Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1197340 | XP_013458481.1 | 79.372 | 446 | 23 | 4 | 1 | 378 | 300 | 744 | 0.0 | 686 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1197340 | sp|A7XN92|CFM3_MAIZE | 43.155 | 431 | 168 | 6 | 29 | 388 | 323 | 747 | 3.54e-101 | 322 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1197340 | A0A072US81 | 79.372 | 446 | 23 | 4 | 1 | 378 | 300 | 744 | 0.0 | 686 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0220580 | Msa1197340 | 0.811532 | 6.678289e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1197340 | MtrunA17_Chr4g0071101 | 79.372 | 446 | 23 | 4 | 1 | 378 | 300 | 744 | 0.0 | 686 |
Msa1197340 | MtrunA17_Chr1g0187011 | 44.836 | 426 | 166 | 4 | 29 | 386 | 367 | 791 | 2.53e-111 | 345 |
Msa1197340 | MtrunA17_Chr6g0484411 | 39.524 | 420 | 180 | 5 | 12 | 363 | 347 | 760 | 8.42e-79 | 259 |
Msa1197340 | MtrunA17_Chr6g0451621 | 38.684 | 380 | 190 | 5 | 27 | 363 | 317 | 696 | 1.62e-70 | 239 |
Msa1197340 | MtrunA17_Chr8g0391141 | 36.269 | 386 | 184 | 6 | 17 | 344 | 222 | 603 | 1.42e-59 | 204 |
Msa1197340 | MtrunA17_Chr2g0330811 | 35.392 | 421 | 194 | 8 | 29 | 376 | 332 | 747 | 2.22e-58 | 202 |
Msa1197340 | MtrunA17_Chr8g0366051 | 96.429 | 84 | 3 | 0 | 138 | 221 | 14 | 97 | 1.63e-49 | 162 |
Msa1197340 | MtrunA17_Chr8g0366041 | 81.308 | 107 | 13 | 2 | 1 | 100 | 115 | 221 | 3.18e-48 | 163 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1197340 | AT4G29750.1 | 48.590 | 461 | 164 | 7 | 8 | 395 | 360 | 820 | 6.28e-128 | 389 |
Msa1197340 | AT4G29750.2 | 48.791 | 455 | 160 | 7 | 8 | 389 | 360 | 814 | 3.92e-127 | 386 |
Msa1197340 | AT4G14510.1 | 40.700 | 457 | 173 | 6 | 29 | 388 | 373 | 828 | 7.32e-96 | 306 |
Msa1197340 | AT3G23070.1 | 42.080 | 423 | 172 | 7 | 38 | 389 | 382 | 802 | 7.59e-96 | 306 |
Msa1197340 | AT3G18390.1 | 38.795 | 415 | 180 | 5 | 17 | 363 | 384 | 792 | 9.32e-79 | 259 |
Msa1197340 | AT3G01370.1 | 37.681 | 414 | 182 | 9 | 29 | 375 | 328 | 732 | 1.58e-66 | 228 |
Msa1197340 | AT5G16180.1 | 33.738 | 412 | 196 | 7 | 29 | 368 | 311 | 717 | 1.81e-56 | 197 |
Msa1197340 | AT5G16180.2 | 50.000 | 116 | 52 | 1 | 29 | 138 | 311 | 426 | 1.89e-26 | 111 |
Find 108 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCGTGACAACAAGCTTT+TGG | 0.215837 | 8_1:-47627002 | None:intergenic |
CACGATAAATAATTATTATA+TGG | 0.271438 | 8_1:-47626946 | None:intergenic |
TTCCCAACTTCTTGTTTACT+TGG | 0.294491 | 8_1:-47626338 | None:intergenic |
CTTTCTCTTCCTCGTCTTGT+TGG | 0.296198 | 8_1:-47626202 | None:intergenic |
ATGAAGCCATACTTACTTCT+AGG | 0.301568 | 8_1:+47626660 | Msa1197340:CDS |
TAAGCATATTGCGATATCTT+TGG | 0.302210 | 8_1:+47626874 | Msa1197340:CDS |
ACACCATATATCAGATTTAC+AGG | 0.309479 | 8_1:+47627152 | Msa1197340:CDS |
CAATTACCCGCTGTTGTTCC+AGG | 0.315816 | 8_1:+47623090 | Msa1197340:CDS |
ATATATGTAAATATTTATTT+CGG | 0.328361 | 8_1:+47627825 | Msa1197340:three_prime_UTR |
CATGACAGTCATTTCCTTGT+TGG | 0.330729 | 8_1:-47623163 | None:intergenic |
CAGATCTTTGTTTAGGAAGA+TGG | 0.333761 | 8_1:+47626629 | Msa1197340:CDS |
AGCAGACCTTCCAACTGATT+TGG | 0.336227 | 8_1:+47626587 | Msa1197340:CDS |
ATGAAGACAGATCTTTGTTT+AGG | 0.339314 | 8_1:+47626622 | Msa1197340:CDS |
TCTCCTGTAAATCTGATATA+TGG | 0.341489 | 8_1:-47627155 | None:intergenic |
CAACTTCTTGTTTACTTGGT+TGG | 0.351696 | 8_1:-47626334 | None:intergenic |
AAATCAGTTGGAAGGTCTGC+TGG | 0.363738 | 8_1:-47626585 | None:intergenic |
CATCCTATCATTAGATGTAT+AGG | 0.369558 | 8_1:-47623404 | None:intergenic |
TCTCAAATGTCGTTACTTGC+TGG | 0.369690 | 8_1:+47626269 | Msa1197340:CDS |
TGGGTCCGCGCTTCAAAGAT+TGG | 0.371657 | 8_1:+47623034 | Msa1197340:CDS |
TAGGGCAGCAACTGCCAATT+GGG | 0.376038 | 8_1:+47626307 | Msa1197340:CDS |
TTCTTACCTAGAAGTAAGTA+TGG | 0.393391 | 8_1:-47626666 | None:intergenic |
TTTCCTATACATCTAATGAT+AGG | 0.413642 | 8_1:+47623401 | Msa1197340:CDS |
TTTCGGTATAAGAATGATGA+AGG | 0.419967 | 8_1:+47627842 | Msa1197340:three_prime_UTR |
ACTTGGTTGGTGTCCCCAAT+TGG | 0.422589 | 8_1:-47626321 | None:intergenic |
ATATCGCAATATGCTTAACT+TGG | 0.431744 | 8_1:-47626868 | None:intergenic |
CTAGGGCAGCAACTGCCAAT+TGG | 0.434365 | 8_1:+47626306 | Msa1197340:CDS |
GAAGGATTTAGCTAAAATAC+AGG | 0.450289 | 8_1:+47626551 | Msa1197340:CDS |
CAACCAAGTAAACAAGAAGT+TGG | 0.453475 | 8_1:+47626335 | Msa1197340:CDS |
TATGAGTGAAGAAGAATCAA+TGG | 0.453532 | 8_1:+47622978 | Msa1197340:CDS |
CACTCAGACTTCTTCCGTAT+GGG | 0.458328 | 8_1:+47623124 | Msa1197340:intron |
TATAGGCAAAAGCAAGGTTA+AGG | 0.458836 | 8_1:+47626520 | Msa1197340:intron |
ATTTCACAGGTTACATCACT+TGG | 0.465515 | 8_1:-47627797 | None:intergenic |
AAGCTTGTTGTCACGAAGAC+AGG | 0.466888 | 8_1:+47627006 | Msa1197340:CDS |
AATAATTATTATATGGCCCT+TGG | 0.473196 | 8_1:-47626939 | None:intergenic |
TGGAACCCTTGCTGAGACTA+GGG | 0.474177 | 8_1:+47626289 | Msa1197340:CDS |
CTATTTGACTTGAGCATCAT+GGG | 0.476463 | 8_1:+47627640 | Msa1197340:three_prime_UTR |
GCTATTTGACTTGAGCATCA+TGG | 0.476957 | 8_1:+47627639 | Msa1197340:three_prime_UTR |
AGATCTTTGTTTAGGAAGAT+GGG | 0.477491 | 8_1:+47626630 | Msa1197340:CDS |
CCAGTGTCGAGTACAGAATC+TGG | 0.477521 | 8_1:-47627330 | None:intergenic |
CTGGAACCCTTGCTGAGACT+AGG | 0.478799 | 8_1:+47626288 | Msa1197340:CDS |
AGACTCTGCAGAGTATTTGA+AGG | 0.479473 | 8_1:+47622954 | Msa1197340:CDS |
AAATTGCAAGCACCTGGTAT+TGG | 0.484579 | 8_1:-47627410 | None:intergenic |
TCTCGATTAAAAGATTCAAC+AGG | 0.488740 | 8_1:-47622934 | None:intergenic |
ACGGCGCCGCACTTTGCCCT+TGG | 0.488842 | 8_1:+47623204 | Msa1197340:CDS |
GGTAATTGATCAGCATCAAC+AGG | 0.493654 | 8_1:-47623075 | None:intergenic |
TGATCAGCATCAACAGGTAA+AGG | 0.496292 | 8_1:-47623069 | None:intergenic |
ACTGTGAAGATAAACAATAA+TGG | 0.503171 | 8_1:+47627665 | Msa1197340:three_prime_UTR |
