Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290500 | sp|Q9FNN6|SRM1_ARATH | 50.662 | 302 | 118 | 7 | 1 | 282 | 3 | 293 | 2.70e-85 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290500 | G7I733 | 93.448 | 290 | 15 | 1 | 1 | 286 | 1 | 290 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1290500 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1199380 | Msa1290500 | 0.890664 | 8.028158e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290500 | MtrunA17_Chr8g0364731 | 93.182 | 176 | 8 | 1 | 115 | 286 | 10 | 185 | 4.25e-116 | 331 |
| Msa1290500 | MtrunA17_Chr8g0365011 | 59.091 | 308 | 79 | 7 | 1 | 285 | 1 | 284 | 7.08e-112 | 324 |
| Msa1290500 | MtrunA17_Chr1g0162081 | 58.000 | 300 | 96 | 5 | 1 | 281 | 3 | 291 | 1.02e-109 | 319 |
| Msa1290500 | MtrunA17_Chr8g0364741 | 93.913 | 115 | 7 | 0 | 1 | 115 | 1 | 115 | 9.50e-77 | 229 |
| Msa1290500 | MtrunA17_Chr4g0062741 | 44.251 | 287 | 99 | 11 | 6 | 245 | 4 | 276 | 7.15e-62 | 197 |
| Msa1290500 | MtrunA17_Chr1g0210471 | 54.444 | 180 | 76 | 3 | 8 | 183 | 22 | 199 | 1.14e-52 | 172 |
| Msa1290500 | MtrunA17_Chr5g0436501 | 48.634 | 183 | 92 | 1 | 3 | 183 | 20 | 202 | 2.71e-51 | 169 |
| Msa1290500 | MtrunA17_Chr3g0104071 | 47.340 | 188 | 89 | 3 | 2 | 181 | 35 | 220 | 6.93e-51 | 170 |
| Msa1290500 | MtrunA17_Chr5g0429521 | 48.066 | 181 | 83 | 4 | 2 | 175 | 23 | 199 | 1.81e-49 | 166 |
| Msa1290500 | MtrunA17_Chr7g0241761 | 46.739 | 184 | 87 | 2 | 9 | 183 | 34 | 215 | 1.76e-47 | 160 |
| Msa1290500 | MtrunA17_Chr5g0432921 | 40.230 | 174 | 84 | 8 | 5 | 170 | 16 | 177 | 1.06e-25 | 101 |
| Msa1290500 | MtrunA17_Chr5g0432941 | 37.870 | 169 | 94 | 6 | 5 | 170 | 17 | 177 | 6.82e-25 | 99.4 |
| Msa1290500 | MtrunA17_Chr5g0440731 | 56.250 | 80 | 34 | 1 | 102 | 180 | 101 | 180 | 4.43e-24 | 99.0 |
| Msa1290500 | MtrunA17_Chr6g0488471 | 67.123 | 73 | 22 | 1 | 100 | 172 | 91 | 161 | 5.25e-24 | 98.6 |
| Msa1290500 | MtrunA17_Chr4g0055931 | 58.974 | 78 | 30 | 1 | 95 | 172 | 84 | 159 | 1.01e-23 | 98.6 |
| Msa1290500 | MtrunA17_Chr2g0331031 | 60.976 | 82 | 26 | 2 | 95 | 172 | 94 | 173 | 2.14e-23 | 97.8 |
| Msa1290500 | MtrunA17_Chr5g0440741 | 59.494 | 79 | 30 | 2 | 103 | 180 | 98 | 175 | 2.48e-23 | 96.7 |
| Msa1290500 | MtrunA17_Chr8g0389241 | 63.014 | 73 | 24 | 1 | 100 | 172 | 99 | 168 | 2.75e-23 | 96.3 |
| Msa1290500 | MtrunA17_Chr5g0409841 | 44.954 | 109 | 54 | 1 | 102 | 210 | 88 | 190 | 3.05e-23 | 95.1 |
| Msa1290500 | MtrunA17_Chr1g0155181 | 56.522 | 69 | 30 | 0 | 4 | 72 | 1 | 69 | 1.83e-21 | 86.3 |
| Msa1290500 | MtrunA17_Chr5g0415191 | 70.175 | 57 | 17 | 0 | 95 | 151 | 91 | 147 | 7.26e-20 | 87.8 |
| Msa1290500 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 10 | 74 | 16 | 80 | 1.16e-19 | 81.3 |
| Msa1290500 | MtrunA17_Chr4g0059701 | 71.154 | 52 | 15 | 0 | 100 | 151 | 78 | 129 | 1.97e-19 | 85.9 |
| Msa1290500 | MtrunA17_Chr3g0141601 | 53.623 | 69 | 32 | 0 | 4 | 72 | 1 | 69 | 4.38e-19 | 80.1 |
| Msa1290500 | MtrunA17_Chr5g0409831 | 44.248 | 113 | 57 | 3 | 102 | 213 | 73 | 180 | 4.91e-19 | 84.0 |
| Msa1290500 | MtrunA17_Chr3g0135671 | 50.000 | 84 | 41 | 1 | 96 | 178 | 81 | 164 | 1.21e-17 | 80.1 |
| Msa1290500 | MtrunA17_Chr5g0404101 | 52.941 | 68 | 32 | 0 | 5 | 72 | 14 | 81 | 2.30e-17 | 75.9 |
| Msa1290500 | MtrunA17_Chr7g0255841 | 52.174 | 69 | 33 | 0 | 14 | 82 | 16 | 84 | 8.27e-17 | 73.9 |
| Msa1290500 | MtrunA17_Chr3g0092621 | 54.412 | 68 | 29 | 1 | 106 | 173 | 84 | 149 | 4.12e-16 | 74.3 |
| Msa1290500 | MtrunA17_Chr6g0449111 | 50.000 | 72 | 36 | 0 | 1 | 72 | 1 | 72 | 5.09e-16 | 71.6 |
| Msa1290500 | MtrunA17_Chr3g0081631 | 49.315 | 73 | 36 | 1 | 1 | 72 | 1 | 73 | 3.74e-15 | 69.7 |
| Msa1290500 | MtrunA17_Chr6g0452791 | 51.282 | 78 | 33 | 2 | 78 | 151 | 49 | 125 | 1.19e-14 | 70.5 |
| Msa1290500 | MtrunA17_Chr3g0113121 | 35.000 | 160 | 90 | 6 | 22 | 173 | 14 | 167 | 1.61e-13 | 68.2 |
| Msa1290500 | MtrunA17_Chr8g0373131 | 40.000 | 70 | 41 | 1 | 10 | 79 | 5 | 73 | 1.84e-12 | 61.6 |
| Msa1290500 | MtrunA17_Chr8g0373111 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.15e-12 | 61.6 |
| Msa1290500 | MtrunA17_Chr8g0373121 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.15e-12 | 61.6 |
| Msa1290500 | MtrunA17_Chr3g0141641 | 41.270 | 63 | 37 | 0 | 10 | 72 | 3 | 65 | 4.77e-12 | 61.2 |
| Msa1290500 | MtrunA17_Chr8g0373101 | 43.284 | 67 | 35 | 2 | 4 | 70 | 1 | 64 | 1.19e-11 | 59.3 |
