Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200080 | sp|Q6AVI0|RSLE2_ORYSJ | 30.689 | 668 | 400 | 11 | 4 | 617 | 49 | 707 | 1.33e-105 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200080 | A0A2Z6PSL9 | 77.232 | 448 | 102 | 0 | 170 | 617 | 1 | 448 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036800 | Msa1200080 | 0.955085 | 6.814352e-113 | -8.615850e-47 |
| Msa0750650 | Msa1200080 | 0.819060 | 1.416071e-52 | -8.615850e-47 |
| Msa0887630 | Msa1200080 | 0.908320 | 1.943772e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200080 | MtrunA17_Chr5g0408131 | 76.543 | 243 | 56 | 1 | 396 | 637 | 1 | 243 | 1.37e-124 | 368 |
| Msa1200080 | MtrunA17_Chr8g0383081 | 37.173 | 573 | 340 | 7 | 74 | 637 | 14 | 575 | 1.43e-124 | 380 |
| Msa1200080 | MtrunA17_Chr4g0052681 | 37.407 | 540 | 318 | 6 | 85 | 612 | 27 | 558 | 4.62e-119 | 367 |
| Msa1200080 | MtrunA17_Chr8g0383211 | 35.737 | 638 | 369 | 15 | 14 | 625 | 27 | 649 | 1.57e-111 | 350 |
| Msa1200080 | MtrunA17_Chr8g0383041 | 36.347 | 531 | 320 | 6 | 91 | 612 | 34 | 555 | 3.43e-105 | 331 |
| Msa1200080 | MtrunA17_Chr2g0308821 | 31.618 | 544 | 351 | 5 | 81 | 612 | 124 | 658 | 1.36e-100 | 321 |
| Msa1200080 | MtrunA17_Chr7g0263231 | 31.014 | 661 | 382 | 12 | 16 | 619 | 433 | 1076 | 1.90e-98 | 325 |
| Msa1200080 | MtrunA17_Chr8g0354631 | 31.094 | 640 | 383 | 15 | 22 | 612 | 72 | 702 | 2.07e-98 | 317 |
| Msa1200080 | MtrunA17_Chr8g0359341 | 33.272 | 544 | 350 | 5 | 81 | 620 | 180 | 714 | 3.71e-96 | 311 |
| Msa1200080 | MtrunA17_Chr5g0402891 | 34.495 | 545 | 327 | 12 | 87 | 612 | 45 | 578 | 8.75e-96 | 307 |
| Msa1200080 | MtrunA17_Chr2g0333261 | 29.217 | 664 | 399 | 14 | 16 | 620 | 37 | 688 | 2.79e-92 | 300 |
| Msa1200080 | MtrunA17_Chr7g0263261 | 30.840 | 655 | 391 | 12 | 16 | 619 | 374 | 1017 | 3.39e-92 | 306 |
| Msa1200080 | MtrunA17_Chr4g0003151 | 27.846 | 650 | 412 | 7 | 12 | 612 | 18 | 659 | 1.28e-87 | 287 |
| Msa1200080 | MtrunA17_Chr8g0383071 | 42.759 | 290 | 155 | 5 | 144 | 430 | 27 | 308 | 3.46e-66 | 219 |
| Msa1200080 | MtrunA17_Chr4g0052601 | 35.075 | 402 | 221 | 11 | 16 | 388 | 29 | 419 | 1.06e-65 | 222 |
| Msa1200080 | MtrunA17_Chr4g0053391 | 41.406 | 256 | 137 | 5 | 362 | 614 | 1 | 246 | 1.23e-58 | 198 |
| Msa1200080 | MtrunA17_Chr8g0383051 | 38.956 | 249 | 149 | 2 | 91 | 338 | 46 | 292 | 4.86e-52 | 182 |
| Msa1200080 | MtrunA17_Chr4g0062411 | 24.367 | 632 | 416 | 16 | 11 | 612 | 50 | 649 | 3.38e-39 | 153 |
| Msa1200080 | MtrunA17_Chr4g0052611 | 42.714 | 199 | 103 | 5 | 418 | 612 | 12 | 203 | 7.38e-39 | 143 |
| Msa1200080 | MtrunA17_Chr8g0383181 | 31.724 | 290 | 175 | 9 | 16 | 284 | 19 | 306 | 5.73e-38 | 143 |
| Msa1200080 | MtrunA17_Chr8g0383061 | 36.318 | 201 | 118 | 2 | 418 | 612 | 1 | 197 | 2.85e-34 | 130 |
| Msa1200080 | MtrunA17_Chr1g0192041 | 37.500 | 184 | 106 | 3 | 314 | 495 | 60 | 236 | 2.40e-31 | 122 |
| Msa1200080 | MtrunA17_Chr8g0390371 | 53.846 | 78 | 36 | 0 | 537 | 614 | 2 | 79 | 1.45e-23 | 95.1 |
| Msa1200080 | MtrunA17_Chr8g0383091 | 38.621 | 145 | 79 | 3 | 418 | 555 | 1 | 142 | 5.21e-23 | 95.5 |
| Msa1200080 | MtrunA17_Chr3g0108001 | 53.521 | 71 | 33 | 0 | 544 | 614 | 5 | 75 | 5.46e-21 | 88.6 |
| Msa1200080 | MtrunA17_Chr8g0383171 | 34.659 | 176 | 104 | 4 | 445 | 614 | 63 | 233 | 2.53e-20 | 91.3 |
| Msa1200080 | MtrunA17_Chr1g0162951 | 64.000 | 50 | 18 | 0 | 565 | 614 | 1 | 50 | 5.15e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200080 | AT3G42170.1 | 30.516 | 639 | 378 | 10 | 16 | 612 | 60 | 674 | 2.17e-101 | 324 |
| Msa1200080 | AT3G42170.2 | 30.516 | 639 | 378 | 10 | 16 | 612 | 38 | 652 | 2.76e-101 | 323 |
| Msa1200080 | AT1G18560.1 | 22.581 | 651 | 441 | 17 | 4 | 621 | 35 | 655 | 5.80e-33 | 135 |
Find 137 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGATTTGCAAAGTTATT+TGG | 0.184869 | 8_1:-52379891 | Msa1200080:CDS |
| ACCTCATACCGGAGTTAATT+TGG | 0.197408 | 8_1:-52380884 | Msa1200080:CDS |
| TCAAGCGACTTCGCAGATTT+TGG | 0.228777 | 8_1:-52379953 | Msa1200080:CDS |
| CTAAGTCTTCATATTTCTTA+TGG | 0.231556 | 8_1:+52379852 | None:intergenic |
| AAATTTAACCTTCATTCTTT+TGG | 0.248075 | 8_1:+52380213 | None:intergenic |
| AATATAGCCCATCAACTATA+AGG | 0.258780 | 8_1:+52380731 | None:intergenic |
| AAACATTTCAAGCATCAAAA+TGG | 0.270977 | 8_1:+52378328 | None:intergenic |