AACCAAGTAAACAAGAAGTT+GGG | 0.504260 | 8_1:+47626336 | Msa1197340:CDS |
GTTAATGTCTCCAAATCAGT+TGG | 0.506886 | 8_1:-47626597 | None:intergenic |
GACCCAACTCATCTAACAAA+AGG | 0.510309 | 8_1:-47623017 | None:intergenic |
CATATAATAATTATTTATCG+TGG | 0.512686 | 8_1:+47626947 | Msa1197340:CDS |
ACATATATTAACCATTTCAC+AGG | 0.517083 | 8_1:-47627810 | None:intergenic |
GGAAGAAATAGAGAACTTCA+AGG | 0.517965 | 8_1:+47623310 | Msa1197340:intron |
TTTCACAGGTTACATCACTT+GGG | 0.518906 | 8_1:-47627796 | None:intergenic |
TCACTCAGACTTCTTCCGTA+TGG | 0.526758 | 8_1:+47623123 | Msa1197340:intron |
AAGTGATGTAACCTGTGAAA+TGG | 0.530804 | 8_1:+47627799 | Msa1197340:three_prime_UTR |
TTATACCCTGGAACAACAGC+GGG | 0.534729 | 8_1:-47623096 | None:intergenic |
CTATACATCTAATGATAGGA+TGG | 0.535528 | 8_1:+47623405 | Msa1197340:CDS |
AAACAAGGTTTCACCCCATA+CGG | 0.539368 | 8_1:-47623138 | None:intergenic |
GTTCCATGTGACACATCAAA+AGG | 0.549282 | 8_1:-47627720 | None:intergenic |
CCGCGCTTCAAAGATTGGAC+AGG | 0.551893 | 8_1:+47623039 | Msa1197340:CDS |
TTCACAGGTTACATCACTTG+GGG | 0.554569 | 8_1:-47627795 | None:intergenic |
CTTTGGAAGCTGAGAGTGGT+GGG | 0.555129 | 8_1:+47626891 | Msa1197340:CDS |
TTTAGTAAATTGCAAGCACC+TGG | 0.558197 | 8_1:-47627416 | None:intergenic |
TTCCTCGTCTTGTTGGAGAA+CGG | 0.558618 | 8_1:-47626195 | None:intergenic |
AAGCACCTGGTATTGGTCTA+CGG | 0.559721 | 8_1:-47627403 | None:intergenic |
GTTGTCACGAAGACAGGCAT+TGG | 0.566651 | 8_1:+47627012 | Msa1197340:CDS |
AATGATAAGAGAATCTACCT+TGG | 0.566847 | 8_1:+47626361 | Msa1197340:CDS |
ATATAATAATTATTTATCGT+GGG | 0.568217 | 8_1:+47626948 | Msa1197340:CDS |
TCTTTGGAAGCTGAGAGTGG+TGG | 0.568769 | 8_1:+47626890 | Msa1197340:CDS |
AATTACCCGCTGTTGTTCCA+GGG | 0.571119 | 8_1:+47623091 | Msa1197340:CDS |
TGCTGCCCTAGTCTCAGCAA+GGG | 0.571168 | 8_1:-47626294 | None:intergenic |
TTGCTGCCCTAGTCTCAGCA+AGG | 0.572524 | 8_1:-47626295 | None:intergenic |
AATCAGTTGGAAGGTCTGCT+GGG | 0.575969 | 8_1:-47626584 | None:intergenic |
CCAGATTCTGTACTCGACAC+TGG | 0.576638 | 8_1:+47627330 | Msa1197340:CDS |
ATCTGTAGACAAGGATACCA+AGG | 0.577769 | 8_1:+47626922 | Msa1197340:CDS |
TATCGCAATATGCTTAACTT+GGG | 0.578620 | 8_1:-47626867 | None:intergenic |
ATGTCTCCAAATCAGTTGGA+AGG | 0.588053 | 8_1:-47626593 | None:intergenic |
AAGGTTAAGGAAGTCTGAGA+AGG | 0.588795 | 8_1:+47626533 | Msa1197340:CDS |
TGGGTCTCATAACCTGTGGA+CGG | 0.596006 | 8_1:-47626982 | None:intergenic |
TAGGATGGCTGAAGAACTCA+AGG | 0.601557 | 8_1:+47623420 | Msa1197340:CDS |
TAAAGAAGCTAGTCTATCCA+AGG | 0.601606 | 8_1:-47626378 | None:intergenic |
CTAGAGCTATAGTAAAGCTG+TGG | 0.601734 | 8_1:+47623338 | Msa1197340:CDS |
TAGAGCTATAGTAAAGCTGT+GGG | 0.602614 | 8_1:+47623339 | Msa1197340:CDS |
ATTTCCTTGTTGGATAAACA+AGG | 0.603660 | 8_1:-47623153 | None:intergenic |
ACTCAGACTTCTTCCGTATG+GGG | 0.604233 | 8_1:+47623125 | Msa1197340:intron |
TATGATTATAGGCAAAAGCA+AGG | 0.604886 | 8_1:+47626514 | Msa1197340:intron |
ATGTGACACATCAAAAGGCA+TGG | 0.616042 | 8_1:-47627715 | None:intergenic |
CATCAACAGGTAAAGGCTCA+CGG | 0.617823 | 8_1:-47623062 | None:intergenic |
AGGAAATGACTGTCATGCGT+AGG | 0.623211 | 8_1:+47623169 | Msa1197340:CDS |
GTAAGTGTGAAAGAAATGGT+TGG | 0.627154 | 8_1:+47622910 | None:intergenic |
TGCATACCAAGGGCAAAGTG+CGG | 0.628833 | 8_1:-47623210 | None:intergenic |
AGATTTCTATCCAATGTCGT+AGG | 0.634292 | 8_1:+47627767 | Msa1197340:three_prime_UTR |
GCGTAGGATTGCTAGAAGAA+CGG | 0.641061 | 8_1:+47623185 | Msa1197340:CDS |
AGTCATCATGAGAAGAAACA+TGG | 0.641416 | 8_1:-47627360 | None:intergenic |
AACCGTTCTCCAACAAGACG+AGG | 0.648727 | 8_1:+47626193 | Msa1197340:CDS |
GAAGAACTACTTCCGTCCAC+AGG | 0.649230 | 8_1:+47626970 | Msa1197340:CDS |
TTTGGAAGCTGAGAGTGGTG+GGG | 0.660912 | 8_1:+47626892 | Msa1197340:CDS |
AGGGCAGCAACTGCCAATTG+GGG | 0.661841 | 8_1:+47626308 | Msa1197340:CDS |
GAAACCTTGTTTATCCAACA+AGG | 0.665865 | 8_1:+47623149 | Msa1197340:CDS |
GGTGCTGATATCTGTAGACA+AGG | 0.666036 | 8_1:+47626913 | Msa1197340:CDS |
TCACAGGTTACATCACTTGG+GGG | 0.676221 | 8_1:-47627794 | None:intergenic |
CCTGTCCAATCTTTGAAGCG+CGG | 0.681196 | 8_1:-47623039 | None:intergenic |
TTTATACCCTGGAACAACAG+CGG | 0.682655 | 8_1:-47623097 | None:intergenic |
TATTGAGCTTCAAAGACGAG+AGG | 0.684121 | 8_1:+47627042 | Msa1197340:CDS |
TCTGTAGACAAGGATACCAA+GGG | 0.692088 | 8_1:+47626923 | Msa1197340:CDS |
ATATCTTTGGAAGCTGAGAG+TGG | 0.692298 | 8_1:+47626887 | Msa1197340:CDS |
AAGGATTTAGCTAAAATACA+GGG | 0.697797 | 8_1:+47626552 | Msa1197340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAATAATTATTTATCGT+GGG | + | chr8_1:47626948-47626967 | Msa1197340:CDS | 10.0% |
!!! | TTAGTCTTATGATATAATAT+TGG | - | chr8_1:47624483-47624502 | None:intergenic | 15.0% |
!!! | AATCAAACAAAATTTTTCAT+GGG | - | chr8_1:47625031-47625050 | None:intergenic | 15.0% |
!!! | TAATCAAACAAAATTTTTCA+TGG | - | chr8_1:47625032-47625051 | None:intergenic | 15.0% |
!! | TTTATAAAGTTAGATAGATA+TGG | - | chr8_1:47626486-47626505 | None:intergenic | 15.0% |
!! | CACGATAAATAATTATTATA+TGG | - | chr8_1:47626949-47626968 | None:intergenic | 15.0% |
!! | CATATAATAATTATTTATCG+TGG | + | chr8_1:47626947-47626966 | Msa1197340:CDS | 15.0% |
!! | ATATTGCTACTAAATATTAT+TGG | - | chr8_1:47627461-47627480 | None:intergenic | 15.0% |
!!! | GTAAAGAATAGTAAATCTTT+TGG | - | chr8_1:47623277-47623296 | None:intergenic | 20.0% |
!! | AAAGATTTACTATTCTTTAC+TGG | + | chr8_1:47623277-47623296 | Msa1197340:intron | 20.0% |
!!! | AGAATTTTATCATGCTTAAA+AGG | + | chr8_1:47623499-47623518 | Msa1197340:intron | 20.0% |
!!! | GATAGTTTTTGAATGATTTT+GGG | - | chr8_1:47624040-47624059 | None:intergenic | 20.0% |
!!! | AGATAGTTTTTGAATGATTT+TGG | - | chr8_1:47624041-47624060 | None:intergenic | 20.0% |
