AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196520 MtrunA17_Chr8g0362061 97.368 836 22 0 1 836 1 836 0.0 1701
Msa1196520 MtrunA17_Chr3g0094741 59.357 871 309 10 10 836 27 896 0.0 961
Msa1196520 MtrunA17_Chr5g0442001 60.505 871 297 12 10 836 18 885 0.0 958
Msa1196520 MtrunA17_Chr1g0202151 50.783 894 341 15 1 840 1 849 0.0 848
Msa1196520 MtrunA17_Chr6g0463421 50.173 865 383 13 1 840 4 845 0.0 813
Msa1196520 MtrunA17_Chr1g0167471 47.722 878 381 16 1 840 1 838 0.0 741
Msa1196520 MtrunA17_Chr7g0244411 52.639 701 297 8 7 703 9 678 0.0 737
Msa1196520 MtrunA17_Chr3g0109811 45.041 726 373 12 10 717 16 733 0.0 599
Msa1196520 MtrunA17_Chr4g0013271 55.123 488 204 2 211 698 4 476 0.0 565
Msa1196520 MtrunA17_Chr3g0130621 34.946 372 200 9 247 610 39 376 3.47e-54 194
Msa1196520 MtrunA17_Chr3g0130621 32.941 340 210 5 290 628 20 342 3.90e-47 174
Msa1196520 MtrunA17_Chr3g0130621 32.827 329 190 6 243 571 88 385 5.27e-42 159
Msa1196520 MtrunA17_Chr3g0130621 32.068 237 146 4 393 628 16 238 7.52e-23 102
Msa1196520 MtrunA17_Chr8g0384631 36.271 295 169 6 315 608 28 304 5.67e-46 169
Msa1196520 MtrunA17_Chr8g0384631 33.333 303 180 5 271 573 36 316 1.20e-39 151
Msa1196520 MtrunA17_Chr8g0384631 30.769 299 180 5 330 628 1 272 3.45e-33 132
Msa1196520 MtrunA17_Chr2g0317861 29.499 339 216 6 287 618 165 487 3.69e-36 143
Msa1196520 MtrunA17_Chr2g0317861 31.273 275 169 5 342 612 116 374 1.02e-24 108
Msa1196520 MtrunA17_Chr2g0317861 29.091 275 174 5 274 542 205 464 3.22e-23 104
Msa1196520 MtrunA17_Chr2g0317861 27.660 188 123 4 242 426 288 465 4.87e-12 69.3
Msa1196520 MtrunA17_Chr5g0415871 29.255 376 199 8 306 625 16 380 1.51e-34 136
Msa1196520 MtrunA17_Chr6g0457381 28.378 370 212 13 243 596 4 336 3.05e-28 118
Msa1196520 MtrunA17_Chr6g0457381 27.607 326 219 8 306 628 5 316 8.44e-23 101
Msa1196520 MtrunA17_Chr6g0457381 30.348 201 124 2 286 471 196 395 6.74e-20 93.2
Msa1196520 MtrunA17_Chr7g0233601 30.347 346 202 8 242 580 119 432 3.97e-28 118
Msa1196520 MtrunA17_Chr7g0233601 32.474 388 218 14 247 612 51 416 1.30e-27 117
Msa1196520 MtrunA17_Chr7g0233601 30.387 362 199 11 305 633 47 388 5.76e-24 105
Msa1196520 MtrunA17_Chr7g0239601 37.143 175 106 3 287 461 39 209 2.23e-27 110
Msa1196520 MtrunA17_Chr7g0239601 35.567 194 102 6 334 523 34 208 9.82e-23 97.4
Msa1196520 MtrunA17_Chr7g0239601 29.630 189 111 4 437 621 30 200 3.02e-18 84.3
Msa1196520 MtrunA17_Chr7g0239601 33.813 139 88 2 269 407 73 207 1.15e-16 79.7
Msa1196520 MtrunA17_Chr3g0123301 30.084 359 211 12 345 687 154 488 4.04e-27 116
Msa1196520 MtrunA17_Chr3g0123301 25.867 375 231 9 242 594 165 514 2.67e-24 108
Msa1196520 MtrunA17_Chr3g0123301 27.139 339 221 8 293 618 154 479 2.18e-21 99.0
Msa1196520 MtrunA17_Chr7g0253611 27.114 343 205 10 260 585 116 430 6.30e-26 115
Msa1196520 MtrunA17_Chr7g0253611 27.473 364 214 12 235 585 146 472 8.97e-25 111
Msa1196520 MtrunA17_Chr7g0253611 32.056 287 157 15 317 589 116 378 5.91e-21 99.0
Msa1196520 MtrunA17_Chr7g0253611 29.046 241 139 6 400 628 145 365 3.23e-17 87.0
Msa1196520 MtrunA17_Chr3g0130871 27.701 361 186 11 280 628 28 325 4.78e-25 107
Msa1196520 MtrunA17_Chr3g0130871 30.241 291 121 9 242 461 48 327 5.85e-24 103
Msa1196520 MtrunA17_Chr3g0130871 27.586 261 158 7 381 628 20 262 4.40e-16 80.5
Msa1196520 MtrunA17_Chr7g0220131 31.104 299 169 11 358 633 23 307 2.61e-24 107
Msa1196520 MtrunA17_Chr7g0220131 27.548 363 221 9 290 628 67 411 4.66e-23 103
Msa1196520 MtrunA17_Chr7g0220131 28.351 194 106 8 235 416 135 307 1.51e-12 70.9
Msa1196520 MtrunA17_Chr3g0142381 26.087 391 227 13 269 628 40 399 2.69e-24 108
Msa1196520 MtrunA17_Chr3g0142381 27.530 247 143 8 242 464 170 404 2.19e-17 86.7
Msa1196520 MtrunA17_Chr3g0112381 36.735 147 89 3 316 461 17 160 6.22e-22 93.6
Msa1196520 MtrunA17_Chr3g0112381 31.333 150 95 4 260 407 15 158 2.53e-16 77.4
Msa1196520 MtrunA17_Chr3g0112381 34.646 127 80 2 497 621 26 151 2.75e-13 68.6
Msa1196520 MtrunA17_Chr3g0112381 31.646 158 85 6 372 523 19 159 4.62e-13 68.2
Msa1196520 MtrunA17_Chr5g0404371 26.291 426 214 20 271 629 48 440 9.68e-19 90.1
Msa1196520 MtrunA17_Chr5g0404371 25.223 337 223 10 242 578 134 441 3.20e-16 82.4
Msa1196520 MtrunA17_Chr3g0140201 25.939 293 184 9 342 609 51 335 2.75e-12 70.1
Msa1196520 MtrunA17_Chr3g0140201 23.692 325 197 9 207 503 32 333 3.87e-12 69.7
Msa1196520 MtrunA17_Chr1g0146211 25.256 293 183 10 342 607 60 343 4.18e-12 68.9
Msa1196520 MtrunA17_Chr1g0146211 25.746 268 155 8 226 461 58 313 6.03e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196520 AT1G69710.1 57.143 854 333 13 10 839 25 869 0.0 933
Msa1196520 AT1G69710.2 57.143 854 333 13 10 839 12 856 0.0 932
Msa1196520 AT5G19420.1 57.805 884 300 15 9 836 19 885 0.0 922
Msa1196520 AT5G19420.3 57.853 885 300 15 9 837 19 886 0.0 918
Msa1196520 AT5G19420.2 57.175 885 306 15 8 836 52 919 0.0 911
Msa1196520 AT5G12350.1 57.078 876 314 14 10 836 19 881 0.0 902
Msa1196520 AT5G42140.2 51.609 870 364 16 1 840 1 843 0.0 815
Msa1196520 AT5G42140.1 51.609 870 364 16 1 840 1 843 0.0 815
Msa1196520 AT1G76950.1 50.748 869 375 13 1 836 1 849 0.0 810
Msa1196520 AT3G47660.2 49.388 899 380 13 1 836 1 887 0.0 794
Msa1196520 AT3G47660.3 49.166 899 379 14 1 836 1 884 0.0 782
Msa1196520 AT3G47660.5 49.166 899 379 14 1 836 1 884 0.0 782
Msa1196520 AT3G47660.1 49.437 888 373 13 10 836 15 887 0.0 782
Msa1196520 AT4G14368.1 52.564 702 291 6 10 703 17 684 0.0 765
Msa1196520 AT4G14368.4 52.564 702 291 6 10 703 17 684 0.0 764
Msa1196520 AT4G14368.2 52.422 702 290 7 10 703 17 682 0.0 760
Msa1196520 AT4G14368.3 52.422 702 290 7 10 703 12 677 0.0 760
Msa1196520 AT3G23270.2 49.406 757 327 10 10 753 13 726 0.0 743
Msa1196520 AT3G23270.1 49.141 757 325 11 10 753 13 722 0.0 732
Msa1196520 AT3G47660.4 45.386 932 381 18 10 836 15 923 0.0 701
Msa1196520 AT3G47660.6 49.169 722 303 11 167 836 100 809 0.0 622
Msa1196520 AT3G47660.7 49.169 722 303 11 167 836 33 742 0.0 622
Msa1196520 AT1G65920.1 44.778 766 369 16 10 753 14 747 0.0 606
Msa1196520 AT1G65920.2 43.443 732 360 16 44 753 2 701 0.0 558
Msa1196520 AT5G63860.1 34.759 374 210 9 242 610 33 377 1.38e-53 193
Msa1196520 AT5G63860.1 36.070 341 199 6 290 628 20 343 1.10e-51 187
Msa1196520 AT5G63860.1 32.827 329 191 6 243 571 88 386 8.61e-41 156
Msa1196520 AT5G63860.1 31.224 237 149 4 393 628 16 239 1.75e-22 102
Msa1196520 AT1G27060.1 31.296 409 237 11 229 628 2 375 1.38e-40 154
Msa1196520 AT5G60870.1 31.624 351 203 8 242 580 119 444 4.71e-35 139
Msa1196520 AT5G60870.1 30.513 390 231 12 244 613 50 419 5.73e-35 139
Msa1196520 AT5G60870.1 29.060 351 204 9 305 628 49 381 1.26e-30 126
Msa1196520 AT5G60870.2 31.285 358 202 9 242 580 119 451 7.06e-33 133
Msa1196520 AT5G60870.2 30.227 397 230 13 244 613 50 426 8.42e-33 133
Msa1196520 AT5G60870.2 28.933 356 208 9 305 633 49 386 5.06e-31 127
Msa1196520 AT5G60870.4 33.218 289 163 7 242 525 119 382 8.70e-31 125
Msa1196520 AT5G60870.4 29.060 351 204 9 305 628 49 381 1.05e-30 125
Msa1196520 AT5G60870.4 30.595 353 206 11 244 577 50 382 1.75e-30 125
Msa1196520 AT5G60870.4 26.724 232 145 7 242 464 171 386 1.97e-18 89.0
Msa1196520 AT5G16040.1 28.804 368 210 12 244 596 7 337 2.03e-30 125
Msa1196520 AT5G16040.1 28.875 329 210 10 306 628 7 317 3.42e-26 112
Msa1196520 AT5G16040.1 30.208 192 117 2 286 461 197 387 5.12e-18 87.8
Msa1196520 AT3G02510.1 28.846 364 215 12 244 596 7 337 1.08e-29 122
Msa1196520 AT3G02510.1 28.869 336 201 12 306 628 7 317 8.13e-26 111
