Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199380 | XP_003628698.1 | 93.448 | 290 | 15 | 1 | 1 | 286 | 1 | 290 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199380 | sp|Q9FNN6|SRM1_ARATH | 50.662 | 302 | 118 | 7 | 1 | 282 | 3 | 293 | 2.70e-85 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1199380 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1199380 | Msa1290500 | 0.890664 | 8.028158e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199380 | MtrunA17_Chr8g0364731 | 93.182 | 176 | 8 | 1 | 115 | 286 | 10 | 185 | 4.25e-116 | 331 |
| Msa1199380 | MtrunA17_Chr8g0365011 | 59.091 | 308 | 79 | 7 | 1 | 285 | 1 | 284 | 7.08e-112 | 324 |
| Msa1199380 | MtrunA17_Chr1g0162081 | 58.000 | 300 | 96 | 5 | 1 | 281 | 3 | 291 | 1.02e-109 | 319 |
| Msa1199380 | MtrunA17_Chr8g0364741 | 93.913 | 115 | 7 | 0 | 1 | 115 | 1 | 115 | 9.50e-77 | 229 |
| Msa1199380 | MtrunA17_Chr4g0062741 | 44.251 | 287 | 99 | 11 | 6 | 245 | 4 | 276 | 7.15e-62 | 197 |
| Msa1199380 | MtrunA17_Chr1g0210471 | 54.444 | 180 | 76 | 3 | 8 | 183 | 22 | 199 | 1.14e-52 | 172 |
| Msa1199380 | MtrunA17_Chr5g0436501 | 48.634 | 183 | 92 | 1 | 3 | 183 | 20 | 202 | 2.71e-51 | 169 |
| Msa1199380 | MtrunA17_Chr3g0104071 | 47.340 | 188 | 89 | 3 | 2 | 181 | 35 | 220 | 6.93e-51 | 170 |
| Msa1199380 | MtrunA17_Chr5g0429521 | 48.066 | 181 | 83 | 4 | 2 | 175 | 23 | 199 | 1.81e-49 | 166 |
| Msa1199380 | MtrunA17_Chr7g0241761 | 46.739 | 184 | 87 | 2 | 9 | 183 | 34 | 215 | 1.76e-47 | 160 |
| Msa1199380 | MtrunA17_Chr5g0432921 | 40.230 | 174 | 84 | 8 | 5 | 170 | 16 | 177 | 1.06e-25 | 101 |
| Msa1199380 | MtrunA17_Chr5g0432941 | 37.870 | 169 | 94 | 6 | 5 | 170 | 17 | 177 | 6.82e-25 | 99.4 |
| Msa1199380 | MtrunA17_Chr5g0440731 | 56.250 | 80 | 34 | 1 | 102 | 180 | 101 | 180 | 4.43e-24 | 99.0 |
| Msa1199380 | MtrunA17_Chr6g0488471 | 67.123 | 73 | 22 | 1 | 100 | 172 | 91 | 161 | 5.25e-24 | 98.6 |
| Msa1199380 | MtrunA17_Chr4g0055931 | 58.974 | 78 | 30 | 1 | 95 | 172 | 84 | 159 | 1.01e-23 | 98.6 |
| Msa1199380 | MtrunA17_Chr2g0331031 | 60.976 | 82 | 26 | 2 | 95 | 172 | 94 | 173 | 2.14e-23 | 97.8 |
| Msa1199380 | MtrunA17_Chr5g0440741 | 59.494 | 79 | 30 | 2 | 103 | 180 | 98 | 175 | 2.48e-23 | 96.7 |
| Msa1199380 | MtrunA17_Chr8g0389241 | 63.014 | 73 | 24 | 1 | 100 | 172 | 99 | 168 | 2.75e-23 | 96.3 |
| Msa1199380 | MtrunA17_Chr5g0409841 | 44.954 | 109 | 54 | 1 | 102 | 210 | 88 | 190 | 3.05e-23 | 95.1 |
| Msa1199380 | MtrunA17_Chr1g0155181 | 56.522 | 69 | 30 | 0 | 4 | 72 | 1 | 69 | 1.83e-21 | 86.3 |
| Msa1199380 | MtrunA17_Chr5g0415191 | 70.175 | 57 | 17 | 0 | 95 | 151 | 91 | 147 | 7.26e-20 | 87.8 |
| Msa1199380 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 10 | 74 | 16 | 80 | 1.16e-19 | 81.3 |
| Msa1199380 | MtrunA17_Chr4g0059701 | 71.154 | 52 | 15 | 0 | 100 | 151 | 78 | 129 | 1.97e-19 | 85.9 |
| Msa1199380 | MtrunA17_Chr3g0141601 | 53.623 | 69 | 32 | 0 | 4 | 72 | 1 | 69 | 4.38e-19 | 80.1 |
| Msa1199380 | MtrunA17_Chr5g0409831 | 44.248 | 113 | 57 | 3 | 102 | 213 | 73 | 180 | 4.91e-19 | 84.0 |
| Msa1199380 | MtrunA17_Chr3g0135671 | 50.000 | 84 | 41 | 1 | 96 | 178 | 81 | 164 | 1.21e-17 | 80.1 |
| Msa1199380 | MtrunA17_Chr5g0404101 | 52.941 | 68 | 32 | 0 | 5 | 72 | 14 | 81 | 2.30e-17 | 75.9 |
| Msa1199380 | MtrunA17_Chr7g0255841 | 52.174 | 69 | 33 | 0 | 14 | 82 | 16 | 84 | 8.27e-17 | 73.9 |
| Msa1199380 | MtrunA17_Chr3g0092621 | 54.412 | 68 | 29 | 1 | 106 | 173 | 84 | 149 | 4.12e-16 | 74.3 |
| Msa1199380 | MtrunA17_Chr6g0449111 | 50.000 | 72 | 36 | 0 | 1 | 72 | 1 | 72 | 5.09e-16 | 71.6 |
| Msa1199380 | MtrunA17_Chr3g0081631 | 49.315 | 73 | 36 | 1 | 1 | 72 | 1 | 73 | 3.74e-15 | 69.7 |
| Msa1199380 | MtrunA17_Chr6g0452791 | 51.282 | 78 | 33 | 2 | 78 | 151 | 49 | 125 | 1.19e-14 | 70.5 |
| Msa1199380 | MtrunA17_Chr3g0113121 | 35.000 | 160 | 90 | 6 | 22 | 173 | 14 | 167 | 1.61e-13 | 68.2 |
| Msa1199380 | MtrunA17_Chr8g0373131 | 40.000 | 70 | 41 | 1 | 10 | 79 | 5 | 73 | 1.84e-12 | 61.6 |
| Msa1199380 | MtrunA17_Chr8g0373111 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.15e-12 | 61.6 |
| Msa1199380 | MtrunA17_Chr8g0373121 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.15e-12 | 61.6 |
| Msa1199380 | MtrunA17_Chr3g0141641 | 41.270 | 63 | 37 | 0 | 10 | 72 | 3 | 65 | 4.77e-12 | 61.2 |
| Msa1199380 | MtrunA17_Chr8g0373101 | 43.284 | 67 | 35 | 2 | 4 | 70 | 1 | 64 | 1.19e-11 | 59.3 |