!!! | TGTCAGTTATGTTTAATTTT+AGG | - | chr8_1:47624099-47624118 | None:intergenic | 20.0% |
!! | ATACTTAGGTTTATATGTTA+TGG | - | chr8_1:47624146-47624165 | None:intergenic | 20.0% |
!!! | TTATTAACTTTTTATGTCAG+TGG | - | chr8_1:47624239-47624258 | None:intergenic | 20.0% |
!! | TTCTATATGTAGAAAGAAAT+AGG | + | chr8_1:47624336-47624355 | Msa1197340:intron | 20.0% |
!! | TCTATATGTAGAAAGAAATA+GGG | + | chr8_1:47624337-47624356 | Msa1197340:intron | 20.0% |
!!! | TTTTCTATTGTAACATTATC+AGG | + | chr8_1:47624719-47624738 | Msa1197340:intron | 20.0% |
!! | TTTCTATTGTAACATTATCA+GGG | + | chr8_1:47624720-47624739 | Msa1197340:intron | 20.0% |
!!! | ATAATGTGATTTTATACAAG+CGG | - | chr8_1:47624856-47624875 | None:intergenic | 20.0% |
!! | CTTGTATAAAATCACATTAT+AGG | + | chr8_1:47624856-47624875 | Msa1197340:intron | 20.0% |
!! | AAAAAAAGTCAGAACAATAT+GGG | - | chr8_1:47624994-47625013 | None:intergenic | 20.0% |
!! | TAAAAAAAGTCAGAACAATA+TGG | - | chr8_1:47624995-47625014 | None:intergenic | 20.0% |
!!! | TGACTTTTTTTATTGAGTTT+TGG | + | chr8_1:47625003-47625022 | Msa1197340:intron | 20.0% |
!!! | GACTTTTTTTATTGAGTTTT+GGG | + | chr8_1:47625004-47625023 | Msa1197340:intron | 20.0% |
!! | ATGATAAATTATGAACAAGA+AGG | - | chr8_1:47625186-47625205 | None:intergenic | 20.0% |
!! | TCTTTGCTTGATTAAAATAA+AGG | - | chr8_1:47625296-47625315 | None:intergenic | 20.0% |
!! | AACAAAGGTAAAATAAAATG+TGG | + | chr8_1:47625403-47625422 | Msa1197340:intron | 20.0% |
!!! | TAATTTTTCACACATTCATA+GGG | - | chr8_1:47625509-47625528 | None:intergenic | 20.0% |
!! | TGTATTAAGCTTAATATTGA+TGG | - | chr8_1:47625823-47625842 | None:intergenic | 20.0% |
!! | AGGAATATATTGTAATTTAC+AGG | + | chr8_1:47626114-47626133 | Msa1197340:intron | 20.0% |
!! | GGAATATATTGTAATTTACA+GGG | + | chr8_1:47626115-47626134 | Msa1197340:intron | 20.0% |
!! | GAATATATTGTAATTTACAG+GGG | + | chr8_1:47626116-47626135 | Msa1197340:intron | 20.0% |
!!! | AGTTTCTAAATTTTCTTTTC+AGG | + | chr8_1:47627122-47627141 | Msa1197340:intron | 20.0% |
! | TTTCCTATACATCTAATGAT+AGG | + | chr8_1:47623401-47623420 | Msa1197340:CDS | 25.0% |
!! | TAATATTGTCCAATTTCTAG+CGG | - | chr8_1:47623459-47623478 | None:intergenic | 25.0% |
! | TTCTTGTAAATGAGAATATC+AGG | + | chr8_1:47623599-47623618 | Msa1197340:intron | 25.0% |
! | TCTTGTAAATGAGAATATCA+GGG | + | chr8_1:47623600-47623619 | Msa1197340:intron | 25.0% |
! | GCATTAGACAAAAGTTTAAT+GGG | - | chr8_1:47623645-47623664 | None:intergenic | 25.0% |
! | TGCATTAGACAAAAGTTTAA+TGG | - | chr8_1:47623646-47623665 | None:intergenic | 25.0% |
!!! | CATGTCTCATTTTTATTGAT+CGG | - | chr8_1:47623697-47623716 | None:intergenic | 25.0% |
!! | TTTTCATCTGAAAATAGCAA+AGG | + | chr8_1:47623759-47623778 | Msa1197340:intron | 25.0% |
! | ACATTTATCAGAAAATGAAG+TGG | - | chr8_1:47623793-47623812 | None:intergenic | 25.0% |
!!! | GTAGAAACTGACTTTTTTTA+TGG | + | chr8_1:47623868-47623887 | Msa1197340:intron | 25.0% |
! | TAATATACTTTACAGCATAC+AGG | + | chr8_1:47623972-47623991 | Msa1197340:intron | 25.0% |
!! | ATAAGCATGATATATTTTCC+TGG | + | chr8_1:47624299-47624318 | Msa1197340:intron | 25.0% |
!! | TAAGCATGATATATTTTCCT+GGG | + | chr8_1:47624300-47624319 | Msa1197340:intron | 25.0% |
! | ACTAAAAAGAGATAGAATCA+TGG | + | chr8_1:47624451-47624470 | Msa1197340:intron | 25.0% |
!! | AGTTTTTCGCAATTTAGAAA+GGG | - | chr8_1:47624762-47624781 | None:intergenic | 25.0% |
! | GTATAAAATCACATTATAGG+TGG | + | chr8_1:47624859-47624878 | Msa1197340:intron | 25.0% |
! | AAAAAAGTCAGAACAATATG+GGG | - | chr8_1:47624993-47625012 | None:intergenic | 25.0% |
! | GTTTGATTAATAATACCCAA+AGG | + | chr8_1:47625043-47625062 | Msa1197340:intron | 25.0% |
!! | TTTGTAGTATTCATGCATTT+TGG | + | chr8_1:47625084-47625103 | Msa1197340:intron | 25.0% |
! | CTTGTTCATAATTTATCATG+TGG | + | chr8_1:47625187-47625206 | Msa1197340:intron | 25.0% |
! | TGTTCCTTTCTTTAAACTTA+TGG | + | chr8_1:47625230-47625249 | Msa1197340:intron | 25.0% |
! | AACACCATAAGTTTAAAGAA+AGG | - | chr8_1:47625237-47625256 | None:intergenic | 25.0% |
! | TTGTTACAAAGAGATAGTAT+AGG | - | chr8_1:47625388-47625407 | None:intergenic | 25.0% |
! | ATACTATCTCTTTGTAACAA+AGG | + | chr8_1:47625388-47625407 | Msa1197340:intron | 25.0% |
! | AAAGGTAAAATAAAATGTGG+TGG | + | chr8_1:47625406-47625425 | Msa1197340:intron | 25.0% |
!! | GTAATTTTTCACACATTCAT+AGG | - | chr8_1:47625510-47625529 | None:intergenic | 25.0% |
!!! | GATTGGGAGAATAATTTTTT+GGG | - | chr8_1:47625751-47625770 | None:intergenic | 25.0% |
!!! | AGATTGGGAGAATAATTTTT+TGG | - | chr8_1:47625752-47625771 | None:intergenic | 25.0% |
! | AAAAATTATTCTCCCAATCT+CGG | + | chr8_1:47625752-47625771 | Msa1197340:intron | 25.0% |
! | CTCATATTATTTGGCAAATA+TGG | - | chr8_1:47626065-47626084 | None:intergenic | 25.0% |
!! | ATTCCTTATTTCAGAAAGTA+AGG | - | chr8_1:47626100-47626119 | None:intergenic | 25.0% |
! | AAGGATTTAGCTAAAATACA+GGG | + | chr8_1:47626552-47626571 | Msa1197340:CDS | 25.0% |
!! | ATGTAGATGAATGTTTTCTA+TGG | - | chr8_1:47626799-47626818 | None:intergenic | 25.0% |
! | TAGAAAACATTCATCTACAT+TGG | + | chr8_1:47626799-47626818 | Msa1197340:intron | 25.0% |
! | TTGGTAAAAATACTTGTGAA+AGG | + | chr8_1:47626833-47626852 | Msa1197340:intron | 25.0% |
! | TGGTAAAAATACTTGTGAAA+GGG | + | chr8_1:47626834-47626853 | Msa1197340:intron | 25.0% |
! | AATAATTATTATATGGCCCT+TGG | - | chr8_1:47626942-47626961 | None:intergenic | 25.0% |
!! | TTACTCTGCTGTAATAATTT+TGG | + | chr8_1:47627228-47627247 | Msa1197340:intron | 25.0% |
!!! | AGTTTTTTGTTGTTGATTTC+AGG | + | chr8_1:47627273-47627292 | Msa1197340:intron | 25.0% |
! | AAAAATCAAAAGGTGATTGA+TGG | + | chr8_1:47627304-47627323 | Msa1197340:CDS | 25.0% |
! | GCTACTAAATATTATTGGTA+AGG | - | chr8_1:47627456-47627475 | None:intergenic | 25.0% |