Msa1196520 AT3G02510.1 30.208 192 117 2 286 461 197 387 1.60e-18 89.4
Msa1196520 AT5G08710.1 28.878 419 227 18 246 631 53 433 1.42e-28 120
Msa1196520 AT5G08710.1 27.164 335 226 9 301 628 44 367 5.94e-21 97.1
Msa1196520 AT3G02510.3 29.139 302 180 8 306 596 1 279 3.31e-27 114
Msa1196520 AT3G02510.3 26.269 335 195 10 275 581 23 333 1.38e-26 112
Msa1196520 AT3G02510.3 29.930 284 161 12 358 628 1 259 4.12e-21 95.9
Msa1196520 AT3G02510.3 29.412 221 130 6 272 490 81 277 1.01e-19 92.0
Msa1196520 AT5G60870.3 31.655 278 163 6 315 580 13 275 2.04e-26 110
Msa1196520 AT5G60870.3 26.772 254 155 8 271 513 21 254 6.89e-21 94.0
Msa1196520 AT5G60870.3 30.045 223 135 4 413 628 4 212 3.71e-17 83.2
Msa1196520 AT5G60870.3 28.740 254 156 7 369 613 13 250 2.37e-16 80.9
Msa1196520 AT5G16040.2 28.173 323 200 10 306 618 7 307 3.53e-25 108
Msa1196520 AT5G16040.2 28.939 311 173 10 244 542 7 281 5.23e-24 104
Msa1196520 AT5G16040.2 27.372 274 165 9 358 621 7 256 1.62e-15 79.3
Msa1196520 AT3G02510.2 28.701 331 190 12 306 619 7 308 5.26e-25 107
Msa1196520 AT3G02510.2 27.844 334 194 11 244 564 7 306 2.55e-22 99.0
Msa1196520 AT3G02510.2 29.856 278 153 11 358 621 7 256 1.80e-17 84.7
Msa1196520 AT3G02300.2 28.926 363 216 9 290 628 77 421 9.37e-25 109
Msa1196520 AT3G02300.2 30.986 142 83 5 287 416 179 317 1.40e-13 74.7
Msa1196520 AT3G02300.2 25.328 229 157 5 247 464 201 426 1.03e-11 68.6
Msa1196520 AT3G02300.1 28.926 363 216 9 290 628 66 410 1.14e-24 108
Msa1196520 AT3G02300.1 30.986 142 83 5 287 416 168 306 1.53e-13 74.3
Msa1196520 AT3G02300.1 25.328 229 157 5 247 464 190 415 1.28e-11 68.6
Msa1196520 AT3G55580.1 31.295 278 143 8 328 576 225 483 1.14e-23 106
Msa1196520 AT3G55580.1 30.104 289 175 8 191 456 196 480 1.76e-23 105
Msa1196520 AT3G55580.1 32.389 247 148 7 391 621 233 476 5.02e-19 91.7
Msa1196520 AT3G55580.1 26.222 225 124 6 432 628 222 432 1.19e-11 68.6
Msa1196520 AT3G53830.3 34.503 171 108 3 287 456 297 464 4.37e-23 103
Msa1196520 AT3G53830.3 28.814 295 162 7 264 527 193 470 6.87e-23 103
Msa1196520 AT3G53830.3 28.115 313 171 10 318 621 193 460 2.26e-18 89.7
Msa1196520 AT3G53830.3 24.250 400 208 14 286 628 55 416 3.36e-12 70.1
Msa1196520 AT3G53830.4 34.503 171 108 3 287 456 325 492 5.96e-23 103
Msa1196520 AT3G53830.4 28.425 292 159 9 318 576 221 495 1.12e-20 97.1
Msa1196520 AT3G53830.4 29.710 138 91 3 272 407 362 495 1.02e-11 68.9
Msa1196520 AT3G53830.4 24.891 229 126 5 432 628 230 444 7.58e-11 65.9
Msa1196520 AT3G03790.1 26.700 397 236 15 243 628 151 503 1.21e-22 105
Msa1196520 AT3G03790.1 28.846 260 159 8 339 589 133 375 6.19e-20 96.3
Msa1196520 AT3G03790.1 28.214 280 166 9 366 628 101 362 9.85e-17 85.9
Msa1196520 AT3G03790.1 24.710 259 139 11 242 488 261 475 5.86e-11 67.0
Msa1196520 AT3G26100.5 26.260 377 227 11 242 594 162 511 1.21e-22 103
Msa1196520 AT3G26100.5 28.620 297 178 9 345 628 151 426 2.79e-21 99.0
Msa1196520 AT3G26100.6 26.260 377 227 11 242 594 162 511 1.21e-22 103
Msa1196520 AT3G26100.6 28.620 297 178 9 345 628 151 426 2.79e-21 99.0
Msa1196520 AT3G26100.2 26.260 377 227 11 242 594 162 511 1.21e-22 103
Msa1196520 AT3G26100.2 28.620 297 178 9 345 628 151 426 2.79e-21 99.0
Msa1196520 AT3G03790.3 26.700 397 236 15 243 628 154 506 1.30e-22 104
Msa1196520 AT3G03790.3 27.985 268 162 9 331 589 133 378 5.23e-20 96.3
Msa1196520 AT3G03790.3 28.571 231 136 6 410 628 152 365 8.38e-17 85.9
Msa1196520 AT3G03790.3 31.638 177 109 3 459 628 140 311 2.55e-12 71.6
Msa1196520 AT3G03790.3 24.710 259 139 11 242 488 264 478 7.11e-11 66.6
Msa1196520 AT3G03790.2 26.700 397 236 15 243 628 154 506 1.33e-22 104
Msa1196520 AT3G03790.2 28.731 268 160 10 331 589 133 378 4.84e-20 96.7
Msa1196520 AT3G03790.2 28.571 231 136 6 410 628 152 365 9.05e-17 85.9
Msa1196520 AT3G03790.2 29.333 225 143 4 459 672 140 359 2.47e-12 71.6
Msa1196520 AT3G03790.2 24.710 259 139 11 242 488 264 478 6.44e-11 67.0
Msa1196520 AT3G15430.6 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.6 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G15430.4 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.4 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G15430.2 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.2 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G15430.3 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.3 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G15430.5 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.5 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G15430.1 32.479 234 135 7 264 490 246 463 4.13e-22 101
Msa1196520 AT3G15430.1 26.415 371 239 8 295 648 120 473 2.17e-19 92.8
Msa1196520 AT3G26100.3 26.260 377 227 11 242 594 62 411 4.88e-22 100
Msa1196520 AT3G26100.3 28.620 297 178 9 345 628 51 326 4.95e-21 97.4
Msa1196520 AT3G26100.3 28.763 299 173 12 282 558 147 427 5.16e-19 91.3
Msa1196520 AT3G26100.4 26.260 377 227 11 242 594 62 411 4.88e-22 100
Msa1196520 AT3G26100.4 28.620 297 178 9 345 628 51 326 4.95e-21 97.4
Msa1196520 AT3G26100.4 28.763 299 173 12 282 558 147 427 5.16e-19 91.3
Msa1196520 AT3G26100.1 26.260 377 227 11 242 594 62 411 4.88e-22 100
Msa1196520 AT3G26100.1 28.620 297 178 9 345 628 51 326 4.95e-21 97.4
Msa1196520 AT3G26100.1 28.763 299 173 12 282 558 147 427 5.16e-19 91.3
Msa1196520 AT5G11580.1 29.341 334 185 12 342 634 21 344 6.99e-21 98.2
Msa1196520 AT5G11580.1 26.488 336 206 10 287 586 18 348 2.51e-18 90.1
Msa1196520 AT5G11580.1 25.899 417 237 16 242 607 35 430 3.82e-17 86.3
Msa1196520 AT5G11580.1 25.606 289 149 9 393 635 17 285 5.28e-15 79.3
Msa1196520 AT1G19880.1 24.552 391 237 11 270 628 41 405 4.79e-20 95.5
Msa1196520 AT1G19880.1 28.125 192 122 4 276 461 226 407 1.74e-16 84.0
Msa1196520 AT5G08710.2 26.756 299 204 7 301 594 44 332 9.38e-20 92.0
Msa1196520 AT5G08710.2 28.862 246 149 6 255 490 103 332 6.16e-19 89.7
Msa1196520 AT5G08710.2 36.875 160 97 2 473 628 44 203 4.94e-18 87.0
Msa1196520 AT5G08710.2 28.391 317 170 15 246 542 53 332 4.59e-16 80.9
Msa1196520 AT5G48330.1 26.684 386 232 13 272 618 70 443 6.32e-19 91.3
Msa1196520 AT5G48330.1 28.440 218 123 8 413 616 46 244 2.10e-12 70.9
Msa1196520 AT5G48330.2 26.753 385 232 13 272 618 70 442 7.65e-19 90.9
Msa1196520 AT5G48330.2 28.111 217 124 8 413 616 46 243 4.26e-12 69.7
Msa1196520 AT3G53830.1 28.017 232 133 5 264 464 193 421 1.85e-18 89.4
Msa1196520 AT3G53830.1 29.046 241 122 8 318 524 193 418 5.74e-15 78.6
Msa1196520 AT3G53830.1 24.129 402 210 14 286 630 55 418 1.17e-12 71.2
Msa1196520 AT3G53830.2 28.017 232 133 5 264 464 221 449 2.64e-18 89.4
Msa1196520 AT3G53830.2 29.046 241 122 8 318 524 221 446 7.44e-15 78.6
Msa1196520 AT3G53830.2 24.675 231 128 5 432 630 230 446 3.98e-11 66.6
Msa1196520 AT5G11580.2 28.745 247 131 7 287 503 48 279 1.52e-16 83.2
Msa1196520 AT5G11580.2 28.808 302 134 13 328 607 37 279 2.60e-14 76.3
Msa1196520 AT5G11580.2 30.270 185 90 7 476 628 10 187 4.39e-11 66.2

Find 209 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGTTTGCCTTCATAAA+TGG 0.133641 8_1:-45968869 Msa1196520:CDS
ACTTGCGCTGTTACTTATTC+TGG 0.145039 8_1:-45969701 Msa1196520:CDS
CTTACATTGGAAAGCTTAAA+AGG 0.159569 8_1:+45971909 None:intergenic
AATGCACCACTTACTTTCTT+AGG 0.172489 8_1:+45969602 None:intergenic
CGGTATGTCTTGTTGGTATT+TGG 0.172984 8_1:+45968705 None:intergenic
ACATGGGGAAAGGGTTTAAA+TGG 0.198373 8_1:-45968996 Msa1196520:CDS
AAGGGTTTGATATTGCTTTA+TGG 0.200399 8_1:-45973230 Msa1196520:five_prime_UTR