| Msa1290500 | MtrunA17_Chr5g0404301 | 47.541 | 61 | 31 | 1 | 10 | 70 | 4 | 63 | 2.14e-11 | 58.5 |
| Msa1290500 | MtrunA17_Chr1g0192061 | 44.444 | 81 | 43 | 2 | 108 | 187 | 63 | 142 | 5.30e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290500 | AT5G08520.1 | 50.662 | 302 | 118 | 7 | 1 | 282 | 3 | 293 | 2.74e-86 | 260 |
| Msa1290500 | AT5G23650.1 | 38.485 | 330 | 141 | 7 | 3 | 272 | 6 | 333 | 6.27e-57 | 186 |
| Msa1290500 | AT1G49010.1 | 41.971 | 274 | 121 | 6 | 10 | 250 | 8 | 276 | 3.44e-50 | 168 |
| Msa1290500 | AT5G04760.1 | 52.941 | 170 | 75 | 3 | 6 | 175 | 2 | 166 | 7.71e-50 | 164 |
| Msa1290500 | AT2G38090.1 | 47.283 | 184 | 79 | 3 | 8 | 175 | 27 | 208 | 5.33e-49 | 164 |
| Msa1290500 | AT5G58900.1 | 46.703 | 182 | 84 | 2 | 5 | 175 | 29 | 208 | 1.54e-48 | 163 |
| Msa1290500 | AT5G05790.2 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 4.89e-47 | 159 |
| Msa1290500 | AT5G05790.1 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 4.89e-47 | 159 |
| Msa1290500 | AT3G11280.2 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 1.33e-46 | 157 |
| Msa1290500 | AT3G11280.1 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 1.33e-46 | 157 |
| Msa1290500 | AT5G01200.1 | 44.086 | 186 | 82 | 5 | 10 | 175 | 30 | 213 | 9.61e-41 | 142 |
| Msa1290500 | AT3G10580.2 | 38.136 | 236 | 110 | 8 | 10 | 233 | 8 | 219 | 1.70e-36 | 131 |
| Msa1290500 | AT3G10580.1 | 38.494 | 239 | 105 | 9 | 10 | 233 | 8 | 219 | 3.05e-36 | 131 |
| Msa1290500 | AT4G09450.1 | 42.775 | 173 | 81 | 5 | 4 | 174 | 1 | 157 | 1.19e-32 | 119 |
| Msa1290500 | AT5G47390.1 | 56.701 | 97 | 40 | 1 | 84 | 180 | 74 | 168 | 8.52e-26 | 105 |
| Msa1290500 | AT5G56840.1 | 59.740 | 77 | 30 | 1 | 101 | 177 | 86 | 161 | 1.08e-21 | 91.3 |
| Msa1290500 | AT3G10590.1 | 35.829 | 187 | 93 | 8 | 4 | 174 | 1 | 176 | 1.54e-21 | 90.5 |
| Msa1290500 | AT1G70000.1 | 70.175 | 57 | 17 | 0 | 95 | 151 | 87 | 143 | 6.08e-20 | 87.4 |
| Msa1290500 | AT1G70000.2 | 70.175 | 57 | 17 | 0 | 95 | 151 | 87 | 143 | 6.08e-20 | 87.4 |
| Msa1290500 | AT3G16350.1 | 61.765 | 68 | 18 | 1 | 84 | 151 | 123 | 182 | 1.67e-19 | 87.8 |
| Msa1290500 | AT4G39250.1 | 55.556 | 63 | 28 | 0 | 10 | 72 | 14 | 76 | 2.14e-19 | 81.6 |
| Msa1290500 | AT5G61620.1 | 51.220 | 82 | 38 | 1 | 93 | 174 | 95 | 174 | 2.95e-19 | 86.3 |
| Msa1290500 | AT1G75250.2 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 5.71e-19 | 80.5 |
| Msa1290500 | AT1G75250.1 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 2.76e-18 | 79.3 |
| Msa1290500 | AT1G74840.2 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 6.99e-18 | 81.3 |
| Msa1290500 | AT1G74840.1 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 1.00e-17 | 81.3 |
| Msa1290500 | AT1G19000.2 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.05e-17 | 80.9 |
| Msa1290500 | AT1G19000.1 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.05e-17 | 80.9 |
| Msa1290500 | AT2G21650.1 | 50.000 | 72 | 36 | 0 | 10 | 81 | 14 | 85 | 3.13e-16 | 73.2 |
| Msa1290500 | AT2G18328.1 | 55.932 | 59 | 26 | 0 | 14 | 72 | 15 | 73 | 1.66e-15 | 70.5 |
| Msa1290500 | AT1G19510.1 | 46.377 | 69 | 37 | 0 | 14 | 82 | 16 | 84 | 2.89e-14 | 67.8 |
Find 84 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGCTTGACCGGTAAT+TGG | 0.261142 | 8_3:-45376640 | None:intergenic |
| TCACAGAACAATGGATGAAA+TGG | 0.332083 | 8_3:+45373897 | None:intergenic |
| GATATCAACCACATTGAATC+TGG | 0.342793 | 8_3:+45374078 | Msa1290500:CDS |
| CCGGGAGCAGTAAAATTAAC+TGG | 0.384224 | 8_3:-45376814 | None:intergenic |
| GGCATAACTGTCTCAGAAAC+TGG | 0.395799 | 8_3:-45376859 | None:intergenic |
| CACCCCATCCATGGTTCTCC+AGG | 0.402855 | 8_3:-45376441 | None:intergenic |
| GGAGACATGGATTATGGTCT+TGG | 0.404056 | 8_3:+45376835 | Msa1290500:CDS |
| GCTCCCGGAGACATGGATTA+TGG | 0.405160 | 8_3:+45376829 | Msa1290500:CDS |
| TTGAATAGGCTATTTCTTCA+AGG | 0.405967 | 8_3:+45376418 | Msa1290500:intron |
| GATACAACTGGTTCTCCTAT+AGG | 0.406805 | 8_3:-45376778 | None:intergenic |
| CCATCGATCCACAGCGTCCT+CGG | 0.411794 | 8_3:-45373983 | None:intergenic |
| AGCAGAATTGCTTGCTTGAC+CGG | 0.418729 | 8_3:-45376647 | None:intergenic |
| TTGATTCCAGCAGGTGGGAC+TGG | 0.426711 | 8_3:-45376694 | None:intergenic |
| TGTATTCCAGCAGGTGGGGC+TGG | 0.439045 | 8_3:-45376733 | None:intergenic |
| CCTAGGATCGGGCAACCTAT+AGG | 0.445645 | 8_3:+45376763 | Msa1290500:CDS |
| GCACCTCAAGGACCAATTAC+CGG | 0.448210 | 8_3:+45376628 | Msa1290500:CDS |