!! | TTTTTCCAAAGAGAATAATG+GGG | - | chr8_1:47627548-47627567 | None:intergenic | 25.0% |
!! | GTTTTTCCAAAGAGAATAAT+GGG | - | chr8_1:47627549-47627568 | None:intergenic | 25.0% |
!! | AGTTTTTCCAAAGAGAATAA+TGG | - | chr8_1:47627550-47627569 | None:intergenic | 25.0% |
!!! | ATTCATTTTGATAAAGACGA+CGG | + | chr8_1:47627586-47627605 | Msa1197340:three_prime_UTR | 25.0% |
! | ACTGTGAAGATAAACAATAA+TGG | + | chr8_1:47627665-47627684 | Msa1197340:three_prime_UTR | 25.0% |
! | ACATATATTAACCATTTCAC+AGG | - | chr8_1:47627813-47627832 | None:intergenic | 25.0% |
TCTCGATTAAAAGATTCAAC+AGG | - | chr8_1:47622937-47622956 | None:intergenic | 30.0% | |
TATGAGTGAAGAAGAATCAA+TGG | + | chr8_1:47622978-47622997 | Msa1197340:CDS | 30.0% | |
! | AACCTTTTGTTAGATGAGTT+GGG | + | chr8_1:47623015-47623034 | Msa1197340:CDS | 30.0% |
ATTTCCTTGTTGGATAAACA+AGG | - | chr8_1:47623156-47623175 | None:intergenic | 30.0% | |
CATCCTATCATTAGATGTAT+AGG | - | chr8_1:47623407-47623426 | None:intergenic | 30.0% | |
CTATACATCTAATGATAGGA+TGG | + | chr8_1:47623405-47623424 | Msa1197340:CDS | 30.0% | |
AGAATATCAGGGATAAGATT+AGG | + | chr8_1:47623611-47623630 | Msa1197340:intron | 30.0% | |
CAATTGAAACATGAGCATAT+AGG | + | chr8_1:47623667-47623686 | Msa1197340:intron | 30.0% | |
TAAAGTGTATCTGACTTATC+TGG | + | chr8_1:47623727-47623746 | Msa1197340:intron | 30.0% | |
GTTTCTAACACGATGATAAA+AGG | - | chr8_1:47623825-47623844 | None:intergenic | 30.0% | |
! | TCTACAGCTAAATCGTATTT+TGG | - | chr8_1:47623853-47623872 | None:intergenic | 30.0% |
!! | GTTTTTGAATGATTTTGGGA+GGG | - | chr8_1:47624036-47624055 | None:intergenic | 30.0% |
! | AGTTTTTGAATGATTTTGGG+AGG | - | chr8_1:47624037-47624056 | None:intergenic | 30.0% |
GGAATAAATCAAGCAATGTA+AGG | - | chr8_1:47624078-47624097 | None:intergenic | 30.0% | |
AACAACAATGTGTGATACTT+AGG | - | chr8_1:47624160-47624179 | None:intergenic | 30.0% | |
AAGCGAGTTTAAAGATTTCA+GGG | + | chr8_1:47624192-47624211 | Msa1197340:intron | 30.0% | |
AGAATATTGTTTATCTACCC+AGG | - | chr8_1:47624320-47624339 | None:intergenic | 30.0% | |
ATGCTATTATGTTTATTCCG+CGG | + | chr8_1:47624363-47624382 | Msa1197340:intron | 30.0% | |
! | GTTTTTCGCAATTTAGAAAG+GGG | - | chr8_1:47624761-47624780 | None:intergenic | 30.0% |
! | GAGTTTTTCGCAATTTAGAA+AGG | - | chr8_1:47624763-47624782 | None:intergenic | 30.0% |
TCTAAATTGCGAAAAACTCT+TGG | + | chr8_1:47624764-47624783 | Msa1197340:intron | 30.0% | |
TTATAGGTGGTCTATATTCA+CGG | + | chr8_1:47624872-47624891 | Msa1197340:intron | 30.0% | |
! | TCACGGTTTGATAATATTCA+TGG | + | chr8_1:47624889-47624908 | Msa1197340:intron | 30.0% |
! | CACGGTTTGATAATATTCAT+GGG | + | chr8_1:47624890-47624909 | Msa1197340:intron | 30.0% |
ATAGTTGCATACAATCCTTT+GGG | - | chr8_1:47625061-47625080 | None:intergenic | 30.0% | |
TATAGTTGCATACAATCCTT+TGG | - | chr8_1:47625062-47625081 | None:intergenic | 30.0% | |
TCTTACGAGACTTAGAAATA+AGG | - | chr8_1:47625120-47625139 | None:intergenic | 30.0% | |
AGCAAAGAAATCTATAAACC+AGG | + | chr8_1:47625308-47625327 | Msa1197340:intron | 30.0% | |
!! | AAAATAAAATGTGGTGGATC+TGG | + | chr8_1:47625412-47625431 | Msa1197340:intron | 30.0% |
TAATAGATGCTTTCAAGACA+AGG | - | chr8_1:47626031-47626050 | None:intergenic | 30.0% | |
!! | GAACCTTACTTTCTGAAATA+AGG | + | chr8_1:47626094-47626113 | Msa1197340:intron | 30.0% |
AACCAAGTAAACAAGAAGTT+GGG | + | chr8_1:47626336-47626355 | Msa1197340:CDS | 30.0% | |
AATGATAAGAGAATCTACCT+TGG | + | chr8_1:47626361-47626380 | Msa1197340:CDS | 30.0% | |
! | ATTTGGGAAGTTATTTCAGT+TGG | - | chr8_1:47626449-47626468 | None:intergenic | 30.0% |
GGTAACAACAGATAGTATTT+GGG | - | chr8_1:47626465-47626484 | None:intergenic | 30.0% | |
TGGTAACAACAGATAGTATT+TGG | - | chr8_1:47626466-47626485 | None:intergenic | 30.0% | |
TATGATTATAGGCAAAAGCA+AGG | + | chr8_1:47626514-47626533 | Msa1197340:intron | 30.0% | |
GAAGGATTTAGCTAAAATAC+AGG | + | chr8_1:47626551-47626570 | Msa1197340:CDS | 30.0% | |
! | ATGAAGACAGATCTTTGTTT+AGG | + | chr8_1:47626622-47626641 | Msa1197340:CDS | 30.0% |
! | AGATCTTTGTTTAGGAAGAT+GGG | + | chr8_1:47626630-47626649 | Msa1197340:CDS | 30.0% |
TTCTTACCTAGAAGTAAGTA+TGG | - | chr8_1:47626669-47626688 | None:intergenic | 30.0% | |
!! | GTTAAAAGCATGAGATTTTC+AGG | + | chr8_1:47626750-47626769 | Msa1197340:intron | 30.0% |
TACATTGGAAATATTCCAGT+TGG | + | chr8_1:47626814-47626833 | Msa1197340:intron | 30.0% | |
!! | TCACAAGTATTTTTACCAAC+TGG | - | chr8_1:47626832-47626851 | None:intergenic | 30.0% |
TATCGCAATATGCTTAACTT+GGG | - | chr8_1:47626870-47626889 | None:intergenic | 30.0% | |
ATATCGCAATATGCTTAACT+TGG | - | chr8_1:47626871-47626890 | None:intergenic | 30.0% | |
TAAGCATATTGCGATATCTT+TGG | + | chr8_1:47626874-47626893 | Msa1197340:CDS | 30.0% | |
ACACCATATATCAGATTTAC+AGG | + | chr8_1:47627152-47627171 | Msa1197340:CDS | 30.0% | |
TCTCCTGTAAATCTGATATA+TGG | - | chr8_1:47627158-47627177 | None:intergenic | 30.0% | |
!!! | CTGCTGTAATAATTTTGGTT+TGG | + | chr8_1:47627233-47627252 | Msa1197340:intron | 30.0% |
!!! | TTTTTGTTGTTGATTTCAGG+AGG | + | chr8_1:47627276-47627295 | Msa1197340:intron | 30.0% |
GGAGGATATGAAAAATCAAA+AGG | + | chr8_1:47627294-47627313 | Msa1197340:intron | 30.0% | |
GCAAAAAAATAAGAGGAACA+AGG | - | chr8_1:47627526-47627545 | None:intergenic | 30.0% | |
TAATGGGGCAAAAAAATAAG+AGG | - | chr8_1:47627533-47627552 | None:intergenic | 30.0% | |
! | CTTTGGAAAAACTAGAATGA+AGG | + | chr8_1:47627557-47627576 | Msa1197340:intron | 30.0% |
TTTCGGTATAAGAATGATGA+AGG | + | chr8_1:47627842-47627861 | Msa1197340:three_prime_UTR | 30.0% | |
! | CAACCTTTTGTTAGATGAGT+TGG | + | chr8_1:47623014-47623033 | Msa1197340:CDS | 35.0% |
! | GAAACCTTGTTTATCCAACA+AGG | + | chr8_1:47623149-47623168 | Msa1197340:CDS | 35.0% |
