AlfalfaGEDB | Msa1199380

M. sativa cultivar zhongmu-4 / Msa1199380

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199380	XP_003628698.1	93.448	290	15	1	1	286	1	290	0.0	556

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199380	sp\|Q9FNN6\|SRM1_ARATH	50.662	302	118	7	1	282	3	293	2.70e-85	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1199380	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1199380	Msa1290500	0.890664	8.028158e-74	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199380	MtrunA17_Chr8g0364731	93.182	176	8	1	115	286	10	185	4.25e-116	331
Msa1199380	MtrunA17_Chr8g0365011	59.091	308	79	7	1	285	1	284	7.08e-112	324
Msa1199380	MtrunA17_Chr1g0162081	58.000	300	96	5	1	281	3	291	1.02e-109	319
Msa1199380	MtrunA17_Chr8g0364741	93.913	115	7	0	1	115	1	115	9.50e-77	229
Msa1199380	MtrunA17_Chr4g0062741	44.251	287	99	11	6	245	4	276	7.15e-62	197
Msa1199380	MtrunA17_Chr1g0210471	54.444	180	76	3	8	183	22	199	1.14e-52	172
Msa1199380	MtrunA17_Chr5g0436501	48.634	183	92	1	3	183	20	202	2.71e-51	169
Msa1199380	MtrunA17_Chr3g0104071	47.340	188	89	3	2	181	35	220	6.93e-51	170
Msa1199380	MtrunA17_Chr5g0429521	48.066	181	83	4	2	175	23	199	1.81e-49	166
Msa1199380	MtrunA17_Chr7g0241761	46.739	184	87	2	9	183	34	215	1.76e-47	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1199380	AT5G08520.1	50.662	302	118	7	1	282	3	293	2.74e-86	260
Msa1199380	AT5G23650.1	38.485	330	141	7	3	272	6	333	6.27e-57	186
Msa1199380	AT1G49010.1	41.971	274	121	6	10	250	8	276	3.44e-50	168
Msa1199380	AT5G04760.1	52.941	170	75	3	6	175	2	166	7.71e-50	164
Msa1199380	AT2G38090.1	47.283	184	79	3	8	175	27	208	5.33e-49	164
Msa1199380	AT5G58900.1	46.703	182	84	2	5	175	29	208	1.54e-48	163
Msa1199380	AT5G05790.2	47.568	185	85	5	7	183	28	208	4.89e-47	159
Msa1199380	AT5G05790.1	47.568	185	85	5	7	183	28	208	4.89e-47	159
Msa1199380	AT3G11280.2	50.610	164	77	2	10	173	33	192	1.33e-46	157
Msa1199380	AT3G11280.1	50.610	164	77	2	10	173	33	192	1.33e-46	157

