AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197340 MtrunA17_Chr4g0071101 79.372 446 23 4 1 378 300 744 0.0 686
Msa1197340 MtrunA17_Chr1g0187011 44.836 426 166 4 29 386 367 791 2.53e-111 345
Msa1197340 MtrunA17_Chr6g0484411 39.524 420 180 5 12 363 347 760 8.42e-79 259
Msa1197340 MtrunA17_Chr6g0451621 38.684 380 190 5 27 363 317 696 1.62e-70 239
Msa1197340 MtrunA17_Chr8g0391141 36.269 386 184 6 17 344 222 603 1.42e-59 204
Msa1197340 MtrunA17_Chr2g0330811 35.392 421 194 8 29 376 332 747 2.22e-58 202
Msa1197340 MtrunA17_Chr8g0366051 96.429 84 3 0 138 221 14 97 1.63e-49 162
Msa1197340 MtrunA17_Chr8g0366041 81.308 107 13 2 1 100 115 221 3.18e-48 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197340 AT4G29750.1 48.590 461 164 7 8 395 360 820 6.28e-128 389
Msa1197340 AT4G29750.2 48.791 455 160 7 8 389 360 814 3.92e-127 386
Msa1197340 AT4G14510.1 40.700 457 173 6 29 388 373 828 7.32e-96 306
Msa1197340 AT3G23070.1 42.080 423 172 7 38 389 382 802 7.59e-96 306
Msa1197340 AT3G18390.1 38.795 415 180 5 17 363 384 792 9.32e-79 259
Msa1197340 AT3G01370.1 37.681 414 182 9 29 375 328 732 1.58e-66 228
Msa1197340 AT5G16180.1 33.738 412 196 7 29 368 311 717 1.81e-56 197
Msa1197340 AT5G16180.2 50.000 116 52 1 29 138 311 426 1.89e-26 111

Find 108 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCGTGACAACAAGCTTT+TGG 0.215837 8_1:-47627002 None:intergenic
CACGATAAATAATTATTATA+TGG 0.271438 8_1:-47626946 None:intergenic
TTCCCAACTTCTTGTTTACT+TGG 0.294491 8_1:-47626338 None:intergenic
CTTTCTCTTCCTCGTCTTGT+TGG 0.296198 8_1:-47626202 None:intergenic
ATGAAGCCATACTTACTTCT+AGG 0.301568 8_1:+47626660 Msa1197340:CDS
TAAGCATATTGCGATATCTT+TGG 0.302210 8_1:+47626874 Msa1197340:CDS
ACACCATATATCAGATTTAC+AGG 0.309479 8_1:+47627152 Msa1197340:CDS
CAATTACCCGCTGTTGTTCC+AGG 0.315816 8_1:+47623090 Msa1197340:CDS
ATATATGTAAATATTTATTT+CGG 0.328361 8_1:+47627825 Msa1197340:three_prime_UTR
CATGACAGTCATTTCCTTGT+TGG 0.330729 8_1:-47623163 None:intergenic
CAGATCTTTGTTTAGGAAGA+TGG 0.333761 8_1:+47626629 Msa1197340:CDS
AGCAGACCTTCCAACTGATT+TGG 0.336227 8_1:+47626587 Msa1197340:CDS
ATGAAGACAGATCTTTGTTT+AGG 0.339314 8_1:+47626622 Msa1197340:CDS
TCTCCTGTAAATCTGATATA+TGG 0.341489 8_1:-47627155 None:intergenic
CAACTTCTTGTTTACTTGGT+TGG 0.351696 8_1:-47626334 None:intergenic
AAATCAGTTGGAAGGTCTGC+TGG 0.363738 8_1:-47626585 None:intergenic
CATCCTATCATTAGATGTAT+AGG 0.369558 8_1:-47623404 None:intergenic
TCTCAAATGTCGTTACTTGC+TGG 0.369690 8_1:+47626269 Msa1197340:CDS
TGGGTCCGCGCTTCAAAGAT+TGG 0.371657 8_1:+47623034 Msa1197340:CDS
TAGGGCAGCAACTGCCAATT+GGG 0.376038 8_1:+47626307 Msa1197340:CDS
TTCTTACCTAGAAGTAAGTA+TGG 0.393391 8_1:-47626666 None:intergenic
TTTCCTATACATCTAATGAT+AGG 0.413642 8_1:+47623401 Msa1197340:CDS
TTTCGGTATAAGAATGATGA+AGG 0.419967 8_1:+47627842 Msa1197340:three_prime_UTR
ACTTGGTTGGTGTCCCCAAT+TGG 0.422589 8_1:-47626321 None:intergenic
ATATCGCAATATGCTTAACT+TGG 0.431744 8_1:-47626868 None:intergenic
CTAGGGCAGCAACTGCCAAT+TGG 0.434365 8_1:+47626306 Msa1197340:CDS
GAAGGATTTAGCTAAAATAC+AGG 0.450289 8_1:+47626551 Msa1197340:CDS
CAACCAAGTAAACAAGAAGT+TGG 0.453475 8_1:+47626335 Msa1197340:CDS
TATGAGTGAAGAAGAATCAA+TGG 0.453532 8_1:+47622978 Msa1197340:CDS
CACTCAGACTTCTTCCGTAT+GGG 0.458328 8_1:+47623124 Msa1197340:intron
TATAGGCAAAAGCAAGGTTA+AGG 0.458836 8_1:+47626520 Msa1197340:intron
ATTTCACAGGTTACATCACT+TGG 0.465515 8_1:-47627797 None:intergenic
AAGCTTGTTGTCACGAAGAC+AGG 0.466888 8_1:+47627006 Msa1197340:CDS
AATAATTATTATATGGCCCT+TGG 0.473196 8_1:-47626939 None:intergenic
TGGAACCCTTGCTGAGACTA+GGG 0.474177 8_1:+47626289 Msa1197340:CDS
CTATTTGACTTGAGCATCAT+GGG 0.476463 8_1:+47627640 Msa1197340:three_prime_UTR
GCTATTTGACTTGAGCATCA+TGG 0.476957 8_1:+47627639 Msa1197340:three_prime_UTR
AGATCTTTGTTTAGGAAGAT+GGG 0.477491 8_1:+47626630 Msa1197340:CDS
CCAGTGTCGAGTACAGAATC+TGG 0.477521 8_1:-47627330 None:intergenic
CTGGAACCCTTGCTGAGACT+AGG 0.478799 8_1:+47626288 Msa1197340:CDS
AGACTCTGCAGAGTATTTGA+AGG 0.479473 8_1:+47622954 Msa1197340:CDS
AAATTGCAAGCACCTGGTAT+TGG 0.484579 8_1:-47627410 None:intergenic
TCTCGATTAAAAGATTCAAC+AGG 0.488740 8_1:-47622934 None:intergenic
ACGGCGCCGCACTTTGCCCT+TGG 0.488842 8_1:+47623204 Msa1197340:CDS
GGTAATTGATCAGCATCAAC+AGG 0.493654 8_1:-47623075 None:intergenic
TGATCAGCATCAACAGGTAA+AGG 0.496292 8_1:-47623069 None:intergenic
ACTGTGAAGATAAACAATAA+TGG 0.503171 8_1:+47627665 Msa1197340:three_prime_UTR
AACCAAGTAAACAAGAAGTT+GGG 0.504260 8_1:+47626336 Msa1197340:CDS
GTTAATGTCTCCAAATCAGT+TGG 0.506886 8_1:-47626597 None:intergenic
GACCCAACTCATCTAACAAA+AGG 0.510309 8_1:-47623017 None:intergenic
CATATAATAATTATTTATCG+TGG 0.512686 8_1:+47626947 Msa1197340:CDS
ACATATATTAACCATTTCAC+AGG 0.517083 8_1:-47627810 None:intergenic
GGAAGAAATAGAGAACTTCA+AGG 0.517965 8_1:+47623310 Msa1197340:intron
TTTCACAGGTTACATCACTT+GGG 0.518906 8_1:-47627796 None:intergenic
TCACTCAGACTTCTTCCGTA+TGG 0.526758 8_1:+47623123 Msa1197340:intron
AAGTGATGTAACCTGTGAAA+TGG 0.530804 8_1:+47627799 Msa1197340:three_prime_UTR
TTATACCCTGGAACAACAGC+GGG 0.534729 8_1:-47623096 None:intergenic