| GAGAAGTATCTCGATGAAAA+TGG | 0.274133 | 8_1:-52381378 | Msa1200080:CDS |
| TATTTCTTATGGTCAAGTTT+TGG | 0.294624 | 8_1:+52379863 | None:intergenic |
| TCCTCACTTTGATAATTTAT+CGG | 0.298218 | 8_1:-52380434 | Msa1200080:CDS |
| AATAATGCTTCAACATTATC+AGG | 0.303416 | 8_1:+52379674 | None:intergenic |
| GATGTTAAACAAATCTTTCC+TGG | 0.303845 | 8_1:+52381018 | None:intergenic |
| TTGATAGTGCTATCGGTCTA+AGG | 0.315126 | 8_1:-52380486 | Msa1200080:CDS |
| ACTTAGATATCCTTGAATAT+TGG | 0.317299 | 8_1:-52379835 | Msa1200080:CDS |
| TCTGATGCAACAGTGGTAAT+TGG | 0.317328 | 8_1:+52379752 | None:intergenic |
| AAAACTTGAAATGTTATTTA+CGG | 0.321785 | 8_1:-52381047 | Msa1200080:CDS |
| AGGTTAAATTTGATAAATAC+TGG | 0.324743 | 8_1:-52380201 | Msa1200080:CDS |
| GGACCTTCCCTTATAGTTGA+TGG | 0.328939 | 8_1:-52380739 | Msa1200080:CDS |
| TCTTCACAAAGCTCTGTTAG+AGG | 0.329113 | 8_1:-52379992 | Msa1200080:CDS |
| AATCGTGCATGAAGGTATTA+AGG | 0.329425 | 8_1:-52380674 | Msa1200080:CDS |
| ATTAAATATTAACTTATGTT+GGG | 0.337351 | 8_1:-52378277 | Msa1200080:three_prime_UTR |
| TTTCTTACACCCTCATGTTA+AGG | 0.346975 | 8_1:-52381127 | Msa1200080:CDS |
| TACTAAGTCTGTTGAGAGAT+TGG | 0.358442 | 8_1:-52380852 | Msa1200080:CDS |
| TTGAAGAGACACCCATCATT+TGG | 0.365868 | 8_1:-52380760 | Msa1200080:CDS |
| ACTGAACATCTTTAAAGTTA+TGG | 0.365892 | 8_1:+52378402 | None:intergenic |
| CATTATTGTGCACTCATGAT+TGG | 0.366998 | 8_1:-52379658 | Msa1200080:CDS |
| GATAAATACAGATCAATATA+TGG | 0.370026 | 8_1:-52380980 | Msa1200080:CDS |
| GATTAAATATTAACTTATGT+TGG | 0.374324 | 8_1:-52378278 | Msa1200080:three_prime_UTR |
| CATTTGCTTTCCAATATTCA+AGG | 0.377489 | 8_1:+52379825 | None:intergenic |
| TGCACTCATGATTGGCTTTG+TGG | 0.382471 | 8_1:-52379650 | Msa1200080:CDS |
| ACTAAGTCTGTTGAGAGATT+GGG | 0.382513 | 8_1:-52380851 | Msa1200080:CDS |
| TTCTTACACCCTCATGTTAA+GGG | 0.383140 | 8_1:-52381126 | Msa1200080:CDS |
| ACTATCAAGCATCAAATAAC+TGG | 0.386923 | 8_1:+52380501 | None:intergenic |
| AGAATATCTCAAGTCCTCTA+AGG | 0.396230 | 8_1:-52380029 | Msa1200080:CDS |
| TGAACCACTTATCTCCTTAG+AGG | 0.397384 | 8_1:+52380015 | None:intergenic |
| TGTTATTTACGGTCAATTCC+AGG | 0.400629 | 8_1:-52381036 | Msa1200080:CDS |
| GCAGCTGGAATAAATCTTGA+TGG | 0.404136 | 8_1:-52378497 | Msa1200080:intron |
| TCCGTCAAGACATGCCTATT+CGG | 0.404416 | 8_1:-52380531 | Msa1200080:CDS |
| ACAAATTGTAACTTAAATCT+AGG | 0.407030 | 8_1:+52380136 | None:intergenic |
| CAACAGACTTAGTAACTTCT+CGG | 0.418812 | 8_1:+52380861 | None:intergenic |
| TCTGAACATCTTCAAAGTTA+TGG | 0.419251 | 8_1:+52378364 | None:intergenic |
| GATATCACAACTTTGTTCTC+GGG | 0.422383 | 8_1:-52380358 | Msa1200080:CDS |
| GACCTTCCCTTATAGTTGAT+GGG | 0.422938 | 8_1:-52380738 | Msa1200080:CDS |
| CAATTTGTTGAGTATTGCTA+TGG | 0.423448 | 8_1:-52380121 | Msa1200080:CDS |
| TGATATCACAACTTTGTTCT+CGG | 0.425432 | 8_1:-52380359 | Msa1200080:CDS |
| TAAGGCAGTAGGTGCTTCCT+TGG | 0.429066 | 8_1:-52380656 | Msa1200080:CDS |
| TTGATCTAGTGGTGGATAAG+AGG | 0.429575 | 8_1:+52381242 | None:intergenic |
| AGAGAATTGCTACAGATTCA+TGG | 0.430802 | 8_1:+52382490 | None:intergenic |
| TATTGCTATGGGAAGTTGTT+TGG | 0.432386 | 8_1:-52380109 | Msa1200080:CDS |
| CGTGCCATCATAGCTACTTC+AGG | 0.434074 | 8_1:+52379791 | None:intergenic |
| CAATTTAAGCATCTTGCCCT+TGG | 0.450065 | 8_1:+52381351 | None:intergenic |
| TGAAAGAATAACACTGTAAG+AGG | 0.455420 | 8_1:+52380177 | None:intergenic |
| TGTATAGGAAATATGTCAAA+TGG | 0.455993 | 8_1:-52381480 | Msa1200080:intron |
| GATTGGCTTTGTGGAACTCC+AGG | 0.461005 | 8_1:-52379641 | Msa1200080:intron |
| ACCGAATAGGCATGTCTTGA+CGG | 0.464850 | 8_1:+52380530 | None:intergenic |
| TAACTGGAATTCCACCGAAT+AGG | 0.476280 | 8_1:+52380517 | None:intergenic |
| ATATAGCCCATCAACTATAA+GGG | 0.478825 | 8_1:+52380732 | None:intergenic |
| AATCGGTGACGACTGAAGAA+TGG | 0.481403 | 8_1:+52382457 | None:intergenic |
| GGGAAGTTGTTTGGCAGCGA+TGG | 0.482165 | 8_1:-52380100 | Msa1200080:CDS |
| GCCAAATTAACTCCGGTATG+AGG | 0.484940 | 8_1:+52380883 | None:intergenic |
| TCATGTTCAACAAATGCAAA+AGG | 0.491745 | 8_1:+52381171 | None:intergenic |
| TGTTGAACATGACGGAATTG+AGG | 0.491872 | 8_1:-52381160 | Msa1200080:CDS |
| AAGTCGCTTGATGTAATTTG+TGG | 0.492040 | 8_1:+52379965 | None:intergenic |
| CTTTGATAATTTATCGGACG+AGG | 0.492397 | 8_1:-52380428 | Msa1200080:CDS |