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Find 84 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGCGGCTGATGTACC+CGG	0.524444	8_1:-51386471	Msa1199380:CDS
AAAGAATCATAATCTGGCAG+AGG	0.587497	8_1:+51386372	None:intergenic
AAAGGTAACATCATGTATGC+TGG	0.520807	8_1:+51383896	None:intergenic
AAATCGCGGCTGATGTACCC+GGG	0.624584	8_1:-51386470	Msa1199380:CDS
AAATGGGTAGCAGCTGTGAG+TGG	0.631015	8_1:-51386566	Msa1199380:CDS
AACGGCGAAAGGGTGTTCCT+TGG	0.495446	8_1:-51386272	Msa1199380:CDS
AAGACCATAATCCATGTCTC+CGG	0.538089	8_1:+51383647	None:intergenic
AAGAGTTCAACAAAGCGTAC+TGG	0.557383	8_1:-51386345	Msa1199380:CDS
AAGGCCTGGAGAACCATGGA+TGG	0.559427	8_1:-51384043	Msa1199380:CDS
AAGTATATCAAGGTACAGTG+TGG	0.727880	8_1:-51384009	Msa1199380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACGCTATAGTTGCA+AGG	+	chr8_1:51383934-51383953	None:intergenic	30.0%
CTAAACAAAAAAACTTAGGG+AGG	-	chr8_1:51384121-51384140	Msa1199380:intron	30.0%
ATATCAGTATCGTCAAATAG+CGG	+	chr8_1:51384528-51384547	None:intergenic	30.0%
ATAAATACATTGGATCACAG+AGG	+	chr8_1:51384838-51384857	None:intergenic	30.0%
ACTTACTACACTTCTAATGA+CGG	-	chr8_1:51384862-51384881	Msa1199380:intron	30.0%
AATGTATCAAAGTCTAAACG+AGG	+	chr8_1:51385196-51385215	None:intergenic	30.0%
ATATCAGATCTGTGAAACAA+TGG	-	chr8_1:51385321-51385340	Msa1199380:intron	30.0%
ATCTGTGAAACAATGGTATT+AGG	-	chr8_1:51385328-51385347	Msa1199380:intron	30.0%
AATGTAGAACAATGTATTGC+TGG	-	chr8_1:51385368-51385387	Msa1199380:intron	30.0%
CATTTGATCATCTTTGTAGA+TGG	-	chr8_1:51385628-51385647	Msa1199380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	51383557	51386595	51383557	ID=Msa1199380;Name=Msa1199380
chr8_1	mRNA	51383557	51386595	51383557	ID=Msa1199380-mRNA-1;Parent=Msa1199380;Name=Msa1199380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|286
chr8_1	exon	51386255	51386595	51386255	ID=Msa1199380-mRNA-1:exon:16224;Parent=Msa1199380-mRNA-1
chr8_1	exon	51383557	51384076	51383557	ID=Msa1199380-mRNA-1:exon:16223;Parent=Msa1199380-mRNA-1
chr8_1	CDS	51386255	51386595	51386255	ID=Msa1199380-mRNA-1:cds;Parent=Msa1199380-mRNA-1
chr8_1	CDS	51383557	51384076	51383557	ID=Msa1199380-mRNA-1:cds;Parent=Msa1199380-mRNA-1

Gene Sequence

>Msa1199380

ATGGATGAAATGGGTAGCAGCTGTGAGTGGAGCAGAGATCAAGACAAAGCATTTGAAAATGCATTGGCGAATTATCCCGAGGACGCTGTGGATCGATGGGAGAAAATCGCGGCTGATGTACCCGGGAAAACTTTAGAAGAGATTAAGCGTCACTATGTGGTTTTGTTTGATGATATCAACCACATTGAATCTGGTTTTGTGCCTCTGCCAGATTATGATTCTTTTTCAAAGAGTTCAACAAAGCGTACTGGTGAAGGAGGAGCTGTGAAAAGGGGAGCTAAGGCTTCGAGTTCTTATCAAGAACGGCGAAAGGGTGTTCCTTGGACGGAAGATGAACATAGGCTATTTCTTCAAGGCCTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGTACAGTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATACAAAAATCGTCAGGATTCAATGAAAGAGAAGAAAGAAAGAAGGCGATCCAGCATACATGATGTTACCTTTGTAAAAAATGGAGACATTTCAGCACCTCAAGGACCAATTACCGGTCAAGCAAGCAATTCTGCTGGACAATCAGCTGAACAAGCTCCTCCAGTCCCACCTGCTGGAATCAAAACTCTTGATAATCCTCCAGCCCCACCTGCTGGAATACACGCTGCTCCTAGGATCGGGCAACCTATAGGAGAACCAGTTGTATCTACAGTTGGTACTCCAGTTAATTTTACTGCTCCCGGAGACATGGATTATGGTCTTGGACCAGTTTCTGAGACAGTTATGCCAGGGGTACCAATGAACCTGGGTCCTACGACATATGCCATGCAACATACATATGCTCAATCATGA

Protein sequence

>Msa1199380

MDEMGSSCEWSRDQDKAFENALANYPEDAVDRWEKIAADVPGKTLEEIKRHYVVLFDDINHIESGFVPLPDYDSFSKSSTKRTGEGGAVKRGAKASSSYQERRKGVPWTEDEHRLFLQGLENHGWGDWRSISRYSVVTRTPTQVASHAQKYKNRQDSMKEKKERRRSSIHDVTFVKNGDISAPQGPITGQASNSAGQSAEQAPPVPPAGIKTLDNPPAPPAGIHAAPRIGQPIGEPVVSTVGTPVNFTAPGDMDYGLGPVSETVMPGVPMNLGPTTYAMQHTYAQS*