AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0709400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709400 MtrunA17_Chr7g0265761 96.552 58 2 0 3 60 113 170 1.18e-30 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGATCTTCTTTGGATC+TGG 0.192571 5_1:-550572 Msa0709400:three_prime_UTR
GAAAATACAGTTGTTGATTT+AGG 0.205019 5_1:-550541 Msa0709400:three_prime_UTR
GTGAGCATCTTGATCTTCTT+TGG 0.206390 5_1:-550578 Msa0709400:three_prime_UTR
AGGGCACTGGTAATACTAAT+TGG 0.246573 5_1:-552319 Msa0709400:three_prime_UTR
TTTCAATATATAATGGATAT+TGG 0.266175 5_1:-552468 Msa0709400:three_prime_UTR
GTTATATGGTCATGTGTTAC+TGG 0.280175 5_1:-550442 Msa0709400:three_prime_UTR
GTTAATTTAATGATTGAATC+AGG 0.281965 5_1:-551858 Msa0709400:three_prime_UTR
ACAGGATTATGAGGACAATT+TGG 0.284874 5_1:+551952 None:intergenic
ATATATTTAAAATATTTAAT+TGG 0.290545 5_1:+551883 None:intergenic
AATCCACTTTCTAGATTATA+CGG 0.293808 5_1:+552489 None:intergenic
TTTGGAGTCTCCTGCTTCTC+TGG 0.303491 5_1:+550816 None:intergenic
TGCCTTAGGTTCTCATAATA+AGG 0.315168 5_1:-550649 Msa0709400:three_prime_UTR
GAATCCTGACTTTGGTTATA+TGG 0.319518 5_1:-550456 Msa0709400:three_prime_UTR
CAACTCCAATCACCTGTTAC+AGG 0.322194 5_1:+550767 None:intergenic
TGTTACTGGTGGTTTGGTTA+TGG 0.327232 5_1:-550428 Msa0709400:three_prime_UTR
TAAAGGAAGTCAAAACAATT+TGG 0.335360 5_1:+552049 None:intergenic
AGTTGTTGATTTAGGAAAAC+TGG 0.354420 5_1:-550533 Msa0709400:three_prime_UTR
TCTTGATCTTCTTTGGATCT+GGG 0.356960 5_1:-550571 Msa0709400:three_prime_UTR
GCAGATTTACCAGCCTGCTT+AGG 0.386812 5_1:+550855 None:intergenic
AAGTGGATTTCAATATATAA+TGG 0.387939 5_1:-552475 Msa0709400:three_prime_UTR
TGATGCATTTACAACGGGTT+TGG 0.397107 5_1:+552594 None:intergenic
CCTTCACTTGGCACTGTGCT+TGG 0.397753 5_1:+550626 None:intergenic
GTCATGTGTTACTGGTGGTT+TGG 0.406898 5_1:-550434 Msa0709400:three_prime_UTR
TTTAATTCAATAACTGCAGC+TGG 0.408069 5_1:+552369 None:intergenic
TAGTCTCCAGTTACCTTCTT+CGG 0.410069 5_1:+551637 None:intergenic
TTATTCTTTAAACATTCATA+TGG 0.410391 5_1:+550320 None:intergenic
TGGTTATGGTTAGGTGTTTG+AGG 0.419623 5_1:-550414 Msa0709400:three_prime_UTR
CTGGTGGTTTGGTTATGGTT+AGG 0.420510 5_1:-550423 Msa0709400:three_prime_UTR
AAAACATTCCTGTGATGATT+CGG 0.428683 5_1:-552188 Msa0709400:three_prime_UTR
TTTGCCTTCTTCACAGGTAC+AGG 0.429781 5_1:+551515 None:intergenic
TTTAAGACTGAAGATGCCTT+AGG 0.434410 5_1:-550663 Msa0709400:three_prime_UTR
CAGATTTACCAGCCTGCTTA+GGG 0.438934 5_1:+550856 None:intergenic
ACAGCTGCAAGCCCTGTAAC+AGG 0.439457 5_1:-550779 Msa0709400:intron
AAACATTCCTGTGATGATTC+GGG 0.444165 5_1:-552187 Msa0709400:three_prime_UTR
CACAGGTACAGGTGTTTCCT+TGG 0.451744 5_1:+551526 None:intergenic
GTGTTTGAGGCATATTAGAA+TGG 0.453336 5_1:-550401 Msa0709400:three_prime_UTR
TAGAAGAAGGTAGGAATACT+TGG 0.454339 5_1:-552295 Msa0709400:three_prime_UTR
ATTCCACTTAATGCTGCTAA+TGG 0.460106 5_1:-552730 Msa0709400:intron
CTTGATCTTCTTTGGATCTG+GGG 0.466662 5_1:-550570 Msa0709400:three_prime_UTR
TAATAAGCAGCCAGAGAAGC+AGG 0.473969 5_1:-550826 Msa0709400:three_prime_UTR