CTATACATCTAATGATAGGA+TGG 0.535528 8_1:+47623405 Msa1197340:CDS
AAACAAGGTTTCACCCCATA+CGG 0.539368 8_1:-47623138 None:intergenic
GTTCCATGTGACACATCAAA+AGG 0.549282 8_1:-47627720 None:intergenic
CCGCGCTTCAAAGATTGGAC+AGG 0.551893 8_1:+47623039 Msa1197340:CDS
TTCACAGGTTACATCACTTG+GGG 0.554569 8_1:-47627795 None:intergenic
CTTTGGAAGCTGAGAGTGGT+GGG 0.555129 8_1:+47626891 Msa1197340:CDS
TTTAGTAAATTGCAAGCACC+TGG 0.558197 8_1:-47627416 None:intergenic
TTCCTCGTCTTGTTGGAGAA+CGG 0.558618 8_1:-47626195 None:intergenic
AAGCACCTGGTATTGGTCTA+CGG 0.559721 8_1:-47627403 None:intergenic
GTTGTCACGAAGACAGGCAT+TGG 0.566651 8_1:+47627012 Msa1197340:CDS
AATGATAAGAGAATCTACCT+TGG 0.566847 8_1:+47626361 Msa1197340:CDS
ATATAATAATTATTTATCGT+GGG 0.568217 8_1:+47626948 Msa1197340:CDS
TCTTTGGAAGCTGAGAGTGG+TGG 0.568769 8_1:+47626890 Msa1197340:CDS
AATTACCCGCTGTTGTTCCA+GGG 0.571119 8_1:+47623091 Msa1197340:CDS
TGCTGCCCTAGTCTCAGCAA+GGG 0.571168 8_1:-47626294 None:intergenic
TTGCTGCCCTAGTCTCAGCA+AGG 0.572524 8_1:-47626295 None:intergenic
AATCAGTTGGAAGGTCTGCT+GGG 0.575969 8_1:-47626584 None:intergenic
CCAGATTCTGTACTCGACAC+TGG 0.576638 8_1:+47627330 Msa1197340:CDS
ATCTGTAGACAAGGATACCA+AGG 0.577769 8_1:+47626922 Msa1197340:CDS
TATCGCAATATGCTTAACTT+GGG 0.578620 8_1:-47626867 None:intergenic
ATGTCTCCAAATCAGTTGGA+AGG 0.588053 8_1:-47626593 None:intergenic
AAGGTTAAGGAAGTCTGAGA+AGG 0.588795 8_1:+47626533 Msa1197340:CDS
TGGGTCTCATAACCTGTGGA+CGG 0.596006 8_1:-47626982 None:intergenic
TAGGATGGCTGAAGAACTCA+AGG 0.601557 8_1:+47623420 Msa1197340:CDS
TAAAGAAGCTAGTCTATCCA+AGG 0.601606 8_1:-47626378 None:intergenic
CTAGAGCTATAGTAAAGCTG+TGG 0.601734 8_1:+47623338 Msa1197340:CDS
TAGAGCTATAGTAAAGCTGT+GGG 0.602614 8_1:+47623339 Msa1197340:CDS
ATTTCCTTGTTGGATAAACA+AGG 0.603660 8_1:-47623153 None:intergenic
ACTCAGACTTCTTCCGTATG+GGG 0.604233 8_1:+47623125 Msa1197340:intron
TATGATTATAGGCAAAAGCA+AGG 0.604886 8_1:+47626514 Msa1197340:intron
ATGTGACACATCAAAAGGCA+TGG 0.616042 8_1:-47627715 None:intergenic
CATCAACAGGTAAAGGCTCA+CGG 0.617823 8_1:-47623062 None:intergenic
AGGAAATGACTGTCATGCGT+AGG 0.623211 8_1:+47623169 Msa1197340:CDS
GTAAGTGTGAAAGAAATGGT+TGG 0.627154 8_1:+47622910 None:intergenic
TGCATACCAAGGGCAAAGTG+CGG 0.628833 8_1:-47623210 None:intergenic
AGATTTCTATCCAATGTCGT+AGG 0.634292 8_1:+47627767 Msa1197340:three_prime_UTR
GCGTAGGATTGCTAGAAGAA+CGG 0.641061 8_1:+47623185 Msa1197340:CDS
AGTCATCATGAGAAGAAACA+TGG 0.641416 8_1:-47627360 None:intergenic
AACCGTTCTCCAACAAGACG+AGG 0.648727 8_1:+47626193 Msa1197340:CDS
GAAGAACTACTTCCGTCCAC+AGG 0.649230 8_1:+47626970 Msa1197340:CDS
TTTGGAAGCTGAGAGTGGTG+GGG 0.660912 8_1:+47626892 Msa1197340:CDS
AGGGCAGCAACTGCCAATTG+GGG 0.661841 8_1:+47626308 Msa1197340:CDS
GAAACCTTGTTTATCCAACA+AGG 0.665865 8_1:+47623149 Msa1197340:CDS
GGTGCTGATATCTGTAGACA+AGG 0.666036 8_1:+47626913 Msa1197340:CDS
TCACAGGTTACATCACTTGG+GGG 0.676221 8_1:-47627794 None:intergenic
CCTGTCCAATCTTTGAAGCG+CGG 0.681196 8_1:-47623039 None:intergenic
TTTATACCCTGGAACAACAG+CGG 0.682655 8_1:-47623097 None:intergenic
TATTGAGCTTCAAAGACGAG+AGG 0.684121 8_1:+47627042 Msa1197340:CDS
TCTGTAGACAAGGATACCAA+GGG 0.692088 8_1:+47626923 Msa1197340:CDS
ATATCTTTGGAAGCTGAGAG+TGG 0.692298 8_1:+47626887 Msa1197340:CDS
AAGGATTTAGCTAAAATACA+GGG 0.697797 8_1:+47626552 Msa1197340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAATTATTTATCGT+GGG + chr8_1:47626948-47626967 Msa1197340:CDS 10.0%
!!! TTAGTCTTATGATATAATAT+TGG - chr8_1:47624483-47624502 None:intergenic 15.0%
!!! AATCAAACAAAATTTTTCAT+GGG - chr8_1:47625031-47625050 None:intergenic 15.0%
!!! TAATCAAACAAAATTTTTCA+TGG - chr8_1:47625032-47625051 None:intergenic 15.0%
!! TTTATAAAGTTAGATAGATA+TGG - chr8_1:47626486-47626505 None:intergenic 15.0%
!! CACGATAAATAATTATTATA+TGG - chr8_1:47626949-47626968 None:intergenic 15.0%
!! CATATAATAATTATTTATCG+TGG + chr8_1:47626947-47626966 Msa1197340:CDS 15.0%
!! ATATTGCTACTAAATATTAT+TGG - chr8_1:47627461-47627480 None:intergenic 15.0%
!!! GTAAAGAATAGTAAATCTTT+TGG - chr8_1:47623277-47623296 None:intergenic 20.0%
!! AAAGATTTACTATTCTTTAC+TGG + chr8_1:47623277-47623296 Msa1197340:intron 20.0%
!!! AGAATTTTATCATGCTTAAA+AGG + chr8_1:47623499-47623518 Msa1197340:intron 20.0%
!!! GATAGTTTTTGAATGATTTT+GGG - chr8_1:47624040-47624059 None:intergenic 20.0%
!!! AGATAGTTTTTGAATGATTT+TGG - chr8_1:47624041-47624060 None:intergenic 20.0%
!!! TGTCAGTTATGTTTAATTTT+AGG - chr8_1:47624099-47624118 None:intergenic 20.0%
!! ATACTTAGGTTTATATGTTA+TGG - chr8_1:47624146-47624165 None:intergenic 20.0%
!!! TTATTAACTTTTTATGTCAG+TGG - chr8_1:47624239-47624258 None:intergenic 20.0%
!! TTCTATATGTAGAAAGAAAT+AGG + chr8_1:47624336-47624355 Msa1197340:intron 20.0%
!! TCTATATGTAGAAAGAAATA+GGG + chr8_1:47624337-47624356 Msa1197340:intron 20.0%
!!! TTTTCTATTGTAACATTATC+AGG + chr8_1:47624719-47624738 Msa1197340:intron 20.0%
!! TTTCTATTGTAACATTATCA+GGG + chr8_1:47624720-47624739 Msa1197340:intron 20.0%
!!! ATAATGTGATTTTATACAAG+CGG - chr8_1:47624856-47624875 None:intergenic 20.0%
!! CTTGTATAAAATCACATTAT+AGG + chr8_1:47624856-47624875 Msa1197340:intron 20.0%