| Msa1199380 | MtrunA17_Chr5g0404301 | 47.541 | 61 | 31 | 1 | 10 | 70 | 4 | 63 | 2.14e-11 | 58.5 |
| Msa1199380 | MtrunA17_Chr1g0192061 | 44.444 | 81 | 43 | 2 | 108 | 187 | 63 | 142 | 5.30e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199380 | AT5G08520.1 | 50.662 | 302 | 118 | 7 | 1 | 282 | 3 | 293 | 2.74e-86 | 260 |
| Msa1199380 | AT5G23650.1 | 38.485 | 330 | 141 | 7 | 3 | 272 | 6 | 333 | 6.27e-57 | 186 |
| Msa1199380 | AT1G49010.1 | 41.971 | 274 | 121 | 6 | 10 | 250 | 8 | 276 | 3.44e-50 | 168 |
| Msa1199380 | AT5G04760.1 | 52.941 | 170 | 75 | 3 | 6 | 175 | 2 | 166 | 7.71e-50 | 164 |
| Msa1199380 | AT2G38090.1 | 47.283 | 184 | 79 | 3 | 8 | 175 | 27 | 208 | 5.33e-49 | 164 |
| Msa1199380 | AT5G58900.1 | 46.703 | 182 | 84 | 2 | 5 | 175 | 29 | 208 | 1.54e-48 | 163 |
| Msa1199380 | AT5G05790.2 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 4.89e-47 | 159 |
| Msa1199380 | AT5G05790.1 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 4.89e-47 | 159 |
| Msa1199380 | AT3G11280.2 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 1.33e-46 | 157 |
| Msa1199380 | AT3G11280.1 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 1.33e-46 | 157 |
| Msa1199380 | AT5G01200.1 | 44.086 | 186 | 82 | 5 | 10 | 175 | 30 | 213 | 9.61e-41 | 142 |
| Msa1199380 | AT3G10580.2 | 38.136 | 236 | 110 | 8 | 10 | 233 | 8 | 219 | 1.70e-36 | 131 |
| Msa1199380 | AT3G10580.1 | 38.494 | 239 | 105 | 9 | 10 | 233 | 8 | 219 | 3.05e-36 | 131 |
| Msa1199380 | AT4G09450.1 | 42.775 | 173 | 81 | 5 | 4 | 174 | 1 | 157 | 1.19e-32 | 119 |
| Msa1199380 | AT5G47390.1 | 56.701 | 97 | 40 | 1 | 84 | 180 | 74 | 168 | 8.52e-26 | 105 |
| Msa1199380 | AT5G56840.1 | 59.740 | 77 | 30 | 1 | 101 | 177 | 86 | 161 | 1.08e-21 | 91.3 |
| Msa1199380 | AT3G10590.1 | 35.829 | 187 | 93 | 8 | 4 | 174 | 1 | 176 | 1.54e-21 | 90.5 |
| Msa1199380 | AT1G70000.1 | 70.175 | 57 | 17 | 0 | 95 | 151 | 87 | 143 | 6.08e-20 | 87.4 |
| Msa1199380 | AT1G70000.2 | 70.175 | 57 | 17 | 0 | 95 | 151 | 87 | 143 | 6.08e-20 | 87.4 |
| Msa1199380 | AT3G16350.1 | 61.765 | 68 | 18 | 1 | 84 | 151 | 123 | 182 | 1.67e-19 | 87.8 |
| Msa1199380 | AT4G39250.1 | 55.556 | 63 | 28 | 0 | 10 | 72 | 14 | 76 | 2.14e-19 | 81.6 |
| Msa1199380 | AT5G61620.1 | 51.220 | 82 | 38 | 1 | 93 | 174 | 95 | 174 | 2.95e-19 | 86.3 |
| Msa1199380 | AT1G75250.2 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 5.71e-19 | 80.5 |
| Msa1199380 | AT1G75250.1 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 2.76e-18 | 79.3 |
| Msa1199380 | AT1G74840.2 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 6.99e-18 | 81.3 |
| Msa1199380 | AT1G74840.1 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 1.00e-17 | 81.3 |
| Msa1199380 | AT1G19000.2 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.05e-17 | 80.9 |
| Msa1199380 | AT1G19000.1 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.05e-17 | 80.9 |
| Msa1199380 | AT2G21650.1 | 50.000 | 72 | 36 | 0 | 10 | 81 | 14 | 85 | 3.13e-16 | 73.2 |
| Msa1199380 | AT2G18328.1 | 55.932 | 59 | 26 | 0 | 14 | 72 | 15 | 73 | 1.66e-15 | 70.5 |
| Msa1199380 | AT1G19510.1 | 46.377 | 69 | 37 | 0 | 14 | 82 | 16 | 84 | 2.89e-14 | 67.8 |
Find 84 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGCTTGACCGGTAAT+TGG | 0.261142 | 8_1:+51383840 | None:intergenic |
| TCACAGAACAATGGATGAAA+TGG | 0.332083 | 8_1:-51386583 | None:intergenic |
| GATATCAACCACATTGAATC+TGG | 0.342793 | 8_1:-51386402 | Msa1199380:CDS |
| CCGGGAGCAGTAAAATTAAC+TGG | 0.384224 | 8_1:+51383666 | None:intergenic |
| GGCATAACTGTCTCAGAAAC+TGG | 0.395799 | 8_1:+51383621 | None:intergenic |
| CACCCCATCCATGGTTCTCC+AGG | 0.402855 | 8_1:+51384039 | None:intergenic |
| GGAGACATGGATTATGGTCT+TGG | 0.404056 | 8_1:-51383645 | Msa1199380:CDS |
| GCTCCCGGAGACATGGATTA+TGG | 0.405160 | 8_1:-51383651 | Msa1199380:CDS |
| TTGAATAGGCTATTTCTTCA+AGG | 0.405967 | 8_1:-51384062 | Msa1199380:intron |
| GATACAACTGGTTCTCCTAT+AGG | 0.406805 | 8_1:+51383702 | None:intergenic |
| CCATCGATCCACAGCGTCCT+CGG | 0.411794 | 8_1:+51386497 | None:intergenic |
| AGCAGAATTGCTTGCTTGAC+CGG | 0.418729 | 8_1:+51383833 | None:intergenic |
| TTGATTCCAGCAGGTGGGAC+TGG | 0.426711 | 8_1:+51383786 | None:intergenic |
| TGTATTCCAGCAGGTGGGGC+TGG | 0.439045 | 8_1:+51383747 | None:intergenic |
| CCTAGGATCGGGCAACCTAT+AGG | 0.445645 | 8_1:-51383717 | Msa1199380:CDS |
| GCACCTCAAGGACCAATTAC+CGG | 0.448210 | 8_1:-51383852 | Msa1199380:CDS |