TTACCATTAGCAGCATTAAG+TGG 0.478094 5_1:+552727 None:intergenic
TTAAGATCGAATCCTGACTT+TGG 0.479498 5_1:-550464 Msa0709400:three_prime_UTR
GGGCACTGGTAATACTAATT+GGG 0.487636 5_1:-552318 Msa0709400:three_prime_UTR
TCATGACCGACCATGAAAAC+AGG 0.488637 5_1:+551934 None:intergenic
GTAATGTGTCGTTTAGCTCA+TGG 0.493327 5_1:-551722 Msa0709400:three_prime_UTR
TTGAATTAAATGAAATGCTA+CGG 0.495050 5_1:-552356 Msa0709400:three_prime_UTR
GTTTAGAGTATTATTCAACT+TGG 0.499516 5_1:-550496 Msa0709400:three_prime_UTR
CTGTAATCTCCACTAGACTT+TGG 0.505848 5_1:+550798 None:intergenic
TTACCAGCCTGCTTAGGGTA+AGG 0.510729 5_1:+550861 None:intergenic
GGCCTTATTATGAGAACCTA+AGG 0.516695 5_1:+550647 None:intergenic
TAACCGTATAATCTAGAAAG+TGG 0.519307 5_1:-552492 Msa0709400:exon
CTAATTGGGTAGAAGAAGGT+AGG 0.526740 5_1:-552304 Msa0709400:three_prime_UTR
ACCATGAAAACAGGATTATG+AGG 0.531502 5_1:+551943 None:intergenic
AACACCTGTACCTGTGAAGA+AGG 0.532518 5_1:-551519 Msa0709400:three_prime_UTR
TTAATTTAATGATTGAATCA+GGG 0.532605 5_1:-551857 Msa0709400:three_prime_UTR
GCACCATTCACCTCCAACAC+AGG 0.534916 5_1:+552616 None:intergenic
AATACTAATTGGGTAGAAGA+AGG 0.536290 5_1:-552308 Msa0709400:three_prime_UTR
AAAATACAAATGTAGGGCAC+TGG 0.544061 5_1:-552332 Msa0709400:three_prime_UTR
TGATACTCCTTACCCTAAGC+AGG 0.550019 5_1:-550868 Msa0709400:three_prime_UTR
TTTGTCACTCCAGAGAAGAC+TGG 0.556582 5_1:-551491 Msa0709400:intron
ATGACCATATAACCAAAGTC+AGG 0.561551 5_1:+550452 None:intergenic
TTTAGATACTGATTCTGAAG+AGG 0.569513 5_1:-552758 Msa0709400:intron
CAGTTCAGATTCATCTGATG+AGG 0.575058 5_1:-552533 Msa0709400:CDS
TGTAGGGAAACCTGTGTTGG+AGG 0.575298 5_1:-552626 Msa0709400:intron
ACTTACAAAATAGATGAAGC+TGG 0.575310 5_1:-552156 Msa0709400:three_prime_UTR
TAATTTAATGATTGAATCAG+GGG 0.575685 5_1:-551856 Msa0709400:three_prime_UTR
TTTAATATACGATGTAGACT+TGG 0.578812 5_1:-551810 Msa0709400:three_prime_UTR
ACTCCTTACCCTAAGCAGGC+TGG 0.582053 5_1:-550864 Msa0709400:three_prime_UTR
ATTGCCACCCGAATCATCAC+AGG 0.582150 5_1:+552180 None:intergenic
AAACCTGTGTTGGAGGTGAA+TGG 0.584764 5_1:-552619 Msa0709400:CDS
TTATGTAGGGAAACCTGTGT+TGG 0.588328 5_1:-552629 Msa0709400:intron
CATCGAACAACTTTGTGTAT+CGG 0.588928 5_1:+552403 None:intergenic
GTCGTTTAGCTCATGGCGAA+TGG 0.589514 5_1:-551715 Msa0709400:three_prime_UTR
GATAAGAGTTATCAACTATG+TGG 0.591682 5_1:-551907 Msa0709400:three_prime_UTR
ATATGGTCATGTGTTACTGG+TGG 0.595627 5_1:-550439 Msa0709400:three_prime_UTR
AACTCCAATCACCTGTTACA+GGG 0.600270 5_1:+550768 None:intergenic
CAGGAGACTCCAAAGTCTAG+TGG 0.603055 5_1:-550807 Msa0709400:three_prime_UTR
GAGGGTTGCTGAATCTTCCA+AGG 0.606410 5_1:-551543 Msa0709400:three_prime_UTR
CCAAGCACAGTGCCAAGTGA+AGG 0.607793 5_1:-550626 Msa0709400:three_prime_UTR
AGACTGAAGGGAGCAACAAG+AGG 0.612717 5_1:-551562 Msa0709400:three_prime_UTR
TGAGGATTCTAGTGAAGATG+AGG 0.614205 5_1:-552515 Msa0709400:CDS
GCATATTAGAATGGATGTGT+TGG 0.614978 5_1:-550392 Msa0709400:three_prime_UTR
CGATACACAAAGTTGTTCGA+TGG 0.619245 5_1:-552402 Msa0709400:three_prime_UTR