!! AAAAAAAGTCAGAACAATAT+GGG - chr8_1:47624994-47625013 None:intergenic 20.0%
!! TAAAAAAAGTCAGAACAATA+TGG - chr8_1:47624995-47625014 None:intergenic 20.0%
!!! TGACTTTTTTTATTGAGTTT+TGG + chr8_1:47625003-47625022 Msa1197340:intron 20.0%
!!! GACTTTTTTTATTGAGTTTT+GGG + chr8_1:47625004-47625023 Msa1197340:intron 20.0%
!! ATGATAAATTATGAACAAGA+AGG - chr8_1:47625186-47625205 None:intergenic 20.0%
!! TCTTTGCTTGATTAAAATAA+AGG - chr8_1:47625296-47625315 None:intergenic 20.0%
!! AACAAAGGTAAAATAAAATG+TGG + chr8_1:47625403-47625422 Msa1197340:intron 20.0%
!!! TAATTTTTCACACATTCATA+GGG - chr8_1:47625509-47625528 None:intergenic 20.0%
!! TGTATTAAGCTTAATATTGA+TGG - chr8_1:47625823-47625842 None:intergenic 20.0%
!! AGGAATATATTGTAATTTAC+AGG + chr8_1:47626114-47626133 Msa1197340:intron 20.0%
!! GGAATATATTGTAATTTACA+GGG + chr8_1:47626115-47626134 Msa1197340:intron 20.0%
!! GAATATATTGTAATTTACAG+GGG + chr8_1:47626116-47626135 Msa1197340:intron 20.0%
!!! AGTTTCTAAATTTTCTTTTC+AGG + chr8_1:47627122-47627141 Msa1197340:intron 20.0%
! TTTCCTATACATCTAATGAT+AGG + chr8_1:47623401-47623420 Msa1197340:CDS 25.0%
!! TAATATTGTCCAATTTCTAG+CGG - chr8_1:47623459-47623478 None:intergenic 25.0%
! TTCTTGTAAATGAGAATATC+AGG + chr8_1:47623599-47623618 Msa1197340:intron 25.0%
! TCTTGTAAATGAGAATATCA+GGG + chr8_1:47623600-47623619 Msa1197340:intron 25.0%
! GCATTAGACAAAAGTTTAAT+GGG - chr8_1:47623645-47623664 None:intergenic 25.0%
! TGCATTAGACAAAAGTTTAA+TGG - chr8_1:47623646-47623665 None:intergenic 25.0%
!!! CATGTCTCATTTTTATTGAT+CGG - chr8_1:47623697-47623716 None:intergenic 25.0%
!! TTTTCATCTGAAAATAGCAA+AGG + chr8_1:47623759-47623778 Msa1197340:intron 25.0%
! ACATTTATCAGAAAATGAAG+TGG - chr8_1:47623793-47623812 None:intergenic 25.0%
!!! GTAGAAACTGACTTTTTTTA+TGG + chr8_1:47623868-47623887 Msa1197340:intron 25.0%
! TAATATACTTTACAGCATAC+AGG + chr8_1:47623972-47623991 Msa1197340:intron 25.0%
!! ATAAGCATGATATATTTTCC+TGG + chr8_1:47624299-47624318 Msa1197340:intron 25.0%
!! TAAGCATGATATATTTTCCT+GGG + chr8_1:47624300-47624319 Msa1197340:intron 25.0%
! ACTAAAAAGAGATAGAATCA+TGG + chr8_1:47624451-47624470 Msa1197340:intron 25.0%
!! AGTTTTTCGCAATTTAGAAA+GGG - chr8_1:47624762-47624781 None:intergenic 25.0%
! GTATAAAATCACATTATAGG+TGG + chr8_1:47624859-47624878 Msa1197340:intron 25.0%
! AAAAAAGTCAGAACAATATG+GGG - chr8_1:47624993-47625012 None:intergenic 25.0%
! GTTTGATTAATAATACCCAA+AGG + chr8_1:47625043-47625062 Msa1197340:intron 25.0%
!! TTTGTAGTATTCATGCATTT+TGG + chr8_1:47625084-47625103 Msa1197340:intron 25.0%
! CTTGTTCATAATTTATCATG+TGG + chr8_1:47625187-47625206 Msa1197340:intron 25.0%
! TGTTCCTTTCTTTAAACTTA+TGG + chr8_1:47625230-47625249 Msa1197340:intron 25.0%
! AACACCATAAGTTTAAAGAA+AGG - chr8_1:47625237-47625256 None:intergenic 25.0%
! TTGTTACAAAGAGATAGTAT+AGG - chr8_1:47625388-47625407 None:intergenic 25.0%
! ATACTATCTCTTTGTAACAA+AGG + chr8_1:47625388-47625407 Msa1197340:intron 25.0%
! AAAGGTAAAATAAAATGTGG+TGG + chr8_1:47625406-47625425 Msa1197340:intron 25.0%
!! GTAATTTTTCACACATTCAT+AGG - chr8_1:47625510-47625529 None:intergenic 25.0%
!!! GATTGGGAGAATAATTTTTT+GGG - chr8_1:47625751-47625770 None:intergenic 25.0%
!!! AGATTGGGAGAATAATTTTT+TGG - chr8_1:47625752-47625771 None:intergenic 25.0%
! AAAAATTATTCTCCCAATCT+CGG + chr8_1:47625752-47625771 Msa1197340:intron 25.0%
! CTCATATTATTTGGCAAATA+TGG - chr8_1:47626065-47626084 None:intergenic 25.0%
!! ATTCCTTATTTCAGAAAGTA+AGG - chr8_1:47626100-47626119 None:intergenic 25.0%
! AAGGATTTAGCTAAAATACA+GGG + chr8_1:47626552-47626571 Msa1197340:CDS 25.0%
!! ATGTAGATGAATGTTTTCTA+TGG - chr8_1:47626799-47626818 None:intergenic 25.0%
! TAGAAAACATTCATCTACAT+TGG + chr8_1:47626799-47626818 Msa1197340:intron 25.0%
! TTGGTAAAAATACTTGTGAA+AGG + chr8_1:47626833-47626852 Msa1197340:intron 25.0%
! TGGTAAAAATACTTGTGAAA+GGG + chr8_1:47626834-47626853 Msa1197340:intron 25.0%
! AATAATTATTATATGGCCCT+TGG - chr8_1:47626942-47626961 None:intergenic 25.0%
!! TTACTCTGCTGTAATAATTT+TGG + chr8_1:47627228-47627247 Msa1197340:intron 25.0%
!!! AGTTTTTTGTTGTTGATTTC+AGG + chr8_1:47627273-47627292 Msa1197340:intron 25.0%
! AAAAATCAAAAGGTGATTGA+TGG + chr8_1:47627304-47627323 Msa1197340:CDS 25.0%
! GCTACTAAATATTATTGGTA+AGG - chr8_1:47627456-47627475 None:intergenic 25.0%
!! TTTTTCCAAAGAGAATAATG+GGG - chr8_1:47627548-47627567 None:intergenic 25.0%
!! GTTTTTCCAAAGAGAATAAT+GGG - chr8_1:47627549-47627568 None:intergenic 25.0%
!! AGTTTTTCCAAAGAGAATAA+TGG - chr8_1:47627550-47627569 None:intergenic 25.0%
!!! ATTCATTTTGATAAAGACGA+CGG + chr8_1:47627586-47627605 Msa1197340:three_prime_UTR 25.0%
! ACTGTGAAGATAAACAATAA+TGG + chr8_1:47627665-47627684 Msa1197340:three_prime_UTR 25.0%
! ACATATATTAACCATTTCAC+AGG - chr8_1:47627813-47627832 None:intergenic 25.0%
TCTCGATTAAAAGATTCAAC+AGG - chr8_1:47622937-47622956 None:intergenic 30.0%
TATGAGTGAAGAAGAATCAA+TGG + chr8_1:47622978-47622997 Msa1197340:CDS 30.0%
! AACCTTTTGTTAGATGAGTT+GGG + chr8_1:47623015-47623034 Msa1197340:CDS 30.0%
ATTTCCTTGTTGGATAAACA+AGG - chr8_1:47623156-47623175 None:intergenic 30.0%
CATCCTATCATTAGATGTAT+AGG - chr8_1:47623407-47623426 None:intergenic 30.0%
