCCCC+GGG - chr8_1:43300545-43300564 Msa1195380:intron 55.0%
!! AGCATCAGAGTGGTGCCACA+AGG + chr8_1:43300946-43300965 None:intergenic 55.0%
! CGAGAGAGCTGTTGCTTGGA+AGG - chr8_1:43301717-43301736 Msa1195380:intron 55.0%
!! CGATTTGCCAAGGGCATCCC+TGG - chr8_1:43296996-43297015 Msa1195380:CDS 60.0%
AGCAATGCCAGGGATGCCCT+TGG + chr8_1:43297006-43297025 None:intergenic 60.0%
GATTCATCCGCAACCTCCGC+AGG - chr8_1:43297965-43297984 Msa1195380:intron 60.0%
CTGCCCCTAAACCTCCTCCT+CGG - chr8_1:43298027-43298046 Msa1195380:intron 60.0%
! AGTGCCATTGGCCGATGTGG+AGG + chr8_1:43298081-43298100 None:intergenic 60.0%
ACAGTCGACACAGCCGGGAT+AGG + chr8_1:43298113-43298132 None:intergenic 60.0%
CATCGCTTCACAGTCGGAGC+CGG - chr8_1:43298238-43298257 Msa1195380:intron 60.0%
! TCAGAAACCGAGGGAGGTGC+TGG - chr8_1:43298439-43298458 Msa1195380:intron 60.0%
CCCACGGAGTCTAATGTGCG+TGG - chr8_1:43298548-43298567 Msa1195380:intron 60.0%
CTCATCCCCTCTTGGGAGTG+AGG - chr8_1:43298577-43298596 Msa1195380:intron 60.0%
CGTACGTCCTCACTCCCAAG+AGG + chr8_1:43298587-43298606 None:intergenic 60.0%
TGCTCCACGCCATCCTGAAG+TGG + chr8_1:43298677-43298696 None:intergenic 60.0%
GAGCTGGAGGAGAGTCCCAA+GGG - chr8_1:43298716-43298735 Msa1195380:intron 60.0%
GATTGTCCCTCAGAGGCAGG+AGG - chr8_1:43298976-43298995 Msa1195380:intron 60.0%
GGATGTACCTCCTGCCTCTG+AGG + chr8_1:43298986-43299005 None:intergenic 60.0%
GACAGGTAAGGAACCCGCAG+CGG + chr8_1:43299083-43299102 None:intergenic 60.0%
AGCCTCCCAAACCTCGTGCA+AGG - chr8_1:43299155-43299174 Msa1195380:intron 60.0%
GCCTCCCAAACCTCGTGCAA+GGG - chr8_1:43299156-43299175 Msa1195380:intron 60.0%
CCTCCCAAACCTCGTGCAAG+GGG - chr8_1:43299157-43299176 Msa1195380:intron 60.0%
GCACCCCTTGCACGAGGTTT+GGG + chr8_1:43299163-43299182 None:intergenic 60.0%
GCGCACATGAAAAGAGGGGC+AGG - chr8_1:43299628-43299647 Msa1195380:intron 60.0%
GCCACGAACACCTTGGTTCC+AGG + chr8_1:43299985-43300004 None:intergenic 60.0%
CCGGGGCCGAATCACCATTA+AGG + chr8_1:43300547-43300566 None:intergenic 60.0%
GGCATCCCTGGCATTGCTCC+TGG - chr8_1:43297008-43297027 Msa1195380:CDS 65.0%
AGGAGGTTTAGGGGCAGCCC+CGG + chr8_1:43298024-43298043 None:intergenic 65.0%
GGTGCCTCCACATCGGCCAA+TGG - chr8_1:43298074-43298093 Msa1195380:intron 65.0%
GGGTTCTCCAGCACCTCCCT+CGG + chr8_1:43298449-43298468 None:intergenic 65.0%
!! GGAGGTGCTGGAGAACCCCT+TGG - chr8_1:43298451-43298470 Msa1195380:intron 65.0%
GGACGTACGACCTAACGGGG+TGG - chr8_1:43298598-43298617 Msa1195380:intron 65.0%
!! GACGTCGTTGGTGACCCCAG+CGG - chr8_1:43298634-43298653 Msa1195380:intron 65.0%
TCATGTGAGCCCACGGGAGC+TGG - chr8_1:43298700-43298719 Msa1195380:intron 65.0%
GACTCTCCTCCAGCTCCCGT+GGG + chr8_1:43298712-43298731 None:intergenic 65.0%
GGAGCTGGAGGAGAGTCCCA+AGG - chr8_1:43298715-43298734 Msa1195380:intron 65.0%
GTCTGCTGCAGAAGCCGCTG+CGG - chr8_1:43299066-43299085 Msa1195380:intron 65.0%
TCTGCTGCAGAAGCCGCTGC+GGG - chr8_1:43299067-43299086 Msa1195380:intron 65.0%
CCCCTTGCACGAGGTTTGGG+AGG + chr8_1:43299160-43299179 None:intergenic 65.0%