| ATAAGGGAAGGTCCAAATGA+TGG | 0.495352 | 8_1:+52380748 | None:intergenic |
| ATCGGTGACGACTGAAGAAT+GGG | 0.495574 | 8_1:+52382458 | None:intergenic |
| CACTTTCCACCACCTCATAC+CGG | 0.496648 | 8_1:-52380895 | Msa1200080:CDS |
| TTGATGCTTGATAGTGCTAT+CGG | 0.497524 | 8_1:-52380493 | Msa1200080:CDS |
| CACTAGATCAAGAAAAGTAC+AGG | 0.497708 | 8_1:-52381230 | Msa1200080:CDS |
| GTGTGTGTGAAGTATATAAG+AGG | 0.503464 | 8_1:-52380622 | Msa1200080:CDS |
| AAAGCTGTATAGAAAAGAAA+AGG | 0.503976 | 8_1:-52381070 | Msa1200080:CDS |
| TCCACACACCACTAAAATAG+AGG | 0.508049 | 8_1:+52380314 | None:intergenic |
| TCAGAGTCATCGTTCAGTAT+AGG | 0.511150 | 8_1:-52379734 | Msa1200080:CDS |
| ATATCCTGAAGTAGCTATGA+TGG | 0.513630 | 8_1:-52379795 | Msa1200080:CDS |
| TTAAATATTAACTTATGTTG+GGG | 0.514869 | 8_1:-52378276 | Msa1200080:three_prime_UTR |
| GAGGTTGGCGGTTGGATAAG+TGG | 0.515344 | 8_1:+52380333 | None:intergenic |
| AGTCGCTTGATGTAATTTGT+GGG | 0.523372 | 8_1:+52379966 | None:intergenic |
| CAAAATCAGAAAATTCGAAT+CGG | 0.525041 | 8_1:+52382415 | None:intergenic |
| ATCGGACGAGGAGTGGATTG+AGG | 0.527724 | 8_1:-52380416 | Msa1200080:CDS |
| GGAAGCATTTACCCTCCTAC+AGG | 0.531501 | 8_1:-52380464 | Msa1200080:CDS |
| TTGAATTTAATCGTGCATGA+AGG | 0.532005 | 8_1:-52380682 | Msa1200080:CDS |
| AAAGTTGTGATATCATAAAA+CGG | 0.532565 | 8_1:+52380367 | None:intergenic |
| TGTTGAAATGTGTCGAAGGA+GGG | 0.534694 | 8_1:-52381272 | Msa1200080:CDS |
| GAATATTGGAAAGCAAATGA+AGG | 0.535758 | 8_1:-52379821 | Msa1200080:CDS |
| TTAACTCCGGTATGAGGTGG+TGG | 0.539866 | 8_1:+52380889 | None:intergenic |
| GAGAATTCAGATGAAAATCA+AGG | 0.542293 | 8_1:-52380293 | Msa1200080:CDS |
| ATAATTTATCGGACGAGGAG+TGG | 0.544212 | 8_1:-52380423 | Msa1200080:CDS |
| CTAAGTCTGTTGAGAGATTG+GGG | 0.547500 | 8_1:-52380850 | Msa1200080:CDS |
| CTAAAATAGAGGTTGGCGGT+TGG | 0.556005 | 8_1:+52380325 | None:intergenic |
| TTGTTGAAATGTGTCGAAGG+AGG | 0.556585 | 8_1:-52381273 | Msa1200080:CDS |
| TCTTCAATCTATAGAAGAGA+AGG | 0.559572 | 8_1:+52378448 | None:intergenic |
| GAGGATCAATATCCTGTAGG+AGG | 0.560275 | 8_1:+52380452 | None:intergenic |
| ATAGGAAATATGTCAAATGG+AGG | 0.561206 | 8_1:-52381477 | Msa1200080:intron |
| GTACAGGGAGAAGATAGCTC+AGG | 0.562417 | 8_1:-52381214 | Msa1200080:CDS |
| TAAGGGAAGGTCCAAATGAT+GGG | 0.562550 | 8_1:+52380749 | None:intergenic |
| TAGGAAATATGTCAAATGGA+GGG | 0.563980 | 8_1:-52381476 | Msa1200080:exon |
| TTGCATGGCCAAAAGAATGA+AGG | 0.567331 | 8_1:-52380221 | Msa1200080:CDS |
| TCTTACACCCTCATGTTAAG+GGG | 0.574472 | 8_1:-52381125 | Msa1200080:CDS |
| CAATTCAAAACAATAATACA+AGG | 0.575531 | 8_1:+52378238 | None:intergenic |
| CTAGAAATCCCCTTAACATG+AGG | 0.576333 | 8_1:+52381117 | None:intergenic |
| ATGACTGACGAGTGAAGAAT+CGG | 0.577218 | 8_1:+52382440 | None:intergenic |
| TGATAGTGCTATCGGTCTAA+GGG | 0.578435 | 8_1:-52380485 | Msa1200080:CDS |
| AATATTGGAAAGCAAATGAA+GGG | 0.581923 | 8_1:-52379820 | Msa1200080:CDS |
| CTATAGAAGAGAAGGCTGAA+AGG | 0.585133 | 8_1:+52378456 | None:intergenic |
| CATGAAGGTATTAAGGCAGT+AGG | 0.586618 | 8_1:-52380667 | Msa1200080:CDS |
| GTTGAAATGTGTCGAAGGAG+GGG | 0.586766 | 8_1:-52381271 | Msa1200080:CDS |
| CACACCACTAAAATAGAGGT+TGG | 0.588765 | 8_1:+52380318 | None:intergenic |
| CGATGAAAATGGACAACCAA+GGG | 0.591453 | 8_1:-52381367 | Msa1200080:CDS |
| TTTGCATTTGTTGAACATGA+CGG | 0.591766 | 8_1:-52381168 | Msa1200080:CDS |
| TAGAAATCCCCTTAACATGA+GGG | 0.592320 | 8_1:+52381118 | None:intergenic |
| AAGTCCTCTAAGGAGATAAG+TGG | 0.598076 | 8_1:-52380019 | Msa1200080:CDS |
| GAGTCATCGTTCAGTATAGG+TGG | 0.599118 | 8_1:-52379731 | Msa1200080:CDS |
| TGCATCTAACAATGATGCAA+TGG | 0.600721 | 8_1:-52380791 | Msa1200080:CDS |
| TCCGATAAATTATCAAAGTG+AGG | 0.601110 | 8_1:+52380433 | None:intergenic |
| AGGAAATATGTCAAATGGAG+GGG | 0.603196 | 8_1:-52381475 | Msa1200080:exon |
| AGCCCATCAACTATAAGGGA+AGG | 0.603377 | 8_1:+52380736 | None:intergenic |
| TGATGGTCGTGAATTTGTTG+AGG | 0.603936 | 8_1:-52378480 | Msa1200080:CDS |
| TCAAGATCAAGTATGTTGCA+TGG | 0.606681 | 8_1:-52380236 | Msa1200080:CDS |
| TTTGTTTAACATCTGACTTG+TGG | 0.607895 | 8_1:-52381008 | Msa1200080:CDS |
| AGTGAGGATCAATATCCTGT+AGG | 0.613873 | 8_1:+52380449 | None:intergenic |
| AGATGCATTATCTAGAGTAA+TGG | 0.615581 | 8_1:+52380807 | None:intergenic |
| ACCACTAAAATAGAGGTTGG+CGG | 0.616373 | 8_1:+52380321 | None:intergenic |