| AATCCTCCAGCCCCACCTGC+TGG | 0.449144 | 8_3:+45376727 | Msa1290500:CDS |
| GTCGTAGGACCCAGGTTCAT+TGG | 0.464354 | 8_3:-45376889 | None:intergenic |
| GCTCCTCCAGTCCCACCTGC+TGG | 0.465316 | 8_3:+45376688 | Msa1290500:CDS |
| CCCAGGTTCATTGGTACCCC+TGG | 0.466627 | 8_3:-45376880 | None:intergenic |
| TACACGCTGCTCCTAGGATC+GGG | 0.467978 | 8_3:+45376752 | Msa1290500:CDS |
| CTGGAATACACGCTGCTCCT+AGG | 0.469742 | 8_3:+45376746 | Msa1290500:CDS |
| TAGGCTATTTCTTCAAGGCC+TGG | 0.472954 | 8_3:+45376423 | Msa1290500:intron |
| GTGAAGGAGGAGCTGTGAAA+AGG | 0.473544 | 8_3:+45374157 | Msa1290500:CDS |
| CCTATAGGTTGCCCGATCCT+AGG | 0.480400 | 8_3:-45376763 | None:intergenic |
| CACAGAACAATGGATGAAAT+GGG | 0.481775 | 8_3:+45373898 | None:intergenic |
| TGAAGGAGGAGCTGTGAAAA+GGG | 0.482163 | 8_3:+45374158 | Msa1290500:CDS |
| GTACCAACTGTAGATACAAC+TGG | 0.482219 | 8_3:-45376790 | None:intergenic |
| AGAACCATGGATGGGGTGAC+TGG | 0.483144 | 8_3:+45376446 | Msa1290500:CDS |
| TTCTTATCAAGAACGGCGAA+AGG | 0.494765 | 8_3:+45374197 | Msa1290500:CDS |
| AACGGCGAAAGGGTGTTCCT+TGG | 0.495446 | 8_3:+45374208 | Msa1290500:CDS |
| GCCAGGGGTACCAATGAACC+TGG | 0.500745 | 8_3:+45376879 | Msa1290500:CDS |
| CATCGATCCACAGCGTCCTC+GGG | 0.504680 | 8_3:-45373982 | None:intergenic |
| AGCTGTGAAAAGGGGAGCTA+AGG | 0.515551 | 8_3:+45374167 | Msa1290500:CDS |
| AAAGGTAACATCATGTATGC+TGG | 0.520807 | 8_3:-45376584 | None:intergenic |
| AAAATCGCGGCTGATGTACC+CGG | 0.524444 | 8_3:+45374009 | Msa1290500:CDS |
| CAAAGCATTTGAAAATGCAT+TGG | 0.524922 | 8_3:+45373951 | Msa1290500:CDS |
| TGAAAGAGAAGAAAGAAAGA+AGG | 0.525485 | 8_3:+45376557 | Msa1290500:CDS |
| ATTCCAGCAGGTGGGGCTGG+AGG | 0.527139 | 8_3:-45376730 | None:intergenic |
| AGCGTGTATTCCAGCAGGTG+GGG | 0.532991 | 8_3:-45376737 | None:intergenic |
| GCATGGCTTGCTACTTGTGT+AGG | 0.536057 | 8_3:-45376505 | None:intergenic |
| AAGACCATAATCCATGTCTC+CGG | 0.538089 | 8_3:-45376833 | None:intergenic |
| CAGCGTGTATTCCAGCAGGT+GGG | 0.540781 | 8_3:-45376738 | None:intergenic |
| CTATGTTCATCTTCCGTCCA+AGG | 0.545058 | 8_3:-45374225 | None:intergenic |
| GTTTCTGAGACAGTTATGCC+AGG | 0.548613 | 8_3:+45376862 | Msa1290500:CDS |
| GGTCAAGCAAGCAATTCTGC+TGG | 0.550077 | 8_3:+45376649 | Msa1290500:CDS |
| GCAGCGTGTATTCCAGCAGG+TGG | 0.551793 | 8_3:-45376739 | None:intergenic |
| AAGAGTTCAACAAAGCGTAC+TGG | 0.557383 | 8_3:+45374135 | Msa1290500:CDS |
| AAGGCCTGGAGAACCATGGA+TGG | 0.559427 | 8_3:+45376437 | Msa1290500:CDS |
| AGACCATAATCCATGTCTCC+GGG | 0.563041 | 8_3:-45376832 | None:intergenic |
| TCAACAAAGCGTACTGGTGA+AGG | 0.564550 | 8_3:+45374141 | Msa1290500:CDS |
| ATACACGCTGCTCCTAGGAT+CGG | 0.568201 | 8_3:+45376751 | Msa1290500:CDS |
| CGAGGACGCTGTGGATCGAT+GGG | 0.568594 | 8_3:+45373984 | Msa1290500:CDS |
| CTTGGACGGAAGATGAACAT+AGG | 0.569094 | 8_3:+45374226 | Msa1290500:CDS |
| GGAGCAGCGTGTATTCCAGC+AGG | 0.573176 | 8_3:-45376742 | None:intergenic |
| TTCGCCAGTCACCCCATCCA+TGG | 0.577904 | 8_3:-45376450 | None:intergenic |
| ATTCCAGCAGGTGGGACTGG+AGG | 0.578008 | 8_3:-45376691 | None:intergenic |
| GCGAAAGGGTGTTCCTTGGA+CGG | 0.581376 | 8_3:+45374212 | Msa1290500:CDS |
| AGGCCTGGAGAACCATGGAT+GGG | 0.582995 | 8_3:+45376438 | Msa1290500:CDS |
| TCTTATCAAGAACGGCGAAA+GGG | 0.585934 | 8_3:+45374198 | Msa1290500:CDS |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_3:-45374108 | None:intergenic |
| CTTCGAGTTCTTATCAAGAA+CGG | 0.593298 | 8_3:+45374190 | Msa1290500:CDS |
| TTTCTGAGACAGTTATGCCA+GGG | 0.595865 | 8_3:+45376863 | Msa1290500:CDS |
| AGAGATTAAGCGTCACTATG+TGG | 0.598823 | 8_3:+45374044 | Msa1290500:CDS |
| CTTCAAGGCCTGGAGAACCA+TGG | 0.600275 | 8_3:+45376433 | Msa1290500:CDS |
| GTGACTGGCGAAGTATATCA+AGG | 0.602104 | 8_3:+45376461 | Msa1290500:CDS |
| GAACCAGTTGTATCTACAGT+TGG | 0.605321 | 8_3:+45376787 | Msa1290500:CDS |
| GGCCTGGAGAACCATGGATG+GGG | 0.620882 | 8_3:+45376439 | Msa1290500:CDS |
| AAATCGCGGCTGATGTACCC+GGG | 0.624584 | 8_3:+45374010 | Msa1290500:CDS |
| TGGCATATGTCGTAGGACCC+AGG | 0.624839 | 8_3:-45376897 | None:intergenic |
| AAATGGGTAGCAGCTGTGAG+TGG | 0.631015 | 8_3:+45373914 | Msa1290500:CDS |
| GGAGACATTTCAGCACCTCA+AGG | 0.642144 | 8_3:+45376616 | Msa1290500:CDS |
| ACAAAGCGTACTGGTGAAGG+AGG | 0.643312 | 8_3:+45374144 | Msa1290500:CDS |
| GAAGGAGGAGCTGTGAAAAG+GGG | 0.644294 | 8_3:+45374159 | Msa1290500:CDS |
| TTCTGAGACAGTTATGCCAG+GGG | 0.654155 | 8_3:+45376864 | Msa1290500:CDS |