GGAAGAAATAGAGAACTTCA+AGG | + | chr8_1:47623310-47623329 | Msa1197340:intron | 35.0% | |
TAGAGCTATAGTAAAGCTGT+GGG | + | chr8_1:47623339-47623358 | Msa1197340:CDS | 35.0% | |
GCAAAAATAGTCATCAATCG+TGG | + | chr8_1:47623376-47623395 | Msa1197340:CDS | 35.0% | |
TCTCATAAACCGCTAGAAAT+TGG | + | chr8_1:47623447-47623466 | Msa1197340:intron | 35.0% | |
TATAAAACAACCCATCTGTG+TGG | + | chr8_1:47623524-47623543 | Msa1197340:intron | 35.0% | |
CAGAATTCACACACAAACTA+AGG | + | chr8_1:47623942-47623961 | Msa1197340:intron | 35.0% | |
CAAGCGAGTTTAAAGATTTC+AGG | + | chr8_1:47624191-47624210 | Msa1197340:intron | 35.0% | |
AATCAGATGACCTAAGTCAA+TGG | + | chr8_1:47624614-47624633 | Msa1197340:intron | 35.0% | |
ATGACCTAAGTCAATGGAAT+AGG | + | chr8_1:47624620-47624639 | Msa1197340:intron | 35.0% | |
CATAATGTGTGTGACTTTCA+TGG | + | chr8_1:47624655-47624674 | Msa1197340:intron | 35.0% | |
! | TGTGATTTTATACAAGCGGT+GGG | - | chr8_1:47624852-47624871 | None:intergenic | 35.0% |
! | ATGTGATTTTATACAAGCGG+TGG | - | chr8_1:47624853-47624872 | None:intergenic | 35.0% |
!! | AAGTGATTTGCTGCTATTGA+AGG | + | chr8_1:47624938-47624957 | Msa1197340:intron | 35.0% |
TACGAGACTTAGAAATAAGG+TGG | - | chr8_1:47625117-47625136 | None:intergenic | 35.0% | |
ATGCATTTGCAGAAATTGAC+CGG | + | chr8_1:47625265-47625284 | Msa1197340:intron | 35.0% | |
AGAAATCTATAAACCAGGAG+AGG | + | chr8_1:47625313-47625332 | Msa1197340:intron | 35.0% | |
! | TTTTCACACATTCATAGGGA+GGG | - | chr8_1:47625505-47625524 | None:intergenic | 35.0% |
! | TTTTTCACACATTCATAGGG+AGG | - | chr8_1:47625506-47625525 | None:intergenic | 35.0% |
! | AAAAGCTTTTAACCATCAGC+TGG | - | chr8_1:47625596-47625615 | None:intergenic | 35.0% |
!! | GATGTTTGCTATAGAGAAAG+CGG | - | chr8_1:47625671-47625690 | None:intergenic | 35.0% |
!!! | TGGGAGAATAATTTTTTGGG+AGG | - | chr8_1:47625748-47625767 | None:intergenic | 35.0% |
! | AATATTGATGGTTCCTCGTT+TGG | - | chr8_1:47625811-47625830 | None:intergenic | 35.0% |
! | GTCTTCTATTTCTTCTGCTA+TGG | - | chr8_1:47625938-47625957 | None:intergenic | 35.0% |
TGCCAAATAATATGAGTGAC+TGG | + | chr8_1:47626069-47626088 | Msa1197340:intron | 35.0% | |
GCCAAATAATATGAGTGACT+GGG | + | chr8_1:47626070-47626089 | Msa1197340:intron | 35.0% | |
CCAAATAATATGAGTGACTG+GGG | + | chr8_1:47626071-47626090 | Msa1197340:intron | 35.0% | |
CAAATAATATGAGTGACTGG+GGG | + | chr8_1:47626072-47626091 | Msa1197340:intron | 35.0% | |
! | TAGTTTTTGTCTCTCAGTCA+GGG | - | chr8_1:47626174-47626193 | None:intergenic | 35.0% |
!! | TTAGTTTTTGTCTCTCAGTC+AGG | - | chr8_1:47626175-47626194 | None:intergenic | 35.0% |
! | CAACTTCTTGTTTACTTGGT+TGG | - | chr8_1:47626337-47626356 | None:intergenic | 35.0% |
CAACCAAGTAAACAAGAAGT+TGG | + | chr8_1:47626335-47626354 | Msa1197340:CDS | 35.0% | |
! | TTCCCAACTTCTTGTTTACT+TGG | - | chr8_1:47626341-47626360 | None:intergenic | 35.0% |
! | TAAAGAAGCTAGTCTATCCA+AGG | - | chr8_1:47626381-47626400 | None:intergenic | 35.0% |
TATAGGCAAAAGCAAGGTTA+AGG | + | chr8_1:47626520-47626539 | Msa1197340:intron | 35.0% | |
GTTAATGTCTCCAAATCAGT+TGG | - | chr8_1:47626600-47626619 | None:intergenic | 35.0% | |
! | CAGATCTTTGTTTAGGAAGA+TGG | + | chr8_1:47626629-47626648 | Msa1197340:CDS | 35.0% |
ATGAAGCCATACTTACTTCT+AGG | + | chr8_1:47626660-47626679 | Msa1197340:CDS | 35.0% | |
!!! | AAAGCATGAGATTTTCAGGT+AGG | + | chr8_1:47626754-47626773 | Msa1197340:intron | 35.0% |
AGTCATCATGAGAAGAAACA+TGG | - | chr8_1:47627363-47627382 | None:intergenic | 35.0% | |
!! | TCTACGGAAAAAGAGTATTC+AGG | - | chr8_1:47627390-47627409 | None:intergenic | 35.0% |
TTTAGTAAATTGCAAGCACC+TGG | - | chr8_1:47627419-47627438 | None:intergenic | 35.0% | |
! | TTTTGCCCCATTATTCTCTT+TGG | + | chr8_1:47627540-47627559 | Msa1197340:intron | 35.0% |
!! | CTATTTGACTTGAGCATCAT+GGG | + | chr8_1:47627640-47627659 | Msa1197340:three_prime_UTR | 35.0% |
AGATTTCTATCCAATGTCGT+AGG | + | chr8_1:47627767-47627786 | Msa1197340:three_prime_UTR | 35.0% | |
TTTCACAGGTTACATCACTT+GGG | - | chr8_1:47627799-47627818 | None:intergenic | 35.0% | |
ATTTCACAGGTTACATCACT+TGG | - | chr8_1:47627800-47627819 | None:intergenic | 35.0% | |
AAGTGATGTAACCTGTGAAA+TGG | + | chr8_1:47627799-47627818 | Msa1197340:three_prime_UTR | 35.0% | |
! | AGACTCTGCAGAGTATTTGA+AGG | + | chr8_1:47622954-47622973 | Msa1197340:CDS | 40.0% |
GACCCAACTCATCTAACAAA+AGG | - | chr8_1:47623020-47623039 | None:intergenic | 40.0% | |
TGATCAGCATCAACAGGTAA+AGG | - | chr8_1:47623072-47623091 | None:intergenic | 40.0% | |
GGTAATTGATCAGCATCAAC+AGG | - | chr8_1:47623078-47623097 | None:intergenic | 40.0% | |
TTTATACCCTGGAACAACAG+CGG | - | chr8_1:47623100-47623119 | None:intergenic | 40.0% | |
! | CTGAGTGATGTTTTATACCC+TGG | - | chr8_1:47623111-47623130 | None:intergenic | 40.0% |
AAACAAGGTTTCACCCCATA+CGG | - | chr8_1:47623141-47623160 | None:intergenic | 40.0% | |
CATGACAGTCATTTCCTTGT+TGG | - | chr8_1:47623166-47623185 | None:intergenic | 40.0% | |
CTAGAGCTATAGTAAAGCTG+TGG | + | chr8_1:47623338-47623357 | Msa1197340:CDS | 40.0% | |
! | ACTCTTTTAGTCAACAGCCA+AGG | - | chr8_1:47623556-47623575 | None:intergenic | 40.0% |
TCCTAGAAATTCGAGAGTCT+TGG | + | chr8_1:47624005-47624024 | Msa1197340:intron | 40.0% | |
ACCAAGACTCTCGAATTTCT+AGG | - | chr8_1:47624009-47624028 | None:intergenic | 40.0% | |
CTACCTAAAACTGCACACAA+CGG | + | chr8_1:47624120-47624139 | Msa1197340:intron | 40.0% | |
TTCAGGGAATTGCCAAAGTT+AGG | + | chr8_1:47624208-47624227 | Msa1197340:intron | 40.0% | |
GTAGTCAATTTGTCTGTGCT+TGG | - | chr8_1:47624268-47624287 | None:intergenic | 40.0% | |
TAAAATATCTCCTTGAGCCG+CGG | - | chr8_1:47624383-47624402 | None:intergenic | 40.0% | |
AACTGATAACACCCAGTTGA+GGG | - | chr8_1:47624522-47624541 | None:intergenic | 40.0% | |