GGCACCCCTTGCACGAGGTT+TGG + chr8_1:43299164-43299183 None:intergenic 65.0%
!! TGAGAGGCACCCCTTGCACG+AGG + chr8_1:43299169-43299188 None:intergenic 65.0%
ACCAAACCCATCCGGACCCG+GGG + chr8_1:43300564-43300583 None:intergenic 65.0%
CACCAAACCCATCCGGACCC+GGG + chr8_1:43300565-43300584 None:intergenic 65.0%
CCACCAAACCCATCCGGACC+CGG + chr8_1:43300566-43300585 None:intergenic 65.0%
CCAGCATGTCAAGCCCTGCC+TGG + chr8_1:43301373-43301392 None:intergenic 65.0%
CCAGGCAGGGCTTGACATGC+TGG - chr8_1:43301370-43301389 Msa1195380:intron 65.0%
GGAGCTGGGGCAGAGTCCCA+CGG - chr8_1:43298532-43298551 Msa1195380:intron 70.0%
TGTGAGCCCACGGGAGCTGG+AGG - chr8_1:43298703-43298722 Msa1195380:intron 70.0%
GGACTCTCCTCCAGCTCCCG+TGG + chr8_1:43298713-43298732 None:intergenic 70.0%
! TGGTGATTCGGCCCCGGGTC+CGG - chr8_1:43300550-43300569 Msa1195380:intron 70.0%
ATTCGGCCCCGGGTCCGGAT+GGG - chr8_1:43300555-43300574 Msa1195380:intron 70.0%
! CCGGGTCCGGATGGGTTTGG+TGG - chr8_1:43300563-43300582 Msa1195380:intron 70.0%
GATTCGGCCCCGGGTCCGGA+TGG - chr8_1:43300554-43300573 Msa1195380:intron 75.0%
! GCCCCGGGTCCGGATGGGTT+TGG - chr8_1:43300560-43300579 Msa1195380:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 43296722 43302021 43296722 ID=Msa1195380;Name=Msa1195380
chr8_1 mRNA 43296722 43302021 43296722 ID=Msa1195380-mRNA-1;Parent=Msa1195380;Name=Msa1195380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.5|0.75|1|1|4|217|166
chr8_1 exon 43296722 43297085 43296722 ID=Msa1195380-mRNA-1:exon:14013;Parent=Msa1195380-mRNA-1
chr8_1 exon 43297250 43297399 43297250 ID=Msa1195380-mRNA-1:exon:14012;Parent=Msa1195380-mRNA-1
chr8_1 exon 43297757 43297862 43297757 ID=Msa1195380-mRNA-1:exon:14011;Parent=Msa1195380-mRNA-1
chr8_1 exon 43301924 43302021 43301924 ID=Msa1195380-mRNA-1:exon:14010;Parent=Msa1195380-mRNA-1
chr8_1 CDS 43301924 43302021 43301924 ID=Msa1195380-mRNA-1:cds;Parent=Msa1195380-mRNA-1
chr8_1 CDS 43297757 43297862 43297757 ID=Msa1195380-mRNA-1:cds;Parent=Msa1195380-mRNA-1
chr8_1 CDS 43297250 43297399 43297250 ID=Msa1195380-mRNA-1:cds;Parent=Msa1195380-mRNA-1
chr8_1 CDS 43296939 43297085 43296939 ID=Msa1195380-mRNA-1:cds;Parent=Msa1195380-mRNA-1
chr8_1 three_prime_UTR 43296722 43296938 43296722 ID=Msa1195380-mRNA-1:three_prime_utr;Parent=Msa1195380-mRNA-1
Gene Sequence

>Msa1195380

ATGGGTCAGCAAAAAGCTCCTCCTTTGGTGAAACTGAAGGGACCAATAGAAAGCCCTCGTCGAGGGGATGAAGAAAACGGTCTCACTTTGTTTGATCGATGCTACTTAGGCGTGGAGCTACTTAAATCTAATGCTGAAGGAAAAGAATCTGTACTCAAGTCCTTGTGGCACCACTCTGATGCTGTATTATGTTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACGCTAGTTGCATTACAAGATATAAGTCTGGAGAAAATATTTGATGATAATGGTCGAAAAACTCTCTTTTCGGAGTTCCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATTTGTCTCTCAAGCATGGGACGACCTGTCTCATACGAGAGAGCTGTTGCTTGGAAGGTGCTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCCTTTGTTTGA
Protein sequence

>Msa1195380

MGQQKAPPLVKLKGPIESPRRGDEENGLTLFDRCYLGVELLKSNAEGKESVLKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDISLEKIFDDNGRKTLFSEFPQIIQQGFACLQGGICLSSMGRPVSYERAVAWKVLNDEQNAHCICFMFVNWSFV*