| ATTCGAAATCTAGAGAATGC+CGG | 0.617228 | 8_1:+52382517 | None:intergenic |
| GTCAAGACATGCCTATTCGG+TGG | 0.621491 | 8_1:-52380528 | Msa1200080:CDS |
| AGGTGGTGGAAAGTGAAAGA+AGG | 0.624244 | 8_1:+52380903 | None:intergenic |
| ACACACTCTGATCTTATCCA+AGG | 0.627975 | 8_1:+52380639 | None:intergenic |
| CATTTGTTGAAATGTGTCGA+AGG | 0.632206 | 8_1:-52381276 | Msa1200080:CDS |
| AATTTGTTGAGTATTGCTAT+GGG | 0.633359 | 8_1:-52380120 | Msa1200080:CDS |
| AAATTAACTCCGGTATGAGG+TGG | 0.635735 | 8_1:+52380886 | None:intergenic |
| AGGATCAATATCCTGTAGGA+GGG | 0.640224 | 8_1:+52380453 | None:intergenic |
| CTTCTCGGCCAAATTAACTC+CGG | 0.643512 | 8_1:+52380876 | None:intergenic |
| GAAGTATATAAGAGGCTCAG+AGG | 0.671452 | 8_1:-52380614 | Msa1200080:CDS |
| CGATGACTCTGATGCAACAG+TGG | 0.679734 | 8_1:+52379745 | None:intergenic |
| GGTGACGACTGAAGAATGGG+TGG | 0.686345 | 8_1:+52382461 | None:intergenic |
| AAATTTCAAAGTAAACTGTG+TGG | 0.702647 | 8_1:-52379929 | Msa1200080:CDS |
| ACTAGATCAAGAAAAGTACA+GGG | 0.709367 | 8_1:-52381229 | Msa1200080:CDS |
| TCGATGAAAATGGACAACCA+AGG | 0.709707 | 8_1:-52381368 | Msa1200080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATTAACTTATGTT+GGG | - | chr8_1:52382395-52382414 | Msa1200080:intron | 10.0% |
| !!! | ATTTTAGTGTTTTTTGAAAT+GGG | - | chr8_1:52378290-52378309 | Msa1200080:three_prime_UTR | 15.0% |
| !!! | AGACTTTTAAAACATAAAAT+AGG | + | chr8_1:52378985-52379004 | None:intergenic | 15.0% |
| !!! | AAAACTTGAAATGTTATTTA+CGG | - | chr8_1:52379625-52379644 | Msa1200080:intron | 15.0% |
| !!! | TATAGGAGTATTATATTTAT+TGG | - | chr8_1:52381367-52381386 | Msa1200080:CDS | 15.0% |
| !!! | AATCATAATTTGTTTATCTT+TGG | - | chr8_1:52381529-52381548 | Msa1200080:intron | 15.0% |
| !!! | CAATTTTTATAAAAACAGTT+GGG | + | chr8_1:52381876-52381895 | None:intergenic | 15.0% |
| !!! | ACAATTTTTATAAAAACAGT+TGG | + | chr8_1:52381877-52381896 | None:intergenic | 15.0% |
| !!! | ACTGTTTTTATAAAAATTGT+CGG | - | chr8_1:52381877-52381896 | Msa1200080:intron | 15.0% |
| !! | GATTAAATATTAACTTATGT+TGG | - | chr8_1:52382394-52382413 | Msa1200080:intron | 15.0% |
| !! | TTAAATATTAACTTATGTTG+GGG | - | chr8_1:52382396-52382415 | Msa1200080:intron | 15.0% |
| !!! | GATTTTAGTGTTTTTTGAAA+TGG | - | chr8_1:52378289-52378308 | Msa1200080:three_prime_UTR | 20.0% |
| !!! | TTGATTTTGAAGTGAAATTT+GGG | - | chr8_1:52378535-52378554 | Msa1200080:intron | 20.0% |
| !! | GATAAATACAGATCAATATA+TGG | - | chr8_1:52379692-52379711 | Msa1200080:CDS | 20.0% |
| !! | AAAGTTGTGATATCATAAAA+CGG | + | chr8_1:52380308-52380327 | None:intergenic | 20.0% |
| !!! | AAATTTAACCTTCATTCTTT+TGG | + | chr8_1:52380462-52380481 | None:intergenic | 20.0% |
| !! | AGGTTAAATTTGATAAATAC+TGG | - | chr8_1:52380471-52380490 | Msa1200080:CDS | 20.0% |
| !! | ACAAATTGTAACTTAAATCT+AGG | + | chr8_1:52380539-52380558 | None:intergenic | 20.0% |
| !!! | CTGTTTTTATAAAAATTGTC+GGG | - | chr8_1:52381878-52381897 | Msa1200080:intron | 20.0% |
| !! | TCATGATTTAGAAAAAAGAA+GGG | + | chr8_1:52382001-52382020 | None:intergenic | 20.0% |
| !!! | TTATCTCTTTTCATTTAACA+TGG | - | chr8_1:52382098-52382117 | Msa1200080:intron | 20.0% |
| !! | CAATTCAAAACAATAATACA+AGG | + | chr8_1:52382437-52382456 | None:intergenic | 20.0% |
| ! | CAAAATCAGAAAATTCGAAT+CGG | + | chr8_1:52378260-52378279 | None:intergenic | 25.0% |
| !! | CGAATTTTCTGATTTTGTAA+AGG | - | chr8_1:52378263-52378282 | Msa1200080:three_prime_UTR | 25.0% |
| !! | ATTGTTGAGTTTTCTGAATT+GGG | - | chr8_1:52378362-52378381 | Msa1200080:three_prime_UTR | 25.0% |
| ! | TTACACTTGATTTATTCAGT+TGG | - | chr8_1:52378487-52378506 | Msa1200080:CDS | 25.0% |
| ! | TACACTTGATTTATTCAGTT+GGG | - | chr8_1:52378488-52378507 | Msa1200080:CDS | 25.0% |
| !!! | GTTGATTTTGAAGTGAAATT+TGG | - | chr8_1:52378534-52378553 | Msa1200080:intron | 25.0% |
| !! | ATTTTCTATGAACTTCAGAA+TGG | + | chr8_1:52378610-52378629 | None:intergenic | 25.0% |
| !!! | ATTCTGAAGTTCATAGAAAA+TGG | - | chr8_1:52378609-52378628 | Msa1200080:intron | 25.0% |
| !!! | AGTTAACTTGAGAATTTTGT+AGG | - | chr8_1:52378693-52378712 | Msa1200080:intron | 25.0% |
| !! | ATATGATTTTGTGCATGTAT+AGG | - | chr8_1:52379177-52379196 | Msa1200080:intron | 25.0% |
| ! | TGTATAGGAAATATGTCAAA+TGG | - | chr8_1:52379192-52379211 | Msa1200080:intron | 25.0% |