!! | AGTGCCTATTCCATTGACTT+AGG | - | chr8_1:47624627-47624646 | None:intergenic | 40.0% |
!!! | TCATGGTGTCTGCTTTGTTT+TGG | + | chr8_1:47624672-47624691 | Msa1197340:intron | 40.0% |
ACCTACCATACTGTGCTTAT+TGG | + | chr8_1:47624815-47624834 | Msa1197340:intron | 40.0% | |
ACCAATAAGCACAGTATGGT+AGG | - | chr8_1:47624819-47624838 | None:intergenic | 40.0% | |
TCACACCAATAAGCACAGTA+TGG | - | chr8_1:47624823-47624842 | None:intergenic | 40.0% | |
CAATAGCAGCAAATCACTTG+TGG | - | chr8_1:47624937-47624956 | None:intergenic | 40.0% | |
TTGAAGGATAAGCCTGAATG+TGG | + | chr8_1:47624954-47624973 | Msa1197340:intron | 40.0% | |
TGCATTTGCAGAAATTGACC+GGG | + | chr8_1:47625266-47625285 | Msa1197340:intron | 40.0% | |
!! | GATTAAAATAAAGGTGCCCC+CGG | - | chr8_1:47625287-47625306 | None:intergenic | 40.0% |
TCACCATGTAATCTGTTCGT+CGG | - | chr8_1:47625345-47625364 | None:intergenic | 40.0% | |
ATGGTGACAGTCTGGAAAAA+AGG | + | chr8_1:47625358-47625377 | Msa1197340:intron | 40.0% | |
AGTGCAAGCTAGGAAGATTA+AGG | + | chr8_1:47625446-47625465 | Msa1197340:intron | 40.0% | |
AGGAAGATTAAGGCCATTCT+TGG | + | chr8_1:47625456-47625475 | Msa1197340:intron | 40.0% | |
GATTGAGACAGATTCGTTGA+TGG | - | chr8_1:47625623-47625642 | None:intergenic | 40.0% | |
TCAAAACATTGGCCATGCTT+CGG | - | chr8_1:47625719-47625738 | None:intergenic | 40.0% | |
! | GGAGGTTTTGCTCAAAACAT+TGG | - | chr8_1:47625730-47625749 | None:intergenic | 40.0% |
!! | TGGTGTTGTTATCCGAGATT+GGG | - | chr8_1:47625767-47625786 | None:intergenic | 40.0% |
!! | TTGGTGTTGTTATCCGAGAT+TGG | - | chr8_1:47625768-47625787 | None:intergenic | 40.0% |
AGCTTAATACATCCCAAACG+AGG | + | chr8_1:47625832-47625851 | Msa1197340:intron | 40.0% | |
GCTTAATACATCCCAAACGA+GGG | + | chr8_1:47625833-47625852 | Msa1197340:intron | 40.0% | |
CTTAATACATCCCAAACGAG+GGG | + | chr8_1:47625834-47625853 | Msa1197340:intron | 40.0% | |
TTAATACATCCCAAACGAGG+GGG | + | chr8_1:47625835-47625854 | Msa1197340:intron | 40.0% | |
TGTCTGATTAAAGCGTGAGT+GGG | + | chr8_1:47626000-47626019 | Msa1197340:intron | 40.0% | |
CCCCAGTCACTCATATTATT+TGG | - | chr8_1:47626074-47626093 | None:intergenic | 40.0% | |
TCTCAAATGTCGTTACTTGC+TGG | + | chr8_1:47626269-47626288 | Msa1197340:CDS | 40.0% | |
AAGGTTAAGGAAGTCTGAGA+AGG | + | chr8_1:47626533-47626552 | Msa1197340:CDS | 40.0% | |
ATGTCTCCAAATCAGTTGGA+AGG | - | chr8_1:47626596-47626615 | None:intergenic | 40.0% | |
!! | AGCTTTAAACGTAGCTGCTT+TGG | + | chr8_1:47626704-47626723 | Msa1197340:intron | 40.0% |
! | ATATCTTTGGAAGCTGAGAG+TGG | + | chr8_1:47626887-47626906 | Msa1197340:CDS | 40.0% |
ATCTGTAGACAAGGATACCA+AGG | + | chr8_1:47626922-47626941 | Msa1197340:CDS | 40.0% | |
TCTGTAGACAAGGATACCAA+GGG | + | chr8_1:47626923-47626942 | Msa1197340:CDS | 40.0% | |
! | CTTCGTGACAACAAGCTTTT+GGG | - | chr8_1:47627004-47627023 | None:intergenic | 40.0% |
! | TCTTCGTGACAACAAGCTTT+TGG | - | chr8_1:47627005-47627024 | None:intergenic | 40.0% |
TATTGAGCTTCAAAGACGAG+AGG | + | chr8_1:47627042-47627061 | Msa1197340:CDS | 40.0% | |
! | TTTTTCCGTAGACCAATACC+AGG | + | chr8_1:47627398-47627417 | Msa1197340:exon | 40.0% |
AAATTGCAAGCACCTGGTAT+TGG | - | chr8_1:47627413-47627432 | None:intergenic | 40.0% | |
!! | CATTTTGATAAAGACGACGG+TGG | + | chr8_1:47627589-47627608 | Msa1197340:three_prime_UTR | 40.0% |
!! | GCTATTTGACTTGAGCATCA+TGG | + | chr8_1:47627639-47627658 | Msa1197340:three_prime_UTR | 40.0% |
ATGTGACACATCAAAAGGCA+TGG | - | chr8_1:47627718-47627737 | None:intergenic | 40.0% | |
! | ATGCCTTTTGATGTGTCACA+TGG | + | chr8_1:47627717-47627736 | Msa1197340:three_prime_UTR | 40.0% |
GTTCCATGTGACACATCAAA+AGG | - | chr8_1:47627723-47627742 | None:intergenic | 40.0% | |
TTCACAGGTTACATCACTTG+GGG | - | chr8_1:47627798-47627817 | None:intergenic | 40.0% | |
CATCAACAGGTAAAGGCTCA+CGG | - | chr8_1:47623065-47623084 | None:intergenic | 45.0% | |
AATTACCCGCTGTTGTTCCA+GGG | + | chr8_1:47623091-47623110 | Msa1197340:CDS | 45.0% | |
TTATACCCTGGAACAACAGC+GGG | - | chr8_1:47623099-47623118 | None:intergenic | 45.0% | |
TCACTCAGACTTCTTCCGTA+TGG | + | chr8_1:47623123-47623142 | Msa1197340:intron | 45.0% | |
CACTCAGACTTCTTCCGTAT+GGG | + | chr8_1:47623124-47623143 | Msa1197340:intron | 45.0% | |
ACTCAGACTTCTTCCGTATG+GGG | + | chr8_1:47623125-47623144 | Msa1197340:intron | 45.0% | |
AGGAAATGACTGTCATGCGT+AGG | + | chr8_1:47623169-47623188 | Msa1197340:CDS | 45.0% | |
GCGTAGGATTGCTAGAAGAA+CGG | + | chr8_1:47623185-47623204 | Msa1197340:CDS | 45.0% | |
GAGAGCTTCTTGCATACCAA+GGG | - | chr8_1:47623223-47623242 | None:intergenic | 45.0% | |
AGAGAGCTTCTTGCATACCA+AGG | - | chr8_1:47623224-47623243 | None:intergenic | 45.0% | |
TAGGATGGCTGAAGAACTCA+AGG | + | chr8_1:47623420-47623439 | Msa1197340:CDS | 45.0% | |
! | CTTTTAGTCAACAGCCAAGG+AGG | - | chr8_1:47623553-47623572 | None:intergenic | 45.0% |
TCAGTGGCATAGCCTAACTT+TGG | - | chr8_1:47624223-47624242 | None:intergenic | 45.0% | |
TATGTTTATTCCGCGGCTCA+AGG | + | chr8_1:47624370-47624389 | Msa1197340:intron | 45.0% | |
! | GCGGCTCAAGGAGATATTTT+AGG | + | chr8_1:47624382-47624401 | Msa1197340:intron | 45.0% |
TTTGTCAACCTTCCCTCAAC+TGG | + | chr8_1:47624507-47624526 | Msa1197340:intron | 45.0% | |
TTGTCAACCTTCCCTCAACT+GGG | + | chr8_1:47624508-47624527 | Msa1197340:intron | 45.0% | |
CAACTGATAACACCCAGTTG+AGG | - | chr8_1:47624523-47624542 | None:intergenic | 45.0% | |
AGCACAGTATGGTAGGTTCA+AGG | - | chr8_1:47624812-47624831 | None:intergenic | 45.0% | |
TTCATGGGAGTGAGTTGCTA+TGG | + | chr8_1:47624905-47624924 | Msa1197340:intron | 45.0% | |
TGCATGCAAGAACCACATTC+AGG | - | chr8_1:47624969-47624988 | None:intergenic | 45.0% | |
GCATTTGCAGAAATTGACCG+GGG | + | chr8_1:47625267-47625286 | Msa1197340:intron | 45.0% | |