| TGTTGCATGGCATATGTCGT+AGG | 0.673191 | 8_3:-45376904 | None:intergenic |
| GAATTATCCCGAGGACGCTG+TGG | 0.679154 | 8_3:+45373975 | Msa1290500:CDS |
| CCAGGGGTACCAATGAACCT+GGG | 0.686028 | 8_3:+45376880 | Msa1290500:CDS |
| TGCATTGGCGAATTATCCCG+AGG | 0.693717 | 8_3:+45373966 | Msa1290500:CDS |
| TTGAGCATATGTATGTTGCA+TGG | 0.694059 | 8_3:-45376917 | None:intergenic |
| TGACCGGTAATTGGTCCTTG+AGG | 0.703451 | 8_3:-45376631 | None:intergenic |
| GGATCGATGGGAGAAAATCG+CGG | 0.708384 | 8_3:+45373996 | Msa1290500:CDS |
| AAGTATATCAAGGTACAGTG+TGG | 0.727880 | 8_3:+45376471 | Msa1290500:CDS |
| GCACAAAACCAGATTCAATG+TGG | 0.730016 | 8_3:-45374086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTAAATAAAATAA+AGG | - | chr8_3:45374551-45374570 | None:intergenic | 0.0% |
| !! | ACTAAAATCATATTTAAATA+CGG | - | chr8_3:45374261-45374280 | None:intergenic | 10.0% |
| !!! | ATCTTGTAAATTTTTTTTAT+TGG | + | chr8_3:45374311-45374330 | Msa1290500:intron | 10.0% |
| !!! | TTAATAATTATAGTGTTTTT+TGG | - | chr8_3:45374503-45374522 | None:intergenic | 10.0% |
| !! | AATCTAAACAAAAAAACTTA+GGG | + | chr8_3:45374468-45374487 | Msa1290500:intron | 15.0% |
| !! | TATTTAAATATATACTCTTG+AGG | + | chr8_3:45374557-45374576 | Msa1290500:intron | 15.0% |
| !!! | TTCATTGATGTTTTAATTTT+AGG | - | chr8_3:45375356-45375375 | None:intergenic | 15.0% |
| !!! | TATAAAAACTTTTCTAACAT+GGG | + | chr8_3:45376052-45376071 | Msa1290500:intron | 15.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_3:45374117-45374136 | None:intergenic | 20.0% |
| !! | GAATCTAAACAAAAAAACTT+AGG | + | chr8_3:45374467-45374486 | Msa1290500:intron | 20.0% |
| !! | ACACTATAATTATTAATTGC+AGG | + | chr8_3:45374507-45374526 | Msa1290500:intron | 20.0% |
| !! | CACTATAATTATTAATTGCA+GGG | + | chr8_3:45374508-45374527 | Msa1290500:intron | 20.0% |
| !! | GATATGAATGATTAAAATGA+TGG | + | chr8_3:45374708-45374727 | Msa1290500:intron | 20.0% |
| !! | GAATGAAGTAAATAAAACTA+TGG | + | chr8_3:45375052-45375071 | Msa1290500:intron | 20.0% |
| !! | ATAAAACTATGGATTTAATG+AGG | + | chr8_3:45375063-45375082 | Msa1290500:intron | 20.0% |
| !!! | GTAAGTTCTAATAAATACAT+TGG | - | chr8_3:45375198-45375217 | None:intergenic | 20.0% |
| !!! | TTTAGGATGTTTTTAATTCT+AGG | - | chr8_3:45375339-45375358 | None:intergenic | 20.0% |
| !! | AAAACATCAATGAAAATGTA+TGG | + | chr8_3:45375362-45375381 | Msa1290500:intron | 20.0% |
| !! | AAACATCAATGAAAATGTAT+GGG | + | chr8_3:45375363-45375382 | Msa1290500:intron | 20.0% |
| !! | CAAATACCAATATCATTTAA+TGG | + | chr8_3:45375773-45375792 | Msa1290500:intron | 20.0% |
| !!! | GTATAAAAACTTTTCTAACA+TGG | + | chr8_3:45376051-45376070 | Msa1290500:intron | 20.0% |
| !! | TTGGTAAATACTGATAAATA+AGG | + | chr8_3:45376094-45376113 | Msa1290500:intron | 20.0% |
| !! | TAAAACTAAAAAGATCTGAT+AGG | - | chr8_3:45376259-45376278 | None:intergenic | 20.0% |
| !!! | TATTTTCAAGTTTGTTGAAT+AGG | + | chr8_3:45376404-45376423 | Msa1290500:intron | 20.0% |
| !!! | CAACCATTTTTGAATTTACT+GGG | + | chr8_3:45374441-45374460 | Msa1290500:intron | 25.0% |
| !!! | TGTGCCTTAAAATTTTTCAA+CGG | + | chr8_3:45374920-45374939 | Msa1290500:intron | 25.0% |
| !! | AGATCCGTTGAAAAATTTTA+AGG | - | chr8_3:45374927-45374946 | None:intergenic | 25.0% |
| !! | TTTTACTAAACCATTGTATC+TGG | + | chr8_3:45374985-45375004 | Msa1290500:intron | 25.0% |
| !!! | TAGCATTTATCTAAGGTTTT+AGG | + | chr8_3:45375026-45375045 | Msa1290500:intron | 25.0% |
| ! | TGTAATAAATTCTTCTGATG+TGG | + | chr8_3:45375161-45375180 | Msa1290500:intron | 25.0% |
| ! | CTAGTAGGATTAAATAGTAT+TGG | + | chr8_3:45375244-45375263 | Msa1290500:intron | 25.0% |
| !!! | TAGGATTAAATAGTATTGGT+AGG | + | chr8_3:45375248-45375267 | Msa1290500:intron | 25.0% |
| ! | AACATCAATGAAAATGTATG+GGG | + | chr8_3:45375364-45375383 | Msa1290500:intron | 25.0% |
| !! | AACTTCCTTAATGATTTTAG+TGG | + | chr8_3:45375438-45375457 | Msa1290500:intron | 25.0% |
| ! | ACAAACCACTAAAATCATTA+AGG | - | chr8_3:45375446-45375465 | None:intergenic | 25.0% |
| ! | TAGGATATTGTGTTAGTATT+AGG | - | chr8_3:45375473-45375492 | None:intergenic | 25.0% |
| ! | AGACTTTGATACATTGATAT+AGG | + | chr8_3:45375551-45375570 | Msa1290500:intron | 25.0% |
| !! | TTAGTAACTTTTCCAAAGAT+TGG | - | chr8_3:45375652-45375671 | None:intergenic | 25.0% |
| !! | TTGACTAAATTTAGAGTTAC+TGG | + | chr8_3:45375933-45375952 | Msa1290500:intron | 25.0% |