TCTTTACTCATATGGTATTC+TGG 0.263591 8_1:-45971044 Msa1196520:CDS
GGTTCATATCTTCTAAAGTA+TGG 0.266938 8_1:-45971957 Msa1196520:CDS
CTCAGAGGATATAGAGAAAT+TGG 0.290048 8_1:+45970159 None:intergenic
CCAGGGTTTCATGTGGTGTT+TGG 0.309231 8_1:-45969406 Msa1196520:CDS
GAGAAATTGGTAATTGATTC+CGG 0.312792 8_1:+45970172 None:intergenic
CAATGATCGGTCCTTGGATT+TGG 0.313804 8_1:-45970774 Msa1196520:intron
ACATTTGGTGATGGAACTTT+TGG 0.314725 8_1:-45969503 Msa1196520:CDS
GTTGTTGTTCAAATGGGTAT+TGG 0.316748 8_1:-45973193 Msa1196520:five_prime_UTR
ATATAGCTATCGTGTGATTC+AGG 0.324723 8_1:+45968504 None:intergenic
AAGGGTTTAAATGGGCAATT+AGG 0.325201 8_1:-45968987 Msa1196520:CDS
TTGTTGTTCAAATGGGTATT+GGG 0.327820 8_1:-45973192 Msa1196520:five_prime_UTR
ATTGATCATTCTGCCTGTTC+AGG 0.334331 8_1:-45968837 Msa1196520:CDS
GGACTTGACTTTGATGAAAC+TGG 0.336843 8_1:+45968351 None:intergenic
ACTCTCCTTCCGGGGAATCT+AGG 0.347521 8_1:-45968428 Msa1196520:CDS
TTACAGACAAATGGTGTATA+TGG 0.350930 8_1:+45970405 None:intergenic
CTAGTGGAAGGCTGTTCACC+TGG 0.350979 8_1:-45969325 Msa1196520:CDS
ACTCACAACTCTGGGTTACT+TGG 0.354183 8_1:-45969653 Msa1196520:CDS
TAACTAATCAGTTATATAGA+AGG 0.361293 8_1:+45968195 None:intergenic
GATCTTCTTGTGCCAGACTT+TGG 0.361796 8_1:+45970432 None:intergenic
AAAATTCTTCGCCAAACAAA+TGG 0.363905 8_1:-45970252 Msa1196520:CDS
CTATTAAGACTTTCTTCGTT+TGG 0.364132 8_1:-45968564 Msa1196520:CDS
AATCATCAAACTCTCCTTCC+GGG 0.366222 8_1:-45968437 Msa1196520:CDS
TATTGTTGTTGTTGTTCAAA+TGG 0.370581 8_1:-45973200 Msa1196520:five_prime_UTR
CTTGCGCTGTTACTTATTCT+GGG 0.371524 8_1:-45969700 Msa1196520:CDS
AAATCATCAAACTCTCCTTC+CGG 0.372799 8_1:-45968438 Msa1196520:CDS
ACTGTTTCAAAGATCATTCC+TGG 0.377860 8_1:-45970993 Msa1196520:CDS
AAAGCCTTTACCCATTTGTT+TGG 0.383178 8_1:+45970241 None:intergenic
GCTGGACAGTTGTTTACATT+TGG 0.387945 8_1:-45969518 Msa1196520:CDS
TTCTGGGGATCTTTATACCT+GGG 0.393415 8_1:-45969684 Msa1196520:CDS
TGTTGTTTGCCTTCATAAAT+GGG 0.395289 8_1:-45968868 Msa1196520:CDS
GGTACCAATGATGGAATTCT+TGG 0.395646 8_1:-45969998 Msa1196520:CDS
ATTGTTGTTGTTGTTCAAAT+GGG 0.396476 8_1:-45973199 Msa1196520:five_prime_UTR
TGCTGTAAGTTCATCCAGTC+AGG 0.399956 8_1:-45970074 Msa1196520:CDS
AGGATGAGTCTTTACTCATA+TGG 0.403259 8_1:-45971052 Msa1196520:CDS
ATTCTGGGGATCTTTATACC+TGG 0.406986 8_1:-45969685 Msa1196520:CDS
CTAAGAGTATCAATGAGCTT+AGG 0.410734 8_1:+45969764 None:intergenic
GGTAATTGATTCCGGTTGAC+TGG 0.411382 8_1:+45970180 None:intergenic
ACAAAGATGAAGCTGAAATC+TGG 0.415748 8_1:-45970542 Msa1196520:CDS
TTTAGCTGGGGCGAGGAGTC+AGG 0.415809 8_1:-45969827 Msa1196520:CDS
GCAATTCCGTCGACATCTCC+AGG 0.420811 8_1:+45970280 None:intergenic
GAAGCTGAAATCTGGTTTGC+TGG 0.429921 8_1:-45970534 Msa1196520:CDS
TAGTAAGGCCGCTAAAACAC+AGG 0.430602 8_1:-45968592 Msa1196520:CDS
AAACCTCTGCCTTGGAAGTC+AGG 0.431631 8_1:+45969021 None:intergenic
TCTTATCAACATCTCCTAGT+TGG 0.432869 8_1:+45969285 None:intergenic
GTTCTCGATGTTCAGAGTAT+TGG 0.436063 8_1:-45969896 Msa1196520:CDS
CATCCGTCTCTGAAGTAGAT+AGG 0.437896 8_1:+45969951 None:intergenic
AGCAGGGAGAAATGTTTAGC+TGG 0.439587 8_1:-45969841 Msa1196520:CDS
GATCTTTATACCTGGGGTGA+TGG 0.439958 8_1:-45969677 Msa1196520:CDS
TTCCGGTTGACTGGAGCTAT+TGG 0.443292 8_1:+45970189 None:intergenic
GCGGTATCCCCGACCTGAAA+AGG 0.443335 8_1:-45970822 Msa1196520:CDS
AAGCTCATTGATACTCTTAG+TGG 0.443528 8_1:-45969761 Msa1196520:CDS
TAAGAGTATCAATGAGCTTA+GGG 0.447451 8_1:+45969765 None:intergenic
TACCAATAGCTCCAGTCAAC+CGG 0.450882 8_1:-45970191 Msa1196520:CDS
TGCATTCCTTCCCAAGGCAT+TGG 0.454012 8_1:-45969930 Msa1196520:CDS
GCAATTACAGCTCTTAAGAA+AGG 0.455939 8_1:-45971978 Msa1196520:CDS
GGTGATGGTACTCACAACTC+TGG 0.458763 8_1:-45969662 Msa1196520:CDS
TAGTGGAAGGCTGTTCACCT+GGG 0.463768 8_1:-45969324 Msa1196520:CDS
TATATACAATGATCGGTCCT+TGG 0.465832 8_1:-45970780 Msa1196520:CDS
ACAAACACGGTATGTCTTGT+TGG 0.469711 8_1:+45968698 None:intergenic
ACAGTTGCATTGACAACATC+AGG 0.472607 8_1:-45969185 Msa1196520:CDS
GAGGTTTACACATGGGGAAA+GGG 0.472686 8_1:-45969005 Msa1196520:CDS
AGAGGTTTACACATGGGGAA+AGG 0.474833 8_1:-45969006 Msa1196520:CDS
TGGATTACGACAGCCTGAAC+AGG 0.477526 8_1:+45968824 None:intergenic
ACAGCTATTGTTACATCAGC+TGG 0.478900 8_1:-45969536 Msa1196520:CDS
CATATGTGTCGTGCGGACCT+TGG 0.487265 8_1:-45969562 Msa1196520:CDS
AGCTCTCATAGATCTCTTGC+TGG 0.489572 8_1:+45968737 None:intergenic
AGCTTAAAAGGGCAGAACTT+CGG 0.492164 8_1:+45971921 None:intergenic
AACTCTGGGTTACTTGGGCA+TGG 0.495528 8_1:-45969647 Msa1196520:CDS
TAAGAAAGTAAGTGGTGCAT+TGG 0.496471 8_1:-45969600 Msa1196520:CDS
TGTCGGTTTGCAAGATAGTA+AGG 0.499277 8_1:-45968607 Msa1196520:CDS
TCCTGTGTGTGTAACTGCAT+TGG 0.499841 8_1:-45969249 Msa1196520:CDS
TTACATTGGAAAGCTTAAAA+GGG 0.500589 8_1:+45971910 None:intergenic
AAACTTACAGTTCGCTGCCC+AGG 0.504326 8_1:+45970975 None:intergenic
TATTCTGAAAGTCCAAAGTC+TGG 0.505833 8_1:-45970444 Msa1196520:CDS
GAGGAGTCAGGAGGTAGGCT+TGG 0.506288 8_1:-45969815 Msa1196520:CDS
GCTAAACATTTCTCCCTGCT+TGG 0.507080 8_1:+45969844 None:intergenic
TTCGCCAAACAAATGGGTAA+AGG 0.509241 8_1:-45970245 Msa1196520:CDS
TTCTAAAGTATGGGCGAAGA+GGG 0.512324 8_1:-45971947 Msa1196520:CDS
TTTCTCTTATATACAATGAT+CGG 0.513534 8_1:-45970787 Msa1196520:CDS
CTGGTATTTCCTAGATTCCC+CGG 0.514614 8_1:+45968419 None:intergenic
AGTACAGCTTACGGACAACT+TGG 0.515773 8_1:-45969143 Msa1196520:CDS
AGTTATAAGTTTAAAAGCAC+AGG 0.518587 8_1:-45968262 Msa1196520:CDS
GAATGGAAAACTACAGCTGC+GGG 0.518608 8_1:-45968469 Msa1196520:CDS
TGGGGAGAAGGTACCAATGA+TGG 0.520706 8_1:-45970007 Msa1196520:CDS
TTCATTACAAGAACCCTGAC+TGG 0.521089 8_1:+45970060 None:intergenic
AAATTCTTCGCCAAACAAAT+GGG 0.522585 8_1:-45970251 Msa1196520:CDS
CAAGGCATTGGAATCAAAAG+TGG 0.523820 8_1:-45969918 Msa1196520:CDS
TCTGGGGATCTTTATACCTG+GGG 0.524166 8_1:-45969683 Msa1196520:CDS
TCAGGACATGTATATACAAT+GGG 0.524940 8_1:-45969167 Msa1196520:CDS
AGTCCTGACTTCCAAGGCAG+AGG 0.526456 8_1:-45969024 Msa1196520:CDS
CGGGAAGTAGAAACTTTGAA+AGG 0.527881 8_1:-45969440 Msa1196520:CDS
GATGGAGATAAAGGCCAACT+AGG 0.528334 8_1:-45969299 Msa1196520:CDS
GGCGGTGGTCTGCGTAGAGT+TGG 0.529076 8_1:-45969977 Msa1196520:CDS
CACTCGAAATTCTGCATCTG+AGG 0.529119 8_1:-45970119 Msa1196520:CDS
CTCACAACTCTGGGTTACTT+GGG 0.530467 8_1:-45969652 Msa1196520:CDS
CCATGTGTAAACCTCTGCCT+TGG 0.531516 8_1:+45969013 None:intergenic
GGGACCTTCCCACTTGCTGC+AGG 0.531540 8_1:+45969116 None:intergenic
GTTCATATCTTCTAAAGTAT+GGG 0.531808 8_1:-45971956 Msa1196520:CDS
GCAGGGAGAAATGTTTAGCT+GGG 0.537387 8_1:-45969840 Msa1196520:CDS
ACCGCCAAGAATTCCATCAT+TGG 0.537574 8_1:+45969994 None:intergenic
AAAGTAAGTGGTGCATTGGA+AGG 0.537645 8_1:-45969596 Msa1196520:CDS
TCTTGTTGGTATTTGGAGCA+AGG 0.538182 8_1:+45968712 None:intergenic
ACACTTCTCGAGCTAGGACT+TGG 0.541113 8_1:+45968627 None:intergenic
GCACACTGCTGCAGTTGTTG+AGG 0.544045 8_1:-45969384 Msa1196520:CDS
ATAGCAGCTCAAATATTCCT+CGG 0.544119 8_1:-45969460 Msa1196520:CDS
ACTCATATGGTATTCTGGCA+AGG 0.546907 8_1:-45971039 Msa1196520:CDS
GGGGCGAGGAGTCAGGAGGT+AGG 0.549166 8_1:-45969820 Msa1196520:CDS
ACACACACAGGAACTAGTCT+AGG 0.550723 8_1:+45969260 None:intergenic
CCACTTGCGATAGTTACCTC+TGG 0.551479 8_1:+45970494 None:intergenic
CGACAGTAGGGATATCGAGC+AGG 0.553404 8_1:-45973114 Msa1196520:intron
TGAAAGGGTTGAGAGCAACC+AGG 0.555126 8_1:-45969424 Msa1196520:CDS
CTTGTTGGTATTTGGAGCAA+GGG 0.555599 8_1:+45968713 None:intergenic
TACTCGGTACCCATTTATGA+AGG 0.555895 8_1:+45968859 None:intergenic
TTGATTCCAATGCCTTGGGA+AGG 0.555990 8_1:+45969924 None:intergenic