| !!! | GTTTTTGGTTTTTTTGAACT+TGG | + | chr8_1:52379252-52379271 | None:intergenic | 25.0% |
| ! | AAAGCTGTATAGAAAAGAAA+AGG | - | chr8_1:52379602-52379621 | Msa1200080:intron | 25.0% |
| !! | TATATTTTCATGTACGATGT+GGG | - | chr8_1:52379958-52379977 | Msa1200080:CDS | 25.0% |
| !! | TCCTCACTTTGATAATTTAT+CGG | - | chr8_1:52380238-52380257 | Msa1200080:CDS | 25.0% |
| !!! | AATTTGTTGAGTATTGCTAT+GGG | - | chr8_1:52380552-52380571 | Msa1200080:CDS | 25.0% |
| ! | AAATTTCAAAGTAAACTGTG+TGG | - | chr8_1:52380743-52380762 | Msa1200080:CDS | 25.0% |
| !! | TATTTCTTATGGTCAAGTTT+TGG | + | chr8_1:52380812-52380831 | None:intergenic | 25.0% |
| ! | CTAAGTCTTCATATTTCTTA+TGG | + | chr8_1:52380823-52380842 | None:intergenic | 25.0% |
| ! | ACTTAGATATCCTTGAATAT+TGG | - | chr8_1:52380837-52380856 | Msa1200080:CDS | 25.0% |
| ! | AATATTGGAAAGCAAATGAA+GGG | - | chr8_1:52380852-52380871 | Msa1200080:CDS | 25.0% |
| ! | AATAATGCTTCAACATTATC+AGG | + | chr8_1:52381001-52381020 | None:intergenic | 25.0% |
| ! | AAAAAGATACGAACTTTATC+AGG | + | chr8_1:52381072-52381091 | None:intergenic | 25.0% |
| ! | ATCTAAGTAGCAAATTAGAA+TGG | + | chr8_1:52381112-52381131 | None:intergenic | 25.0% |
| !!! | TGCTAGTTTTCTTATTTTGA+TGG | - | chr8_1:52381294-52381313 | Msa1200080:CDS | 25.0% |
| !!! | GCTAGTTTTCTTATTTTGAT+GGG | - | chr8_1:52381295-52381314 | Msa1200080:CDS | 25.0% |
| ! | TTTGTTTATCTTTGGTCAAA+TGG | - | chr8_1:52381537-52381556 | Msa1200080:intron | 25.0% |
| ! | TTTGGTCAAATGGAAATATA+AGG | - | chr8_1:52381547-52381566 | Msa1200080:intron | 25.0% |
| ! | TGATTAGAGAGAAAAAAATG+TGG | - | chr8_1:52381639-52381658 | Msa1200080:intron | 25.0% |
| !! | ATACTAAGTTTTGCATTAGA+AGG | - | chr8_1:52381726-52381745 | Msa1200080:intron | 25.0% |
| ! | TATAGCATCAAATTCAAATG+TGG | - | chr8_1:52381769-52381788 | Msa1200080:intron | 25.0% |
| ! | ATAGCATCAAATTCAAATGT+GGG | - | chr8_1:52381770-52381789 | Msa1200080:intron | 25.0% |
| ! | TATTCCAGATAACTTATTCA+TGG | + | chr8_1:52381977-52381996 | None:intergenic | 25.0% |
| ! | CATGATTTAGAAAAAAGAAG+GGG | + | chr8_1:52382000-52382019 | None:intergenic | 25.0% |
| ! | GTCATGATTTAGAAAAAAGA+AGG | + | chr8_1:52382002-52382021 | None:intergenic | 25.0% |
| ! | TAAATATTCTCCACATAATG+TGG | - | chr8_1:52382075-52382094 | Msa1200080:intron | 25.0% |
| !! | GTTTAATTGTTTTCTACTTC+TGG | - | chr8_1:52382143-52382162 | Msa1200080:intron | 25.0% |
| !!! | ACTGAACATCTTTAAAGTTA+TGG | + | chr8_1:52382273-52382292 | None:intergenic | 25.0% |
| ! | AAACATTTCAAGCATCAAAA+TGG | + | chr8_1:52382347-52382366 | None:intergenic | 25.0% |
| !! | ATGTGATCAAGATTTTATGT+AGG | - | chr8_1:52382463-52382482 | Msa1200080:five_prime_UTR | 25.0% |
| ! | GATTGTTGAGTTTTCTGAAT+TGG | - | chr8_1:52378361-52378380 | Msa1200080:three_prime_UTR | 30.0% |
| ! | TAACTACGAGATTTTCTACT+AGG | + | chr8_1:52378678-52378697 | None:intergenic | 30.0% |
| ! | AGAATTTTGTAGGATCTGTT+TGG | - | chr8_1:52378703-52378722 | Msa1200080:intron | 30.0% |
| ! | ATTTTTCTGAGCTTAACTAC+TGG | + | chr8_1:52378902-52378921 | None:intergenic | 30.0% |
| CATGTCCTTGTAAAAATGAA+GGG | - | chr8_1:52378924-52378943 | Msa1200080:intron | 30.0% | |
| !! | AGATACCCTTCATTTTTACA+AGG | + | chr8_1:52378932-52378951 | None:intergenic | 30.0% |
| !! | TTTTCTGAGAGGATAAAATC+TGG | + | chr8_1:52379107-52379126 | None:intergenic | 30.0% |
| ! | TGAATCCAATTTTCTCTACA+AGG | + | chr8_1:52379139-52379158 | None:intergenic | 30.0% |
| ATAGGAAATATGTCAAATGG+AGG | - | chr8_1:52379195-52379214 | Msa1200080:intron | 30.0% | |
| TAGGAAATATGTCAAATGGA+GGG | - | chr8_1:52379196-52379215 | Msa1200080:intron | 30.0% | |
| AACCAAAAACTTCAGTAGTT+TGG | - | chr8_1:52379262-52379281 | Msa1200080:intron | 30.0% | |
| ACCAAAAACTTCAGTAGTTT+GGG | - | chr8_1:52379263-52379282 | Msa1200080:intron | 30.0% | |
| ! | ACTAGATCAAGAAAAGTACA+GGG | - | chr8_1:52379443-52379462 | Msa1200080:intron | 30.0% |
| TCATGTTCAACAAATGCAAA+AGG | + | chr8_1:52379504-52379523 | None:intergenic | 30.0% | |
| ! | TTTGCATTTGTTGAACATGA+CGG | - | chr8_1:52379504-52379523 | Msa1200080:intron | 30.0% |
| GATGTTAAACAAATCTTTCC+TGG | + | chr8_1:52379657-52379676 | None:intergenic | 30.0% | |
| ! | TTTGTTTAACATCTGACTTG+TGG | - | chr8_1:52379664-52379683 | Msa1200080:CDS | 30.0% |