| AATCCTCCAGCCCCACCTGC+TGG | 0.449144 | 8_1:-51383753 | Msa1199380:CDS |
| GTCGTAGGACCCAGGTTCAT+TGG | 0.464354 | 8_1:+51383591 | None:intergenic |
| GCTCCTCCAGTCCCACCTGC+TGG | 0.465316 | 8_1:-51383792 | Msa1199380:CDS |
| CCCAGGTTCATTGGTACCCC+TGG | 0.466627 | 8_1:+51383600 | None:intergenic |
| TACACGCTGCTCCTAGGATC+GGG | 0.467978 | 8_1:-51383728 | Msa1199380:CDS |
| CTGGAATACACGCTGCTCCT+AGG | 0.469742 | 8_1:-51383734 | Msa1199380:CDS |
| TAGGCTATTTCTTCAAGGCC+TGG | 0.472954 | 8_1:-51384057 | Msa1199380:CDS |
| GTGAAGGAGGAGCTGTGAAA+AGG | 0.473544 | 8_1:-51386323 | Msa1199380:CDS |
| CCTATAGGTTGCCCGATCCT+AGG | 0.480400 | 8_1:+51383717 | None:intergenic |
| CACAGAACAATGGATGAAAT+GGG | 0.481775 | 8_1:-51386582 | None:intergenic |
| TGAAGGAGGAGCTGTGAAAA+GGG | 0.482163 | 8_1:-51386322 | Msa1199380:CDS |
| GTACCAACTGTAGATACAAC+TGG | 0.482219 | 8_1:+51383690 | None:intergenic |
| AGAACCATGGATGGGGTGAC+TGG | 0.483144 | 8_1:-51384034 | Msa1199380:CDS |
| TTCTTATCAAGAACGGCGAA+AGG | 0.494765 | 8_1:-51386283 | Msa1199380:CDS |
| AACGGCGAAAGGGTGTTCCT+TGG | 0.495446 | 8_1:-51386272 | Msa1199380:CDS |
| GCCAGGGGTACCAATGAACC+TGG | 0.500745 | 8_1:-51383601 | Msa1199380:CDS |
| CATCGATCCACAGCGTCCTC+GGG | 0.504680 | 8_1:+51386498 | None:intergenic |
| AGCTGTGAAAAGGGGAGCTA+AGG | 0.515551 | 8_1:-51386313 | Msa1199380:CDS |
| AAAGGTAACATCATGTATGC+TGG | 0.520807 | 8_1:+51383896 | None:intergenic |
| AAAATCGCGGCTGATGTACC+CGG | 0.524444 | 8_1:-51386471 | Msa1199380:CDS |
| CAAAGCATTTGAAAATGCAT+TGG | 0.524922 | 8_1:-51386529 | Msa1199380:CDS |
| TGAAAGAGAAGAAAGAAAGA+AGG | 0.525485 | 8_1:-51383923 | Msa1199380:CDS |
| ATTCCAGCAGGTGGGGCTGG+AGG | 0.527139 | 8_1:+51383750 | None:intergenic |
| AGCGTGTATTCCAGCAGGTG+GGG | 0.532991 | 8_1:+51383743 | None:intergenic |
| GCATGGCTTGCTACTTGTGT+AGG | 0.536057 | 8_1:+51383975 | None:intergenic |
| AAGACCATAATCCATGTCTC+CGG | 0.538089 | 8_1:+51383647 | None:intergenic |
| CAGCGTGTATTCCAGCAGGT+GGG | 0.540781 | 8_1:+51383742 | None:intergenic |
| CTATGTTCATCTTCCGTCCA+AGG | 0.545058 | 8_1:+51386255 | None:intergenic |
| GTTTCTGAGACAGTTATGCC+AGG | 0.548613 | 8_1:-51383618 | Msa1199380:CDS |
| GGTCAAGCAAGCAATTCTGC+TGG | 0.550077 | 8_1:-51383831 | Msa1199380:CDS |
| GCAGCGTGTATTCCAGCAGG+TGG | 0.551793 | 8_1:+51383741 | None:intergenic |
| AAGAGTTCAACAAAGCGTAC+TGG | 0.557383 | 8_1:-51386345 | Msa1199380:CDS |
| AAGGCCTGGAGAACCATGGA+TGG | 0.559427 | 8_1:-51384043 | Msa1199380:CDS |
| AGACCATAATCCATGTCTCC+GGG | 0.563041 | 8_1:+51383648 | None:intergenic |
| TCAACAAAGCGTACTGGTGA+AGG | 0.564550 | 8_1:-51386339 | Msa1199380:CDS |
| ATACACGCTGCTCCTAGGAT+CGG | 0.568201 | 8_1:-51383729 | Msa1199380:CDS |
| CGAGGACGCTGTGGATCGAT+GGG | 0.568594 | 8_1:-51386496 | Msa1199380:CDS |
| CTTGGACGGAAGATGAACAT+AGG | 0.569094 | 8_1:-51386254 | Msa1199380:intron |
| GGAGCAGCGTGTATTCCAGC+AGG | 0.573176 | 8_1:+51383738 | None:intergenic |
| TTCGCCAGTCACCCCATCCA+TGG | 0.577904 | 8_1:+51384030 | None:intergenic |
| ATTCCAGCAGGTGGGACTGG+AGG | 0.578008 | 8_1:+51383789 | None:intergenic |
| GCGAAAGGGTGTTCCTTGGA+CGG | 0.581376 | 8_1:-51386268 | Msa1199380:CDS |
| AGGCCTGGAGAACCATGGAT+GGG | 0.582995 | 8_1:-51384042 | Msa1199380:CDS |
| TCTTATCAAGAACGGCGAAA+GGG | 0.585934 | 8_1:-51386282 | Msa1199380:CDS |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_1:+51386372 | None:intergenic |
| CTTCGAGTTCTTATCAAGAA+CGG | 0.593298 | 8_1:-51386290 | Msa1199380:CDS |
| TTTCTGAGACAGTTATGCCA+GGG | 0.595865 | 8_1:-51383617 | Msa1199380:CDS |
| AGAGATTAAGCGTCACTATG+TGG | 0.598823 | 8_1:-51386436 | Msa1199380:CDS |
| CTTCAAGGCCTGGAGAACCA+TGG | 0.600275 | 8_1:-51384047 | Msa1199380:CDS |
| GTGACTGGCGAAGTATATCA+AGG | 0.602104 | 8_1:-51384019 | Msa1199380:CDS |
| GAACCAGTTGTATCTACAGT+TGG | 0.605321 | 8_1:-51383693 | Msa1199380:CDS |
| GGCCTGGAGAACCATGGATG+GGG | 0.620882 | 8_1:-51384041 | Msa1199380:CDS |
| AAATCGCGGCTGATGTACCC+GGG | 0.624584 | 8_1:-51386470 | Msa1199380:CDS |
| TGGCATATGTCGTAGGACCC+AGG | 0.624839 | 8_1:+51383583 | None:intergenic |
| AAATGGGTAGCAGCTGTGAG+TGG | 0.631015 | 8_1:-51386566 | Msa1199380:CDS |
| GGAGACATTTCAGCACCTCA+AGG | 0.642144 | 8_1:-51383864 | Msa1199380:CDS |
| ACAAAGCGTACTGGTGAAGG+AGG | 0.643312 | 8_1:-51386336 | Msa1199380:CDS |
| GAAGGAGGAGCTGTGAAAAG+GGG | 0.644294 | 8_1:-51386321 | Msa1199380:CDS |
| TTCTGAGACAGTTATGCCAG+GGG | 0.654155 | 8_1:-51383616 | Msa1199380:CDS |