TAGCAGCTCAAATATTCCTC+GGG 0.556930 8_1:-45969459 Msa1196520:CDS
GGTTGACTGGAGCTATTGGT+AGG 0.557171 8_1:+45970193 None:intergenic
GACGGATGCATTCCTTCCCA+AGG 0.559077 8_1:-45969936 Msa1196520:CDS
GCTTGGACATGGTGCAGAAG+TGG 0.559354 8_1:-45969798 Msa1196520:CDS
GTGGAAGGCTGTTCACCTGG+GGG 0.559494 8_1:-45969322 Msa1196520:CDS
TGGATTCCTAAGAAAGTAAG+TGG 0.559525 8_1:-45969608 Msa1196520:CDS
GGGAAGTAGAAACTTTGAAA+GGG 0.560051 8_1:-45969439 Msa1196520:CDS
ACTGGATGAACTTACAGCAC+TGG 0.560249 8_1:+45970078 None:intergenic
CTCTATATCCTCTGAGTCCG+TGG 0.560535 8_1:-45970152 Msa1196520:CDS
TCTTCTAGTCAGTCATCTAG+TGG 0.561119 8_1:-45969341 Msa1196520:CDS
ACAATGGGAAGTACAGCTTA+CGG 0.563717 8_1:-45969152 Msa1196520:CDS
AAACCGACACTTCTCGAGCT+AGG 0.565087 8_1:+45968621 None:intergenic
AGACTGCATAATATCTTCAC+AGG 0.565986 8_1:+45968320 None:intergenic
GAGCAAGCTCAGAAATAGAC+TGG 0.566647 8_1:+45968400 None:intergenic
ATCAGGACATGTATATACAA+TGG 0.569222 8_1:-45969168 Msa1196520:CDS
CATGGGGAAAGGGTTTAAAT+GGG 0.573162 8_1:-45968995 Msa1196520:CDS
ATCTTCAGAAAGGCGACAGT+AGG 0.573842 8_1:-45973127 Msa1196520:CDS
ACCAATGATGGAATTCTTGG+CGG 0.574092 8_1:-45969995 Msa1196520:CDS
CTTCTAAAGTATGGGCGAAG+AGG 0.577406 8_1:-45971948 Msa1196520:CDS
CAGTTGTTTACATTTGGTGA+TGG 0.578477 8_1:-45969512 Msa1196520:CDS
AACTAATCAGTTATATAGAA+GGG 0.579346 8_1:+45968196 None:intergenic
TTCAAAGTTTCTACTTCCCG+AGG 0.581800 8_1:+45969443 None:intergenic
TTGTCCTGCAGCAAGTGGGA+AGG 0.581823 8_1:-45969120 Msa1196520:CDS
TTAAATGGGCAATTAGGTCA+TGG 0.582909 8_1:-45968981 Msa1196520:CDS
AATGATGGAATTCTTGGCGG+TGG 0.582920 8_1:-45969992 Msa1196520:CDS
CTTGGTTGTCCTGCAGCAAG+TGG 0.584127 8_1:-45969125 Msa1196520:CDS
GCTATGATCTCCATGTCCTA+AGG 0.585295 8_1:+45969478 None:intergenic
TGGAAGGCTGTTCACCTGGG+GGG 0.588651 8_1:-45969321 Msa1196520:CDS
CAATTAGGTCATGGTGACAA+TGG 0.589854 8_1:-45968972 Msa1196520:CDS
TTGCGCTGTTACTTATTCTG+GGG 0.590097 8_1:-45969699 Msa1196520:CDS
AGAAATGTTTAGCTGGGGCG+AGG 0.591143 8_1:-45969834 Msa1196520:CDS
ATGGGAATGAAGTTAGTCAC+TGG 0.591170 8_1:-45969628 Msa1196520:CDS
CTGTTTCAAAGATCATTCCT+GGG 0.591649 8_1:-45970992 Msa1196520:CDS
AGTGGAAGGCTGTTCACCTG+GGG 0.592440 8_1:-45969323 Msa1196520:CDS
GAAAGGGTTGAGAGCAACCA+GGG 0.592582 8_1:-45969423 Msa1196520:CDS
CTAGTCAGTCATCTAGTGGA+AGG 0.593834 8_1:-45969337 Msa1196520:CDS
GTTGTGAGTACCATCACCCC+AGG 0.593859 8_1:+45969667 None:intergenic
TTCATAGAAGATATTGCCTG+TGG 0.594368 8_1:-45969062 Msa1196520:CDS
AACGTTGAGTTAGTAGCATG+TGG 0.595287 8_1:-45969734 Msa1196520:CDS
CGTCATAATTGTTACAACTG+TGG 0.595561 8_1:-45968783 Msa1196520:CDS
ACTCTGGGTTACTTGGGCAT+GGG 0.596504 8_1:-45969646 Msa1196520:CDS
GTCATGGTGACAATGGTCAC+AGG 0.598091 8_1:-45968965 Msa1196520:CDS
TGAATGGCTGATCTTCAGAA+AGG 0.598192 8_1:-45973137 Msa1196520:CDS
TCGAGTGCTTGAGTTATCCA+CGG 0.599249 8_1:+45970135 None:intergenic
AAGTGGACGCACCAAATCCA+AGG 0.601301 8_1:+45970763 None:intergenic
GACAAATGGTGTATATGGAG+TGG 0.601419 8_1:+45970410 None:intergenic
TGCAACATGATATGAACCAC+AGG 0.601755 8_1:+45969046 None:intergenic
TCTTCAGAAAGGCGACAGTA+GGG 0.606233 8_1:-45973126 Msa1196520:CDS
AACATTTGTCGTGTAGCTTG+TGG 0.611691 8_1:-45969218 Msa1196520:CDS
CAAGGCAGAGGTTTACACAT+GGG 0.611958 8_1:-45969012 Msa1196520:CDS
CAGGCAGAATGATCAATACT+CGG 0.613049 8_1:+45968843 None:intergenic
TCTCGAGCTAGGACTTGGCA+AGG 0.615776 8_1:+45968632 None:intergenic
AAGGCAGAGGTTTACACATG+GGG 0.616096 8_1:-45969011 Msa1196520:CDS
ATCATCAAACTCTCCTTCCG+GGG 0.622622 8_1:-45968436 Msa1196520:CDS
GCCAATGCAGTTACACACAC+AGG 0.623037 8_1:+45969248 None:intergenic
AGTCCTAGCTCGAGAAGTGT+CGG 0.623140 8_1:-45968624 Msa1196520:CDS
TGTTGCAGTCCTGACTTCCA+AGG 0.627362 8_1:-45969030 Msa1196520:CDS
ATATCTTCACAGGATTGTCG+TGG 0.630163 8_1:+45968330 None:intergenic
CCAAGGCAGAGGTTTACACA+TGG 0.630845 8_1:-45969013 Msa1196520:CDS
GTGATGGTACTCACAACTCT+GGG 0.633041 8_1:-45969661 Msa1196520:CDS
CCAAACACCACATGAAACCC+TGG 0.636537 8_1:+45969406 None:intergenic
GATGTTCAGAGTATTGGATG+TGG 0.638790 8_1:-45969890 Msa1196520:CDS
TCAGGAGGTAGGCTTGGACA+TGG 0.641370 8_1:-45969809 Msa1196520:CDS
TATTTCCTAGATTCCCCGGA+AGG 0.641547 8_1:+45968423 None:intergenic
AAACCTATCTACTTCAGAGA+CGG 0.643663 8_1:-45969954 Msa1196520:CDS
GTGATTCAGGAAGCTTTGAG+TGG 0.647465 8_1:+45968517 None:intergenic
TGAGTTATCCACGGACTCAG+AGG 0.648113 8_1:+45970144 None:intergenic
AGAGCAACCAGGGTTTCATG+TGG 0.650506 8_1:-45969413 Msa1196520:CDS
TGAGGTGATAAATGAATCTG+TGG 0.653207 8_1:-45969366 Msa1196520:CDS
GCTGTAAGTTCATCCAGTCA+GGG 0.654183 8_1:-45970073 Msa1196520:CDS
GTATTGGGTCTATTTACATG+AGG 0.656264 8_1:-45973177 Msa1196520:five_prime_UTR
AGCTGGGGCGAGGAGTCAGG+AGG 0.656587 8_1:-45969824 Msa1196520:CDS
TTGGTTGTCCTGCAGCAAGT+GGG 0.660247 8_1:-45969124 Msa1196520:CDS
TGACTTTGATGAAACTGGAG+AGG 0.660772 8_1:+45968356 None:intergenic
AATCTATGCACAGATCTGCA+AGG 0.663397 8_1:-45970565 Msa1196520:intron
CAATTCCGTCGACATCTCCA+GGG 0.663484 8_1:+45970281 None:intergenic
TGAATGGAAAACTACAGCTG+CGG 0.664121 8_1:-45968470 Msa1196520:CDS
CAGGACCCTGGAGATGTCGA+CGG 0.667187 8_1:-45970286 Msa1196520:CDS
GTTGACTGACAAGATACTCG+TGG 0.668993 8_1:+45968378 None:intergenic
CCAGAGGTAACTATCGCAAG+TGG 0.669234 8_1:-45970494 Msa1196520:CDS
CAGGGAGAAATGTTTAGCTG+GGG 0.669498 8_1:-45969839 Msa1196520:CDS
AGTAAGGCCGCTAAAACACA+GGG 0.673297 8_1:-45968591 Msa1196520:CDS
AATAACAGTCATCACAAACA+CGG 0.700305 8_1:+45968685 None:intergenic
TAATCCAGGCAACATTTCAG+CGG 0.703626 8_1:-45970841 Msa1196520:intron
GTAACAATAGCTGTGTGCCA+AGG 0.707960 8_1:+45969545 None:intergenic
CTGAAAGCGATAGTTACCAG+AGG 0.719908 8_1:-45970510 Msa1196520:CDS
CGTGTATCATATGTGTCGTG+CGG 0.720034 8_1:-45969569 Msa1196520:CDS
TCAATGCAACTGTAAGACTG+TGG 0.758243 8_1:+45969195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTTTGA+TGG - chr8_1:45968277-45968296 Msa1196520:CDS 10.0%
!! TATTGTTTAATTAATATACT+TGG - chr8_1:45969401-45969420 Msa1196520:CDS 10.0%
!! ATGAAAAAAATTATCTAAAA+AGG + chr8_1:45969716-45969735 None:intergenic 10.0%
!!! AATAGTTATTTCTATAATCA+AGG - chr8_1:45969186-45969205 Msa1196520:CDS 15.0%
!!! GTTATTTTATATAAGTTGTA+AGG - chr8_1:45969227-45969246 Msa1196520:CDS 15.0%
!! AAAATTATCTAAAAAGGAAA+AGG + chr8_1:45969710-45969729 None:intergenic 15.0%
!! ATATTAACAAATTCATAGAA+TGG - chr8_1:45969772-45969791 Msa1196520:CDS 15.0%
!!! ATTTCATTTAAAGTTTTGTA+AGG + chr8_1:45970077-45970096 None:intergenic 15.0%
!! ATAAATAGTACAATATTCTT+AGG - chr8_1:45970197-45970216 Msa1196520:CDS 15.0%
!! AAAAAAGGATCATTATATAA+AGG + chr8_1:45970623-45970642 None:intergenic 15.0%
!! ATTAAGACAATATTCAATAA+AGG + chr8_1:45970830-45970849 None:intergenic 15.0%
!!! TTTTTTTTTTTTGATGGGTA+AGG - chr8_1:45968283-45968302 Msa1196520:CDS 20.0%
!!! TTTTTTTTTTTGATGGGTAA+GGG - chr8_1:45968284-45968303 Msa1196520:CDS 20.0%
!! ATTAAACTAGAAAGTAAGTA+AGG + chr8_1:45968459-45968478 None:intergenic 20.0%
!! AATTAAATTGTTACTGAGTA+GGG + chr8_1:45968729-45968748 None:intergenic 20.0%
!! AAATTAAATTGTTACTGAGT+AGG + chr8_1:45968730-45968749 None:intergenic 20.0%
!! TTTAAGAAGCTCTTAATTAA+GGG + chr8_1:45969009-45969028 None:intergenic 20.0%
!! ATTTAAGAAGCTCTTAATTA+AGG + chr8_1:45969010-45969029 None:intergenic 20.0%
!!! TTCTTGTAATGTTATTTACT+TGG - chr8_1:45969252-45969271 Msa1196520:CDS 20.0%
!! TATGTAACGAAAAAATCAAA+CGG + chr8_1:45969743-45969762 None:intergenic 20.0%
!! GAAACAAGTACATAATATAT+AGG + chr8_1:45970323-45970342 None:intergenic 20.0%
!! TTTCTCTTATATACAATGAT+CGG - chr8_1:45970745-45970764 Msa1196520:intron 20.0%