| ! | AGATGCATTATCTAGAGTAA+TGG | + | chr8_1:52379868-52379887 | None:intergenic | 30.0% |
| ATATAGCCCATCAACTATAA+GGG | + | chr8_1:52379943-52379962 | None:intergenic | 30.0% | |
| AATATAGCCCATCAACTATA+AGG | + | chr8_1:52379944-52379963 | None:intergenic | 30.0% | |
| ! | CTATATTTTCATGTACGATG+TGG | - | chr8_1:52379957-52379976 | Msa1200080:CDS | 30.0% |
| ! | ATATTTTCATGTACGATGTG+GGG | - | chr8_1:52379959-52379978 | Msa1200080:CDS | 30.0% |
| TTGAATTTAATCGTGCATGA+AGG | - | chr8_1:52379990-52380009 | Msa1200080:CDS | 30.0% | |
| ACTATCAAGCATCAAATAAC+TGG | + | chr8_1:52380174-52380193 | None:intergenic | 30.0% | |
| TCCGATAAATTATCAAAGTG+AGG | + | chr8_1:52380242-52380261 | None:intergenic | 30.0% | |
| TGATATCACAACTTTGTTCT+CGG | - | chr8_1:52380313-52380332 | Msa1200080:CDS | 30.0% | |
| GAGAATTCAGATGAAAATCA+AGG | - | chr8_1:52380379-52380398 | Msa1200080:CDS | 30.0% | |
| TGAAAGAATAACACTGTAAG+AGG | + | chr8_1:52380498-52380517 | None:intergenic | 30.0% | |
| !! | CAATTTGTTGAGTATTGCTA+TGG | - | chr8_1:52380551-52380570 | Msa1200080:CDS | 30.0% |
| AAAAAGCTTTCAGCTTATCA+AGG | + | chr8_1:52380619-52380638 | None:intergenic | 30.0% | |
| ! | AAATCAGACTCTTTTCTTGA+CGG | + | chr8_1:52380770-52380789 | None:intergenic | 30.0% |
| ! | GTCTGATTTGCAAAGTTATT+TGG | - | chr8_1:52380781-52380800 | Msa1200080:CDS | 30.0% |
| CATTTGCTTTCCAATATTCA+AGG | + | chr8_1:52380850-52380869 | None:intergenic | 30.0% | |
| GAATATTGGAAAGCAAATGA+AGG | - | chr8_1:52380851-52380870 | Msa1200080:CDS | 30.0% | |
| ! | TCACATTTGAGACGTAATTA+CGG | - | chr8_1:52381237-52381256 | Msa1200080:CDS | 30.0% |
| !! | TTACGGTTCAGATTTTGAAA+TGG | - | chr8_1:52381254-52381273 | Msa1200080:CDS | 30.0% |
| !! | TGAAATGGTTGTTATTTGTC+AGG | - | chr8_1:52381269-52381288 | Msa1200080:CDS | 30.0% |
| !! | GAAATGGTTGTTATTTGTCA+GGG | - | chr8_1:52381270-52381289 | Msa1200080:CDS | 30.0% |
| !! | AAATGGTTGTTATTTGTCAG+GGG | - | chr8_1:52381271-52381290 | Msa1200080:CDS | 30.0% |
| TGTTTGCATATGTTAATGCA+AGG | - | chr8_1:52381341-52381360 | Msa1200080:CDS | 30.0% | |
| ATGTTAATGCAAGGATGTAT+AGG | - | chr8_1:52381350-52381369 | Msa1200080:CDS | 30.0% | |
| GCTAGTAATGTGTTGAAATA+AGG | - | chr8_1:52381451-52381470 | Msa1200080:CDS | 30.0% | |
| !! | TTTGTCAGAAGTTTGTTATC+AGG | + | chr8_1:52381492-52381511 | None:intergenic | 30.0% |
| TAAGAAACATCATGTCCATT+TGG | - | chr8_1:52381576-52381595 | Msa1200080:intron | 30.0% | |
| TAGTCCATGAATAAGTTATC+TGG | - | chr8_1:52381970-52381989 | Msa1200080:intron | 30.0% | |
| AAAGAGATAACCACATTATG+TGG | + | chr8_1:52382088-52382107 | None:intergenic | 30.0% | |
| TCTTCAATCTATAGAAGAGA+AGG | + | chr8_1:52382227-52382246 | None:intergenic | 30.0% | |
| TCTGAACATCTTCAAAGTTA+TGG | + | chr8_1:52382311-52382330 | None:intergenic | 30.0% | |
| ATTCGAAATCTAGAGAATGC+CGG | + | chr8_1:52378158-52378177 | None:intergenic | 35.0% | |
| AGAGAATTGCTACAGATTCA+TGG | + | chr8_1:52378185-52378204 | None:intergenic | 35.0% | |
| ! | GGCATAGAAAGCATAGAAAA+TGG | - | chr8_1:52378556-52378575 | Msa1200080:intron | 35.0% |
| !! | CCTTCATTTTTACAAGGACA+TGG | + | chr8_1:52378926-52378945 | None:intergenic | 35.0% |
| CCATGTCCTTGTAAAAATGA+AGG | - | chr8_1:52378923-52378942 | Msa1200080:intron | 35.0% | |
| ! | CAATTTTCTCTACAAGGACA+TGG | + | chr8_1:52379133-52379152 | None:intergenic | 35.0% |
| CATGTCCTTGTAGAGAAAAT+TGG | - | chr8_1:52379131-52379150 | Msa1200080:intron | 35.0% | |
| AGGAAATATGTCAAATGGAG+GGG | - | chr8_1:52379197-52379216 | Msa1200080:intron | 35.0% | |
| ! | TCCCAAACTACTGAAGTTTT+TGG | + | chr8_1:52379267-52379286 | None:intergenic | 35.0% |
| !! | GAGAAGTATCTCGATGAAAA+TGG | - | chr8_1:52379294-52379313 | Msa1200080:intron | 35.0% |
| !!! | ACTAGTATTTTTTGCAGCGT+AGG | + | chr8_1:52379355-52379374 | None:intergenic | 35.0% |
| TACGCTGCAAAAAATACTAG+TGG | - | chr8_1:52379354-52379373 | Msa1200080:intron | 35.0% | |
| ! | CATTTGTTGAAATGTGTCGA+AGG | - | chr8_1:52379396-52379415 | Msa1200080:intron | 35.0% |
| ! | TACTTTTCTTGATCTAGTGG+TGG | + | chr8_1:52379441-52379460 | None:intergenic | 35.0% |
| ! | CTGTACTTTTCTTGATCTAG+TGG | + | chr8_1:52379444-52379463 | None:intergenic | 35.0% |
| ! | CACTAGATCAAGAAAAGTAC+AGG | - | chr8_1:52379442-52379461 | Msa1200080:intron | 35.0% |
| TTTCTTACACCCTCATGTTA+AGG | - | chr8_1:52379545-52379564 | Msa1200080:intron | 35.0% | |