CATTTGCAGAAATTGACCGG+GGG | + | chr8_1:47625268-47625287 | Msa1197340:intron | 45.0% | |
!! | TGTAATCTGTTCGTCGGTTC+AGG | - | chr8_1:47625339-47625358 | None:intergenic | 45.0% |
GAACCGACGAACAGATTACA+TGG | + | chr8_1:47625339-47625358 | Msa1197340:intron | 45.0% | |
CAGATTACATGGTGACAGTC+TGG | + | chr8_1:47625350-47625369 | Msa1197340:intron | 45.0% | |
! | TTCCTAGCTTGCACTCTCAA+TGG | - | chr8_1:47625441-47625460 | None:intergenic | 45.0% |
GCTGATGCTTTAGCCAAGAA+TGG | - | chr8_1:47625472-47625491 | None:intergenic | 45.0% | |
! | AGCTTTTAACCATCAGCTGG+AGG | - | chr8_1:47625593-47625612 | None:intergenic | 45.0% |
! | TGAGACAGATTCGTTGATGG+TGG | - | chr8_1:47625620-47625639 | None:intergenic | 45.0% |
!! | GTTTGCTATAGAGAAAGCGG+TGG | - | chr8_1:47625668-47625687 | None:intergenic | 45.0% |
GTTTGTGGCTGAGTTAAGTG+CGG | - | chr8_1:47625695-47625714 | None:intergenic | 45.0% | |
! | TCAACATCCGCACCCTTTTT+CGG | - | chr8_1:47625912-47625931 | None:intergenic | 45.0% |
CAGAAGAAATAGAAGACCCC+TGG | + | chr8_1:47625941-47625960 | Msa1197340:intron | 45.0% | |
GTGTCTGATTAAAGCGTGAG+TGG | + | chr8_1:47625999-47626018 | Msa1197340:intron | 45.0% | |
GTCTGATTAAAGCGTGAGTG+GGG | + | chr8_1:47626001-47626020 | Msa1197340:intron | 45.0% | |
! | TTGTCTCTCAGTCAGGGTTT+TGG | - | chr8_1:47626168-47626187 | None:intergenic | 45.0% |
! | TTCCTCGTCTTGTTGGAGAA+CGG | - | chr8_1:47626198-47626217 | None:intergenic | 45.0% |
CTTTCTCTTCCTCGTCTTGT+TGG | - | chr8_1:47626205-47626224 | None:intergenic | 45.0% | |
AATCAGTTGGAAGGTCTGCT+GGG | - | chr8_1:47626587-47626606 | None:intergenic | 45.0% | |
AAATCAGTTGGAAGGTCTGC+TGG | - | chr8_1:47626588-47626607 | None:intergenic | 45.0% | |
AGCAGACCTTCCAACTGATT+TGG | + | chr8_1:47626587-47626606 | Msa1197340:CDS | 45.0% | |
!! | GGTGCTGATATCTGTAGACA+AGG | + | chr8_1:47626913-47626932 | Msa1197340:CDS | 45.0% |
!! | CTTTTGGGTCTCATAACCTG+TGG | - | chr8_1:47626989-47627008 | None:intergenic | 45.0% |
!! | AAGCTTGTTGTCACGAAGAC+AGG | + | chr8_1:47627006-47627025 | Msa1197340:CDS | 45.0% |
!! | AAGCACCTGGTATTGGTCTA+CGG | - | chr8_1:47627406-47627425 | None:intergenic | 45.0% |
TCACAGGTTACATCACTTGG+GGG | - | chr8_1:47627797-47627816 | None:intergenic | 45.0% | |
!! | AAATTATATTATATGATTAT+AGG | + | chr8_1:47626503-47626522 | Msa1197340:intron | 5.0% |
!! | ATATATGTAAATATTTATTT+CGG | + | chr8_1:47627825-47627844 | Msa1197340:three_prime_UTR | 5.0% |
!! | CCTGTCCAATCTTTGAAGCG+CGG | - | chr8_1:47623042-47623061 | None:intergenic | 50.0% |
CAATTACCCGCTGTTGTTCC+AGG | + | chr8_1:47623090-47623109 | Msa1197340:CDS | 50.0% | |
TGCATACCAAGGGCAAAGTG+CGG | - | chr8_1:47623213-47623232 | None:intergenic | 50.0% | |
! | TTCTTTACTGGCTGCACTGC+AGG | + | chr8_1:47623289-47623308 | Msa1197340:intron | 50.0% |
! | TGGCCGTTGTGTGCAGTTTT+AGG | - | chr8_1:47624126-47624145 | None:intergenic | 50.0% |
GATAACACCCAGTTGAGGGA+AGG | - | chr8_1:47624518-47624537 | None:intergenic | 50.0% | |
! | CTAGCTTGCACTCTCAATGG+TGG | - | chr8_1:47625438-47625457 | None:intergenic | 50.0% |
! | CACCATTGAGAGTGCAAGCT+AGG | + | chr8_1:47625436-47625455 | Msa1197340:intron | 50.0% |
CTTGGATGTTGCGTGTCAGA+TGG | - | chr8_1:47625567-47625586 | None:intergenic | 50.0% | |
CATCTGACACGCAACATCCA+AGG | + | chr8_1:47625565-47625584 | Msa1197340:intron | 50.0% | |
AAAGCGGTGGAGATGCATTG+GGG | - | chr8_1:47625655-47625674 | None:intergenic | 50.0% | |
GAAAGCGGTGGAGATGCATT+GGG | - | chr8_1:47625656-47625675 | None:intergenic | 50.0% | |
AGAAAGCGGTGGAGATGCAT+TGG | - | chr8_1:47625657-47625676 | None:intergenic | 50.0% | |
TAAGCCGGTGTCTTCCAAGA+AGG | - | chr8_1:47625872-47625891 | None:intergenic | 50.0% | |
! | CAACATCCGCACCCTTTTTC+GGG | - | chr8_1:47625911-47625930 | None:intergenic | 50.0% |
! | GAAAAAGGGTGCGGATGTTG+AGG | + | chr8_1:47625911-47625930 | Msa1197340:intron | 50.0% |
TGAGTTCCACTTTGCTCCAG+GGG | - | chr8_1:47625960-47625979 | None:intergenic | 50.0% | |
CTGAGTTCCACTTTGCTCCA+GGG | - | chr8_1:47625961-47625980 | None:intergenic | 50.0% | |
AACCGTTCTCCAACAAGACG+AGG | + | chr8_1:47626193-47626212 | Msa1197340:CDS | 50.0% | |
TGGAACCCTTGCTGAGACTA+GGG | + | chr8_1:47626289-47626308 | Msa1197340:CDS | 50.0% | |
TAGGGCAGCAACTGCCAATT+GGG | + | chr8_1:47626307-47626326 | Msa1197340:CDS | 50.0% | |
! | ACTTGGTTGGTGTCCCCAAT+TGG | - | chr8_1:47626324-47626343 | None:intergenic | 50.0% |
GGTAGGCGAGATGTTTATGC+TGG | + | chr8_1:47626771-47626790 | Msa1197340:intron | 50.0% | |
! | TCTTTGGAAGCTGAGAGTGG+TGG | + | chr8_1:47626890-47626909 | Msa1197340:CDS | 50.0% |
! | CTTTGGAAGCTGAGAGTGGT+GGG | + | chr8_1:47626891-47626910 | Msa1197340:CDS | 50.0% |
TTTGGAAGCTGAGAGTGGTG+GGG | + | chr8_1:47626892-47626911 | Msa1197340:CDS | 50.0% | |
GAAGAACTACTTCCGTCCAC+AGG | + | chr8_1:47626970-47626989 | Msa1197340:CDS | 50.0% | |
TGGGTCTCATAACCTGTGGA+CGG | - | chr8_1:47626985-47627004 | None:intergenic | 50.0% | |
GTTGTCACGAAGACAGGCAT+TGG | + | chr8_1:47627012-47627031 | Msa1197340:CDS | 50.0% | |
! | CCAGTGTCGAGTACAGAATC+TGG | - | chr8_1:47627333-47627352 | None:intergenic | 50.0% |
CCAGATTCTGTACTCGACAC+TGG | + | chr8_1:47627330-47627349 | Msa1197340:CDS | 50.0% | |
!! | TGGGGGTATTCCTACGACAT+TGG | - | chr8_1:47627780-47627799 | None:intergenic | 50.0% |
TGGGTCCGCGCTTCAAAGAT+TGG | + | chr8_1:47623034-47623053 | Msa1197340:CDS | 55.0% | |
CCGCGCTTCAAAGATTGGAC+AGG | + | chr8_1:47623039-47623058 | Msa1197340:CDS | 55.0% | |
AAGGAGGTCGCCACACAGAT+GGG | - | chr8_1:47623537-47623556 | None:intergenic | 55.0% | |
TCCAAGGAACCTCCAGCTGA+TGG | + | chr8_1:47625581-47625600 | Msa1197340:intron | 55.0% | |
ACCATCAGCTGGAGGTTCCT+TGG | - | chr8_1:47625585-47625604 | None:intergenic | 55.0% | |