| TGTTGCATGGCATATGTCGT+AGG | 0.673191 | 8_1:+51383576 | None:intergenic |
| GAATTATCCCGAGGACGCTG+TGG | 0.679154 | 8_1:-51386505 | Msa1199380:CDS |
| CCAGGGGTACCAATGAACCT+GGG | 0.686028 | 8_1:-51383600 | Msa1199380:CDS |
| TGCATTGGCGAATTATCCCG+AGG | 0.693717 | 8_1:-51386514 | Msa1199380:CDS |
| TTGAGCATATGTATGTTGCA+TGG | 0.694059 | 8_1:+51383563 | None:intergenic |
| TGACCGGTAATTGGTCCTTG+AGG | 0.703451 | 8_1:+51383849 | None:intergenic |
| GGATCGATGGGAGAAAATCG+CGG | 0.708384 | 8_1:-51386484 | Msa1199380:CDS |
| AAGTATATCAAGGTACAGTG+TGG | 0.727880 | 8_1:-51384009 | Msa1199380:CDS |
| GCACAAAACCAGATTCAATG+TGG | 0.730016 | 8_1:+51386394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTAAATAAAATAA+AGG | + | chr8_1:51384201-51384220 | None:intergenic | 0.0% |
| !! | ACTAAAATCATATTTAAATA+CGG | + | chr8_1:51383911-51383930 | None:intergenic | 10.0% |
| !!! | ATCTTGTAAATTTTTTTTAT+TGG | - | chr8_1:51383961-51383980 | Msa1199380:CDS | 10.0% |
| !!! | TTAATAATTATAGTGTTTTT+TGG | + | chr8_1:51384153-51384172 | None:intergenic | 10.0% |
| !! | AATCTAAACAAAAAAACTTA+GGG | - | chr8_1:51384118-51384137 | Msa1199380:intron | 15.0% |
| !! | TATTTAAATATATACTCTTG+AGG | - | chr8_1:51384207-51384226 | Msa1199380:intron | 15.0% |
| !!! | TTCATTGATGTTTTAATTTT+AGG | + | chr8_1:51385006-51385025 | None:intergenic | 15.0% |
| !!! | TATAAAAACTTTTCTAACAT+GGG | - | chr8_1:51385702-51385721 | Msa1199380:intron | 15.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | + | chr8_1:51383767-51383786 | None:intergenic | 20.0% |
| !! | GAATCTAAACAAAAAAACTT+AGG | - | chr8_1:51384117-51384136 | Msa1199380:intron | 20.0% |
| !! | ACACTATAATTATTAATTGC+AGG | - | chr8_1:51384157-51384176 | Msa1199380:intron | 20.0% |
| !! | CACTATAATTATTAATTGCA+GGG | - | chr8_1:51384158-51384177 | Msa1199380:intron | 20.0% |
| !! | GATATGAATGATTAAAATGA+TGG | - | chr8_1:51384358-51384377 | Msa1199380:intron | 20.0% |
| !! | GAATGAAGTAAATAAAACTA+TGG | - | chr8_1:51384702-51384721 | Msa1199380:intron | 20.0% |
| !! | ATAAAACTATGGATTTAATG+AGG | - | chr8_1:51384713-51384732 | Msa1199380:intron | 20.0% |
| !!! | GTAAGTTCTAATAAATACAT+TGG | + | chr8_1:51384848-51384867 | None:intergenic | 20.0% |
| !!! | TTTAGGATGTTTTTAATTCT+AGG | + | chr8_1:51384989-51385008 | None:intergenic | 20.0% |
| !! | AAAACATCAATGAAAATGTA+TGG | - | chr8_1:51385012-51385031 | Msa1199380:intron | 20.0% |
| !! | AAACATCAATGAAAATGTAT+GGG | - | chr8_1:51385013-51385032 | Msa1199380:intron | 20.0% |
| !! | CAAATACCAATATCATTTAA+TGG | - | chr8_1:51385423-51385442 | Msa1199380:intron | 20.0% |
| !!! | GTATAAAAACTTTTCTAACA+TGG | - | chr8_1:51385701-51385720 | Msa1199380:intron | 20.0% |
| !! | TTGGTAAATACTGATAAATA+AGG | - | chr8_1:51385744-51385763 | Msa1199380:intron | 20.0% |
| !! | TAAAACTAAAAAGATCTGAT+AGG | + | chr8_1:51385909-51385928 | None:intergenic | 20.0% |
| !!! | TATTTTCAAGTTTGTTGAAT+AGG | - | chr8_1:51386054-51386073 | Msa1199380:intron | 20.0% |
| !!! | CAACCATTTTTGAATTTACT+GGG | - | chr8_1:51384091-51384110 | Msa1199380:intron | 25.0% |
| !!! | TGTGCCTTAAAATTTTTCAA+CGG | - | chr8_1:51384570-51384589 | Msa1199380:intron | 25.0% |
| !! | AGATCCGTTGAAAAATTTTA+AGG | + | chr8_1:51384577-51384596 | None:intergenic | 25.0% |
| !! | TTTTACTAAACCATTGTATC+TGG | - | chr8_1:51384635-51384654 | Msa1199380:intron | 25.0% |
| !!! | TAGCATTTATCTAAGGTTTT+AGG | - | chr8_1:51384676-51384695 | Msa1199380:intron | 25.0% |
| ! | TGTAATAAATTCTTCTGATG+TGG | - | chr8_1:51384811-51384830 | Msa1199380:intron | 25.0% |
| ! | CTAGTAGGATTAAATAGTAT+TGG | - | chr8_1:51384894-51384913 | Msa1199380:intron | 25.0% |
| !!! | TAGGATTAAATAGTATTGGT+AGG | - | chr8_1:51384898-51384917 | Msa1199380:intron | 25.0% |
| ! | AACATCAATGAAAATGTATG+GGG | - | chr8_1:51385014-51385033 | Msa1199380:intron | 25.0% |
| !! | AACTTCCTTAATGATTTTAG+TGG | - | chr8_1:51385088-51385107 | Msa1199380:intron | 25.0% |
| ! | ACAAACCACTAAAATCATTA+AGG | + | chr8_1:51385096-51385115 | None:intergenic | 25.0% |
| ! | TAGGATATTGTGTTAGTATT+AGG | + | chr8_1:51385123-51385142 | None:intergenic | 25.0% |
| ! | AGACTTTGATACATTGATAT+AGG | - | chr8_1:51385201-51385220 | Msa1199380:intron | 25.0% |
| !! | TTAGTAACTTTTCCAAAGAT+TGG | + | chr8_1:51385302-51385321 | None:intergenic | 25.0% |
| !! | TTGACTAAATTTAGAGTTAC+TGG | - | chr8_1:51385583-51385602 | Msa1199380:intron | 25.0% |