CTATACATCTAATGATAGGA+TGG + chr8_1:47623405-47623424 Msa1197340:CDS 30.0%
AGAATATCAGGGATAAGATT+AGG + chr8_1:47623611-47623630 Msa1197340:intron 30.0%
CAATTGAAACATGAGCATAT+AGG + chr8_1:47623667-47623686 Msa1197340:intron 30.0%
TAAAGTGTATCTGACTTATC+TGG + chr8_1:47623727-47623746 Msa1197340:intron 30.0%
GTTTCTAACACGATGATAAA+AGG - chr8_1:47623825-47623844 None:intergenic 30.0%
! TCTACAGCTAAATCGTATTT+TGG - chr8_1:47623853-47623872 None:intergenic 30.0%
!! GTTTTTGAATGATTTTGGGA+GGG - chr8_1:47624036-47624055 None:intergenic 30.0%
! AGTTTTTGAATGATTTTGGG+AGG - chr8_1:47624037-47624056 None:intergenic 30.0%
GGAATAAATCAAGCAATGTA+AGG - chr8_1:47624078-47624097 None:intergenic 30.0%
AACAACAATGTGTGATACTT+AGG - chr8_1:47624160-47624179 None:intergenic 30.0%
AAGCGAGTTTAAAGATTTCA+GGG + chr8_1:47624192-47624211 Msa1197340:intron 30.0%
AGAATATTGTTTATCTACCC+AGG - chr8_1:47624320-47624339 None:intergenic 30.0%
ATGCTATTATGTTTATTCCG+CGG + chr8_1:47624363-47624382 Msa1197340:intron 30.0%
! GTTTTTCGCAATTTAGAAAG+GGG - chr8_1:47624761-47624780 None:intergenic 30.0%
! GAGTTTTTCGCAATTTAGAA+AGG - chr8_1:47624763-47624782 None:intergenic 30.0%
TCTAAATTGCGAAAAACTCT+TGG + chr8_1:47624764-47624783 Msa1197340:intron 30.0%
TTATAGGTGGTCTATATTCA+CGG + chr8_1:47624872-47624891 Msa1197340:intron 30.0%
! TCACGGTTTGATAATATTCA+TGG + chr8_1:47624889-47624908 Msa1197340:intron 30.0%
! CACGGTTTGATAATATTCAT+GGG + chr8_1:47624890-47624909 Msa1197340:intron 30.0%
ATAGTTGCATACAATCCTTT+GGG - chr8_1:47625061-47625080 None:intergenic 30.0%
TATAGTTGCATACAATCCTT+TGG - chr8_1:47625062-47625081 None:intergenic 30.0%
TCTTACGAGACTTAGAAATA+AGG - chr8_1:47625120-47625139 None:intergenic 30.0%
AGCAAAGAAATCTATAAACC+AGG + chr8_1:47625308-47625327 Msa1197340:intron 30.0%
!! AAAATAAAATGTGGTGGATC+TGG + chr8_1:47625412-47625431 Msa1197340:intron 30.0%
TAATAGATGCTTTCAAGACA+AGG - chr8_1:47626031-47626050 None:intergenic 30.0%
!! GAACCTTACTTTCTGAAATA+AGG + chr8_1:47626094-47626113 Msa1197340:intron 30.0%
AACCAAGTAAACAAGAAGTT+GGG + chr8_1:47626336-47626355 Msa1197340:CDS 30.0%
AATGATAAGAGAATCTACCT+TGG + chr8_1:47626361-47626380 Msa1197340:CDS 30.0%
! ATTTGGGAAGTTATTTCAGT+TGG - chr8_1:47626449-47626468 None:intergenic 30.0%
GGTAACAACAGATAGTATTT+GGG - chr8_1:47626465-47626484 None:intergenic 30.0%
TGGTAACAACAGATAGTATT+TGG - chr8_1:47626466-47626485 None:intergenic 30.0%
TATGATTATAGGCAAAAGCA+AGG + chr8_1:47626514-47626533 Msa1197340:intron 30.0%
GAAGGATTTAGCTAAAATAC+AGG + chr8_1:47626551-47626570 Msa1197340:CDS 30.0%
! ATGAAGACAGATCTTTGTTT+AGG + chr8_1:47626622-47626641 Msa1197340:CDS 30.0%
! AGATCTTTGTTTAGGAAGAT+GGG + chr8_1:47626630-47626649 Msa1197340:CDS 30.0%
TTCTTACCTAGAAGTAAGTA+TGG - chr8_1:47626669-47626688 None:intergenic 30.0%
!! GTTAAAAGCATGAGATTTTC+AGG + chr8_1:47626750-47626769 Msa1197340:intron 30.0%
TACATTGGAAATATTCCAGT+TGG + chr8_1:47626814-47626833 Msa1197340:intron 30.0%
!! TCACAAGTATTTTTACCAAC+TGG - chr8_1:47626832-47626851 None:intergenic 30.0%
TATCGCAATATGCTTAACTT+GGG - chr8_1:47626870-47626889 None:intergenic 30.0%
ATATCGCAATATGCTTAACT+TGG - chr8_1:47626871-47626890 None:intergenic 30.0%
TAAGCATATTGCGATATCTT+TGG + chr8_1:47626874-47626893 Msa1197340:CDS 30.0%
ACACCATATATCAGATTTAC+AGG + chr8_1:47627152-47627171 Msa1197340:CDS 30.0%
TCTCCTGTAAATCTGATATA+TGG - chr8_1:47627158-47627177 None:intergenic 30.0%
!!! CTGCTGTAATAATTTTGGTT+TGG + chr8_1:47627233-47627252 Msa1197340:intron 30.0%
!!! TTTTTGTTGTTGATTTCAGG+AGG + chr8_1:47627276-47627295 Msa1197340:intron 30.0%
GGAGGATATGAAAAATCAAA+AGG + chr8_1:47627294-47627313 Msa1197340:intron 30.0%
GCAAAAAAATAAGAGGAACA+AGG - chr8_1:47627526-47627545 None:intergenic 30.0%
TAATGGGGCAAAAAAATAAG+AGG - chr8_1:47627533-47627552 None:intergenic 30.0%
! CTTTGGAAAAACTAGAATGA+AGG + chr8_1:47627557-47627576 Msa1197340:intron 30.0%
TTTCGGTATAAGAATGATGA+AGG + chr8_1:47627842-47627861 Msa1197340:three_prime_UTR 30.0%
! CAACCTTTTGTTAGATGAGT+TGG + chr8_1:47623014-47623033 Msa1197340:CDS 35.0%
! GAAACCTTGTTTATCCAACA+AGG + chr8_1:47623149-47623168 Msa1197340:CDS 35.0%
GGAAGAAATAGAGAACTTCA+AGG + chr8_1:47623310-47623329 Msa1197340:intron 35.0%
TAGAGCTATAGTAAAGCTGT+GGG + chr8_1:47623339-47623358 Msa1197340:CDS 35.0%
GCAAAAATAGTCATCAATCG+TGG + chr8_1:47623376-47623395 Msa1197340:CDS 35.0%
TCTCATAAACCGCTAGAAAT+TGG + chr8_1:47623447-47623466 Msa1197340:intron 35.0%
TATAAAACAACCCATCTGTG+TGG + chr8_1:47623524-47623543 Msa1197340:intron 35.0%
CAGAATTCACACACAAACTA+AGG + chr8_1:47623942-47623961 Msa1197340:intron 35.0%
CAAGCGAGTTTAAAGATTTC+AGG + chr8_1:47624191-47624210 Msa1197340:intron 35.0%
AATCAGATGACCTAAGTCAA+TGG + chr8_1:47624614-47624633 Msa1197340:intron 35.0%
ATGACCTAAGTCAATGGAAT+AGG + chr8_1:47624620-47624639 Msa1197340:intron 35.0%
CATAATGTGTGTGACTTTCA+TGG + chr8_1:47624655-47624674 Msa1197340:intron 35.0%
! TGTGATTTTATACAAGCGGT+GGG - chr8_1:47624852-47624871 None:intergenic 35.0%
! ATGTGATTTTATACAAGCGG+TGG - chr8_1:47624853-47624872 None:intergenic 35.0%
!! AAGTGATTTGCTGCTATTGA+AGG + chr8_1:47624938-47624957 Msa1197340:intron 35.0%