TGATGAGGAGACACCGAAGA+AGG 0.620434 5_1:-551650 Msa0709400:intron
ACAAAATAGATGAAGCTGGT+CGG 0.620919 5_1:-552152 Msa0709400:three_prime_UTR
GACTGAAGGGAGCAACAAGA+GGG 0.623418 5_1:-551561 Msa0709400:three_prime_UTR
AAGCGATGAAGATTCTGATG+AGG 0.625838 5_1:-551665 Msa0709400:three_prime_UTR
AATTTAATGATTGAATCAGG+GGG 0.634660 5_1:-551855 Msa0709400:three_prime_UTR
ACATTCCTACTTAAAAGTGA+AGG 0.659299 5_1:-552092 Msa0709400:three_prime_UTR
CATTCCTGTGATGATTCGGG+TGG 0.685010 5_1:-552184 Msa0709400:three_prime_UTR
TAGGGTAAGGAGTATCAACG+TGG 0.788217 5_1:+550874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTAAAATATTTAAT+TGG + chr5_1:551941-551960 None:intergenic 0.0%
!! CAATATAAAATAGTATTAAA+AGG + chr5_1:550830-550849 None:intergenic 10.0%
!!! TTTCAATATATAATGGATAT+TGG - chr5_1:551353-551372 Msa0709400:intron 15.0%
!!! TGTTTTCTAAAGAAATTTTT+TGG + chr5_1:551566-551585 None:intergenic 15.0%
!! ATATTTGTACCAAAAATTAA+TGG - chr5_1:551585-551604 Msa0709400:intron 15.0%
!!! CATATATAACCATTAATTTT+TGG + chr5_1:551597-551616 None:intergenic 15.0%
!! TTAATTTAATGATTGAATCA+GGG - chr5_1:551964-551983 Msa0709400:three_prime_UTR 15.0%
!! TCAATAAAAAATTCAGTAAT+CGG + chr5_1:552042-552061 None:intergenic 15.0%
!!! ATTACTGAATTTTTTATTGA+AGG - chr5_1:552042-552061 Msa0709400:three_prime_UTR 15.0%
!!! ATTCATATTTTAGTTTGTTT+TGG - chr5_1:552077-552096 Msa0709400:three_prime_UTR 15.0%
!! CTCAAAATTAAATTCAAATT+CGG + chr5_1:552230-552249 None:intergenic 15.0%
!!! ATATCTTATTTTATCAATGT+TGG + chr5_1:552482-552501 None:intergenic 15.0%
!! TTATTCTTTAAACATTCATA+TGG + chr5_1:553504-553523 None:intergenic 15.0%
!! AGATAAAAAAAATCCAAAGA+AGG + chr5_1:550358-550377 None:intergenic 20.0%
!! TCTTGTTGCTAAATTAATAT+TGG - chr5_1:550375-550394 Msa0709400:three_prime_UTR 20.0%
!!! CGTTAATGTTTTTGTATAAA+TGG - chr5_1:550555-550574 Msa0709400:three_prime_UTR 20.0%
!! AAGATAAAAGAATGTAGTTA+AGG + chr5_1:550920-550939 None:intergenic 20.0%
!!! ATTGTTCTAAACATTTATGT+AGG - chr5_1:551178-551197 Msa0709400:intron 20.0%
!!! TTGTTCTAAACATTTATGTA+GGG - chr5_1:551179-551198 Msa0709400:intron 20.0%
!!! AAGTGGATTTCAATATATAA+TGG - chr5_1:551346-551365 Msa0709400:intron 20.0%
!! TTGAATTAAATGAAATGCTA+CGG - chr5_1:551465-551484 Msa0709400:intron 20.0%
!! GTTAATTTAATGATTGAATC+AGG - chr5_1:551963-551982 Msa0709400:three_prime_UTR 20.0%
!! TAATTTAATGATTGAATCAG+GGG - chr5_1:551965-551984 Msa0709400:three_prime_UTR 20.0%
!!! TTTGTTTTCTAATTGTACTT+CGG + chr5_1:552805-552824 None:intergenic 20.0%
! GCAATATCAAATTATTTCAG+CGG - chr5_1:550313-550332 Msa0709400:three_prime_UTR 25.0%
! TAATATTGTGTTTCCTTCTT+TGG - chr5_1:550342-550361 Msa0709400:three_prime_UTR 25.0%
! CAAAAACATTAACGATTCAA+TGG + chr5_1:550549-550568 None:intergenic 25.0%
!!! ACATCTTTTGATTTGGTTTT+TGG - chr5_1:550713-550732 Msa0709400:intron 25.0%
!!! CATCTTTTGATTTGGTTTTT+GGG - chr5_1:550714-550733 Msa0709400:intron 25.0%
! GACAATAGAAATGCATAAAA+TGG + chr5_1:551134-551153 None:intergenic 25.0%
! AAAACAGAAAAAGAATCAGA+AGG - chr5_1:551249-551268 Msa0709400:intron 25.0%