!!! CTTACTAATTTTTAAACAAC+AGG - chr8_1:45971227-45971246 Msa1196520:intron 20.0%
!!! TTTAGGTGATGTTTTTATTT+GGG - chr8_1:45971506-45971525 Msa1196520:intron 20.0%
!!! TATATTTTTCCAGTTTTGAA+TGG - chr8_1:45973046-45973065 Msa1196520:intron 20.0%
!! TATTGTTGTTGTTGTTCAAA+TGG - chr8_1:45968332-45968351 Msa1196520:CDS 25.0%
!! ATTGTTGTTGTTGTTCAAAT+GGG - chr8_1:45968333-45968352 Msa1196520:CDS 25.0%
!! ATTTTCTATTGCAACTTGAA+TGG - chr8_1:45968379-45968398 Msa1196520:CDS 25.0%
!!! ATTTCTCTTGTTGTTTTTCT+AGG + chr8_1:45968619-45968638 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGA+TGG - chr8_1:45968648-45968667 Msa1196520:CDS 25.0%
!! TTTGATTTCATAAGCTATCT+TGG - chr8_1:45968852-45968871 Msa1196520:CDS 25.0%
!! ACATGTCATAAACTTTTCAT+AGG - chr8_1:45968917-45968936 Msa1196520:CDS 25.0%
!! ATTTACTTGGTGAAATAAGT+TGG - chr8_1:45969265-45969284 Msa1196520:CDS 25.0%
! AATAAGTTGTACACAACTTA+CGG - chr8_1:45969360-45969379 Msa1196520:CDS 25.0%
! TAAAGGGAACATTAAAAGTT+AGG + chr8_1:45969531-45969550 None:intergenic 25.0%
!! ACTTTTAATGTTCCCTTTAT+AGG - chr8_1:45969532-45969551 Msa1196520:CDS 25.0%
!!! GTTCATATCTTCTAAAGTAT+GGG - chr8_1:45969576-45969595 Msa1196520:CDS 25.0%
! TTACATTGGAAAGCTTAAAA+GGG + chr8_1:45969625-45969644 None:intergenic 25.0%
! AGGTAGTTTCATATCATTAT+GGG + chr8_1:45969690-45969709 None:intergenic 25.0%
! AAGGTAGTTTCATATCATTA+TGG + chr8_1:45969691-45969710 None:intergenic 25.0%
!!! CAATTAGTTTCATCATTTTC+TGG - chr8_1:45969816-45969835 Msa1196520:CDS 25.0%
! TAGCTTATCATCACAAATAA+CGG - chr8_1:45969974-45969993 Msa1196520:CDS 25.0%
!!! AAAGTTTTGTAAGGTAATGA+AGG + chr8_1:45970068-45970087 None:intergenic 25.0%
!! CTGTTCTATTCAATACTTTT+TGG - chr8_1:45970449-45970468 Msa1196520:CDS 25.0%
!!! TGATTTGTTAACAATAATCC+AGG - chr8_1:45970677-45970696 Msa1196520:intron 25.0%
! AAGTTATTGTTACAGACAAA+TGG + chr8_1:45971139-45971158 None:intergenic 25.0%
!!! AATGAAGATTTTGATGCTTT+AGG - chr8_1:45971489-45971508 Msa1196520:intron 25.0%
!!! CTTTAGGTGATGTTTTTATT+TGG - chr8_1:45971505-45971524 Msa1196520:intron 25.0%
!!! TTAGGTGATGTTTTTATTTG+GGG - chr8_1:45971507-45971526 Msa1196520:intron 25.0%
!! AGTTATAAGTTTAAAAGCAC+AGG - chr8_1:45973270-45973289 Msa1196520:five_prime_UTR 25.0%
!!! TGTTTTGATCAATTTGAGAG+TGG - chr8_1:45968238-45968257 Msa1196520:CDS 30.0%
AAGGGTTTGATATTGCTTTA+TGG - chr8_1:45968302-45968321 Msa1196520:CDS 30.0%
! TTGTTGTTCAAATGGGTATT+GGG - chr8_1:45968340-45968359 Msa1196520:CDS 30.0%
TGGTTAACGATAGAACATTA+TGG - chr8_1:45968680-45968699 Msa1196520:CDS 30.0%
! TAATTAAGTTGCTCATCAGA+AGG + chr8_1:45969155-45969174 None:intergenic 30.0%
TTGTCAAACACTTACACAAA+TGG - chr8_1:45969315-45969334 Msa1196520:CDS 30.0%
!! GGTTCATATCTTCTAAAGTA+TGG - chr8_1:45969575-45969594 Msa1196520:CDS 30.0%
CTTACATTGGAAAGCTTAAA+AGG + chr8_1:45969626-45969645 None:intergenic 30.0%
ATTCATATCTTGCATGAAGT+GGG + chr8_1:45969858-45969877 None:intergenic 30.0%
TATTCATATCTTGCATGAAG+TGG + chr8_1:45969859-45969878 None:intergenic 30.0%
AACTTTCAAACTGGAACTAT+TGG + chr8_1:45969941-45969960 None:intergenic 30.0%
CTGTATGAAAACTTTCAAAC+TGG + chr8_1:45969950-45969969 None:intergenic 30.0%
AGGTAATGAAGGATTTACAA+TGG + chr8_1:45970057-45970076 None:intergenic 30.0%
! TAGTGAACTACAACAGATTT+TGG - chr8_1:45970152-45970171 Msa1196520:CDS 30.0%
ATGTAGAATCGACAAGTATA+TGG + chr8_1:45970360-45970379 None:intergenic 30.0%
!!! AATACTTTTTGGTTGTCTTC+AGG - chr8_1:45970460-45970479 Msa1196520:CDS 30.0%
TCTTTACTCATATGGTATTC+TGG - chr8_1:45970488-45970507 Msa1196520:CDS 30.0%
!! ATAATGAGTATTGAGCAGTA+AGG + chr8_1:45970655-45970674 None:intergenic 30.0%
! ATATTCAATAAAGGACTGGT+GGG + chr8_1:45970821-45970840 None:intergenic 30.0%
AATATTCAATAAAGGACTGG+TGG + chr8_1:45970822-45970841 None:intergenic 30.0%
GACAATATTCAATAAAGGAC+TGG + chr8_1:45970825-45970844 None:intergenic 30.0%
!! TTTTGTTGTCTCTTTCATTG+TGG - chr8_1:45970851-45970870 Msa1196520:intron 30.0%
ATTGTGGCAAAAAACTAATC+TGG - chr8_1:45970867-45970886 Msa1196520:intron 30.0%
AAATAGTGCACGAGTTATAT+AGG - chr8_1:45970898-45970917 Msa1196520:intron 30.0%
TTACAGACAAATGGTGTATA+TGG + chr8_1:45971130-45971149 None:intergenic 30.0%
TACAGCTCACATAAACTATT+AGG - chr8_1:45971177-45971196 Msa1196520:intron 30.0%
AAAATTCTTCGCCAAACAAA+TGG - chr8_1:45971280-45971299 Msa1196520:intron 30.0%
AAATTCTTCGCCAAACAAAT+GGG - chr8_1:45971281-45971300 Msa1196520:intron 30.0%
! GAGAAATTGGTAATTGATTC+CGG + chr8_1:45971363-45971382 None:intergenic 30.0%
!! TAAGAGTATCAATGAGCTTA+GGG + chr8_1:45971770-45971789 None:intergenic 30.0%
ATCAGGACATGTATATACAA+TGG - chr8_1:45972364-45972383 Msa1196520:intron 30.0%
TCAGGACATGTATATACAAT+GGG - chr8_1:45972365-45972384 Msa1196520:intron 30.0%
! TTTTATCTTCAACACGTGTA+GGG + chr8_1:45972439-45972458 None:intergenic 30.0%
! ATTTTATCTTCAACACGTGT+AGG + chr8_1:45972440-45972459 None:intergenic 30.0%
TTTAAAAACTCGACAAGTGT+GGG + chr8_1:45972599-45972618 None:intergenic 30.0%
! TGTTGTTTGCCTTCATAAAT+GGG - chr8_1:45972664-45972683 Msa1196520:intron 30.0%
!!! CGTTTTCTTCTGAAGTTAAA+TGG + chr8_1:45972731-45972750 None:intergenic 30.0%
AATAACAGTCATCACAAACA+CGG + chr8_1:45972850-45972869 None:intergenic 30.0%
CTATTAAGACTTTCTTCGTT+TGG - chr8_1:45972968-45972987 Msa1196520:intron 30.0%
! TGTAGTTTTCCATTCAAAAC+TGG + chr8_1:45973058-45973077 None:intergenic 30.0%
! GTTGTTGTTCAAATGGGTAT+TGG - chr8_1:45968339-45968358 Msa1196520:CDS 35.0%
GTATTGGGTCTATTTACATG+AGG - chr8_1:45968355-45968374 Msa1196520:CDS 35.0%
! ATTCTCTTTTTACCTGCGTT+TGG - chr8_1:45968509-45968528 Msa1196520:CDS 35.0%
TAAGTTGTTTATCCAAACGC+AGG + chr8_1:45968524-45968543 None:intergenic 35.0%
CAACTTAGATCGTGTAGATT+TGG - chr8_1:45968537-45968556 Msa1196520:CDS 35.0%
! ATCGTGTAGATTTGGTAGTA+AGG - chr8_1:45968545-45968564 Msa1196520:CDS 35.0%
TTCTATCGTTAACCATGACT+CGG + chr8_1:45968675-45968694 None:intergenic 35.0%
AAATTGTTACTGAGTAGGGT+CGG + chr8_1:45968725-45968744 None:intergenic 35.0%
AAGCTATCTTGGAGACTTTA+TGG - chr8_1:45968863-45968882 Msa1196520:CDS 35.0%
AAACACTTGTGAGTCTGTTT+GGG + chr8_1:45968947-45968966 None:intergenic 35.0%
TAAACACTTGTGAGTCTGTT+TGG + chr8_1:45968948-45968967 None:intergenic 35.0%
! ACTTATTTGAGTTTACCTGC+AGG + chr8_1:45968973-45968992 None:intergenic 35.0%
CTCTTAATTAAGGGTCTGTT+TGG + chr8_1:45969000-45969019 None:intergenic 35.0%
TATAAAACCGCAAAGCATGA+GGG + chr8_1:45969483-45969502 None:intergenic 35.0%
GAGCTGTAATTGCCTATAAA+GGG + chr8_1:45969547-45969566 None:intergenic 35.0%
AGAGCTGTAATTGCCTATAA+AGG + chr8_1:45969548-45969567 None:intergenic 35.0%
GCAATTACAGCTCTTAAGAA+AGG - chr8_1:45969554-45969573 Msa1196520:CDS 35.0%
CTTTCCAATGTAAGTTTCTG+TGG - chr8_1:45969632-45969651 Msa1196520:CDS 35.0%
AACACCACAGAAACTTACAT+TGG + chr8_1:45969639-45969658 None:intergenic 35.0%
TTTGCATGCCTTTGGTTATT+TGG + chr8_1:45970225-45970244 None:intergenic 35.0%
! AGCATAATTTTGCATGCCTT+TGG + chr8_1:45970233-45970252 None:intergenic 35.0%
AGGCATGCAAAATTATGCTT+CGG - chr8_1:45970234-45970253 Msa1196520:CDS 35.0%
AGGATGAGTCTTTACTCATA+TGG - chr8_1:45970480-45970499 Msa1196520:CDS 35.0%
ACTGTTTCAAAGATCATTCC+TGG - chr8_1:45970539-45970558 Msa1196520:CDS 35.0%
CTGTTTCAAAGATCATTCCT+GGG - chr8_1:45970540-45970559 Msa1196520:CDS 35.0%
! CAGTATTAGCCTGAAAATTG+TGG + chr8_1:45970596-45970615 None:intergenic 35.0%
! AATGACTGATACTCCTTTTC+AGG + chr8_1:45970726-45970745 None:intergenic 35.0%
TATATACAATGATCGGTCCT+TGG - chr8_1:45970752-45970771 Msa1196520:intron 35.0%
CATAGCAATTATGCAGAAAG+TGG + chr8_1:45970789-45970808 None:intergenic 35.0%