TACGAGACTTAGAAATAAGG+TGG - chr8_1:47625117-47625136 None:intergenic 35.0%
ATGCATTTGCAGAAATTGAC+CGG + chr8_1:47625265-47625284 Msa1197340:intron 35.0%
AGAAATCTATAAACCAGGAG+AGG + chr8_1:47625313-47625332 Msa1197340:intron 35.0%
! TTTTCACACATTCATAGGGA+GGG - chr8_1:47625505-47625524 None:intergenic 35.0%
! TTTTTCACACATTCATAGGG+AGG - chr8_1:47625506-47625525 None:intergenic 35.0%
! AAAAGCTTTTAACCATCAGC+TGG - chr8_1:47625596-47625615 None:intergenic 35.0%
!! GATGTTTGCTATAGAGAAAG+CGG - chr8_1:47625671-47625690 None:intergenic 35.0%
!!! TGGGAGAATAATTTTTTGGG+AGG - chr8_1:47625748-47625767 None:intergenic 35.0%
! AATATTGATGGTTCCTCGTT+TGG - chr8_1:47625811-47625830 None:intergenic 35.0%
! GTCTTCTATTTCTTCTGCTA+TGG - chr8_1:47625938-47625957 None:intergenic 35.0%
TGCCAAATAATATGAGTGAC+TGG + chr8_1:47626069-47626088 Msa1197340:intron 35.0%
GCCAAATAATATGAGTGACT+GGG + chr8_1:47626070-47626089 Msa1197340:intron 35.0%
CCAAATAATATGAGTGACTG+GGG + chr8_1:47626071-47626090 Msa1197340:intron 35.0%
CAAATAATATGAGTGACTGG+GGG + chr8_1:47626072-47626091 Msa1197340:intron 35.0%
! TAGTTTTTGTCTCTCAGTCA+GGG - chr8_1:47626174-47626193 None:intergenic 35.0%
!! TTAGTTTTTGTCTCTCAGTC+AGG - chr8_1:47626175-47626194 None:intergenic 35.0%
! CAACTTCTTGTTTACTTGGT+TGG - chr8_1:47626337-47626356 None:intergenic 35.0%
CAACCAAGTAAACAAGAAGT+TGG + chr8_1:47626335-47626354 Msa1197340:CDS 35.0%
! TTCCCAACTTCTTGTTTACT+TGG - chr8_1:47626341-47626360 None:intergenic 35.0%
! TAAAGAAGCTAGTCTATCCA+AGG - chr8_1:47626381-47626400 None:intergenic 35.0%
TATAGGCAAAAGCAAGGTTA+AGG + chr8_1:47626520-47626539 Msa1197340:intron 35.0%
GTTAATGTCTCCAAATCAGT+TGG - chr8_1:47626600-47626619 None:intergenic 35.0%
! CAGATCTTTGTTTAGGAAGA+TGG + chr8_1:47626629-47626648 Msa1197340:CDS 35.0%
ATGAAGCCATACTTACTTCT+AGG + chr8_1:47626660-47626679 Msa1197340:CDS 35.0%
!!! AAAGCATGAGATTTTCAGGT+AGG + chr8_1:47626754-47626773 Msa1197340:intron 35.0%
AGTCATCATGAGAAGAAACA+TGG - chr8_1:47627363-47627382 None:intergenic 35.0%
!! TCTACGGAAAAAGAGTATTC+AGG - chr8_1:47627390-47627409 None:intergenic 35.0%
TTTAGTAAATTGCAAGCACC+TGG - chr8_1:47627419-47627438 None:intergenic 35.0%
! TTTTGCCCCATTATTCTCTT+TGG + chr8_1:47627540-47627559 Msa1197340:intron 35.0%
!! CTATTTGACTTGAGCATCAT+GGG + chr8_1:47627640-47627659 Msa1197340:three_prime_UTR 35.0%
AGATTTCTATCCAATGTCGT+AGG + chr8_1:47627767-47627786 Msa1197340:three_prime_UTR 35.0%
TTTCACAGGTTACATCACTT+GGG - chr8_1:47627799-47627818 None:intergenic 35.0%
ATTTCACAGGTTACATCACT+TGG - chr8_1:47627800-47627819 None:intergenic 35.0%
AAGTGATGTAACCTGTGAAA+TGG + chr8_1:47627799-47627818 Msa1197340:three_prime_UTR 35.0%
! AGACTCTGCAGAGTATTTGA+AGG + chr8_1:47622954-47622973 Msa1197340:CDS 40.0%
GACCCAACTCATCTAACAAA+AGG - chr8_1:47623020-47623039 None:intergenic 40.0%
TGATCAGCATCAACAGGTAA+AGG - chr8_1:47623072-47623091 None:intergenic 40.0%
GGTAATTGATCAGCATCAAC+AGG - chr8_1:47623078-47623097 None:intergenic 40.0%
TTTATACCCTGGAACAACAG+CGG - chr8_1:47623100-47623119 None:intergenic 40.0%
! CTGAGTGATGTTTTATACCC+TGG - chr8_1:47623111-47623130 None:intergenic 40.0%
AAACAAGGTTTCACCCCATA+CGG - chr8_1:47623141-47623160 None:intergenic 40.0%
CATGACAGTCATTTCCTTGT+TGG - chr8_1:47623166-47623185 None:intergenic 40.0%
CTAGAGCTATAGTAAAGCTG+TGG + chr8_1:47623338-47623357 Msa1197340:CDS 40.0%
! ACTCTTTTAGTCAACAGCCA+AGG - chr8_1:47623556-47623575 None:intergenic 40.0%
TCCTAGAAATTCGAGAGTCT+TGG + chr8_1:47624005-47624024 Msa1197340:intron 40.0%
ACCAAGACTCTCGAATTTCT+AGG - chr8_1:47624009-47624028 None:intergenic 40.0%
CTACCTAAAACTGCACACAA+CGG + chr8_1:47624120-47624139 Msa1197340:intron 40.0%
TTCAGGGAATTGCCAAAGTT+AGG + chr8_1:47624208-47624227 Msa1197340:intron 40.0%
GTAGTCAATTTGTCTGTGCT+TGG - chr8_1:47624268-47624287 None:intergenic 40.0%
TAAAATATCTCCTTGAGCCG+CGG - chr8_1:47624383-47624402 None:intergenic 40.0%
AACTGATAACACCCAGTTGA+GGG - chr8_1:47624522-47624541 None:intergenic 40.0%
!! AGTGCCTATTCCATTGACTT+AGG - chr8_1:47624627-47624646 None:intergenic 40.0%
!!! TCATGGTGTCTGCTTTGTTT+TGG + chr8_1:47624672-47624691 Msa1197340:intron 40.0%
ACCTACCATACTGTGCTTAT+TGG + chr8_1:47624815-47624834 Msa1197340:intron 40.0%
ACCAATAAGCACAGTATGGT+AGG - chr8_1:47624819-47624838 None:intergenic 40.0%
TCACACCAATAAGCACAGTA+TGG - chr8_1:47624823-47624842 None:intergenic 40.0%
CAATAGCAGCAAATCACTTG+TGG - chr8_1:47624937-47624956 None:intergenic 40.0%
TTGAAGGATAAGCCTGAATG+TGG + chr8_1:47624954-47624973 Msa1197340:intron 40.0%
TGCATTTGCAGAAATTGACC+GGG + chr8_1:47625266-47625285 Msa1197340:intron 40.0%
!! GATTAAAATAAAGGTGCCCC+CGG - chr8_1:47625287-47625306 None:intergenic 40.0%
TCACCATGTAATCTGTTCGT+CGG - chr8_1:47625345-47625364 None:intergenic 40.0%
ATGGTGACAGTCTGGAAAAA+AGG + chr8_1:47625358-47625377 Msa1197340:intron 40.0%
AGTGCAAGCTAGGAAGATTA+AGG + chr8_1:47625446-47625465 Msa1197340:intron 40.0%
AGGAAGATTAAGGCCATTCT+TGG + chr8_1:47625456-47625475 Msa1197340:intron 40.0%
GATTGAGACAGATTCGTTGA+TGG - chr8_1:47625623-47625642 None:intergenic 40.0%
TCAAAACATTGGCCATGCTT+CGG - chr8_1:47625719-47625738 None:intergenic 40.0%