| TTCTTACACCCTCATGTTAA+GGG | - | chr8_1:52379546-52379565 | Msa1200080:intron | 35.0% | |
| TAGAAATCCCCTTAACATGA+GGG | + | chr8_1:52379557-52379576 | None:intergenic | 35.0% | |
| ! | TGTTATTTACGGTCAATTCC+AGG | - | chr8_1:52379636-52379655 | Msa1200080:intron | 35.0% |
| ! | TGACTGCACATTTTGTGAAT+AGG | - | chr8_1:52379718-52379737 | Msa1200080:CDS | 35.0% |
| ! | ACATTTTGTGAATAGGAGGT+GGG | - | chr8_1:52379725-52379744 | Msa1200080:CDS | 35.0% |
| CAACAGACTTAGTAACTTCT+CGG | + | chr8_1:52379814-52379833 | None:intergenic | 35.0% | |
| TACTAAGTCTGTTGAGAGAT+TGG | - | chr8_1:52379820-52379839 | Msa1200080:CDS | 35.0% | |
| ACTAAGTCTGTTGAGAGATT+GGG | - | chr8_1:52379821-52379840 | Msa1200080:CDS | 35.0% | |
| TGCATCTAACAATGATGCAA+TGG | - | chr8_1:52379881-52379900 | Msa1200080:CDS | 35.0% | |
| !! | AATCGTGCATGAAGGTATTA+AGG | - | chr8_1:52379998-52380017 | Msa1200080:CDS | 35.0% |
| GTGTGTGTGAAGTATATAAG+AGG | - | chr8_1:52380050-52380069 | Msa1200080:CDS | 35.0% | |
| !! | TTGATGCTTGATAGTGCTAT+CGG | - | chr8_1:52380179-52380198 | Msa1200080:CDS | 35.0% |
| ! | CTTTGATAATTTATCGGACG+AGG | - | chr8_1:52380244-52380263 | Msa1200080:CDS | 35.0% |
| GATATCACAACTTTGTTCTC+GGG | - | chr8_1:52380314-52380333 | Msa1200080:CDS | 35.0% | |
| TCAAGATCAAGTATGTTGCA+TGG | - | chr8_1:52380436-52380455 | Msa1200080:CDS | 35.0% | |
| TATTGCTATGGGAAGTTGTT+TGG | - | chr8_1:52380563-52380582 | Msa1200080:CDS | 35.0% | |
| AGAATATCTCAAGTCCTCTA+AGG | - | chr8_1:52380643-52380662 | Msa1200080:CDS | 35.0% | |
| ! | AGTCGCTTGATGTAATTTGT+GGG | + | chr8_1:52380709-52380728 | None:intergenic | 35.0% |
| AAGTCGCTTGATGTAATTTG+TGG | + | chr8_1:52380710-52380729 | None:intergenic | 35.0% | |
| ATATCCTGAAGTAGCTATGA+TGG | - | chr8_1:52380877-52380896 | Msa1200080:CDS | 35.0% | |
| CATTATTGTGCACTCATGAT+TGG | - | chr8_1:52381014-52381033 | Msa1200080:CDS | 35.0% | |
| TACACATGCCTCATCTTTAA+AGG | - | chr8_1:52381143-52381162 | Msa1200080:CDS | 35.0% | |
| ACACATGCCTCATCTTTAAA+GGG | - | chr8_1:52381144-52381163 | Msa1200080:CDS | 35.0% | |
| ! | TCTTTAAAGGGGTCTCATTT+AGG | - | chr8_1:52381156-52381175 | Msa1200080:CDS | 35.0% |
| !! | TTTGATGGGTTTGATTGTTG+TGG | - | chr8_1:52381309-52381328 | Msa1200080:CDS | 35.0% |
| CACATTACTAGCATCTCATT+TGG | + | chr8_1:52381443-52381462 | None:intergenic | 35.0% | |
| CACTAATTGTCTCAATCTAG+AGG | + | chr8_1:52381614-52381633 | None:intergenic | 35.0% | |
| TTAATGCAAGGATGTCTACT+TGG | - | chr8_1:52381944-52381963 | Msa1200080:intron | 35.0% | |
| ATGACTGACGAGTGAAGAAT+CGG | + | chr8_1:52378235-52378254 | None:intergenic | 40.0% | |
| AAGCTCTTCTCGAAAGCTTA+TGG | - | chr8_1:52378807-52378826 | Msa1200080:intron | 40.0% | |
| TGGTATAAGCACTTGACAGT+GGG | + | chr8_1:52378882-52378901 | None:intergenic | 40.0% | |
| TCGATGAAAATGGACAACCA+AGG | - | chr8_1:52379304-52379323 | Msa1200080:intron | 40.0% | |
| CGATGAAAATGGACAACCAA+GGG | - | chr8_1:52379305-52379324 | Msa1200080:intron | 40.0% | |
| CAATTTAAGCATCTTGCCCT+TGG | + | chr8_1:52379324-52379343 | None:intergenic | 40.0% | |
| TTGTTGAAATGTGTCGAAGG+AGG | - | chr8_1:52379399-52379418 | Msa1200080:intron | 40.0% | |
| TGTTGAAATGTGTCGAAGGA+GGG | - | chr8_1:52379400-52379419 | Msa1200080:intron | 40.0% | |
| !! | TTGATCTAGTGGTGGATAAG+AGG | + | chr8_1:52379433-52379452 | None:intergenic | 40.0% |
| ! | TGTTGAACATGACGGAATTG+AGG | - | chr8_1:52379512-52379531 | Msa1200080:intron | 40.0% |
| TCTTACACCCTCATGTTAAG+GGG | - | chr8_1:52379547-52379566 | Msa1200080:intron | 40.0% | |
| CTAGAAATCCCCTTAACATG+AGG | + | chr8_1:52379558-52379577 | None:intergenic | 40.0% | |
| ! | CTGCACATTTTGTGAATAGG+AGG | - | chr8_1:52379721-52379740 | Msa1200080:CDS | 40.0% |
| ! | CACATTTTGTGAATAGGAGG+TGG | - | chr8_1:52379724-52379743 | Msa1200080:CDS | 40.0% |
| ! | GGAGTTAGAGAAAAAAGTGC+TGG | - | chr8_1:52379746-52379765 | Msa1200080:CDS | 40.0% |
| AAATTAACTCCGGTATGAGG+TGG | + | chr8_1:52379789-52379808 | None:intergenic | 40.0% | |
| ACCTCATACCGGAGTTAATT+TGG | - | chr8_1:52379788-52379807 | Msa1200080:CDS | 40.0% | |
| CTAAGTCTGTTGAGAGATTG+GGG | - | chr8_1:52379822-52379841 | Msa1200080:CDS | 40.0% | |
| TTGAAGAGACACCCATCATT+TGG | - | chr8_1:52379912-52379931 | Msa1200080:CDS | 40.0% | |