! AATCCACTTTCTAGATTATA+CGG + chr5_1:551335-551354 None:intergenic 25.0%
! TACGGAAAAATACAAATGTA+GGG - chr5_1:551483-551502 Msa0709400:intron 25.0%
! TAAAGGAAGTCAAAACAATT+TGG + chr5_1:551775-551794 None:intergenic 25.0%
! CTAAAAACTCATTCACATAA+AGG + chr5_1:551792-551811 None:intergenic 25.0%
! AATTTAATGATTGAATCAGG+GGG - chr5_1:551966-551985 Msa0709400:three_prime_UTR 25.0%
! TTTAATATACGATGTAGACT+TGG - chr5_1:552011-552030 Msa0709400:three_prime_UTR 25.0%
!! AAACTAACAAACAAAGTACT+GGG + chr5_1:552367-552386 None:intergenic 25.0%
! AAAACTAACAAACAAAGTAC+TGG + chr5_1:552368-552387 None:intergenic 25.0%
! TAATGTCATCTAGATGTATA+AGG - chr5_1:552505-552524 Msa0709400:CDS 25.0%
!! TTAGTGACAATTTTGTCTTT+TGG - chr5_1:552744-552763 Msa0709400:CDS 25.0%
! ATTAACAAAGTAGAACTGAA+AGG - chr5_1:552881-552900 Msa0709400:intron 25.0%
!! ACGAGAATTATGATATTTTC+AGG - chr5_1:552909-552928 Msa0709400:intron 25.0%
!!! AGAATTATGATATTTTCAGG+TGG - chr5_1:552912-552931 Msa0709400:intron 25.0%
!! AAATCAACAACTGTATTTTC+AGG + chr5_1:553280-553299 None:intergenic 25.0%
!!! GAAAATACAGTTGTTGATTT+AGG - chr5_1:553280-553299 Msa0709400:intron 25.0%
!! GTTTAGAGTATTATTCAACT+TGG - chr5_1:553325-553344 Msa0709400:intron 25.0%
! TCACAAATCACTATCCTTTT+AGG - chr5_1:550408-550427 Msa0709400:three_prime_UTR 30.0%
GTCTCAAATCTTTATATGAC+AGG - chr5_1:550577-550596 Msa0709400:three_prime_UTR 30.0%
TTTATATGACAGGCATGTTT+GGG - chr5_1:550587-550606 Msa0709400:three_prime_UTR 30.0%
TATCCCATAACTGGAAATAT+GGG - chr5_1:550750-550769 Msa0709400:intron 30.0%
AAAGGATATGAATCATGTTC+CGG + chr5_1:550812-550831 None:intergenic 30.0%
ATATTAGAACGCATTGTTGT+TGG + chr5_1:550877-550896 None:intergenic 30.0%
!! TTTAGATACTGATTCTGAAG+AGG - chr5_1:551063-551082 Msa0709400:intron 30.0%
! TGTTTAGAACAATATGACAC+AGG + chr5_1:551171-551190 None:intergenic 30.0%
!!! TGTTTTGATGCATTTACAAC+GGG + chr5_1:551235-551254 None:intergenic 30.0%
!!! CTGTTTTGATGCATTTACAA+CGG + chr5_1:551236-551255 None:intergenic 30.0%
TAACCGTATAATCTAGAAAG+TGG - chr5_1:551329-551348 Msa0709400:intron 30.0%
TTTAATTCAATAACTGCAGC+TGG + chr5_1:551455-551474 None:intergenic 30.0%
CTACGGAAAAATACAAATGT+AGG - chr5_1:551482-551501 Msa0709400:intron 30.0%
AATACTAATTGGGTAGAAGA+AGG - chr5_1:551513-551532 Msa0709400:three_prime_UTR 30.0%
AAAACATTCCTGTGATGATT+CGG - chr5_1:551633-551652 Msa0709400:intron 30.0%
ACTTACAAAATAGATGAAGC+TGG - chr5_1:551665-551684 Msa0709400:three_prime_UTR 30.0%
ACATTCCTACTTAAAAGTGA+AGG - chr5_1:551729-551748 Msa0709400:three_prime_UTR 30.0%
!! AAACACCTTCACTTTTAAGT+AGG + chr5_1:551737-551756 None:intergenic 30.0%
GATAAGAGTTATCAACTATG+TGG - chr5_1:551914-551933 Msa0709400:three_prime_UTR 30.0%
!!! TGAGTTTTGTTTTAGACTGA+AGG - chr5_1:552246-552265 Msa0709400:three_prime_UTR 30.0%
!!! GAGTTTTGTTTTAGACTGAA+GGG - chr5_1:552247-552266 Msa0709400:three_prime_UTR 30.0%
!! AACTAACAAACAAAGTACTG+GGG + chr5_1:552366-552385 None:intergenic 30.0%
! TACAACATTAGTGTCGAATA+AGG + chr5_1:552428-552447 None:intergenic 30.0%