! GGAGGTTTTGCTCAAAACAT+TGG - chr8_1:47625730-47625749 None:intergenic 40.0%
!! TGGTGTTGTTATCCGAGATT+GGG - chr8_1:47625767-47625786 None:intergenic 40.0%
!! TTGGTGTTGTTATCCGAGAT+TGG - chr8_1:47625768-47625787 None:intergenic 40.0%
AGCTTAATACATCCCAAACG+AGG + chr8_1:47625832-47625851 Msa1197340:intron 40.0%
GCTTAATACATCCCAAACGA+GGG + chr8_1:47625833-47625852 Msa1197340:intron 40.0%
CTTAATACATCCCAAACGAG+GGG + chr8_1:47625834-47625853 Msa1197340:intron 40.0%
TTAATACATCCCAAACGAGG+GGG + chr8_1:47625835-47625854 Msa1197340:intron 40.0%
TGTCTGATTAAAGCGTGAGT+GGG + chr8_1:47626000-47626019 Msa1197340:intron 40.0%
CCCCAGTCACTCATATTATT+TGG - chr8_1:47626074-47626093 None:intergenic 40.0%
TCTCAAATGTCGTTACTTGC+TGG + chr8_1:47626269-47626288 Msa1197340:CDS 40.0%
AAGGTTAAGGAAGTCTGAGA+AGG + chr8_1:47626533-47626552 Msa1197340:CDS 40.0%
ATGTCTCCAAATCAGTTGGA+AGG - chr8_1:47626596-47626615 None:intergenic 40.0%
!! AGCTTTAAACGTAGCTGCTT+TGG + chr8_1:47626704-47626723 Msa1197340:intron 40.0%
! ATATCTTTGGAAGCTGAGAG+TGG + chr8_1:47626887-47626906 Msa1197340:CDS 40.0%
ATCTGTAGACAAGGATACCA+AGG + chr8_1:47626922-47626941 Msa1197340:CDS 40.0%
TCTGTAGACAAGGATACCAA+GGG + chr8_1:47626923-47626942 Msa1197340:CDS 40.0%
! CTTCGTGACAACAAGCTTTT+GGG - chr8_1:47627004-47627023 None:intergenic 40.0%
! TCTTCGTGACAACAAGCTTT+TGG - chr8_1:47627005-47627024 None:intergenic 40.0%
TATTGAGCTTCAAAGACGAG+AGG + chr8_1:47627042-47627061 Msa1197340:CDS 40.0%
! TTTTTCCGTAGACCAATACC+AGG + chr8_1:47627398-47627417 Msa1197340:exon 40.0%
AAATTGCAAGCACCTGGTAT+TGG - chr8_1:47627413-47627432 None:intergenic 40.0%
!! CATTTTGATAAAGACGACGG+TGG + chr8_1:47627589-47627608 Msa1197340:three_prime_UTR 40.0%
!! GCTATTTGACTTGAGCATCA+TGG + chr8_1:47627639-47627658 Msa1197340:three_prime_UTR 40.0%
ATGTGACACATCAAAAGGCA+TGG - chr8_1:47627718-47627737 None:intergenic 40.0%
! ATGCCTTTTGATGTGTCACA+TGG + chr8_1:47627717-47627736 Msa1197340:three_prime_UTR 40.0%
GTTCCATGTGACACATCAAA+AGG - chr8_1:47627723-47627742 None:intergenic 40.0%
TTCACAGGTTACATCACTTG+GGG - chr8_1:47627798-47627817 None:intergenic 40.0%
CATCAACAGGTAAAGGCTCA+CGG - chr8_1:47623065-47623084 None:intergenic 45.0%
AATTACCCGCTGTTGTTCCA+GGG + chr8_1:47623091-47623110 Msa1197340:CDS 45.0%
TTATACCCTGGAACAACAGC+GGG - chr8_1:47623099-47623118 None:intergenic 45.0%
TCACTCAGACTTCTTCCGTA+TGG + chr8_1:47623123-47623142 Msa1197340:intron 45.0%
CACTCAGACTTCTTCCGTAT+GGG + chr8_1:47623124-47623143 Msa1197340:intron 45.0%
ACTCAGACTTCTTCCGTATG+GGG + chr8_1:47623125-47623144 Msa1197340:intron 45.0%
AGGAAATGACTGTCATGCGT+AGG + chr8_1:47623169-47623188 Msa1197340:CDS 45.0%
GCGTAGGATTGCTAGAAGAA+CGG + chr8_1:47623185-47623204 Msa1197340:CDS 45.0%
GAGAGCTTCTTGCATACCAA+GGG - chr8_1:47623223-47623242 None:intergenic 45.0%
AGAGAGCTTCTTGCATACCA+AGG - chr8_1:47623224-47623243 None:intergenic 45.0%
TAGGATGGCTGAAGAACTCA+AGG + chr8_1:47623420-47623439 Msa1197340:CDS 45.0%
! CTTTTAGTCAACAGCCAAGG+AGG - chr8_1:47623553-47623572 None:intergenic 45.0%
TCAGTGGCATAGCCTAACTT+TGG - chr8_1:47624223-47624242 None:intergenic 45.0%
TATGTTTATTCCGCGGCTCA+AGG + chr8_1:47624370-47624389 Msa1197340:intron 45.0%
! GCGGCTCAAGGAGATATTTT+AGG + chr8_1:47624382-47624401 Msa1197340:intron 45.0%
TTTGTCAACCTTCCCTCAAC+TGG + chr8_1:47624507-47624526 Msa1197340:intron 45.0%
TTGTCAACCTTCCCTCAACT+GGG + chr8_1:47624508-47624527 Msa1197340:intron 45.0%
CAACTGATAACACCCAGTTG+AGG - chr8_1:47624523-47624542 None:intergenic 45.0%
AGCACAGTATGGTAGGTTCA+AGG - chr8_1:47624812-47624831 None:intergenic 45.0%
TTCATGGGAGTGAGTTGCTA+TGG + chr8_1:47624905-47624924 Msa1197340:intron 45.0%
TGCATGCAAGAACCACATTC+AGG - chr8_1:47624969-47624988 None:intergenic 45.0%
GCATTTGCAGAAATTGACCG+GGG + chr8_1:47625267-47625286 Msa1197340:intron 45.0%
CATTTGCAGAAATTGACCGG+GGG + chr8_1:47625268-47625287 Msa1197340:intron 45.0%
!! TGTAATCTGTTCGTCGGTTC+AGG - chr8_1:47625339-47625358 None:intergenic 45.0%
GAACCGACGAACAGATTACA+TGG + chr8_1:47625339-47625358 Msa1197340:intron 45.0%
CAGATTACATGGTGACAGTC+TGG + chr8_1:47625350-47625369 Msa1197340:intron 45.0%
! TTCCTAGCTTGCACTCTCAA+TGG - chr8_1:47625441-47625460 None:intergenic 45.0%
GCTGATGCTTTAGCCAAGAA+TGG - chr8_1:47625472-47625491 None:intergenic 45.0%
! AGCTTTTAACCATCAGCTGG+AGG - chr8_1:47625593-47625612 None:intergenic 45.0%
! TGAGACAGATTCGTTGATGG+TGG - chr8_1:47625620-47625639 None:intergenic 45.0%
!! GTTTGCTATAGAGAAAGCGG+TGG - chr8_1:47625668-47625687 None:intergenic 45.0%
GTTTGTGGCTGAGTTAAGTG+CGG - chr8_1:47625695-47625714 None:intergenic 45.0%
! TCAACATCCGCACCCTTTTT+CGG - chr8_1:47625912-47625931 None:intergenic 45.0%
CAGAAGAAATAGAAGACCCC+TGG + chr8_1:47625941-47625960 Msa1197340:intron 45.0%
GTGTCTGATTAAAGCGTGAG+TGG + chr8_1:47625999-47626018 Msa1197340:intron 45.0%
GTCTGATTAAAGCGTGAGTG+GGG + chr8_1:47626001-47626020 Msa1197340:intron 45.0%
! TTGTCTCTCAGTCAGGGTTT+TGG - chr8_1:47626168-47626187 None:intergenic 45.0%
! TTCCTCGTCTTGTTGGAGAA+CGG - chr8_1:47626198-47626217 None:intergenic 45.0%
CTTTCTCTTCCTCGTCTTGT+TGG - chr8_1:47626205-47626224 None:intergenic 45.0%
AATCAGTTGGAAGGTCTGCT+GGG - chr8_1:47626587-47626606 None:intergenic 45.0%