| ! | AAAGTTTGAATTAGGAAGTT+TGG | + | chr8_3:45376075-45376094 | Msa1290500:intron | 25.0% |
| ! | TGATAAATAAGGACTAGAAT+TGG | + | chr8_3:45376105-45376124 | Msa1290500:intron | 25.0% |
| ! | GATAAATAAGGACTAGAATT+GGG | + | chr8_3:45376106-45376125 | Msa1290500:intron | 25.0% |
| ! | TGTTACTGATAATCATCTAA+TGG | - | chr8_3:45376296-45376315 | None:intergenic | 25.0% |
| ! | AATTGCAGACATTAGTTATA+TGG | + | chr8_3:45376318-45376337 | Msa1290500:intron | 25.0% |
| ! | GATGTTACCTTTGTAAAAAA+TGG | + | chr8_3:45376595-45376614 | Msa1290500:CDS | 25.0% |
| !!! | AATGTCTCCATTTTTTACAA+AGG | - | chr8_3:45376605-45376624 | None:intergenic | 25.0% |
| ! | CAAAGCATTTGAAAATGCAT+TGG | + | chr8_3:45373951-45373970 | Msa1290500:CDS | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_3:45374031-45374050 | None:intergenic | 30.0% |
| AAAAAAACGCTATAGTTGCA+AGG | - | chr8_3:45374284-45374303 | None:intergenic | 30.0% | |
| ! | TCACGTGATGTGATTTTATT+GGG | + | chr8_3:45374392-45374411 | Msa1290500:intron | 30.0% |
| !! | GCAACCATTTTTGAATTTAC+TGG | + | chr8_3:45374440-45374459 | Msa1290500:intron | 30.0% |
| ! | CATTTTTGAATTTACTGGGA+CGG | + | chr8_3:45374445-45374464 | Msa1290500:intron | 30.0% |
| CTAAACAAAAAAACTTAGGG+AGG | + | chr8_3:45374471-45374490 | Msa1290500:intron | 30.0% | |
| !!! | GTTTTGAAGCTTATATGTGT+CGG | + | chr8_3:45374579-45374598 | Msa1290500:intron | 30.0% |
| ATATCAGTATCGTCAAATAG+CGG | - | chr8_3:45374878-45374897 | None:intergenic | 30.0% | |
| ATAAATACATTGGATCACAG+AGG | - | chr8_3:45375188-45375207 | None:intergenic | 30.0% | |
| ACTTACTACACTTCTAATGA+CGG | + | chr8_3:45375212-45375231 | Msa1290500:intron | 30.0% | |
| !! | AATAGTATTGGTAGGTCATT+TGG | + | chr8_3:45375256-45375275 | Msa1290500:intron | 30.0% |
| AATGTATCAAAGTCTAAACG+AGG | - | chr8_3:45375546-45375565 | None:intergenic | 30.0% | |
| ! | TGTTTTGCTGGATTTTGTTA+TGG | + | chr8_3:45375619-45375638 | Msa1290500:intron | 30.0% |
| !! | GTTTTGCTGGATTTTGTTAT+GGG | + | chr8_3:45375620-45375639 | Msa1290500:intron | 30.0% |
| ATATCAGATCTGTGAAACAA+TGG | + | chr8_3:45375671-45375690 | Msa1290500:intron | 30.0% | |
| ATCTGTGAAACAATGGTATT+AGG | + | chr8_3:45375678-45375697 | Msa1290500:intron | 30.0% | |
| AATGTAGAACAATGTATTGC+TGG | + | chr8_3:45375718-45375737 | Msa1290500:intron | 30.0% | |
| CATTTGATCATCTTTGTAGA+TGG | + | chr8_3:45375978-45375997 | Msa1290500:intron | 30.0% | |
| AACATGGGAAAGTTTGAATT+AGG | + | chr8_3:45376067-45376086 | Msa1290500:intron | 30.0% | |
| !!! | AAACCCAGAAGTTTTTTACT+AGG | + | chr8_3:45376146-45376165 | Msa1290500:intron | 30.0% |
| CAACCTAGTAAAAAACTTCT+GGG | - | chr8_3:45376152-45376171 | None:intergenic | 30.0% | |
| TACTATTAGTTACTTGTCAG+AGG | - | chr8_3:45376236-45376255 | None:intergenic | 30.0% | |
| !! | TTGAATAGGCTATTTCTTCA+AGG | + | chr8_3:45376418-45376437 | Msa1290500:intron | 30.0% |
| !! | GATTTTTGTATTTCTGAGCA+TGG | - | chr8_3:45376525-45376544 | None:intergenic | 30.0% |
| TCAGAAATACAAAAATCGTC+AGG | + | chr8_3:45376528-45376547 | Msa1290500:CDS | 30.0% | |
| TGAAAGAGAAGAAAGAAAGA+AGG | + | chr8_3:45376557-45376576 | Msa1290500:CDS | 30.0% | |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_3:45374030-45374049 | None:intergenic | 35.0% |
| GATATCAACCACATTGAATC+TGG | + | chr8_3:45374078-45374097 | Msa1290500:CDS | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_3:45374111-45374130 | None:intergenic | 35.0% | |
| ! | CTTCGAGTTCTTATCAAGAA+CGG | + | chr8_3:45374190-45374209 | Msa1290500:CDS | 35.0% |
| AAGCTAACATCAGGAACTAA+AGG | - | chr8_3:45374366-45374385 | None:intergenic | 35.0% | |
| ! | AGTTCCTGATGTTAGCTTAT+TGG | + | chr8_3:45374368-45374387 | Msa1290500:intron | 35.0% |
| ! | GTTCCTGATGTTAGCTTATT+GGG | + | chr8_3:45374369-45374388 | Msa1290500:intron | 35.0% |
| ! | GTCACGTGATGTGATTTTAT+TGG | + | chr8_3:45374391-45374410 | Msa1290500:intron | 35.0% |
| CGTCCCAGTAAATTCAAAAA+TGG | - | chr8_3:45374447-45374466 | None:intergenic | 35.0% | |
| ATTGCGAAAAATAGCCATGA+CGG | + | chr8_3:45374616-45374635 | Msa1290500:intron | 35.0% | |
| ! | CCTTTACTGATTGGATATGA+CGG | - | chr8_3:45374667-45374686 | None:intergenic | 35.0% |
| CGTCATATCCAATCAGTAAA+GGG | + | chr8_3:45374665-45374684 | Msa1290500:intron | 35.0% | |
| !!! | AAGGGCATCATAGTGTTTTA+TGG | + | chr8_3:45374683-45374702 | Msa1290500:intron | 35.0% |
| ! | TTGTAGCCAGTGTTATTGAT+GGG | - | chr8_3:45374748-45374767 | None:intergenic | 35.0% |