| ! | AAAGTTTGAATTAGGAAGTT+TGG | - | chr8_1:51385725-51385744 | Msa1199380:intron | 25.0% |
| ! | TGATAAATAAGGACTAGAAT+TGG | - | chr8_1:51385755-51385774 | Msa1199380:intron | 25.0% |
| ! | GATAAATAAGGACTAGAATT+GGG | - | chr8_1:51385756-51385775 | Msa1199380:intron | 25.0% |
| ! | TGTTACTGATAATCATCTAA+TGG | + | chr8_1:51385946-51385965 | None:intergenic | 25.0% |
| ! | AATTGCAGACATTAGTTATA+TGG | - | chr8_1:51385968-51385987 | Msa1199380:intron | 25.0% |
| ! | GATGTTACCTTTGTAAAAAA+TGG | - | chr8_1:51386245-51386264 | Msa1199380:intron | 25.0% |
| !!! | AATGTCTCCATTTTTTACAA+AGG | + | chr8_1:51386255-51386274 | None:intergenic | 25.0% |
| ! | CAAAGCATTTGAAAATGCAT+TGG | - | chr8_1:51383601-51383620 | Msa1199380:CDS | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | + | chr8_1:51383681-51383700 | None:intergenic | 30.0% |
| AAAAAAACGCTATAGTTGCA+AGG | + | chr8_1:51383934-51383953 | None:intergenic | 30.0% | |
| ! | TCACGTGATGTGATTTTATT+GGG | - | chr8_1:51384042-51384061 | Msa1199380:CDS | 30.0% |
| !! | GCAACCATTTTTGAATTTAC+TGG | - | chr8_1:51384090-51384109 | Msa1199380:intron | 30.0% |
| ! | CATTTTTGAATTTACTGGGA+CGG | - | chr8_1:51384095-51384114 | Msa1199380:intron | 30.0% |
| CTAAACAAAAAAACTTAGGG+AGG | - | chr8_1:51384121-51384140 | Msa1199380:intron | 30.0% | |
| !!! | GTTTTGAAGCTTATATGTGT+CGG | - | chr8_1:51384229-51384248 | Msa1199380:intron | 30.0% |
| ATATCAGTATCGTCAAATAG+CGG | + | chr8_1:51384528-51384547 | None:intergenic | 30.0% | |
| ATAAATACATTGGATCACAG+AGG | + | chr8_1:51384838-51384857 | None:intergenic | 30.0% | |
| ACTTACTACACTTCTAATGA+CGG | - | chr8_1:51384862-51384881 | Msa1199380:intron | 30.0% | |
| !! | AATAGTATTGGTAGGTCATT+TGG | - | chr8_1:51384906-51384925 | Msa1199380:intron | 30.0% |
| AATGTATCAAAGTCTAAACG+AGG | + | chr8_1:51385196-51385215 | None:intergenic | 30.0% | |
| ! | TGTTTTGCTGGATTTTGTTA+TGG | - | chr8_1:51385269-51385288 | Msa1199380:intron | 30.0% |
| !! | GTTTTGCTGGATTTTGTTAT+GGG | - | chr8_1:51385270-51385289 | Msa1199380:intron | 30.0% |
| ATATCAGATCTGTGAAACAA+TGG | - | chr8_1:51385321-51385340 | Msa1199380:intron | 30.0% | |
| ATCTGTGAAACAATGGTATT+AGG | - | chr8_1:51385328-51385347 | Msa1199380:intron | 30.0% | |
| AATGTAGAACAATGTATTGC+TGG | - | chr8_1:51385368-51385387 | Msa1199380:intron | 30.0% | |
| CATTTGATCATCTTTGTAGA+TGG | - | chr8_1:51385628-51385647 | Msa1199380:intron | 30.0% | |
| AACATGGGAAAGTTTGAATT+AGG | - | chr8_1:51385717-51385736 | Msa1199380:intron | 30.0% | |
| !!! | AAACCCAGAAGTTTTTTACT+AGG | - | chr8_1:51385796-51385815 | Msa1199380:intron | 30.0% |
| CAACCTAGTAAAAAACTTCT+GGG | + | chr8_1:51385802-51385821 | None:intergenic | 30.0% | |
| TACTATTAGTTACTTGTCAG+AGG | + | chr8_1:51385886-51385905 | None:intergenic | 30.0% | |
| !! | TTGAATAGGCTATTTCTTCA+AGG | - | chr8_1:51386068-51386087 | Msa1199380:intron | 30.0% |
| !! | GATTTTTGTATTTCTGAGCA+TGG | + | chr8_1:51386175-51386194 | None:intergenic | 30.0% |
| TCAGAAATACAAAAATCGTC+AGG | - | chr8_1:51386178-51386197 | Msa1199380:intron | 30.0% | |
| TGAAAGAGAAGAAAGAAAGA+AGG | - | chr8_1:51386207-51386226 | Msa1199380:intron | 30.0% | |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | + | chr8_1:51383680-51383699 | None:intergenic | 35.0% |
| GATATCAACCACATTGAATC+TGG | - | chr8_1:51383728-51383747 | Msa1199380:CDS | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | + | chr8_1:51383761-51383780 | None:intergenic | 35.0% | |
| ! | CTTCGAGTTCTTATCAAGAA+CGG | - | chr8_1:51383840-51383859 | Msa1199380:CDS | 35.0% |
| AAGCTAACATCAGGAACTAA+AGG | + | chr8_1:51384016-51384035 | None:intergenic | 35.0% | |
| ! | AGTTCCTGATGTTAGCTTAT+TGG | - | chr8_1:51384018-51384037 | Msa1199380:CDS | 35.0% |
| ! | GTTCCTGATGTTAGCTTATT+GGG | - | chr8_1:51384019-51384038 | Msa1199380:CDS | 35.0% |
| ! | GTCACGTGATGTGATTTTAT+TGG | - | chr8_1:51384041-51384060 | Msa1199380:CDS | 35.0% |
| CGTCCCAGTAAATTCAAAAA+TGG | + | chr8_1:51384097-51384116 | None:intergenic | 35.0% | |
| ATTGCGAAAAATAGCCATGA+CGG | - | chr8_1:51384266-51384285 | Msa1199380:intron | 35.0% | |
| ! | CCTTTACTGATTGGATATGA+CGG | + | chr8_1:51384317-51384336 | None:intergenic | 35.0% |
| CGTCATATCCAATCAGTAAA+GGG | - | chr8_1:51384315-51384334 | Msa1199380:intron | 35.0% | |
| !!! | AAGGGCATCATAGTGTTTTA+TGG | - | chr8_1:51384333-51384352 | Msa1199380:intron | 35.0% |
| ! | TTGTAGCCAGTGTTATTGAT+GGG | + | chr8_1:51384398-51384417 | None:intergenic | 35.0% |