AAATCAGTTGGAAGGTCTGC+TGG - chr8_1:47626588-47626607 None:intergenic 45.0%
AGCAGACCTTCCAACTGATT+TGG + chr8_1:47626587-47626606 Msa1197340:CDS 45.0%
!! GGTGCTGATATCTGTAGACA+AGG + chr8_1:47626913-47626932 Msa1197340:CDS 45.0%
!! CTTTTGGGTCTCATAACCTG+TGG - chr8_1:47626989-47627008 None:intergenic 45.0%
!! AAGCTTGTTGTCACGAAGAC+AGG + chr8_1:47627006-47627025 Msa1197340:CDS 45.0%
!! AAGCACCTGGTATTGGTCTA+CGG - chr8_1:47627406-47627425 None:intergenic 45.0%
TCACAGGTTACATCACTTGG+GGG - chr8_1:47627797-47627816 None:intergenic 45.0%
!! AAATTATATTATATGATTAT+AGG + chr8_1:47626503-47626522 Msa1197340:intron 5.0%
!! ATATATGTAAATATTTATTT+CGG + chr8_1:47627825-47627844 Msa1197340:three_prime_UTR 5.0%
!! CCTGTCCAATCTTTGAAGCG+CGG - chr8_1:47623042-47623061 None:intergenic 50.0%
CAATTACCCGCTGTTGTTCC+AGG + chr8_1:47623090-47623109 Msa1197340:CDS 50.0%
TGCATACCAAGGGCAAAGTG+CGG - chr8_1:47623213-47623232 None:intergenic 50.0%
! TTCTTTACTGGCTGCACTGC+AGG + chr8_1:47623289-47623308 Msa1197340:intron 50.0%
! TGGCCGTTGTGTGCAGTTTT+AGG - chr8_1:47624126-47624145 None:intergenic 50.0%
GATAACACCCAGTTGAGGGA+AGG - chr8_1:47624518-47624537 None:intergenic 50.0%
! CTAGCTTGCACTCTCAATGG+TGG - chr8_1:47625438-47625457 None:intergenic 50.0%
! CACCATTGAGAGTGCAAGCT+AGG + chr8_1:47625436-47625455 Msa1197340:intron 50.0%
CTTGGATGTTGCGTGTCAGA+TGG - chr8_1:47625567-47625586 None:intergenic 50.0%
CATCTGACACGCAACATCCA+AGG + chr8_1:47625565-47625584 Msa1197340:intron 50.0%
AAAGCGGTGGAGATGCATTG+GGG - chr8_1:47625655-47625674 None:intergenic 50.0%
GAAAGCGGTGGAGATGCATT+GGG - chr8_1:47625656-47625675 None:intergenic 50.0%
AGAAAGCGGTGGAGATGCAT+TGG - chr8_1:47625657-47625676 None:intergenic 50.0%
TAAGCCGGTGTCTTCCAAGA+AGG - chr8_1:47625872-47625891 None:intergenic 50.0%
! CAACATCCGCACCCTTTTTC+GGG - chr8_1:47625911-47625930 None:intergenic 50.0%
! GAAAAAGGGTGCGGATGTTG+AGG + chr8_1:47625911-47625930 Msa1197340:intron 50.0%
TGAGTTCCACTTTGCTCCAG+GGG - chr8_1:47625960-47625979 None:intergenic 50.0%
CTGAGTTCCACTTTGCTCCA+GGG - chr8_1:47625961-47625980 None:intergenic 50.0%
AACCGTTCTCCAACAAGACG+AGG + chr8_1:47626193-47626212 Msa1197340:CDS 50.0%
TGGAACCCTTGCTGAGACTA+GGG + chr8_1:47626289-47626308 Msa1197340:CDS 50.0%
TAGGGCAGCAACTGCCAATT+GGG + chr8_1:47626307-47626326 Msa1197340:CDS 50.0%
! ACTTGGTTGGTGTCCCCAAT+TGG - chr8_1:47626324-47626343 None:intergenic 50.0%
GGTAGGCGAGATGTTTATGC+TGG + chr8_1:47626771-47626790 Msa1197340:intron 50.0%
! TCTTTGGAAGCTGAGAGTGG+TGG + chr8_1:47626890-47626909 Msa1197340:CDS 50.0%
! CTTTGGAAGCTGAGAGTGGT+GGG + chr8_1:47626891-47626910 Msa1197340:CDS 50.0%
TTTGGAAGCTGAGAGTGGTG+GGG + chr8_1:47626892-47626911 Msa1197340:CDS 50.0%
GAAGAACTACTTCCGTCCAC+AGG + chr8_1:47626970-47626989 Msa1197340:CDS 50.0%
TGGGTCTCATAACCTGTGGA+CGG - chr8_1:47626985-47627004 None:intergenic 50.0%
GTTGTCACGAAGACAGGCAT+TGG + chr8_1:47627012-47627031 Msa1197340:CDS 50.0%
! CCAGTGTCGAGTACAGAATC+TGG - chr8_1:47627333-47627352 None:intergenic 50.0%
CCAGATTCTGTACTCGACAC+TGG + chr8_1:47627330-47627349 Msa1197340:CDS 50.0%
!! TGGGGGTATTCCTACGACAT+TGG - chr8_1:47627780-47627799 None:intergenic 50.0%
TGGGTCCGCGCTTCAAAGAT+TGG + chr8_1:47623034-47623053 Msa1197340:CDS 55.0%
CCGCGCTTCAAAGATTGGAC+AGG + chr8_1:47623039-47623058 Msa1197340:CDS 55.0%
AAGGAGGTCGCCACACAGAT+GGG - chr8_1:47623537-47623556 None:intergenic 55.0%
TCCAAGGAACCTCCAGCTGA+TGG + chr8_1:47625581-47625600 Msa1197340:intron 55.0%
ACCATCAGCTGGAGGTTCCT+TGG - chr8_1:47625585-47625604 None:intergenic 55.0%
AGATGCATTGGGGGGATGTC+TGG - chr8_1:47625645-47625664 None:intergenic 55.0%
AAGCGGTGGAGATGCATTGG+GGG - chr8_1:47625654-47625673 None:intergenic 55.0%
TGTCTTCCAAGAAGGTCGCG+TGG - chr8_1:47625864-47625883 None:intergenic 55.0%
GCGACCTTCTTGGAAGACAC+CGG + chr8_1:47625865-47625884 Msa1197340:intron 55.0%
!! TTGGAAGACACCGGCTTACG+AGG + chr8_1:47625874-47625893 Msa1197340:intron 55.0%
!! TGGAAGACACCGGCTTACGA+GGG + chr8_1:47625875-47625894 Msa1197340:intron 55.0%
GAGAAGCCCGAAAAAGGGTG+CGG + chr8_1:47625902-47625921 Msa1197340:intron 55.0%
AGAAGACCCCTGGAGCAAAG+TGG + chr8_1:47625951-47625970 Msa1197340:intron 55.0%
GCTGAGTTCCACTTTGCTCC+AGG - chr8_1:47625962-47625981 None:intergenic 55.0%
GGAGCAAAGTGGAACTCAGC+TGG + chr8_1:47625962-47625981 Msa1197340:intron 55.0%
!!! AGGGTTTTGGTGACGACAGG+AGG - chr8_1:47626155-47626174 None:intergenic 55.0%
!!! GTCAGGGTTTTGGTGACGAC+AGG - chr8_1:47626158-47626177 None:intergenic 55.0%
CTGGAACCCTTGCTGAGACT+AGG + chr8_1:47626288-47626307 Msa1197340:CDS 55.0%
TGCTGCCCTAGTCTCAGCAA+GGG - chr8_1:47626297-47626316 None:intergenic 55.0%
TTGCTGCCCTAGTCTCAGCA+AGG - chr8_1:47626298-47626317 None:intergenic 55.0%
CTAGGGCAGCAACTGCCAAT+TGG + chr8_1:47626306-47626325 Msa1197340:CDS 55.0%
AGGGCAGCAACTGCCAATTG+GGG + chr8_1:47626308-47626327 Msa1197340:CDS 55.0%
CAAGGAGGTCGCCACACAGA+TGG - chr8_1:47623538-47623557 None:intergenic 60.0%
CATCTGTGTGGCGACCTCCT+TGG + chr8_1:47623536-47623555 Msa1197340:intron 60.0%
AGCGGTGGAGATGCATTGGG+GGG - chr8_1:47625653-47625672 None:intergenic 60.0%