TTCGACACTAATGTTGTATA+CGG - chr5_1:552430-552449 Msa0709400:three_prime_UTR 30.0%
TTATGCAATAACAGTGCAAA+GGG + chr5_1:552552-552571 None:intergenic 30.0%
TTTATGCAATAACAGTGCAA+AGG + chr5_1:552553-552572 None:intergenic 30.0%
TGCATAAAATTGCATTGTTG+TGG - chr5_1:552565-552584 Msa0709400:CDS 30.0%
GTCAGAAAATATTTAACACG+TGG + chr5_1:552709-552728 None:intergenic 30.0%
!!! CACAATTTTATTTTGACTGC+AGG - chr5_1:553132-553151 Msa0709400:intron 30.0%
AGCTAAAAAAAACCTTCACT+TGG + chr5_1:553210-553229 None:intergenic 30.0%
!! AGTTGTTGATTTAGGAAAAC+TGG - chr5_1:553288-553307 Msa0709400:intron 30.0%
! GTTTTACCTCAACACCTAAA+AGG + chr5_1:550425-550444 None:intergenic 35.0%
!! TTAGGTGTTGAGGTAAAACT+TGG - chr5_1:550426-550445 Msa0709400:three_prime_UTR 35.0%
! AAAACTTGGTGAATCACTCA+AGG - chr5_1:550440-550459 Msa0709400:three_prime_UTR 35.0%
AAGCATATACCGATGAAATG+TGG + chr5_1:550491-550510 None:intergenic 35.0%
CTTTATATGACAGGCATGTT+TGG - chr5_1:550586-550605 Msa0709400:three_prime_UTR 35.0%
TTATATGACAGGCATGTTTG+GGG - chr5_1:550588-550607 Msa0709400:three_prime_UTR 35.0%
ACCATCAAACTTCACATACA+GGG + chr5_1:550648-550667 None:intergenic 35.0%
!! TCCTCAGACATCTTTTGATT+TGG - chr5_1:550706-550725 Msa0709400:intron 35.0%
ACCAAATCAAAAGATGTCTG+AGG + chr5_1:550710-550729 None:intergenic 35.0%
AATTTGAGCTATCCCATAAC+TGG - chr5_1:550741-550760 Msa0709400:intron 35.0%
CTATCCCATAACTGGAAATA+TGG - chr5_1:550749-550768 Msa0709400:intron 35.0%
! ATTTAGAATCGAATGCGAAC+CGG - chr5_1:550790-550809 Msa0709400:three_prime_UTR 35.0%
ATTCCACTTAATGCTGCTAA+TGG - chr5_1:551091-551110 Msa0709400:intron 35.0%
TTACCATTAGCAGCATTAAG+TGG + chr5_1:551097-551116 None:intergenic 35.0%
CATCGAACAACTTTGTGTAT+CGG + chr5_1:551421-551440 None:intergenic 35.0%
AAAATACAAATGTAGGGCAC+TGG - chr5_1:551489-551508 Msa0709400:intron 35.0%
TAGAAGAAGGTAGGAATACT+TGG - chr5_1:551526-551545 Msa0709400:three_prime_UTR 35.0%
AAACATTCCTGTGATGATTC+GGG - chr5_1:551634-551653 Msa0709400:intron 35.0%
ACAAAATAGATGAAGCTGGT+CGG - chr5_1:551669-551688 Msa0709400:three_prime_UTR 35.0%
ACAGGATTATGAGGACAATT+TGG + chr5_1:551872-551891 None:intergenic 35.0%
! TCCTCATAATCCTGTTTTCA+TGG - chr5_1:551877-551896 Msa0709400:three_prime_UTR 35.0%
ACCATGAAAACAGGATTATG+AGG + chr5_1:551881-551900 None:intergenic 35.0%
! CATAATCCTGTTTTCATGGT+CGG - chr5_1:551881-551900 Msa0709400:three_prime_UTR 35.0%
! ACAAATTTTGCCTTCTTCAC+AGG + chr5_1:552315-552334 None:intergenic 35.0%
AAAAACTAACCAGTCTTCTC+TGG + chr5_1:552342-552361 None:intergenic 35.0%
! TTAGTGTCGAATAAGGCTTA+GGG + chr5_1:552421-552440 None:intergenic 35.0%
! ATTAGTGTCGAATAAGGCTT+AGG + chr5_1:552422-552441 None:intergenic 35.0%
AGATGTATAAGGTTTGACAG+TGG - chr5_1:552516-552535 Msa0709400:CDS 35.0%
AACTACTTTGTGACTTATGC+TGG - chr5_1:552658-552677 Msa0709400:intron 35.0%
!!! TTATGATATTTTCAGGTGGC+AGG - chr5_1:552916-552935 Msa0709400:intron 35.0%
TAAGTGTGTATAGAACGATG+AGG + chr5_1:553104-553123 None:intergenic 35.0%
! TTTAAGACTGAAGATGCCTT+AGG - chr5_1:553158-553177 Msa0709400:intron 35.0%