| ! | ATTGTAGCCAGTGTTATTGA+TGG | - | chr8_3:45374749-45374768 | None:intergenic | 35.0% |
| GTGCTACACTATTAAGTACA+AGG | - | chr8_3:45374795-45374814 | None:intergenic | 35.0% | |
| AAACAGTCACAGTAGTTAAC+TGG | - | chr8_3:45374968-45374987 | None:intergenic | 35.0% | |
| TAAAGGAGAACCAGATACAA+TGG | - | chr8_3:45374998-45375017 | None:intergenic | 35.0% | |
| ! | TAAATGCTACGTACTGGTAA+AGG | - | chr8_3:45375015-45375034 | None:intergenic | 35.0% |
| CTTAGATAAATGCTACGTAC+TGG | - | chr8_3:45375021-45375040 | None:intergenic | 35.0% | |
| CAGTACGTAGCATTTATCTA+AGG | + | chr8_3:45375019-45375038 | Msa1290500:intron | 35.0% | |
| TTCCATCATCCATGTTAGAA+GGG | + | chr8_3:45375115-45375134 | Msa1290500:intron | 35.0% | |
| AATCACAATCCCTTCTAACA+TGG | - | chr8_3:45375127-45375146 | None:intergenic | 35.0% | |
| TAATTCAAATGCATGCCTCA+CGG | - | chr8_3:45375308-45375327 | None:intergenic | 35.0% | |
| AGAACATCTAACATCGTTCT+AGG | - | chr8_3:45375492-45375511 | None:intergenic | 35.0% | |
| TATGGGTTTACTCCAATCTT+TGG | + | chr8_3:45375637-45375656 | Msa1290500:intron | 35.0% | |
| ACCAATATCATTTAATGGCG+TGG | + | chr8_3:45375778-45375797 | Msa1290500:intron | 35.0% | |
| AATATCATTTAATGGCGTGG+CGG | + | chr8_3:45375781-45375800 | Msa1290500:intron | 35.0% | |
| ATCCTTGCACAAATTGTCTA+TGG | - | chr8_3:45375822-45375841 | None:intergenic | 35.0% | |
| ACTAAGATCCAGCAAAAAGA+TGG | - | chr8_3:45376033-45376052 | None:intergenic | 35.0% | |
| CCAACCTAGTAAAAAACTTC+TGG | - | chr8_3:45376153-45376172 | None:intergenic | 35.0% | |
| !!! | CCAGAAGTTTTTTACTAGGT+TGG | + | chr8_3:45376150-45376169 | Msa1290500:intron | 35.0% |
| !! | TTTTTACTAGGTTGGAAGCT+CGG | + | chr8_3:45376158-45376177 | Msa1290500:intron | 35.0% |
| TAGTTACTTGTCAGAGGTAA+TGG | - | chr8_3:45376230-45376249 | None:intergenic | 35.0% | |
| AAGTATATCAAGGTACAGTG+TGG | + | chr8_3:45376471-45376490 | Msa1290500:CDS | 35.0% | |
| AAAGGTAACATCATGTATGC+TGG | - | chr8_3:45376587-45376606 | None:intergenic | 35.0% | |
| TTGAGCATATGTATGTTGCA+TGG | - | chr8_3:45376920-45376939 | None:intergenic | 35.0% | |
| AGAGATTAAGCGTCACTATG+TGG | + | chr8_3:45374044-45374063 | Msa1290500:CDS | 40.0% | |
| GCACAAAACCAGATTCAATG+TGG | - | chr8_3:45374089-45374108 | None:intergenic | 40.0% | |
| AAGAGTTCAACAAAGCGTAC+TGG | + | chr8_3:45374135-45374154 | Msa1290500:CDS | 40.0% | |
| TTCTTATCAAGAACGGCGAA+AGG | + | chr8_3:45374197-45374216 | Msa1290500:CDS | 40.0% | |
| TCTTATCAAGAACGGCGAAA+GGG | + | chr8_3:45374198-45374217 | Msa1290500:CDS | 40.0% | |
| TGACCCAATAAGCTAACATC+AGG | - | chr8_3:45374375-45374394 | None:intergenic | 40.0% | |
| !! | ATGTGTCGGTGTTACAATTG+CGG | + | chr8_3:45374593-45374612 | Msa1290500:intron | 40.0% |
| !! | AAAATAGCCATGACGGATTG+CGG | + | chr8_3:45374623-45374642 | Msa1290500:intron | 40.0% |
| ! | GGATTGCGGTAACAGATTTT+TGG | + | chr8_3:45374637-45374656 | Msa1290500:intron | 40.0% |
| CCGTCATATCCAATCAGTAA+AGG | + | chr8_3:45374664-45374683 | Msa1290500:intron | 40.0% | |
| CTATGATGCCCTTTACTGAT+TGG | - | chr8_3:45374676-45374695 | None:intergenic | 40.0% | |
| ! | GGCATCATAGTGTTTTATGG+TGG | + | chr8_3:45374686-45374705 | Msa1290500:intron | 40.0% |
| ! | TGTAGCCAGTGTTATTGATG+GGG | - | chr8_3:45374747-45374766 | None:intergenic | 40.0% |
| GTTCCATCATCCATGTTAGA+AGG | + | chr8_3:45375114-45375133 | Msa1290500:intron | 40.0% | |
| ATCCCTTCTAACATGGATGA+TGG | - | chr8_3:45375120-45375139 | None:intergenic | 40.0% | |
| !! | AGTATTGGTAGGTCATTTGG+AGG | + | chr8_3:45375259-45375278 | Msa1290500:intron | 40.0% |
| GTGAGGCATGCATTTGAATT+AGG | + | chr8_3:45375307-45375326 | Msa1290500:intron | 40.0% | |
| AGTGTAACTCACTGCAACAT+TGG | - | chr8_3:45375595-45375614 | None:intergenic | 40.0% | |
| AATGTTGCAGTGAGTTACAC+TGG | + | chr8_3:45375594-45375613 | Msa1290500:intron | 40.0% | |
| !! | GTTACACTGGATTGTTTTGC+TGG | + | chr8_3:45375607-45375626 | Msa1290500:intron | 40.0% |
| GCCACGCCATTAAATGATAT+TGG | - | chr8_3:45375782-45375801 | None:intergenic | 40.0% | |
| CTTGCACAAATTGTCTATGG+TGG | - | chr8_3:45375819-45375838 | None:intergenic | 40.0% | |
| CACCATAGACAATTTGTGCA+AGG | + | chr8_3:45375817-45375836 | Msa1290500:intron | 40.0% | |
| !!! | GGCTGCAATGCTGTTTTTTA+CGG | + | chr8_3:45375863-45375882 | Msa1290500:intron | 40.0% |
| !!! | TGCAATGCTGTTTTTTACGG+CGG | + | chr8_3:45375866-45375885 | Msa1290500:intron | 40.0% |
| !!! | TCAAGAGTTTTGATTCCAGC+AGG | - | chr8_3:45376706-45376725 | None:intergenic | 40.0% |