CAGCCACAAACGCCGAAGCA+TGG + chr8_1:47625704-47625723 Msa1197340:intron 60.0%
TGGCCATGCTTCGGCGTTTG+TGG - chr8_1:47625710-47625729 None:intergenic 60.0%
ACACCAACCGCACCTGACGA+AGG + chr8_1:47625781-47625800 Msa1197340:intron 60.0%
CACCAACCGCACCTGACGAA+GGG + chr8_1:47625782-47625801 Msa1197340:intron 60.0%
ACCAACCGCACCTGACGAAG+GGG + chr8_1:47625783-47625802 Msa1197340:intron 60.0%
! TCGTTTGGCTCCCCTTCGTC+AGG - chr8_1:47625796-47625815 None:intergenic 60.0%
TGACGAAGGGGAGCCAAACG+AGG + chr8_1:47625795-47625814 Msa1197340:intron 60.0%
GCGCGGAGAAGCCCGAAAAA+GGG + chr8_1:47625897-47625916 Msa1197340:intron 60.0%
!! TCGTCGGTTCAGGCCTCTCC+TGG - chr8_1:47625329-47625348 None:intergenic 65.0%
TCCCCTTCGTCAGGTGCGGT+TGG - chr8_1:47625787-47625806 None:intergenic 65.0%
TGGCTCCCCTTCGTCAGGTG+CGG - chr8_1:47625791-47625810 None:intergenic 65.0%
TTCTCCGCGCCCTCGTAAGC+CGG - chr8_1:47625887-47625906 None:intergenic 65.0%
GGCGCGGAGAAGCCCGAAAA+AGG + chr8_1:47625896-47625915 Msa1197340:intron 65.0%
ACGGCGCCGCACTTTGCCCT+TGG + chr8_1:47623204-47623223 Msa1197340:CDS 70.0%
GCGTGGCAGCCCCCTCGTTT+GGG - chr8_1:47625847-47625866 None:intergenic 70.0%
GGGCTGCCACGCGACCTTCT+TGG + chr8_1:47625855-47625874 Msa1197340:intron 70.0%
!! GACACCGGCTTACGAGGGCG+CGG + chr8_1:47625880-47625899 Msa1197340:intron 70.0%
CGCGTGGCAGCCCCCTCGTT+TGG - chr8_1:47625848-47625867 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47622925 47627881 47622925 ID=Msa1197340;Name=Msa1197340
chr8_1 mRNA 47622925 47627881 47622925 ID=Msa1197340-mRNA-1;Parent=Msa1197340;Name=Msa1197340-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.37|0.33|1|0.5|0.22|9|342|400
chr8_1 exon 47622925 47623112 47622925 ID=Msa1197340-mRNA-1:exon:15108;Parent=Msa1197340-mRNA-1
chr8_1 exon 47623131 47623225 47623131 ID=Msa1197340-mRNA-1:exon:15109;Parent=Msa1197340-mRNA-1
chr8_1 exon 47623311 47623441 47623311 ID=Msa1197340-mRNA-1:exon:15110;Parent=Msa1197340-mRNA-1
chr8_1 exon 47626182 47626430 47626182 ID=Msa1197340-mRNA-1:exon:15111;Parent=Msa1197340-mRNA-1
chr8_1 exon 47626525 47626681 47626525 ID=Msa1197340-mRNA-1:exon:15112;Parent=Msa1197340-mRNA-1
chr8_1 exon 47626855 47627063 47626855 ID=Msa1197340-mRNA-1:exon:15113;Parent=Msa1197340-mRNA-1
chr8_1 exon 47627144 47627203 47627144 ID=Msa1197340-mRNA-1:exon:15114;Parent=Msa1197340-mRNA-1
chr8_1 exon 47627295 47627440 47627295 ID=Msa1197340-mRNA-1:exon:15115;Parent=Msa1197340-mRNA-1
chr8_1 exon 47627572 47627881 47627572 ID=Msa1197340-mRNA-1:exon:15116;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47622925 47623112 47622925 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47623131 47623225 47623131 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47623311 47623441 47623311 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47626182 47626430 47626182 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47626525 47626681 47626525 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47626855 47627063 47626855 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47627144 47627203 47627144 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 CDS 47627295 47627408 47627295 ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1
chr8_1 three_prime_UTR 47627409 47627440 47627409 ID=Msa1197340-mRNA-1:three_prime_utr;Parent=Msa1197340-mRNA-1
chr8_1 three_prime_UTR 47627572 47627881 47627572 ID=Msa1197340-mRNA-1:three_prime_utr;Parent=Msa1197340-mRNA-1
Gene Sequence

>Msa1197340

ATGGTTGGACCTGTTGAATCTTTTAATCGAGACTCTGCAGAGTATTTGAAGGATATGAGTGAAGAAGAATCAATGGAATTGATCGAACTCAACCTTTTGTTAGATGAGTTGGGTCCGCGCTTCAAAGATTGGACAGGCCGTGAGCCTTTACCTGTTGATGCTGATCAATTACCCGCTGTTGTTCCAGGACTTCTTCCGTATGGGGTGAAACCTTGTTTATCCAACAAGGAAATGACTGTCATGCGTAGGATTGCTAGAAGAACGGCGCCGCACTTTGCCCTTGGAAGAAATAGAGAACTTCAAGGTCTAGCTAGAGCTATAGTAAAGCTGTGGGAAACAAGCGCTGTTGCAAAAATAGTCATCAATCGTGGTGTTTCCTATACATCTAATGATAGGATGGCTGAAGAACTCAAGAGACAAAAACTAACCGTTCTCCAACAAGACGAGGAAGAGAAAGCACGTCAAAATGCTTCATCAATTACTTTATCAAATAGCAAATCATCTCAAATGTCGTTACTTGCTGGAACCCTTGCTGAGACTAGGGCAGCAACTGCCAATTGGGGACACCAACCAAGTAAACAAGAAGTTGGGAAAATGATAAGAGAATCTACCTTGGATAGACTAGCTTCTTTAATCAGAAATCATGAGAGTAAACTAGCTCTAGCAAAAGCAAGGTTAAGGAAGTCTGAGAAGGATTTAGCTAAAATACAGGGTGATTTTGACCCAGCAGACCTTCCAACTGATTTGGAGACATTAACTAATGAAGACAGATCTTTGTTTAGGAAGATGGGTCTGAGTATGAAGCCATACTTACTTCTAGGGAAAAATTTAGCCCAAGTTAAGCATATTGCGATATCTTTGGAAGCTGAGAGTGGTGGGGTGCTGATATCTGTAGACAAGGATACCAAGGGCCATATAATAATTATTTATCGTGGGAAGAACTACTTCCGTCCACAGGTTATGAGACCCAAAAGCTTGTTGTCACGAAGACAGGCATTGGCTCGATCTATTGAGCTTCAAAGACGAGAGGCACTAAAACACCATATATCAGATTTACAGGAGATGATTGAGTTGCTCAAATCTGAGCTAGAGGATATGAAAAATCAAAAGGTGATTGATGGTGACCAGATTCTGTACTCGACACTGGATAACAACCATGTTTCTTCTCATGATGACTTGAACCTGAATACTCTTTTTCCGTAG

Protein sequence

>Msa1197340

MVGPVESFNRDSAEYLKDMSEEESMELIELNLLLDELGPRFKDWTGREPLPVDADQLPAVVPGLLPYGVKPCLSNKEMTVMRRIARRTAPHFALGRNRELQGLARAIVKLWETSAVAKIVINRGVSYTSNDRMAEELKRQKLTVLQQDEEEKARQNASSITLSNSKSSQMSLLAGTLAETRAATANWGHQPSKQEVGKMIRESTLDRLASLIRNHESKLALAKARLRKSEKDLAKIQGDFDPADLPTDLETLTNEDRSLFRKMGLSMKPYLLLGKNLAQVKHIAISLEAESGGVLISVDKDTKGHIIIIYRGKNYFRPQVMRPKSLLSRRQALARSIELQRREALKHHISDLQEMIELLKSELEDMKNQKVIDGDQILYSTLDNNHVSSHDDLNLNTLFP*