AlfalfaGEDB | Msa1198230

M. sativa cultivar zhongmu-4 / Msa1198230

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198230	XP_024628248.1	66.929	127	33	2	12	138	234	351	2.00e-42	157
Msa1198230	XP_024628248.1	66.929	127	33	2	92	218	234	351	2.00e-42	157
Msa1198230	XP_024628248.1	94.828	58	3	0	1	58	294	351	3.18e-26	114

Showing 1 to 3 of 3 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198230	sp\|Q6DYE5\|U496K_ARATH	56.579	76	30	1	63	138	294	366	7.47e-19	87.0
Msa1198230	sp\|Q6DYE5\|U496K_ARATH	56.579	76	30	1	143	218	294	366	7.47e-19	87.0

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0431690	Msa1198230	0.820387	7.047359e-53	-8.615850e-47
Msa1198210	Msa1198230	0.969626	2.123177e-130	-8.615850e-47
Msa1198220	Msa1198230	0.988164	5.892080e-173	-8.615850e-47
Msa1198230	Msa1292400	0.834846	2.366733e-56	-8.615850e-47
Msa1198230	Msa1407600	0.801979	6.972442e-49	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198230	MtrunA17_Chr8g0367331	66.929	127	33	2	12	138	234	351	1.84e-46	157
Msa1198230	MtrunA17_Chr8g0367331	66.929	127	33	2	92	218	234	351	1.84e-46	157
Msa1198230	MtrunA17_Chr8g0367331	94.828	58	3	0	1	58	294	351	2.92e-30	114
Msa1198230	MtrunA17_Chr1g0157041	88.608	79	8	1	60	138	267	344	1.30e-35	129
Msa1198230	MtrunA17_Chr1g0157041	88.608	79	8	1	140	218	267	344	1.30e-35	129
Msa1198230	MtrunA17_Chr1g0157041	86.207	58	7	1	1	58	288	344	6.55e-20	86.7
Msa1198230	MtrunA17_Chr3g0143271	64.198	81	27	1	60	138	273	353	2.45e-26	104
Msa1198230	MtrunA17_Chr3g0143271	64.198	81	27	1	140	218	273	353	2.45e-26	104
Msa1198230	MtrunA17_Chr3g0143271	61.667	60	21	1	1	58	294	353	8.59e-15	72.4

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1198230	AT1G20180.2	56.579	76	30	1	63	138	263	335	7.09e-20	86.7
Msa1198230	AT1G20180.2	56.579	76	30	1	143	218	263	335	7.09e-20	86.7
Msa1198230	AT1G20180.1	56.579	76	30	1	63	138	294	366	7.60e-20	87.0
Msa1198230	AT1G20180.1	56.579	76	30	1	143	218	294	366	7.60e-20	87.0
Msa1198230	AT3G49070.2	44.872	78	42	1	61	138	262	338	1.53e-11	63.2
Msa1198230	AT3G49070.2	44.872	78	42	1	141	218	262	338	1.53e-11	63.2
Msa1198230	AT3G49070.1	44.872	78	42	1	61	138	302	378	1.86e-11	63.2
Msa1198230	AT3G49070.1	44.872	78	42	1	141	218	302	378	1.86e-11	63.2

Showing 1 to 8 of 8 entries

Previous1Next

Find 27 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTGATGCTGCTGCAAAA+GGG	0.438252	8_1:+49577033	Msa1198230:CDS
AACTTGATGCTGCTGCAAAA+GGG	0.438252	8_1:+49580478	Msa1198230:CDS
ACTTGATGCTGCTGCAAAAG+GGG	0.547139	8_1:+49577034	Msa1198230:CDS
ACTTGATGCTGCTGCAAAAG+GGG	0.547139	8_1:+49580479	Msa1198230:CDS
ATGATTTGGATACTATGAGT+AGG	0.598596	8_1:+49573616	None:intergenic
ATGATTTGGATACTATGAGT+AGG	0.598596	8_1:+49577072	Msa1198230:CDS
ATGATTTGGATACTATGAGT+AGG	0.598596	8_1:+49580517	Msa1198230:CDS
CAACTTGATGCTGCTGCAAA+AGG	0.382116	8_1:+49577032	Msa1198230:CDS
CAACTTGATGCTGCTGCAAA+AGG	0.382116	8_1:+49580477	Msa1198230:CDS
CTATGAGTAGGATGGTGAAG+AGG	0.584575	8_1:+49573628	None:intergenic