| ! | GATACAACTGGTTCTCCTAT+AGG | - | chr8_3:45376781-45376800 | None:intergenic | 40.0% |
| GAACCAGTTGTATCTACAGT+TGG | + | chr8_3:45376787-45376806 | Msa1290500:CDS | 40.0% | |
| GTACCAACTGTAGATACAAC+TGG | - | chr8_3:45376793-45376812 | None:intergenic | 40.0% | |
| ! | CCAGTTAATTTTACTGCTCC+CGG | + | chr8_3:45376814-45376833 | Msa1290500:CDS | 40.0% |
| AAGACCATAATCCATGTCTC+CGG | - | chr8_3:45376836-45376855 | None:intergenic | 40.0% | |
| !! | TTTCTGAGACAGTTATGCCA+GGG | + | chr8_3:45376863-45376882 | Msa1290500:CDS | 40.0% |
| ! | TCAACAAAGCGTACTGGTGA+AGG | + | chr8_3:45374141-45374160 | Msa1290500:CDS | 45.0% |
| TGAAGGAGGAGCTGTGAAAA+GGG | + | chr8_3:45374158-45374177 | Msa1290500:CDS | 45.0% | |
| CTATGTTCATCTTCCGTCCA+AGG | - | chr8_3:45374228-45374247 | None:intergenic | 45.0% | |
| CTTGGACGGAAGATGAACAT+AGG | + | chr8_3:45374226-45374245 | Msa1290500:CDS | 45.0% | |
| CTTTCCCCCATCAATAACAC+TGG | + | chr8_3:45374739-45374758 | Msa1290500:intron | 45.0% | |
| ! | GTAGCCAGTGTTATTGATGG+GGG | - | chr8_3:45374746-45374765 | None:intergenic | 45.0% |
| AGGCACAGCTAACATAGCTT+AGG | - | chr8_3:45374907-45374926 | None:intergenic | 45.0% | |
| ! | TGACGGTTGACTCAACTAGT+AGG | + | chr8_3:45375229-45375248 | Msa1290500:intron | 45.0% |
| TAAGTGTTCACTGAACCGTG+AGG | + | chr8_3:45375290-45375309 | Msa1290500:intron | 45.0% | |
| GTAACTCACTGCAACATTGG+AGG | - | chr8_3:45375592-45375611 | None:intergenic | 45.0% | |
| ! | TTGTGCAAGGATGCTTGCTA+TGG | + | chr8_3:45375830-45375849 | Msa1290500:intron | 45.0% |
| !! | TGTGCAAGGATGCTTGCTAT+GGG | + | chr8_3:45375831-45375850 | Msa1290500:intron | 45.0% |
| ! | ACGAGTCTCCATCTTTTTGC+TGG | + | chr8_3:45376022-45376041 | Msa1290500:intron | 45.0% |
| !! | TAGGCTATTTCTTCAAGGCC+TGG | + | chr8_3:45376423-45376442 | Msa1290500:intron | 45.0% |
| GTGACTGGCGAAGTATATCA+AGG | + | chr8_3:45376461-45376480 | Msa1290500:CDS | 45.0% | |
| TTGCTTGCTTGACCGGTAAT+TGG | - | chr8_3:45376643-45376662 | None:intergenic | 45.0% | |
| AGCAGAATTGCTTGCTTGAC+CGG | - | chr8_3:45376650-45376669 | None:intergenic | 45.0% | |
| !!! | GAGTTTTGATTCCAGCAGGT+GGG | - | chr8_3:45376702-45376721 | None:intergenic | 45.0% |
| !!! | AGAGTTTTGATTCCAGCAGG+TGG | - | chr8_3:45376703-45376722 | None:intergenic | 45.0% |
| CCGGGAGCAGTAAAATTAAC+TGG | - | chr8_3:45376817-45376836 | None:intergenic | 45.0% | |
| AGACCATAATCCATGTCTCC+GGG | - | chr8_3:45376835-45376854 | None:intergenic | 45.0% | |
| ! | GGAGACATGGATTATGGTCT+TGG | + | chr8_3:45376835-45376854 | Msa1290500:CDS | 45.0% |
| GGCATAACTGTCTCAGAAAC+TGG | - | chr8_3:45376862-45376881 | None:intergenic | 45.0% | |
| !! | GTTTCTGAGACAGTTATGCC+AGG | + | chr8_3:45376862-45376881 | Msa1290500:CDS | 45.0% |
| !! | TTCTGAGACAGTTATGCCAG+GGG | + | chr8_3:45376864-45376883 | Msa1290500:CDS | 45.0% |
| TGTTGCATGGCATATGTCGT+AGG | - | chr8_3:45376907-45376926 | None:intergenic | 45.0% | |
| AAATGGGTAGCAGCTGTGAG+TGG | + | chr8_3:45373914-45373933 | Msa1290500:CDS | 50.0% | |
| ! | TGCATTGGCGAATTATCCCG+AGG | + | chr8_3:45373966-45373985 | Msa1290500:CDS | 50.0% |
| GGATCGATGGGAGAAAATCG+CGG | + | chr8_3:45373996-45374015 | Msa1290500:CDS | 50.0% | |
| AAAATCGCGGCTGATGTACC+CGG | + | chr8_3:45374009-45374028 | Msa1290500:CDS | 50.0% | |
| ! | ACAAAGCGTACTGGTGAAGG+AGG | + | chr8_3:45374144-45374163 | Msa1290500:CDS | 50.0% |
| GTGAAGGAGGAGCTGTGAAA+AGG | + | chr8_3:45374157-45374176 | Msa1290500:CDS | 50.0% | |
| GAAGGAGGAGCTGTGAAAAG+GGG | + | chr8_3:45374159-45374178 | Msa1290500:CDS | 50.0% | |
| AGCTGTGAAAAGGGGAGCTA+AGG | + | chr8_3:45374167-45374186 | Msa1290500:CDS | 50.0% | |
| TCTGTTACCGCAATCCGTCA+TGG | - | chr8_3:45374633-45374652 | None:intergenic | 50.0% | |
| TCGTCAAATAGCGGCTGTAG+TGG | - | chr8_3:45374869-45374888 | None:intergenic | 50.0% | |
| !! | GTGCAAGGATGCTTGCTATG+GGG | + | chr8_3:45375832-45375851 | Msa1290500:intron | 50.0% |
| !! | TGCAAGGATGCTTGCTATGG+GGG | + | chr8_3:45375833-45375852 | Msa1290500:intron | 50.0% |
| CAGTTTCGTCGACGTCAGAA+TGG | - | chr8_3:45375898-45375917 | None:intergenic | 50.0% | |
| TGACGTCGACGAAACTGATC+AGG | + | chr8_3:45375901-45375920 | Msa1290500:intron | 50.0% | |
| !! | GCATGGCTTGCTACTTGTGT+AGG | - | chr8_3:45376508-45376527 | None:intergenic | 50.0% |
| GGAGACATTTCAGCACCTCA+AGG | + | chr8_3:45376616-45376635 | Msa1290500:CDS | 50.0% | |