| ! | ATTGTAGCCAGTGTTATTGA+TGG | + | chr8_1:51384399-51384418 | None:intergenic | 35.0% |
| GTGCTACACTATTAAGTACA+AGG | + | chr8_1:51384445-51384464 | None:intergenic | 35.0% | |
| AAACAGTCACAGTAGTTAAC+TGG | + | chr8_1:51384618-51384637 | None:intergenic | 35.0% | |
| TAAAGGAGAACCAGATACAA+TGG | + | chr8_1:51384648-51384667 | None:intergenic | 35.0% | |
| ! | TAAATGCTACGTACTGGTAA+AGG | + | chr8_1:51384665-51384684 | None:intergenic | 35.0% |
| CTTAGATAAATGCTACGTAC+TGG | + | chr8_1:51384671-51384690 | None:intergenic | 35.0% | |
| CAGTACGTAGCATTTATCTA+AGG | - | chr8_1:51384669-51384688 | Msa1199380:intron | 35.0% | |
| TTCCATCATCCATGTTAGAA+GGG | - | chr8_1:51384765-51384784 | Msa1199380:intron | 35.0% | |
| AATCACAATCCCTTCTAACA+TGG | + | chr8_1:51384777-51384796 | None:intergenic | 35.0% | |
| TAATTCAAATGCATGCCTCA+CGG | + | chr8_1:51384958-51384977 | None:intergenic | 35.0% | |
| AGAACATCTAACATCGTTCT+AGG | + | chr8_1:51385142-51385161 | None:intergenic | 35.0% | |
| TATGGGTTTACTCCAATCTT+TGG | - | chr8_1:51385287-51385306 | Msa1199380:intron | 35.0% | |
| ACCAATATCATTTAATGGCG+TGG | - | chr8_1:51385428-51385447 | Msa1199380:intron | 35.0% | |
| AATATCATTTAATGGCGTGG+CGG | - | chr8_1:51385431-51385450 | Msa1199380:intron | 35.0% | |
| ATCCTTGCACAAATTGTCTA+TGG | + | chr8_1:51385472-51385491 | None:intergenic | 35.0% | |
| ACTAAGATCCAGCAAAAAGA+TGG | + | chr8_1:51385683-51385702 | None:intergenic | 35.0% | |
| CCAACCTAGTAAAAAACTTC+TGG | + | chr8_1:51385803-51385822 | None:intergenic | 35.0% | |
| !!! | CCAGAAGTTTTTTACTAGGT+TGG | - | chr8_1:51385800-51385819 | Msa1199380:intron | 35.0% |
| !! | TTTTTACTAGGTTGGAAGCT+CGG | - | chr8_1:51385808-51385827 | Msa1199380:intron | 35.0% |
| TAGTTACTTGTCAGAGGTAA+TGG | + | chr8_1:51385880-51385899 | None:intergenic | 35.0% | |
| AAGTATATCAAGGTACAGTG+TGG | - | chr8_1:51386121-51386140 | Msa1199380:intron | 35.0% | |
| AAAGGTAACATCATGTATGC+TGG | + | chr8_1:51386237-51386256 | None:intergenic | 35.0% | |
| TTGAGCATATGTATGTTGCA+TGG | + | chr8_1:51386570-51386589 | None:intergenic | 35.0% | |
| AGAGATTAAGCGTCACTATG+TGG | - | chr8_1:51383694-51383713 | Msa1199380:CDS | 40.0% | |
| GCACAAAACCAGATTCAATG+TGG | + | chr8_1:51383739-51383758 | None:intergenic | 40.0% | |
| AAGAGTTCAACAAAGCGTAC+TGG | - | chr8_1:51383785-51383804 | Msa1199380:CDS | 40.0% | |
| TTCTTATCAAGAACGGCGAA+AGG | - | chr8_1:51383847-51383866 | Msa1199380:CDS | 40.0% | |
| TCTTATCAAGAACGGCGAAA+GGG | - | chr8_1:51383848-51383867 | Msa1199380:CDS | 40.0% | |
| TGACCCAATAAGCTAACATC+AGG | + | chr8_1:51384025-51384044 | None:intergenic | 40.0% | |
| !! | ATGTGTCGGTGTTACAATTG+CGG | - | chr8_1:51384243-51384262 | Msa1199380:intron | 40.0% |
| !! | AAAATAGCCATGACGGATTG+CGG | - | chr8_1:51384273-51384292 | Msa1199380:intron | 40.0% |
| ! | GGATTGCGGTAACAGATTTT+TGG | - | chr8_1:51384287-51384306 | Msa1199380:intron | 40.0% |
| CCGTCATATCCAATCAGTAA+AGG | - | chr8_1:51384314-51384333 | Msa1199380:intron | 40.0% | |
| CTATGATGCCCTTTACTGAT+TGG | + | chr8_1:51384326-51384345 | None:intergenic | 40.0% | |
| ! | GGCATCATAGTGTTTTATGG+TGG | - | chr8_1:51384336-51384355 | Msa1199380:intron | 40.0% |
| ! | TGTAGCCAGTGTTATTGATG+GGG | + | chr8_1:51384397-51384416 | None:intergenic | 40.0% |
| GTTCCATCATCCATGTTAGA+AGG | - | chr8_1:51384764-51384783 | Msa1199380:intron | 40.0% | |
| ATCCCTTCTAACATGGATGA+TGG | + | chr8_1:51384770-51384789 | None:intergenic | 40.0% | |
| !! | AGTATTGGTAGGTCATTTGG+AGG | - | chr8_1:51384909-51384928 | Msa1199380:intron | 40.0% |
| GTGAGGCATGCATTTGAATT+AGG | - | chr8_1:51384957-51384976 | Msa1199380:intron | 40.0% | |
| AGTGTAACTCACTGCAACAT+TGG | + | chr8_1:51385245-51385264 | None:intergenic | 40.0% | |
| AATGTTGCAGTGAGTTACAC+TGG | - | chr8_1:51385244-51385263 | Msa1199380:intron | 40.0% | |
| !! | GTTACACTGGATTGTTTTGC+TGG | - | chr8_1:51385257-51385276 | Msa1199380:intron | 40.0% |
| GCCACGCCATTAAATGATAT+TGG | + | chr8_1:51385432-51385451 | None:intergenic | 40.0% | |
| CTTGCACAAATTGTCTATGG+TGG | + | chr8_1:51385469-51385488 | None:intergenic | 40.0% | |
| CACCATAGACAATTTGTGCA+AGG | - | chr8_1:51385467-51385486 | Msa1199380:intron | 40.0% | |
| !!! | GGCTGCAATGCTGTTTTTTA+CGG | - | chr8_1:51385513-51385532 | Msa1199380:intron | 40.0% |
| !!! | TGCAATGCTGTTTTTTACGG+CGG | - | chr8_1:51385516-51385535 | Msa1199380:intron | 40.0% |
| !!! | TCAAGAGTTTTGATTCCAGC+AGG | + | chr8_1:51386356-51386375 | None:intergenic | 40.0% |