TGCCTTAGGTTCTCATAATA+AGG - chr5_1:553172-553191 Msa0709400:intron 35.0%
ATCTTGATCTTCTTTGGATC+TGG - chr5_1:553249-553268 Msa0709400:intron 35.0%
TCTTGATCTTCTTTGGATCT+GGG - chr5_1:553250-553269 Msa0709400:intron 35.0%
TTAAGATCGAATCCTGACTT+TGG - chr5_1:553357-553376 Msa0709400:intron 35.0%
GAATCCTGACTTTGGTTATA+TGG - chr5_1:553365-553384 Msa0709400:intron 35.0%
ATGACCATATAACCAAAGTC+AGG + chr5_1:553372-553391 None:intergenic 35.0%
GTTATATGGTCATGTGTTAC+TGG - chr5_1:553379-553398 Msa0709400:intron 35.0%
! GTGTTTGAGGCATATTAGAA+TGG - chr5_1:553420-553439 Msa0709400:intron 35.0%
GCATATTAGAATGGATGTGT+TGG - chr5_1:553429-553448 Msa0709400:intron 35.0%
ACCAGAAGCAAAAACTGAAT+AGG - chr5_1:553474-553493 Msa0709400:intron 35.0%
! TCCTATTCAGTTTTTGCTTC+TGG + chr5_1:553478-553497 None:intergenic 35.0%
!! CACTATCCTTTTAGGTGTTG+AGG - chr5_1:550416-550435 Msa0709400:three_prime_UTR 40.0%
!! TGGATAAGCTCGCTATTTTC+TGG + chr5_1:550471-550490 None:intergenic 40.0%
CGAGCTTATCCACATTTCAT+CGG - chr5_1:550479-550498 Msa0709400:three_prime_UTR 40.0%
TATATGACAGGCATGTTTGG+GGG - chr5_1:550589-550608 Msa0709400:three_prime_UTR 40.0%
AACTTCACATACAGGGATAC+CGG + chr5_1:550641-550660 None:intergenic 40.0%
TCCCTGTATGTGAAGTTTGA+TGG - chr5_1:550644-550663 Msa0709400:three_prime_UTR 40.0%
GACCATCAAACTTCACATAC+AGG + chr5_1:550649-550668 None:intergenic 40.0%
GCTCCCATATTTCCAGTTAT+GGG + chr5_1:550756-550775 None:intergenic 40.0%
AGTGAAGATGAAGCTTCTGA+TGG - chr5_1:550945-550964 Msa0709400:intron 40.0%
TTATGTAGGGAAACCTGTGT+TGG - chr5_1:551192-551211 Msa0709400:intron 40.0%
! TGATGCATTTACAACGGGTT+TGG + chr5_1:551230-551249 None:intergenic 40.0%
CAGTTCAGATTCATCTGATG+AGG - chr5_1:551288-551307 Msa0709400:intron 40.0%
TGAGGATTCTAGTGAAGATG+AGG - chr5_1:551306-551325 Msa0709400:intron 40.0%
!! GTATCGGCACAACATCTTTT+TGG + chr5_1:551405-551424 None:intergenic 40.0%
CGATACACAAAGTTGTTCGA+TGG - chr5_1:551419-551438 Msa0709400:intron 40.0%
!! AGGGCACTGGTAATACTAAT+TGG - chr5_1:551502-551521 Msa0709400:three_prime_UTR 40.0%
!! GGGCACTGGTAATACTAATT+GGG - chr5_1:551503-551522 Msa0709400:three_prime_UTR 40.0%
CTAATTGGGTAGAAGAAGGT+AGG - chr5_1:551517-551536 Msa0709400:three_prime_UTR 40.0%
!! GTAATGTGTCGTTTAGCTCA+TGG - chr5_1:552099-552118 Msa0709400:three_prime_UTR 40.0%
AAGCGATGAAGATTCTGATG+AGG - chr5_1:552156-552175 Msa0709400:three_prime_UTR 40.0%
TAGTCTCCAGTTACCTTCTT+CGG + chr5_1:552187-552206 None:intergenic 40.0%
! TAGTGTCGAATAAGGCTTAG+GGG + chr5_1:552420-552439 None:intergenic 40.0%
AAGTGGTGAGAGAACATTGT+GGG + chr5_1:552603-552622 None:intergenic 40.0%
AAAGTGGTGAGAGAACATTG+TGG + chr5_1:552604-552623 None:intergenic 40.0%
ATGGAGCAGCTATTGCTTTA+TGG - chr5_1:552632-552651 Msa0709400:intron 40.0%
GTCCAACGAGGTTAAACTAT+CGG + chr5_1:552835-552854 None:intergenic 40.0%
ACAAATTAACGAGTCCAACG+AGG + chr5_1:552847-552866 None:intergenic 40.0%
CTGTAATCTCCACTAGACTT+TGG + chr5_1:553026-553045 None:intergenic 40.0%
AACTCCAATCACCTGTTACA+GGG + chr5_1:553056-553075 None:intergenic 40.0%