Showing 1 to 10 of 27 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGTGGAACATAGAAAAA+TGG	+	chr8_1:49573659-49573678	Msa1198230:CDS	30.0%
GTTTGTGTGAAGAATAATGT+TGG	+	chr8_1:49573690-49573709	Msa1198230:CDS	30.0%
TTCTTACCATCAACAAATCT+AGG	+	chr8_1:49573817-49573836	Msa1198230:intron	30.0%
AAATAAAGGGAAATGCTAAC+CGG	+	chr8_1:49573873-49573892	Msa1198230:intron	30.0%
CGTAGTTCATATCTTTAGTT+CGG	-	chr8_1:49574101-49574120	None:intergenic	30.0%
CTAAAGATATGAACTACGTT+TGG	+	chr8_1:49574103-49574122	Msa1198230:intron	30.0%
TCAATTTGCAAAACAAGAAG+GGG	-	chr8_1:49574411-49574430	None:intergenic	30.0%
CAAATTGATGTACGTTTAGA+TGG	-	chr8_1:49574530-49574549	None:intergenic	30.0%
CATCTAAACGTACATCAATT+TGG	+	chr8_1:49574528-49574547	Msa1198230:intron	30.0%
GTATTTATTGAAGGTAAGGT+TGG	+	chr8_1:49575069-49575088	Msa1198230:intron	30.0%

Showing 1 to 10 of 355 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	49573630	49580704	49573630	ID=Msa1198230;Name=Msa1198230
chr8_1	mRNA	49573630	49580704	49573630	ID=Msa1198230-mRNA-1;Parent=Msa1198230;Name=Msa1198230-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|0\|0\|1\|0\|0\|3\|0\|218
chr8_1	exon	49573630	49573803	49573630	ID=Msa1198230-mRNA-1:exon:15554;Parent=Msa1198230-mRNA-1
chr8_1	exon	49577020	49577259	49577020	ID=Msa1198230-mRNA-1:exon:15555;Parent=Msa1198230-mRNA-1
chr8_1	exon	49580465	49580704	49580465	ID=Msa1198230-mRNA-1:exon:15556;Parent=Msa1198230-mRNA-1
chr8_1	CDS	49573630	49573803	49573630	ID=Msa1198230-mRNA-1:cds;Parent=Msa1198230-mRNA-1
chr8_1	CDS	49577020	49577259	49577020	ID=Msa1198230-mRNA-1:cds;Parent=Msa1198230-mRNA-1
chr8_1	CDS	49580465	49580704	49580465	ID=Msa1198230-mRNA-1:cds;Parent=Msa1198230-mRNA-1

Gene Sequence

>Msa1198230

ATGAGTAGGATGGTGAAGAGGTTGAATGATGAAGTGGAACATAGAAAAATGGTTGCTGATGTTTGTGTGAAGAATAATGTTGGTAGTAAATGTGAAATATTGAATAGGGTTATGAGTGAATATAGAGATCAAGAGTCTAGCTTTTTGGATCAGTTGGAAGAGCTTGAAGAACATACTATGTGTGAACAACTTGATGCTGCTGCAAAAGGGGTTTTTATATTGATAAATGATTTGGATACTATGAGTAGGATGGTGAAGAGGTTGAATGATGAAGTGGAACATAGAAAAATGGTTGCTGATGTTTGTGTGAAGAATAATGTTGGCAGTAAATGTGAAATATTGAATAGGGTTATGAGTGAATATAGAGATCAAGAGTCTAGCTTTTTGGATCAGTTGGAAGAGCTTGAAGAACATACTATGTGTGAACAACTTGATGCTGCTGCAAAAGGGGTTTTTATATTGATAAATGATTTGGATACTATGAGTAGGATGGTGAAGAGGTTGAATGATGAAGTGGAACATAGAAAAATGGTTGCTGATGTTTGTGTGAAGAATAATGTTGGCAGTAAATGTGAAATATTGAATAGGGTTATGAGTGAATATAGAGATCAAGAGTCTAGCTTTTTGGATCAGTTGGAAGAGCTTGAAGAACAT

Protein sequence

>Msa1198230

MSRMVKRLNDEVEHRKMVADVCVKNNVGSKCEILNRVMSEYRDQESSFLDQLEELEEHTMCEQLDAAAKGVFILINDLDTMSRMVKRLNDEVEHRKMVADVCVKNNVGSKCEILNRVMSEYRDQESSFLDQLEELEEHTMCEQLDAAAKGVFILINDLDTMSRMVKRLNDEVEHRKMVADVCVKNNVGSKCEILNRVMSEYRDQESSFLDQLEELEEH