| ! | GATACAACTGGTTCTCCTAT+AGG | + | chr8_1:51386431-51386450 | None:intergenic | 40.0% |
| GAACCAGTTGTATCTACAGT+TGG | - | chr8_1:51386437-51386456 | Msa1199380:CDS | 40.0% | |
| GTACCAACTGTAGATACAAC+TGG | + | chr8_1:51386443-51386462 | None:intergenic | 40.0% | |
| ! | CCAGTTAATTTTACTGCTCC+CGG | - | chr8_1:51386464-51386483 | Msa1199380:CDS | 40.0% |
| AAGACCATAATCCATGTCTC+CGG | + | chr8_1:51386486-51386505 | None:intergenic | 40.0% | |
| !! | TTTCTGAGACAGTTATGCCA+GGG | - | chr8_1:51386513-51386532 | Msa1199380:CDS | 40.0% |
| ! | TCAACAAAGCGTACTGGTGA+AGG | - | chr8_1:51383791-51383810 | Msa1199380:CDS | 45.0% |
| TGAAGGAGGAGCTGTGAAAA+GGG | - | chr8_1:51383808-51383827 | Msa1199380:CDS | 45.0% | |
| CTATGTTCATCTTCCGTCCA+AGG | + | chr8_1:51383878-51383897 | None:intergenic | 45.0% | |
| CTTGGACGGAAGATGAACAT+AGG | - | chr8_1:51383876-51383895 | Msa1199380:CDS | 45.0% | |
| CTTTCCCCCATCAATAACAC+TGG | - | chr8_1:51384389-51384408 | Msa1199380:intron | 45.0% | |
| ! | GTAGCCAGTGTTATTGATGG+GGG | + | chr8_1:51384396-51384415 | None:intergenic | 45.0% |
| AGGCACAGCTAACATAGCTT+AGG | + | chr8_1:51384557-51384576 | None:intergenic | 45.0% | |
| ! | TGACGGTTGACTCAACTAGT+AGG | - | chr8_1:51384879-51384898 | Msa1199380:intron | 45.0% |
| TAAGTGTTCACTGAACCGTG+AGG | - | chr8_1:51384940-51384959 | Msa1199380:intron | 45.0% | |
| GTAACTCACTGCAACATTGG+AGG | + | chr8_1:51385242-51385261 | None:intergenic | 45.0% | |
| ! | TTGTGCAAGGATGCTTGCTA+TGG | - | chr8_1:51385480-51385499 | Msa1199380:intron | 45.0% |
| !! | TGTGCAAGGATGCTTGCTAT+GGG | - | chr8_1:51385481-51385500 | Msa1199380:intron | 45.0% |
| ! | ACGAGTCTCCATCTTTTTGC+TGG | - | chr8_1:51385672-51385691 | Msa1199380:intron | 45.0% |
| !! | TAGGCTATTTCTTCAAGGCC+TGG | - | chr8_1:51386073-51386092 | Msa1199380:intron | 45.0% |
| GTGACTGGCGAAGTATATCA+AGG | - | chr8_1:51386111-51386130 | Msa1199380:intron | 45.0% | |
| TTGCTTGCTTGACCGGTAAT+TGG | + | chr8_1:51386293-51386312 | None:intergenic | 45.0% | |
| AGCAGAATTGCTTGCTTGAC+CGG | + | chr8_1:51386300-51386319 | None:intergenic | 45.0% | |
| !!! | GAGTTTTGATTCCAGCAGGT+GGG | + | chr8_1:51386352-51386371 | None:intergenic | 45.0% |
| !!! | AGAGTTTTGATTCCAGCAGG+TGG | + | chr8_1:51386353-51386372 | None:intergenic | 45.0% |
| CCGGGAGCAGTAAAATTAAC+TGG | + | chr8_1:51386467-51386486 | None:intergenic | 45.0% | |
| AGACCATAATCCATGTCTCC+GGG | + | chr8_1:51386485-51386504 | None:intergenic | 45.0% | |
| ! | GGAGACATGGATTATGGTCT+TGG | - | chr8_1:51386485-51386504 | Msa1199380:CDS | 45.0% |
| GGCATAACTGTCTCAGAAAC+TGG | + | chr8_1:51386512-51386531 | None:intergenic | 45.0% | |
| !! | GTTTCTGAGACAGTTATGCC+AGG | - | chr8_1:51386512-51386531 | Msa1199380:CDS | 45.0% |
| !! | TTCTGAGACAGTTATGCCAG+GGG | - | chr8_1:51386514-51386533 | Msa1199380:CDS | 45.0% |
| TGTTGCATGGCATATGTCGT+AGG | + | chr8_1:51386557-51386576 | None:intergenic | 45.0% | |
| AAATGGGTAGCAGCTGTGAG+TGG | - | chr8_1:51383564-51383583 | Msa1199380:CDS | 50.0% | |
| ! | TGCATTGGCGAATTATCCCG+AGG | - | chr8_1:51383616-51383635 | Msa1199380:CDS | 50.0% |
| GGATCGATGGGAGAAAATCG+CGG | - | chr8_1:51383646-51383665 | Msa1199380:CDS | 50.0% | |
| AAAATCGCGGCTGATGTACC+CGG | - | chr8_1:51383659-51383678 | Msa1199380:CDS | 50.0% | |
| ! | ACAAAGCGTACTGGTGAAGG+AGG | - | chr8_1:51383794-51383813 | Msa1199380:CDS | 50.0% |
| GTGAAGGAGGAGCTGTGAAA+AGG | - | chr8_1:51383807-51383826 | Msa1199380:CDS | 50.0% | |
| GAAGGAGGAGCTGTGAAAAG+GGG | - | chr8_1:51383809-51383828 | Msa1199380:CDS | 50.0% | |
| AGCTGTGAAAAGGGGAGCTA+AGG | - | chr8_1:51383817-51383836 | Msa1199380:CDS | 50.0% | |
| TCTGTTACCGCAATCCGTCA+TGG | + | chr8_1:51384283-51384302 | None:intergenic | 50.0% | |
| TCGTCAAATAGCGGCTGTAG+TGG | + | chr8_1:51384519-51384538 | None:intergenic | 50.0% | |
| !! | GTGCAAGGATGCTTGCTATG+GGG | - | chr8_1:51385482-51385501 | Msa1199380:intron | 50.0% |
| !! | TGCAAGGATGCTTGCTATGG+GGG | - | chr8_1:51385483-51385502 | Msa1199380:intron | 50.0% |
| CAGTTTCGTCGACGTCAGAA+TGG | + | chr8_1:51385548-51385567 | None:intergenic | 50.0% | |
| TGACGTCGACGAAACTGATC+AGG | - | chr8_1:51385551-51385570 | Msa1199380:intron | 50.0% | |
| !! | GCATGGCTTGCTACTTGTGT+AGG | + | chr8_1:51386158-51386177 | None:intergenic | 50.0% |
| GGAGACATTTCAGCACCTCA+AGG | - | chr8_1:51386266-51386285 | Msa1199380:CDS | 50.0% | |