| GCACCTCAAGGACCAATTAC+CGG | + | chr8_3:45376628-45376647 | Msa1290500:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | - | chr8_3:45376634-45376653 | None:intergenic | 50.0% | |
| GGTCAAGCAAGCAATTCTGC+TGG | + | chr8_3:45376649-45376668 | Msa1290500:CDS | 50.0% | |
| ATACACGCTGCTCCTAGGAT+CGG | + | chr8_3:45376751-45376770 | Msa1290500:CDS | 50.0% | |
| ! | TTTTACTGCTCCCGGAGACA+TGG | + | chr8_3:45376822-45376841 | Msa1290500:CDS | 50.0% |
| GAATTATCCCGAGGACGCTG+TGG | + | chr8_3:45373975-45373994 | Msa1290500:CDS | 55.0% | |
| AAATCGCGGCTGATGTACCC+GGG | + | chr8_3:45374010-45374029 | Msa1290500:CDS | 55.0% | |
| !! | AACGGCGAAAGGGTGTTCCT+TGG | + | chr8_3:45374208-45374227 | Msa1290500:CDS | 55.0% |
| !! | GCGAAAGGGTGTTCCTTGGA+CGG | + | chr8_3:45374212-45374231 | Msa1290500:CDS | 55.0% |
| !! | GCTTGCTATGGGGGTGCTAT+TGG | + | chr8_3:45375842-45375861 | Msa1290500:intron | 55.0% |
| CTTCAAGGCCTGGAGAACCA+TGG | + | chr8_3:45376433-45376452 | Msa1290500:CDS | 55.0% | |
| AAGGCCTGGAGAACCATGGA+TGG | + | chr8_3:45376437-45376456 | Msa1290500:CDS | 55.0% | |
| AGGCCTGGAGAACCATGGAT+GGG | + | chr8_3:45376438-45376457 | Msa1290500:CDS | 55.0% | |
| AGAACCATGGATGGGGTGAC+TGG | + | chr8_3:45376446-45376465 | Msa1290500:CDS | 55.0% | |
| TTGATTCCAGCAGGTGGGAC+TGG | - | chr8_3:45376697-45376716 | None:intergenic | 55.0% | |
| AGCGTGTATTCCAGCAGGTG+GGG | - | chr8_3:45376740-45376759 | None:intergenic | 55.0% | |
| CAGCGTGTATTCCAGCAGGT+GGG | - | chr8_3:45376741-45376760 | None:intergenic | 55.0% | |
| CTGGAATACACGCTGCTCCT+AGG | + | chr8_3:45376746-45376765 | Msa1290500:CDS | 55.0% | |
| TACACGCTGCTCCTAGGATC+GGG | + | chr8_3:45376752-45376771 | Msa1290500:CDS | 55.0% | |
| CCTATAGGTTGCCCGATCCT+AGG | - | chr8_3:45376766-45376785 | None:intergenic | 55.0% | |
| CCTAGGATCGGGCAACCTAT+AGG | + | chr8_3:45376763-45376782 | Msa1290500:CDS | 55.0% | |
| ! | GCTCCCGGAGACATGGATTA+TGG | + | chr8_3:45376829-45376848 | Msa1290500:CDS | 55.0% |
| !! | CCAGGGGTACCAATGAACCT+GGG | + | chr8_3:45376880-45376899 | Msa1290500:CDS | 55.0% |
| GTCGTAGGACCCAGGTTCAT+TGG | - | chr8_3:45376892-45376911 | None:intergenic | 55.0% | |
| TGGCATATGTCGTAGGACCC+AGG | - | chr8_3:45376900-45376919 | None:intergenic | 55.0% | |
| CATCGATCCACAGCGTCCTC+GGG | - | chr8_3:45373985-45374004 | None:intergenic | 60.0% | |
| CCATCGATCCACAGCGTCCT+CGG | - | chr8_3:45373986-45374005 | None:intergenic | 60.0% | |
| CGAGGACGCTGTGGATCGAT+GGG | + | chr8_3:45373984-45374003 | Msa1290500:CDS | 60.0% | |
| GGCCTGGAGAACCATGGATG+GGG | + | chr8_3:45376439-45376458 | Msa1290500:CDS | 60.0% | |
| CACCCCATCCATGGTTCTCC+AGG | - | chr8_3:45376444-45376463 | None:intergenic | 60.0% | |
| TTCGCCAGTCACCCCATCCA+TGG | - | chr8_3:45376453-45376472 | None:intergenic | 60.0% | |
| ATTCCAGCAGGTGGGACTGG+AGG | - | chr8_3:45376694-45376713 | None:intergenic | 60.0% | |
| TGTATTCCAGCAGGTGGGGC+TGG | - | chr8_3:45376736-45376755 | None:intergenic | 60.0% | |
| GCAGCGTGTATTCCAGCAGG+TGG | - | chr8_3:45376742-45376761 | None:intergenic | 60.0% | |
| GGAGCAGCGTGTATTCCAGC+AGG | - | chr8_3:45376745-45376764 | None:intergenic | 60.0% | |
| !! | GCCAGGGGTACCAATGAACC+TGG | + | chr8_3:45376879-45376898 | Msa1290500:CDS | 60.0% |
| CCCAGGTTCATTGGTACCCC+TGG | - | chr8_3:45376883-45376902 | None:intergenic | 60.0% | |
| CCGAGGACGCTGTGGATCGA+TGG | + | chr8_3:45373983-45374002 | Msa1290500:CDS | 65.0% | |
| AATCCTCCAGCCCCACCTGC+TGG | + | chr8_3:45376727-45376746 | Msa1290500:CDS | 65.0% | |
| ATTCCAGCAGGTGGGGCTGG+AGG | - | chr8_3:45376733-45376752 | None:intergenic | 65.0% | |
| GCTCCTCCAGTCCCACCTGC+TGG | + | chr8_3:45376688-45376707 | Msa1290500:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 45373907 | 45376945 | 45373907 | ID=Msa1290500;Name=Msa1290500 |
| chr8_3 | mRNA | 45373907 | 45376945 | 45373907 | ID=Msa1290500-mRNA-1;Parent=Msa1290500;Name=Msa1290500-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|286 |
| chr8_3 | exon | 45373907 | 45374247 | 45373907 | ID=Msa1290500-mRNA-1:exon:12530;Parent=Msa1290500-mRNA-1 |
| chr8_3 | exon | 45376426 | 45376945 | 45376426 | ID=Msa1290500-mRNA-1:exon:12531;Parent=Msa1290500-mRNA-1 |
| chr8_3 | CDS | 45373907 | 45374247 | 45373907 | ID=Msa1290500-mRNA-1:cds;Parent=Msa1290500-mRNA-1 |
| chr8_3 | CDS | 45376426 | 45376945 | 45376426 | ID=Msa1290500-mRNA-1:cds;Parent=Msa1290500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