ACAAAGATGAAGCTGAAATC+TGG - chr8_1:45970990-45971009 Msa1196520:CDS 35.0%
! TATTCTGAAAGTCCAAAGTC+TGG - chr8_1:45971088-45971107 Msa1196520:intron 35.0%
! ATTTTTAAACAACAGGACCC+TGG - chr8_1:45971234-45971253 Msa1196520:intron 35.0%
AAAGCCTTTACCCATTTGTT+TGG + chr8_1:45971294-45971313 None:intergenic 35.0%
CTCAGAGGATATAGAGAAAT+TGG + chr8_1:45971376-45971395 None:intergenic 35.0%
!! GATGTTTTTATTTGGGGAGA+AGG - chr8_1:45971513-45971532 Msa1196520:intron 35.0%
AAACCTATCTACTTCAGAGA+CGG - chr8_1:45971578-45971597 Msa1196520:intron 35.0%
!! ACTTTTGATTCCAATGCCTT+GGG + chr8_1:45971615-45971634 None:intergenic 35.0%
!! CTAAGAGTATCAATGAGCTT+AGG + chr8_1:45971771-45971790 None:intergenic 35.0%
AAGCTCATTGATACTCTTAG+TGG - chr8_1:45971771-45971790 Msa1196520:intron 35.0%
TGGATTCCTAAGAAAGTAAG+TGG - chr8_1:45971924-45971943 Msa1196520:CDS 35.0%
AATGCACCACTTACTTTCTT+AGG + chr8_1:45971933-45971952 None:intergenic 35.0%
TAAGAAAGTAAGTGGTGCAT+TGG - chr8_1:45971932-45971951 Msa1196520:CDS 35.0%
! CAGTTGTTTACATTTGGTGA+TGG - chr8_1:45972020-45972039 Msa1196520:intron 35.0%
!!! ACATTTGGTGATGGAACTTT+TGG - chr8_1:45972029-45972048 Msa1196520:intron 35.0%
ATAGCAGCTCAAATATTCCT+CGG - chr8_1:45972072-45972091 Msa1196520:intron 35.0%
! GGGAAGTAGAAACTTTGAAA+GGG - chr8_1:45972093-45972112 Msa1196520:intron 35.0%
TGAGGTGATAAATGAATCTG+TGG - chr8_1:45972166-45972185 Msa1196520:intron 35.0%
TCTTATCAACATCTCCTAGT+TGG + chr8_1:45972250-45972269 None:intergenic 35.0%
TTCATAGAAGATATTGCCTG+TGG - chr8_1:45972470-45972489 Msa1196520:intron 35.0%
AAGGGTTTAAATGGGCAATT+AGG - chr8_1:45972545-45972564 Msa1196520:intron 35.0%
TTAAATGGGCAATTAGGTCA+TGG - chr8_1:45972551-45972570 Msa1196520:intron 35.0%
! CTTTAAAAACTCGACAAGTG+TGG + chr8_1:45972600-45972619 None:intergenic 35.0%
! CACACTTGTCGAGTTTTTAA+AGG - chr8_1:45972598-45972617 Msa1196520:intron 35.0%
!!! CAAGTGAAGAGTGTTTTTTG+TGG - chr8_1:45972626-45972645 Msa1196520:intron 35.0%
! CTGTTGTTTGCCTTCATAAA+TGG - chr8_1:45972663-45972682 Msa1196520:intron 35.0%
CGTCATAATTGTTACAACTG+TGG - chr8_1:45972749-45972768 Msa1196520:intron 35.0%
ATATAGCTATCGTGTGATTC+AGG + chr8_1:45973031-45973050 None:intergenic 35.0%
AAATCATCAAACTCTCCTTC+CGG - chr8_1:45973094-45973113 Msa1196520:intron 35.0%
AGACTGCATAATATCTTCAC+AGG + chr8_1:45973215-45973234 None:intergenic 35.0%
TGAATGGCTGATCTTCAGAA+AGG - chr8_1:45968395-45968414 Msa1196520:CDS 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - chr8_1:45968561-45968580 Msa1196520:CDS 40.0%
GAGGATAGTCAAATCACTAG+AGG - chr8_1:45968583-45968602 Msa1196520:CDS 40.0%
ATACCACTTCTTCTTGAAGC+TGG - chr8_1:45969444-45969463 Msa1196520:CDS 40.0%
CTATAAAACCGCAAAGCATG+AGG + chr8_1:45969484-45969503 None:intergenic 40.0%
!! TTCTAAAGTATGGGCGAAGA+GGG - chr8_1:45969585-45969604 Msa1196520:CDS 40.0%
AGCTTAAAAGGGCAGAACTT+CGG + chr8_1:45969614-45969633 None:intergenic 40.0%
TGACTTTGACGTCGAATTCA+AGG + chr8_1:45969914-45969933 None:intergenic 40.0%
GAATTCGACGTCAAAGTCAT+TGG - chr8_1:45969915-45969934 Msa1196520:CDS 40.0%
CTTAGGTGCCAAATAACCAA+AGG - chr8_1:45970214-45970233 Msa1196520:CDS 40.0%
ATCCACTTGAACGAGAAACA+TGG - chr8_1:45970414-45970433 Msa1196520:CDS 40.0%
TCCACTTGAACGAGAAACAT+GGG - chr8_1:45970415-45970434 Msa1196520:CDS 40.0%
ACTCATATGGTATTCTGGCA+AGG - chr8_1:45970493-45970512 Msa1196520:CDS 40.0%
! ATTAGCCTGAAAATTGTGGC+TGG + chr8_1:45970592-45970611 None:intergenic 40.0%
GTAAGGCAATGTGGGAAAAA+AGG + chr8_1:45970638-45970657 None:intergenic 40.0%
ATTGAGCAGTAAGGCAATGT+GGG + chr8_1:45970646-45970665 None:intergenic 40.0%
TATTGAGCAGTAAGGCAATG+TGG + chr8_1:45970647-45970666 None:intergenic 40.0%
TAATCCAGGCAACATTTCAG+CGG - chr8_1:45970691-45970710 Msa1196520:intron 40.0%
!!! ACTGATACTCCTTTTCAGGT+CGG + chr8_1:45970722-45970741 None:intergenic 40.0%
!! AAAGGACTGGTGGGTTTAAT+TGG + chr8_1:45970812-45970831 None:intergenic 40.0%
ATCTGTGCATAGATTAGCAG+TGG + chr8_1:45970962-45970981 None:intergenic 40.0%
AATCTATGCACAGATCTGCA+AGG - chr8_1:45970967-45970986 Msa1196520:intron 40.0%
GACAAATGGTGTATATGGAG+TGG + chr8_1:45971125-45971144 None:intergenic 40.0%
TTCGCCAAACAAATGGGTAA+AGG - chr8_1:45971287-45971306 Msa1196520:intron 40.0%
TTCATTACAAGAACCCTGAC+TGG + chr8_1:45971475-45971494 None:intergenic 40.0%
! GGTACCAATGATGGAATTCT+TGG - chr8_1:45971534-45971553 Msa1196520:intron 40.0%
! ACCAATGATGGAATTCTTGG+CGG - chr8_1:45971537-45971556 Msa1196520:intron 40.0%
!! CACTTTTGATTCCAATGCCT+TGG + chr8_1:45971616-45971635 None:intergenic 40.0%
!! CAAGGCATTGGAATCAAAAG+TGG - chr8_1:45971614-45971633 Msa1196520:intron 40.0%
GTTCTCGATGTTCAGAGTAT+TGG - chr8_1:45971636-45971655 Msa1196520:intron 40.0%
!! GATGTTCAGAGTATTGGATG+TGG - chr8_1:45971642-45971661 Msa1196520:intron 40.0%
!!! GCTGTTTTAGTTACCAAGCA+GGG - chr8_1:45971675-45971694 Msa1196520:intron 40.0%
AACGTTGAGTTAGTAGCATG+TGG - chr8_1:45971798-45971817 Msa1196520:intron 40.0%
! ACTTGCGCTGTTACTTATTC+TGG - chr8_1:45971831-45971850 Msa1196520:intron 40.0%
! CTTGCGCTGTTACTTATTCT+GGG - chr8_1:45971832-45971851 Msa1196520:intron 40.0%
! TTGCGCTGTTACTTATTCTG+GGG - chr8_1:45971833-45971852 Msa1196520:intron 40.0%
! ATTCTGGGGATCTTTATACC+TGG - chr8_1:45971847-45971866 Msa1196520:intron 40.0%
! TTCTGGGGATCTTTATACCT+GGG - chr8_1:45971848-45971867 Msa1196520:intron 40.0%
ATGGGAATGAAGTTAGTCAC+TGG - chr8_1:45971904-45971923 Msa1196520:intron 40.0%
AAAGTAAGTGGTGCATTGGA+AGG - chr8_1:45971936-45971955 Msa1196520:CDS 40.0%
ACAGCTATTGTTACATCAGC+TGG - chr8_1:45971996-45972015 Msa1196520:intron 40.0%
GCTGGACAGTTGTTTACATT+TGG - chr8_1:45972014-45972033 Msa1196520:intron 40.0%
TAGCAGCTCAAATATTCCTC+GGG - chr8_1:45972073-45972092 Msa1196520:intron 40.0%
TTCAAAGTTTCTACTTCCCG+AGG + chr8_1:45972092-45972111 None:intergenic 40.0%
CGGGAAGTAGAAACTTTGAA+AGG - chr8_1:45972092-45972111 Msa1196520:intron 40.0%
TCTTCTAGTCAGTCATCTAG+TGG - chr8_1:45972191-45972210 Msa1196520:intron 40.0%
AACATTTGTCGTGTAGCTTG+TGG - chr8_1:45972314-45972333 Msa1196520:intron 40.0%
TCAATGCAACTGTAAGACTG+TGG + chr8_1:45972340-45972359 None:intergenic 40.0%
! ACAGTTGCATTGACAACATC+AGG - chr8_1:45972347-45972366 Msa1196520:intron 40.0%
! ACAATGGGAAGTACAGCTTA+CGG - chr8_1:45972380-45972399 Msa1196520:intron 40.0%
TGCAACATGATATGAACCAC+AGG + chr8_1:45972489-45972508 None:intergenic 40.0%
ACATGGGGAAAGGGTTTAAA+TGG - chr8_1:45972536-45972555 Msa1196520:intron 40.0%
CATGGGGAAAGGGTTTAAAT+GGG - chr8_1:45972537-45972556 Msa1196520:intron 40.0%
CAATTAGGTCATGGTGACAA+TGG - chr8_1:45972560-45972579 Msa1196520:intron 40.0%
TACTCGGTACCCATTTATGA+AGG + chr8_1:45972676-45972695 None:intergenic 40.0%
! CTTGTTGGTATTTGGAGCAA+GGG + chr8_1:45972822-45972841 None:intergenic 40.0%
! TCTTGTTGGTATTTGGAGCA+AGG + chr8_1:45972823-45972842 None:intergenic 40.0%
! CGGTATGTCTTGTTGGTATT+TGG + chr8_1:45972830-45972849 None:intergenic 40.0%
ACAAACACGGTATGTCTTGT+TGG + chr8_1:45972837-45972856 None:intergenic 40.0%
!! TGTCGGTTTGCAAGATAGTA+AGG - chr8_1:45972925-45972944 Msa1196520:intron 40.0%
!! TAGTGTTCCCTGTGTTTTAG+CGG + chr8_1:45972951-45972970 None:intergenic 40.0%
TGAATGGAAAACTACAGCTG+CGG - chr8_1:45973062-45973081 Msa1196520:intron 40.0%
AATCATCAAACTCTCCTTCC+GGG - chr8_1:45973095-45973114 Msa1196520:intron 40.0%
TGACTTTGATGAAACTGGAG+AGG + chr8_1:45973179-45973198 None:intergenic 40.0%
GGACTTGACTTTGATGAAAC+TGG + chr8_1:45973184-45973203 None:intergenic 40.0%
ATATCTTCACAGGATTGTCG+TGG + chr8_1:45973205-45973224 None:intergenic 40.0%