| GCACCTCAAGGACCAATTAC+CGG | - | chr8_1:51386278-51386297 | Msa1199380:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | + | chr8_1:51386284-51386303 | None:intergenic | 50.0% | |
| GGTCAAGCAAGCAATTCTGC+TGG | - | chr8_1:51386299-51386318 | Msa1199380:CDS | 50.0% | |
| ATACACGCTGCTCCTAGGAT+CGG | - | chr8_1:51386401-51386420 | Msa1199380:CDS | 50.0% | |
| ! | TTTTACTGCTCCCGGAGACA+TGG | - | chr8_1:51386472-51386491 | Msa1199380:CDS | 50.0% |
| GAATTATCCCGAGGACGCTG+TGG | - | chr8_1:51383625-51383644 | Msa1199380:CDS | 55.0% | |
| AAATCGCGGCTGATGTACCC+GGG | - | chr8_1:51383660-51383679 | Msa1199380:CDS | 55.0% | |
| !! | AACGGCGAAAGGGTGTTCCT+TGG | - | chr8_1:51383858-51383877 | Msa1199380:CDS | 55.0% |
| !! | GCGAAAGGGTGTTCCTTGGA+CGG | - | chr8_1:51383862-51383881 | Msa1199380:CDS | 55.0% |
| !! | GCTTGCTATGGGGGTGCTAT+TGG | - | chr8_1:51385492-51385511 | Msa1199380:intron | 55.0% |
| CTTCAAGGCCTGGAGAACCA+TGG | - | chr8_1:51386083-51386102 | Msa1199380:intron | 55.0% | |
| AAGGCCTGGAGAACCATGGA+TGG | - | chr8_1:51386087-51386106 | Msa1199380:intron | 55.0% | |
| AGGCCTGGAGAACCATGGAT+GGG | - | chr8_1:51386088-51386107 | Msa1199380:intron | 55.0% | |
| AGAACCATGGATGGGGTGAC+TGG | - | chr8_1:51386096-51386115 | Msa1199380:intron | 55.0% | |
| TTGATTCCAGCAGGTGGGAC+TGG | + | chr8_1:51386347-51386366 | None:intergenic | 55.0% | |
| AGCGTGTATTCCAGCAGGTG+GGG | + | chr8_1:51386390-51386409 | None:intergenic | 55.0% | |
| CAGCGTGTATTCCAGCAGGT+GGG | + | chr8_1:51386391-51386410 | None:intergenic | 55.0% | |
| CTGGAATACACGCTGCTCCT+AGG | - | chr8_1:51386396-51386415 | Msa1199380:CDS | 55.0% | |
| TACACGCTGCTCCTAGGATC+GGG | - | chr8_1:51386402-51386421 | Msa1199380:CDS | 55.0% | |
| CCTATAGGTTGCCCGATCCT+AGG | + | chr8_1:51386416-51386435 | None:intergenic | 55.0% | |
| CCTAGGATCGGGCAACCTAT+AGG | - | chr8_1:51386413-51386432 | Msa1199380:CDS | 55.0% | |
| ! | GCTCCCGGAGACATGGATTA+TGG | - | chr8_1:51386479-51386498 | Msa1199380:CDS | 55.0% |
| !! | CCAGGGGTACCAATGAACCT+GGG | - | chr8_1:51386530-51386549 | Msa1199380:CDS | 55.0% |
| GTCGTAGGACCCAGGTTCAT+TGG | + | chr8_1:51386542-51386561 | None:intergenic | 55.0% | |
| TGGCATATGTCGTAGGACCC+AGG | + | chr8_1:51386550-51386569 | None:intergenic | 55.0% | |
| CATCGATCCACAGCGTCCTC+GGG | + | chr8_1:51383635-51383654 | None:intergenic | 60.0% | |
| CCATCGATCCACAGCGTCCT+CGG | + | chr8_1:51383636-51383655 | None:intergenic | 60.0% | |
| CGAGGACGCTGTGGATCGAT+GGG | - | chr8_1:51383634-51383653 | Msa1199380:CDS | 60.0% | |
| GGCCTGGAGAACCATGGATG+GGG | - | chr8_1:51386089-51386108 | Msa1199380:intron | 60.0% | |
| CACCCCATCCATGGTTCTCC+AGG | + | chr8_1:51386094-51386113 | None:intergenic | 60.0% | |
| TTCGCCAGTCACCCCATCCA+TGG | + | chr8_1:51386103-51386122 | None:intergenic | 60.0% | |
| ATTCCAGCAGGTGGGACTGG+AGG | + | chr8_1:51386344-51386363 | None:intergenic | 60.0% | |
| TGTATTCCAGCAGGTGGGGC+TGG | + | chr8_1:51386386-51386405 | None:intergenic | 60.0% | |
| GCAGCGTGTATTCCAGCAGG+TGG | + | chr8_1:51386392-51386411 | None:intergenic | 60.0% | |
| GGAGCAGCGTGTATTCCAGC+AGG | + | chr8_1:51386395-51386414 | None:intergenic | 60.0% | |
| !! | GCCAGGGGTACCAATGAACC+TGG | - | chr8_1:51386529-51386548 | Msa1199380:CDS | 60.0% |
| CCCAGGTTCATTGGTACCCC+TGG | + | chr8_1:51386533-51386552 | None:intergenic | 60.0% | |
| CCGAGGACGCTGTGGATCGA+TGG | - | chr8_1:51383633-51383652 | Msa1199380:CDS | 65.0% | |
| AATCCTCCAGCCCCACCTGC+TGG | - | chr8_1:51386377-51386396 | Msa1199380:CDS | 65.0% | |
| ATTCCAGCAGGTGGGGCTGG+AGG | + | chr8_1:51386383-51386402 | None:intergenic | 65.0% | |
| GCTCCTCCAGTCCCACCTGC+TGG | - | chr8_1:51386338-51386357 | Msa1199380:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 51383557 | 51386595 | 51383557 | ID=Msa1199380;Name=Msa1199380 |
| chr8_1 | mRNA | 51383557 | 51386595 | 51383557 | ID=Msa1199380-mRNA-1;Parent=Msa1199380;Name=Msa1199380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|286 |
| chr8_1 | exon | 51386255 | 51386595 | 51386255 | ID=Msa1199380-mRNA-1:exon:16224;Parent=Msa1199380-mRNA-1 |
| chr8_1 | exon | 51383557 | 51384076 | 51383557 | ID=Msa1199380-mRNA-1:exon:16223;Parent=Msa1199380-mRNA-1 |
| chr8_1 | CDS | 51386255 | 51386595 | 51386255 | ID=Msa1199380-mRNA-1:cds;Parent=Msa1199380-mRNA-1 |
| chr8_1 | CDS | 51383557 | 51384076 | 51383557 | ID=Msa1199380-mRNA-1:cds;Parent=Msa1199380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