!! GGCCTTATTATGAGAACCTA+AGG + chr5_1:553177-553196 None:intergenic 40.0%
GTGAGCATCTTGATCTTCTT+TGG - chr5_1:553243-553262 Msa0709400:intron 40.0%
CTTGATCTTCTTTGGATCTG+GGG - chr5_1:553251-553270 Msa0709400:intron 40.0%
! ATATGGTCATGTGTTACTGG+TGG - chr5_1:553382-553401 Msa0709400:intron 40.0%
!! TGTTACTGGTGGTTTGGTTA+TGG - chr5_1:553393-553412 Msa0709400:intron 40.0%
TGGTTATGGTTAGGTGTTTG+AGG - chr5_1:553407-553426 Msa0709400:intron 40.0%
ACTTCACATACAGGGATACC+GGG + chr5_1:550640-550659 None:intergenic 45.0%
GATGGTCAGAAGCTTCAACT+TGG - chr5_1:550662-550681 Msa0709400:three_prime_UTR 45.0%
CGCTCCCATATTTCCAGTTA+TGG + chr5_1:550757-550776 None:intergenic 45.0%
!!! TATGGGAGCGTCTTCTTTTC+TGG - chr5_1:550767-550786 Msa0709400:intron 45.0%
AAACCTGTGTTGGAGGTGAA+TGG - chr5_1:551202-551221 Msa0709400:intron 45.0%
TCATGACCGACCATGAAAAC+AGG + chr5_1:551890-551909 None:intergenic 45.0%
AACACCTGTACCTGTGAAGA+AGG - chr5_1:552302-552321 Msa0709400:three_prime_UTR 45.0%
TTTGCCTTCTTCACAGGTAC+AGG + chr5_1:552309-552328 None:intergenic 45.0%
TTTGTCACTCCAGAGAAGAC+TGG - chr5_1:552330-552349 Msa0709400:three_prime_UTR 45.0%
GGTACTAATGCTGCTCATCT+TGG - chr5_1:552451-552470 Msa0709400:three_prime_UTR 45.0%
AGTGGTGAGAGAACATTGTG+GGG + chr5_1:552602-552621 None:intergenic 45.0%
CTCACCACTTTGCCTATTCA+TGG - chr5_1:552613-552632 Msa0709400:CDS 45.0%
TGCTCCATGAATAGGCAAAG+TGG + chr5_1:552620-552639 None:intergenic 45.0%
GCAATAGCTGCTCCATGAAT+AGG + chr5_1:552628-552647 None:intergenic 45.0%
GACCGATAGTTTAACCTCGT+TGG - chr5_1:552830-552849 Msa0709400:intron 45.0%
!! TAGGGTAAGGAGTATCAACG+TGG + chr5_1:552950-552969 None:intergenic 45.0%
TGATACTCCTTACCCTAAGC+AGG - chr5_1:552953-552972 Msa0709400:intron 45.0%
CAGATTTACCAGCCTGCTTA+GGG + chr5_1:552968-552987 None:intergenic 45.0%
TAATAAGCAGCCAGAGAAGC+AGG - chr5_1:552995-553014 Msa0709400:intron 45.0%
CAACTCCAATCACCTGTTAC+AGG + chr5_1:553057-553076 None:intergenic 45.0%
TGTATAGAACGATGAGGAGG+AGG + chr5_1:553098-553117 None:intergenic 45.0%
GTGTGTATAGAACGATGAGG+AGG + chr5_1:553101-553120 None:intergenic 45.0%
! GTCATGTGTTACTGGTGGTT+TGG - chr5_1:553387-553406 Msa0709400:intron 45.0%
!! CTGGTGGTTTGGTTATGGTT+AGG - chr5_1:553398-553417 Msa0709400:intron 45.0%
GGGAGGTCAGCAAGGATAAA+GGG - chr5_1:550609-550628 Msa0709400:three_prime_UTR 50.0%
CAAGGATAAAGGGAGTGACC+CGG - chr5_1:550619-550638 Msa0709400:three_prime_UTR 50.0%
TGTAGGGAAACCTGTGTTGG+AGG - chr5_1:551195-551214 Msa0709400:intron 50.0%
! CATTCCTGTGATGATTCGGG+TGG - chr5_1:551637-551656 Msa0709400:intron 50.0%
ATTGCCACCCGAATCATCAC+AGG + chr5_1:551644-551663 None:intergenic 50.0%
AGGGGGCTATTGTGTCTTAG+TGG - chr5_1:551983-552002 Msa0709400:three_prime_UTR 50.0%
! GTCGTTTAGCTCATGGCGAA+TGG - chr5_1:552106-552125 Msa0709400:three_prime_UTR 50.0%
TGATGAGGAGACACCGAAGA+AGG - chr5_1:552171-552190 Msa0709400:three_prime_UTR 50.0%
GAGACACCGAAGAAGGTAAC+TGG - chr5_1:552178-552197 Msa0709400:three_prime_UTR 50.0%
AGACTGAAGGGAGCAACAAG+AGG - chr5_1:552259-552278 Msa0709400:three_prime_UTR 50.0%