ATCTTCAGAAAGGCGACAGT+AGG - chr8_1:45968405-45968424 Msa1196520:CDS 45.0%
TCTTCAGAAAGGCGACAGTA+GGG - chr8_1:45968406-45968425 Msa1196520:CDS 45.0%
AAGGAGAGTAGATCAGATGG+AGG - chr8_1:45968564-45968583 Msa1196520:CDS 45.0%
AGTCAAATCACTAGAGGCAG+AGG - chr8_1:45968589-45968608 Msa1196520:CDS 45.0%
TAATGAGATGGACCGAGTCA+TGG - chr8_1:45968660-45968679 Msa1196520:CDS 45.0%
TCACAAGTGTTTATGCCTGC+AGG - chr8_1:45968955-45968974 Msa1196520:CDS 45.0%
CTTCCAGCTTCAAGAAGAAG+TGG + chr8_1:45969450-45969469 None:intergenic 45.0%
!! CTTCTAAAGTATGGGCGAAG+AGG - chr8_1:45969584-45969603 Msa1196520:CDS 45.0%
! GAACTCCAGCCACAATTTTC+AGG - chr8_1:45970584-45970603 Msa1196520:intron 45.0%
!!! TGATACTCCTTTTCAGGTCG+GGG + chr8_1:45970720-45970739 None:intergenic 45.0%
!!! CTGATACTCCTTTTCAGGTC+GGG + chr8_1:45970721-45970740 None:intergenic 45.0%
CAATGATCGGTCCTTGGATT+TGG - chr8_1:45970758-45970777 Msa1196520:intron 45.0%
! GAAGCTGAAATCTGGTTTGC+TGG - chr8_1:45970998-45971017 Msa1196520:CDS 45.0%
CTGAAAGCGATAGTTACCAG+AGG - chr8_1:45971022-45971041 Msa1196520:CDS 45.0%
GATCTTCTTGTGCCAGACTT+TGG + chr8_1:45971103-45971122 None:intergenic 45.0%
TACCAATAGCTCCAGTCAAC+CGG - chr8_1:45971341-45971360 Msa1196520:intron 45.0%
! GGTAATTGATTCCGGTTGAC+TGG + chr8_1:45971355-45971374 None:intergenic 45.0%
TCGAGTGCTTGAGTTATCCA+CGG + chr8_1:45971400-45971419 None:intergenic 45.0%
CACTCGAAATTCTGCATCTG+AGG - chr8_1:45971413-45971432 Msa1196520:intron 45.0%
ACTGGATGAACTTACAGCAC+TGG + chr8_1:45971457-45971476 None:intergenic 45.0%
TGCTGTAAGTTCATCCAGTC+AGG - chr8_1:45971458-45971477 Msa1196520:intron 45.0%
GCTGTAAGTTCATCCAGTCA+GGG - chr8_1:45971459-45971478 Msa1196520:intron 45.0%
ACCGCCAAGAATTCCATCAT+TGG + chr8_1:45971541-45971560 None:intergenic 45.0%
! AATGATGGAATTCTTGGCGG+TGG - chr8_1:45971540-45971559 Msa1196520:intron 45.0%
!! CATCCGTCTCTGAAGTAGAT+AGG + chr8_1:45971584-45971603 None:intergenic 45.0%
TTGATTCCAATGCCTTGGGA+AGG + chr8_1:45971611-45971630 None:intergenic 45.0%
!!! CGCTGTTTTAGTTACCAAGC+AGG - chr8_1:45971674-45971693 Msa1196520:intron 45.0%
GCTAAACATTTCTCCCTGCT+TGG + chr8_1:45971691-45971710 None:intergenic 45.0%
AGCAGGGAGAAATGTTTAGC+TGG - chr8_1:45971691-45971710 Msa1196520:intron 45.0%
GCAGGGAGAAATGTTTAGCT+GGG - chr8_1:45971692-45971711 Msa1196520:intron 45.0%
CAGGGAGAAATGTTTAGCTG+GGG - chr8_1:45971693-45971712 Msa1196520:intron 45.0%
TCTGGGGATCTTTATACCTG+GGG - chr8_1:45971849-45971868 Msa1196520:intron 45.0%
GATCTTTATACCTGGGGTGA+TGG - chr8_1:45971855-45971874 Msa1196520:intron 45.0%
GTGATGGTACTCACAACTCT+GGG - chr8_1:45971871-45971890 Msa1196520:intron 45.0%
ACTCACAACTCTGGGTTACT+TGG - chr8_1:45971879-45971898 Msa1196520:intron 45.0%
CTCACAACTCTGGGTTACTT+GGG - chr8_1:45971880-45971899 Msa1196520:intron 45.0%
CGTGTATCATATGTGTCGTG+CGG - chr8_1:45971963-45971982 Msa1196520:CDS 45.0%
GTAACAATAGCTGTGTGCCA+AGG + chr8_1:45971990-45972009 None:intergenic 45.0%
!!! GATGGAACTTTTGGTGCCTT+AGG - chr8_1:45972038-45972057 Msa1196520:intron 45.0%
!!! ACTTTTGGTGCCTTAGGACA+TGG - chr8_1:45972044-45972063 Msa1196520:intron 45.0%
GCTATGATCTCCATGTCCTA+AGG + chr8_1:45972057-45972076 None:intergenic 45.0%
CTAGTCAGTCATCTAGTGGA+AGG - chr8_1:45972195-45972214 Msa1196520:intron 45.0%
GATGGAGATAAAGGCCAACT+AGG - chr8_1:45972233-45972252 Msa1196520:intron 45.0%
! ACACACACAGGAACTAGTCT+AGG + chr8_1:45972275-45972294 None:intergenic 45.0%
TCCTGTGTGTGTAACTGCAT+TGG - chr8_1:45972283-45972302 Msa1196520:intron 45.0%
AGTACAGCTTACGGACAACT+TGG - chr8_1:45972389-45972408 Msa1196520:intron 45.0%
CAAGGCAGAGGTTTACACAT+GGG - chr8_1:45972520-45972539 Msa1196520:intron 45.0%
AAGGCAGAGGTTTACACATG+GGG - chr8_1:45972521-45972540 Msa1196520:intron 45.0%
AGAGGTTTACACATGGGGAA+AGG - chr8_1:45972526-45972545 Msa1196520:intron 45.0%
GAGGTTTACACATGGGGAAA+GGG - chr8_1:45972527-45972546 Msa1196520:intron 45.0%
AGCTCTCATAGATCTCTTGC+TGG + chr8_1:45972798-45972817 None:intergenic 45.0%
TAGTAAGGCCGCTAAAACAC+AGG - chr8_1:45972940-45972959 Msa1196520:intron 45.0%
AGTAAGGCCGCTAAAACACA+GGG - chr8_1:45972941-45972960 Msa1196520:intron 45.0%
!! GTGATTCAGGAAGCTTTGAG+TGG + chr8_1:45973018-45973037 None:intergenic 45.0%
GAATGGAAAACTACAGCTGC+GGG - chr8_1:45973063-45973082 Msa1196520:intron 45.0%
ATCATCAAACTCTCCTTCCG+GGG - chr8_1:45973096-45973115 Msa1196520:intron 45.0%
TATTTCCTAGATTCCCCGGA+AGG + chr8_1:45973112-45973131 None:intergenic 45.0%
CTGGTATTTCCTAGATTCCC+CGG + chr8_1:45973116-45973135 None:intergenic 45.0%
GAGCAAGCTCAGAAATAGAC+TGG + chr8_1:45973135-45973154 None:intergenic 45.0%
GTTGACTGACAAGATACTCG+TGG + chr8_1:45973157-45973176 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTGAT+GGG - chr8_1:45968278-45968297 Msa1196520:CDS 5.0%
CTTCTTGAAGCTGGAAGCAG+AGG - chr8_1:45969453-45969472 Msa1196520:CDS 50.0%
AGGTCTTCCCTCATGCTTTG+CGG - chr8_1:45969473-45969492 Msa1196520:CDS 50.0%
GAAGTGGGAACACACATGAC+AGG + chr8_1:45969843-45969862 None:intergenic 50.0%
GCCCATGTTTCTCGTTCAAG+TGG + chr8_1:45970419-45970438 None:intergenic 50.0%
AAACTTACAGTTCGCTGCCC+AGG + chr8_1:45970560-45970579 None:intergenic 50.0%
GATACCGCTGAAATGTTGCC+TGG + chr8_1:45970698-45970717 None:intergenic 50.0%
AAGTGGACGCACCAAATCCA+AGG + chr8_1:45970772-45970791 None:intergenic 50.0%
CCACTTGCGATAGTTACCTC+TGG + chr8_1:45971041-45971060 None:intergenic 50.0%
CCAGAGGTAACTATCGCAAG+TGG - chr8_1:45971038-45971057 Msa1196520:CDS 50.0%
CAATTCCGTCGACATCTCCA+GGG + chr8_1:45971254-45971273 None:intergenic 50.0%
GGTTGACTGGAGCTATTGGT+AGG + chr8_1:45971342-45971361 None:intergenic 50.0%
TTCCGGTTGACTGGAGCTAT+TGG + chr8_1:45971346-45971365 None:intergenic 50.0%
CTCTATATCCTCTGAGTCCG+TGG - chr8_1:45971380-45971399 Msa1196520:intron 50.0%
TGAGTTATCCACGGACTCAG+AGG + chr8_1:45971391-45971410 None:intergenic 50.0%
!! TGGGGAGAAGGTACCAATGA+TGG - chr8_1:45971525-45971544 Msa1196520:intron 50.0%
TGCATTCCTTCCCAAGGCAT+TGG - chr8_1:45971602-45971621 Msa1196520:intron 50.0%
AGAAATGTTTAGCTGGGGCG+AGG - chr8_1:45971698-45971717 Msa1196520:intron 50.0%
! GGTGATGGTACTCACAACTC+TGG - chr8_1:45971870-45971889 Msa1196520:intron 50.0%
AACTCTGGGTTACTTGGGCA+TGG - chr8_1:45971885-45971904 Msa1196520:intron 50.0%
ACTCTGGGTTACTTGGGCAT+GGG - chr8_1:45971886-45971905 Msa1196520:intron 50.0%
TGAAAGGGTTGAGAGCAACC+AGG - chr8_1:45972108-45972127 Msa1196520:intron 50.0%
GAAAGGGTTGAGAGCAACCA+GGG - chr8_1:45972109-45972128 Msa1196520:intron 50.0%
AGAGCAACCAGGGTTTCATG+TGG - chr8_1:45972119-45972138 Msa1196520:intron 50.0%
CCAAACACCACATGAAACCC+TGG + chr8_1:45972129-45972148 None:intergenic 50.0%
CCAGGGTTTCATGTGGTGTT+TGG - chr8_1:45972126-45972145 Msa1196520:intron 50.0%
TAGTGGAAGGCTGTTCACCT+GGG - chr8_1:45972208-45972227 Msa1196520:intron 50.0%
GCCAATGCAGTTACACACAC+AGG + chr8_1:45972287-45972306 None:intergenic 50.0%
TTGGTTGTCCTGCAGCAAGT+GGG - chr8_1:45972408-45972427 Msa1196520:intron 50.0%
TGTTGCAGTCCTGACTTCCA+AGG - chr8_1:45972502-45972521 Msa1196520:intron 50.0%
AAACCTCTGCCTTGGAAGTC+AGG + chr8_1:45972514-45972533 None:intergenic 50.0%
CCATGTGTAAACCTCTGCCT+TGG + chr8_1:45972522-45972541 None:intergenic 50.0%
CCAAGGCAGAGGTTTACACA+TGG - chr8_1:45972519-45972538 Msa1196520:intron 50.0%
GTCATGGTGACAATGGTCAC+AGG - chr8_1:45972567-45972586 Msa1196520:intron 50.0%
TGGATTACGACAGCCTGAAC+AGG + chr8_1:45972711-45972730 None:intergenic 50.0%
ACACTTCTCGAGCTAGGACT+TGG + chr8_1:45972908-45972927 None:intergenic 50.0%