AGATGCATTGGGGGGATGTC+TGG | - | chr8_1:47625645-47625664 | None:intergenic | 55.0% | |
AAGCGGTGGAGATGCATTGG+GGG | - | chr8_1:47625654-47625673 | None:intergenic | 55.0% | |
TGTCTTCCAAGAAGGTCGCG+TGG | - | chr8_1:47625864-47625883 | None:intergenic | 55.0% | |
GCGACCTTCTTGGAAGACAC+CGG | + | chr8_1:47625865-47625884 | Msa1197340:intron | 55.0% | |
!! | TTGGAAGACACCGGCTTACG+AGG | + | chr8_1:47625874-47625893 | Msa1197340:intron | 55.0% |
!! | TGGAAGACACCGGCTTACGA+GGG | + | chr8_1:47625875-47625894 | Msa1197340:intron | 55.0% |
GAGAAGCCCGAAAAAGGGTG+CGG | + | chr8_1:47625902-47625921 | Msa1197340:intron | 55.0% | |
AGAAGACCCCTGGAGCAAAG+TGG | + | chr8_1:47625951-47625970 | Msa1197340:intron | 55.0% | |
GCTGAGTTCCACTTTGCTCC+AGG | - | chr8_1:47625962-47625981 | None:intergenic | 55.0% | |
GGAGCAAAGTGGAACTCAGC+TGG | + | chr8_1:47625962-47625981 | Msa1197340:intron | 55.0% | |
!!! | AGGGTTTTGGTGACGACAGG+AGG | - | chr8_1:47626155-47626174 | None:intergenic | 55.0% |
!!! | GTCAGGGTTTTGGTGACGAC+AGG | - | chr8_1:47626158-47626177 | None:intergenic | 55.0% |
CTGGAACCCTTGCTGAGACT+AGG | + | chr8_1:47626288-47626307 | Msa1197340:CDS | 55.0% | |
TGCTGCCCTAGTCTCAGCAA+GGG | - | chr8_1:47626297-47626316 | None:intergenic | 55.0% | |
TTGCTGCCCTAGTCTCAGCA+AGG | - | chr8_1:47626298-47626317 | None:intergenic | 55.0% | |
CTAGGGCAGCAACTGCCAAT+TGG | + | chr8_1:47626306-47626325 | Msa1197340:CDS | 55.0% | |
AGGGCAGCAACTGCCAATTG+GGG | + | chr8_1:47626308-47626327 | Msa1197340:CDS | 55.0% | |
CAAGGAGGTCGCCACACAGA+TGG | - | chr8_1:47623538-47623557 | None:intergenic | 60.0% | |
CATCTGTGTGGCGACCTCCT+TGG | + | chr8_1:47623536-47623555 | Msa1197340:intron | 60.0% | |
AGCGGTGGAGATGCATTGGG+GGG | - | chr8_1:47625653-47625672 | None:intergenic | 60.0% | |
CAGCCACAAACGCCGAAGCA+TGG | + | chr8_1:47625704-47625723 | Msa1197340:intron | 60.0% | |
TGGCCATGCTTCGGCGTTTG+TGG | - | chr8_1:47625710-47625729 | None:intergenic | 60.0% | |
ACACCAACCGCACCTGACGA+AGG | + | chr8_1:47625781-47625800 | Msa1197340:intron | 60.0% | |
CACCAACCGCACCTGACGAA+GGG | + | chr8_1:47625782-47625801 | Msa1197340:intron | 60.0% | |
ACCAACCGCACCTGACGAAG+GGG | + | chr8_1:47625783-47625802 | Msa1197340:intron | 60.0% | |
! | TCGTTTGGCTCCCCTTCGTC+AGG | - | chr8_1:47625796-47625815 | None:intergenic | 60.0% |
TGACGAAGGGGAGCCAAACG+AGG | + | chr8_1:47625795-47625814 | Msa1197340:intron | 60.0% | |
GCGCGGAGAAGCCCGAAAAA+GGG | + | chr8_1:47625897-47625916 | Msa1197340:intron | 60.0% | |
!! | TCGTCGGTTCAGGCCTCTCC+TGG | - | chr8_1:47625329-47625348 | None:intergenic | 65.0% |
TCCCCTTCGTCAGGTGCGGT+TGG | - | chr8_1:47625787-47625806 | None:intergenic | 65.0% | |
TGGCTCCCCTTCGTCAGGTG+CGG | - | chr8_1:47625791-47625810 | None:intergenic | 65.0% | |
TTCTCCGCGCCCTCGTAAGC+CGG | - | chr8_1:47625887-47625906 | None:intergenic | 65.0% | |
GGCGCGGAGAAGCCCGAAAA+AGG | + | chr8_1:47625896-47625915 | Msa1197340:intron | 65.0% | |
ACGGCGCCGCACTTTGCCCT+TGG | + | chr8_1:47623204-47623223 | Msa1197340:CDS | 70.0% | |
GCGTGGCAGCCCCCTCGTTT+GGG | - | chr8_1:47625847-47625866 | None:intergenic | 70.0% | |
GGGCTGCCACGCGACCTTCT+TGG | + | chr8_1:47625855-47625874 | Msa1197340:intron | 70.0% | |
!! | GACACCGGCTTACGAGGGCG+CGG | + | chr8_1:47625880-47625899 | Msa1197340:intron | 70.0% |
CGCGTGGCAGCCCCCTCGTT+TGG | - | chr8_1:47625848-47625867 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 47622925 | 47627881 | 47622925 | ID=Msa1197340;Name=Msa1197340 |
chr8_1 | mRNA | 47622925 | 47627881 | 47622925 | ID=Msa1197340-mRNA-1;Parent=Msa1197340;Name=Msa1197340-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.37|0.33|1|0.5|0.22|9|342|400 |
chr8_1 | exon | 47622925 | 47623112 | 47622925 | ID=Msa1197340-mRNA-1:exon:15108;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47623131 | 47623225 | 47623131 | ID=Msa1197340-mRNA-1:exon:15109;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47623311 | 47623441 | 47623311 | ID=Msa1197340-mRNA-1:exon:15110;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47626182 | 47626430 | 47626182 | ID=Msa1197340-mRNA-1:exon:15111;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47626525 | 47626681 | 47626525 | ID=Msa1197340-mRNA-1:exon:15112;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47626855 | 47627063 | 47626855 | ID=Msa1197340-mRNA-1:exon:15113;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47627144 | 47627203 | 47627144 | ID=Msa1197340-mRNA-1:exon:15114;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47627295 | 47627440 | 47627295 | ID=Msa1197340-mRNA-1:exon:15115;Parent=Msa1197340-mRNA-1 |
chr8_1 | exon | 47627572 | 47627881 | 47627572 | ID=Msa1197340-mRNA-1:exon:15116;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47622925 | 47623112 | 47622925 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47623131 | 47623225 | 47623131 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47623311 | 47623441 | 47623311 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47626182 | 47626430 | 47626182 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47626525 | 47626681 | 47626525 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47626855 | 47627063 | 47626855 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47627144 | 47627203 | 47627144 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | CDS | 47627295 | 47627408 | 47627295 | ID=Msa1197340-mRNA-1:cds;Parent=Msa1197340-mRNA-1 |
chr8_1 | three_prime_UTR | 47627409 | 47627440 | 47627409 | ID=Msa1197340-mRNA-1:three_prime_utr;Parent=Msa1197340-mRNA-1 |
chr8_1 | three_prime_UTR | 47627572 | 47627881 | 47627572 | ID=Msa1197340-mRNA-1:three_prime_utr;Parent=Msa1197340-mRNA-1 |
Gene Sequence |
Protein sequence |