GACTGAAGGGAGCAACAAGA+GGG - chr5_1:552260-552279 Msa0709400:three_prime_UTR 50.0%
GAGGGTTGCTGAATCTTCCA+AGG - chr5_1:552278-552297 Msa0709400:three_prime_UTR 50.0%
CACAGGTACAGGTGTTTCCT+TGG + chr5_1:552298-552317 None:intergenic 50.0%
TTACCAGCCTGCTTAGGGTA+AGG + chr5_1:552963-552982 None:intergenic 50.0%
GCAGATTTACCAGCCTGCTT+AGG + chr5_1:552969-552988 None:intergenic 50.0%
! TTTGGAGTCTCCTGCTTCTC+TGG + chr5_1:553008-553027 None:intergenic 50.0%
CAGGAGACTCCAAAGTCTAG+TGG - chr5_1:553014-553033 Msa0709400:intron 50.0%
CAAGCCCTGTAACAGGTGAT+TGG - chr5_1:553049-553068 Msa0709400:intron 50.0%
ATGACAGGCATGTTTGGGGG+AGG - chr5_1:550592-550611 Msa0709400:three_prime_UTR 55.0%
ATGTTTGGGGGAGGTCAGCA+AGG - chr5_1:550601-550620 Msa0709400:three_prime_UTR 55.0%
GGGGAGGTCAGCAAGGATAA+AGG - chr5_1:550608-550627 Msa0709400:three_prime_UTR 55.0%
GCACCATTCACCTCCAACAC+AGG + chr5_1:551208-551227 None:intergenic 55.0%
ACTCCTTACCCTAAGCAGGC+TGG - chr5_1:552957-552976 Msa0709400:intron 55.0%
ACAGCTGCAAGCCCTGTAAC+AGG - chr5_1:553042-553061 Msa0709400:intron 55.0%
CCTTCACTTGGCACTGTGCT+TGG + chr5_1:553198-553217 None:intergenic 55.0%
CCAAGCACAGTGCCAAGTGA+AGG - chr5_1:553195-553214 Msa0709400:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 550302 553541 550302 ID=Msa0709400;Name=Msa0709400
chr5_1 mRNA 550302 553541 550302 ID=Msa0709400-mRNA-1;Parent=Msa0709400;Name=Msa0709400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|0.83|1|0.83|6|1465|62
chr5_1 exon 550302 550689 550302 ID=Msa0709400-mRNA-1:exon:231;Parent=Msa0709400-mRNA-1
chr5_1 exon 550780 550912 550780 ID=Msa0709400-mRNA-1:exon:230;Parent=Msa0709400-mRNA-1
chr5_1 exon 551492 551582 551492 ID=Msa0709400-mRNA-1:exon:229;Parent=Msa0709400-mRNA-1
chr5_1 exon 551651 552643 551651 ID=Msa0709400-mRNA-1:exon:228;Parent=Msa0709400-mRNA-1
chr5_1 exon 552731 552775 552731 ID=Msa0709400-mRNA-1:exon:227;Parent=Msa0709400-mRNA-1
chr5_1 exon 553538 553541 553538 ID=Msa0709400-mRNA-1:exon:226;Parent=Msa0709400-mRNA-1
chr5_1 CDS 553538 553541 553538 ID=Msa0709400-mRNA-1:cds;Parent=Msa0709400-mRNA-1
chr5_1 CDS 552731 552775 552731 ID=Msa0709400-mRNA-1:cds;Parent=Msa0709400-mRNA-1
chr5_1 CDS 552504 552643 552504 ID=Msa0709400-mRNA-1:cds;Parent=Msa0709400-mRNA-1
chr5_1 three_prime_UTR 551651 552503 551651 ID=Msa0709400-mRNA-1:three_prime_utr;Parent=Msa0709400-mRNA-1
chr5_1 three_prime_UTR 551492 551582 551492 ID=Msa0709400-mRNA-1:three_prime_utr;Parent=Msa0709400-mRNA-1
chr5_1 three_prime_UTR 550780 550912 550780 ID=Msa0709400-mRNA-1:three_prime_utr;Parent=Msa0709400-mRNA-1
chr5_1 three_prime_UTR 550302 550689 550302 ID=Msa0709400-mRNA-1:three_prime_utr;Parent=Msa0709400-mRNA-1
Gene Sequence

>Msa0709400

ATGGATACTGATTCTGAAGAGGAAGATATTCCACTTAATGCTGCTAATGGGAAACCTGTGTTGGAGGTGAATGGTGCCAAACCCGTTGTAAATGCATCAAAACAGAAAAAGAATCAGAAGGATGCTAGTACTGACGACAGTTCAGATTCATCTGATGAGGATTCTAGTGAAGATGAGGTAACCGTATAA

Protein sequence

>Msa0709400

MDTDSEEEDIPLNAANGKPVLEVNGAKPVVNASKQKKNQKDASTDDSSDSSDEDSSEDEVTV*