! AGTCCTAGCTCGAGAAGTGT+CGG - chr8_1:45972908-45972927 Msa1196520:intron 50.0%
AAACCGACACTTCTCGAGCT+AGG + chr8_1:45972914-45972933 None:intergenic 50.0%
CGACAGTAGGGATATCGAGC+AGG - chr8_1:45968418-45968437 Msa1196520:CDS 55.0%
ACTGAGTAGGGTCGGCTACA+TGG + chr8_1:45968717-45968736 None:intergenic 55.0%
GCAATTCCGTCGACATCTCC+AGG + chr8_1:45971255-45971274 None:intergenic 55.0%
GACGGATGCATTCCTTCCCA+AGG - chr8_1:45971596-45971615 Msa1196520:intron 55.0%
TCAGGAGGTAGGCTTGGACA+TGG - chr8_1:45971723-45971742 Msa1196520:intron 55.0%
GCTTGGACATGGTGCAGAAG+TGG - chr8_1:45971734-45971753 Msa1196520:intron 55.0%
GTTGTGAGTACCATCACCCC+AGG + chr8_1:45971868-45971887 None:intergenic 55.0%
CATATGTGTCGTGCGGACCT+TGG - chr8_1:45971970-45971989 Msa1196520:CDS 55.0%
GCACACTGCTGCAGTTGTTG+AGG - chr8_1:45972148-45972167 Msa1196520:intron 55.0%
CTAGTGGAAGGCTGTTCACC+TGG - chr8_1:45972207-45972226 Msa1196520:intron 55.0%
AGTGGAAGGCTGTTCACCTG+GGG - chr8_1:45972209-45972228 Msa1196520:intron 55.0%
ACCTGGGGGGATGGAGATAA+AGG - chr8_1:45972224-45972243 Msa1196520:intron 55.0%
CTTGGTTGTCCTGCAGCAAG+TGG - chr8_1:45972407-45972426 Msa1196520:intron 55.0%
TTGTCCTGCAGCAAGTGGGA+AGG - chr8_1:45972412-45972431 Msa1196520:intron 55.0%
AGTCCTGACTTCCAAGGCAG+AGG - chr8_1:45972508-45972527 Msa1196520:intron 55.0%
TCTCGAGCTAGGACTTGGCA+AGG + chr8_1:45972903-45972922 None:intergenic 55.0%
ACTCTCCTTCCGGGGAATCT+AGG - chr8_1:45973104-45973123 Msa1196520:intron 55.0%
GCGGTATCCCCGACCTGAAA+AGG - chr8_1:45970710-45970729 Msa1196520:intron 60.0%
CAGGACCCTGGAGATGTCGA+CGG - chr8_1:45971246-45971265 Msa1196520:intron 60.0%
TTTAGCTGGGGCGAGGAGTC+AGG - chr8_1:45971705-45971724 Msa1196520:intron 60.0%
GAGGAGTCAGGAGGTAGGCT+TGG - chr8_1:45971717-45971736 Msa1196520:intron 60.0%
GTGGAAGGCTGTTCACCTGG+GGG - chr8_1:45972210-45972229 Msa1196520:intron 60.0%
TGGAAGGCTGTTCACCTGGG+GGG - chr8_1:45972211-45972230 Msa1196520:intron 60.0%
GCCTTTATCTCCATCCCCCC+AGG + chr8_1:45972228-45972247 None:intergenic 60.0%
GGCGGTGGTCTGCGTAGAGT+TGG - chr8_1:45971555-45971574 Msa1196520:intron 65.0%
AGGCTGTTCACCTGGGGGGA+TGG - chr8_1:45972215-45972234 Msa1196520:intron 65.0%
! GGGACCTTCCCACTTGCTGC+AGG + chr8_1:45972419-45972438 None:intergenic 65.0%
AGCTGGGGCGAGGAGTCAGG+AGG - chr8_1:45971708-45971727 Msa1196520:intron 70.0%
GGGGCGAGGAGTCAGGAGGT+AGG - chr8_1:45971712-45971731 Msa1196520:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 45968206 45973348 45968206 ID=Msa1196520;Name=Msa1196520
chr8_1 mRNA 45968206 45973348 45968206 ID=Msa1196520-mRNA-1;Parent=Msa1196520;Name=Msa1196520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=192|1|0.83|1|1|1|6|0|853
chr8_1 exon 45968206 45970305 45968206 ID=Msa1196520-mRNA-1:exon:14634;Parent=Msa1196520-mRNA-1
chr8_1 exon 45970413 45970574 45970413 ID=Msa1196520-mRNA-1:exon:14633;Parent=Msa1196520-mRNA-1
chr8_1 exon 45970775 45970855 45970775 ID=Msa1196520-mRNA-1:exon:14632;Parent=Msa1196520-mRNA-1
chr8_1 exon 45970983 45971072 45970983 ID=Msa1196520-mRNA-1:exon:14631;Parent=Msa1196520-mRNA-1
chr8_1 exon 45971914 45972000 45971914 ID=Msa1196520-mRNA-1:exon:14630;Parent=Msa1196520-mRNA-1
chr8_1 exon 45973115 45973348 45973115 ID=Msa1196520-mRNA-1:exon:14629;Parent=Msa1196520-mRNA-1
chr8_1 five_prime_UTR 45973157 45973348 45973157 ID=Msa1196520-mRNA-1:five_prime_utr;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45973115 45973156 45973115 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45971914 45972000 45971914 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45970983 45971072 45970983 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45970775 45970855 45970775 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45970413 45970574 45970413 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
chr8_1 CDS 45968206 45970305 45968206 ID=Msa1196520-mRNA-1:cds;Parent=Msa1196520-mRNA-1
Gene Sequence

>Msa1196520

ATGGCTGATCTTCAGAAAGGCGACAGTAGGGATATCGAGCAGGCAATTACAGCTCTTAAGAAAGGTTCATATCTTCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCTTTTAAGCTTTCCAATGATGAGTCTTTACTCATATGGTATTCTGGCAAGGAAGAAAAAAAAGTTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCCCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAATGATCGGTCCTTGGATTTGATCTGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGCTGGTCTGAAAGCGATAGTTACCAGAGGTAACTATCGCAAGTGGCGATTTGAAACTAGAGCTGAAAGTCTGTATTCTGAAAGTCCAAAGTCTGGCACAAGAAGATCCACTCCATATACACCATTTGACCCTGGAGATGTCGACGGAATTGCTTTTCAAAATTCTTCGCCAAACAAATGGGTAAAGGCTTTCTCTGAAATTATTTCATACACTGCGCCTACCAATAGCTCCAGTCAACCGGAATCAATTACCAATTTCTCTATATCCTCTGAGTCCGTGGATAACTCAAGCACTCGAAATTCTGCATCTGAGGCAATTCGAGTTAGTCTATCCAGTGCTGTAAGTTCATCCAGTCAGGGTTCTTGTAATGAAGATTTTGATGCTTTAGGTGATGTTTTTATTTGGGGAGAAGGTACCAATGATGGAATTCTTGGCGGTGGTCTGCGTAGAGTTGGAAACCTATCTACTTCAGAGACGGATGCATTCCTTCCCAAGGCATTGGAATCAAAAGTGGTTCTCGATGTTCAGAGTATTGGATGTGGCTATAAACACGCTGTTTTAGTTACCAAGCAGGGAGAAATGTTTAGCTGGGGCGAGGAGTCAGGAGGTAGGCTTGGACATGGTGCAGAAGTGGACGTTTTTCACCCTAAGCTCATTGATACTCTTAGTGGCATGAACGTTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAACTCTGGGTTACTTGGGCATGGGAATGAAGTTAGTCACTGGATTCCTAAGAAAGTAAGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCGTGCGGACCTTGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAGATCATAGCAGCTCAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAGCAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGAATCTTCTAGTCAGTCATCTAGTGGAAGGCTGTTCACCTGGGGGGATGGAGATAAAGGCCAACTAGGAGATGTTGATAAGAAACCTAGACTAGTTCCTGTGTGTGTAACTGCATTGGCTGATGAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGTTGCATTGACAACATCAGGACATGTATATACAATGGGAAGTACAGCTTACGGACAACTTGGTTGTCCTGCAGCAAGTGGGAAGGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTAAATGGGCAATTAGGTCATGGTGACAATGGTCACAGGAATAAGCCCACACTTGTCGAGTTTTTAAAGGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGGTACCGAGTATTGATCATTCTGCCTGTTCAGGCTGTCGTAATCCATTTAACTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAACACATGCACCAGCAAGAGATCTATGAGAGCTTCCCTTGCTCCAAATACCAACAAGACATACCGTGTTTGTGATGACTGTTATTATAAACTTCAGAAAGCTGCTGAATCAGTAACCTTGCCAAGTCCTAGCTCGAGAAGTGTCGGTTTGCAAGATAGTAAGGCCGCTAAAACACAGGGAACACTATTAAGACTTTCTTCGTTTGGTTCTAATGTTCAATCTGAAAGCAGCCACTCAAAGCTTCCTGAATCACACGATAGCTATATTTTTCCAGTTTTGAATGGAAAACTACAGCTGCGGGTTGTTTCAAAATCATCAAACTCTCCTTCCGGGGAATCTAGGAAATACCAGTCTATTTCTGAGCTTGCTCCACGAGTATCTTGTCAGTCAACCTCTCCAGTTTCATCAAAGTCAAGTCCACGACAATCCTGTGAAGATATTATGCAGTCTGATTTAAAACACAGAAATGATATTCTAAGTCACGAAGTTATAAGTTTAAAAGCACAGGTAAGCTTGATCAAATTTATCTTATTTGTAATTTTATACACATACCCTTCTATATAA
Protein sequence

>Msa1196520

MADLQKGDSRDIEQAITALKKGSYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKKVKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKAIVTRGNYRKWRFETRAESLYSESPKSGTRRSTPYTPFDPGDVDGIAFQNSSPNKWVKAFSEIISYTAPTNSSSQPESITNFSISSESVDNSSTRNSASEAIRVSLSSAVSSSSQGSCNEDFDALGDVFIWGEGTNDGILGGGLRRVGNLSTSETDAFLPKALESKVVLDVQSIGCGYKHAVLVTKQGEMFSWGEESGGRLGHGAEVDVFHPKLIDTLSGMNVELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVSGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSSNIPREVETLKGLRATRVSCGVWHTAAVVEVINESVESSSQSSSGRLFTWGDGDKGQLGDVDKKPRLVPVCVTALADENICRVACGHSLTVALTTSGHVYTMGSTAYGQLGCPAASGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNGHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWVPSIDHSACSGCRNPFNFRRKRHNCYNCGLVFCNTCTSKRSMRASLAPNTNKTYRVCDDCYYKLQKAAESVTLPSPSSRSVGLQDSKAAKTQGTLLRLSSFGSNVQSESSHSKLPESHDSYIFPVLNGKLQLRVVSKSSNSPSGESRKYQSISELAPRVSCQSTSPVSSKSSPRQSCEDIMQSDLKHRNDILSHEVISLKAQVSLIKFILFVILYTYPSI*