| TAAGGGAAGGTCCAAATGAT+GGG | + | chr8_1:52379926-52379945 | None:intergenic | 40.0% | |
| ATAAGGGAAGGTCCAAATGA+TGG | + | chr8_1:52379927-52379946 | None:intergenic | 40.0% | |
| GACCTTCCCTTATAGTTGAT+GGG | - | chr8_1:52379934-52379953 | Msa1200080:CDS | 40.0% | |
| !! | CATGAAGGTATTAAGGCAGT+AGG | - | chr8_1:52380005-52380024 | Msa1200080:CDS | 40.0% |
| ACACACTCTGATCTTATCCA+AGG | + | chr8_1:52380036-52380055 | None:intergenic | 40.0% | |
| GAAGTATATAAGAGGCTCAG+AGG | - | chr8_1:52380058-52380077 | Msa1200080:CDS | 40.0% | |
| TAACTGGAATTCCACCGAAT+AGG | + | chr8_1:52380158-52380177 | None:intergenic | 40.0% | |
| !! | TTGATAGTGCTATCGGTCTA+AGG | - | chr8_1:52380186-52380205 | Msa1200080:CDS | 40.0% |
| ! | TGATAGTGCTATCGGTCTAA+GGG | - | chr8_1:52380187-52380206 | Msa1200080:CDS | 40.0% |
| AGGATCAATATCCTGTAGGA+GGG | + | chr8_1:52380222-52380241 | None:intergenic | 40.0% | |
| AGTGAGGATCAATATCCTGT+AGG | + | chr8_1:52380226-52380245 | None:intergenic | 40.0% | |
| ATAATTTATCGGACGAGGAG+TGG | - | chr8_1:52380249-52380268 | Msa1200080:CDS | 40.0% | |
| ACCACTAAAATAGAGGTTGG+CGG | + | chr8_1:52380354-52380373 | None:intergenic | 40.0% | |
| CACACCACTAAAATAGAGGT+TGG | + | chr8_1:52380357-52380376 | None:intergenic | 40.0% | |
| !!! | ACCTCTATTTTAGTGGTGTG+TGG | - | chr8_1:52380357-52380376 | Msa1200080:CDS | 40.0% |
| TCCACACACCACTAAAATAG+AGG | + | chr8_1:52380361-52380380 | None:intergenic | 40.0% | |
| TTGCATGGCCAAAAGAATGA+AGG | - | chr8_1:52380451-52380470 | Msa1200080:CDS | 40.0% | |
| ! | AAGTCCTCTAAGGAGATAAG+TGG | - | chr8_1:52380653-52380672 | Msa1200080:CDS | 40.0% |
| TGAACCACTTATCTCCTTAG+AGG | + | chr8_1:52380660-52380679 | None:intergenic | 40.0% | |
| TCTTCACAAAGCTCTGTTAG+AGG | - | chr8_1:52380680-52380699 | Msa1200080:CDS | 40.0% | |
| TCTGATGCAACAGTGGTAAT+TGG | + | chr8_1:52380923-52380942 | None:intergenic | 40.0% | |
| TCAGAGTCATCGTTCAGTAT+AGG | - | chr8_1:52380938-52380957 | Msa1200080:CDS | 40.0% | |
| AGGCAAAAGAGAAACTAACC+TGG | + | chr8_1:52381052-52381071 | None:intergenic | 40.0% | |
| ! | CACATGCCTCATCTTTAAAG+GGG | - | chr8_1:52381145-52381164 | Msa1200080:CDS | 40.0% |
| ! | ATGAGACCCCTTTAAAGATG+AGG | + | chr8_1:52381154-52381173 | None:intergenic | 40.0% |
| !! | TCAGAAGTTTGTTATCAGGC+AGG | + | chr8_1:52381488-52381507 | None:intergenic | 40.0% |
| ! | AGGAAGCACAGATAACCAAA+TGG | + | chr8_1:52381594-52381613 | None:intergenic | 40.0% |
| TTCAAATGTGGGCATTCAGT+TGG | - | chr8_1:52381781-52381800 | Msa1200080:intron | 40.0% | |
| ! | ACAAAAGCTACCCTGTTTCT+AGG | + | chr8_1:52381905-52381924 | None:intergenic | 40.0% |
| GGTTTGCATAGGTTAATGCA+AGG | - | chr8_1:52381932-52381951 | Msa1200080:intron | 40.0% | |
| GCAGCTGGAATAAATCTTGA+TGG | - | chr8_1:52382175-52382194 | Msa1200080:intron | 40.0% | |
| !! | TGATGGTCGTGAATTTGTTG+AGG | - | chr8_1:52382192-52382211 | Msa1200080:intron | 40.0% |
| CTATAGAAGAGAAGGCTGAA+AGG | + | chr8_1:52382219-52382238 | None:intergenic | 40.0% | |
| ATCGGTGACGACTGAAGAAT+GGG | + | chr8_1:52378217-52378236 | None:intergenic | 45.0% | |
| AATCGGTGACGACTGAAGAA+TGG | + | chr8_1:52378218-52378237 | None:intergenic | 45.0% | |
| ! | AAGCACTTGACAGTGGGTTT+GGG | + | chr8_1:52378876-52378895 | None:intergenic | 45.0% |
| ! | TAAGCACTTGACAGTGGGTT+TGG | + | chr8_1:52378877-52378896 | None:intergenic | 45.0% |
| CTGGTATAAGCACTTGACAG+TGG | + | chr8_1:52378883-52378902 | None:intergenic | 45.0% | |
| ! | GGACATGGTGTTTTTCTGAG+AGG | + | chr8_1:52379118-52379137 | None:intergenic | 45.0% |
| GTTGAAATGTGTCGAAGGAG+GGG | - | chr8_1:52379401-52379420 | Msa1200080:intron | 45.0% | |
| !! | AGGTGGTGGAAAGTGAAAGA+AGG | + | chr8_1:52379772-52379791 | None:intergenic | 45.0% |
| GCCAAATTAACTCCGGTATG+AGG | + | chr8_1:52379792-52379811 | None:intergenic | 45.0% | |
| CTTCTCGGCCAAATTAACTC+CGG | + | chr8_1:52379799-52379818 | None:intergenic | 45.0% | |
| GGACCTTCCCTTATAGTTGA+TGG | - | chr8_1:52379933-52379952 | Msa1200080:CDS | 45.0% | |
| AGCCCATCAACTATAAGGGA+AGG | + | chr8_1:52379939-52379958 | None:intergenic | 45.0% | |
| TCCGTCAAGACATGCCTATT+CGG | - | chr8_1:52380141-52380160 | Msa1200080:CDS | 45.0% | |
| ACCGAATAGGCATGTCTTGA+CGG | + | chr8_1:52380145-52380164 | None:intergenic | 45.0% | |
| GAGGATCAATATCCTGTAGG+AGG | + | chr8_1:52380223-52380242 | None:intergenic | 45.0% | |
| CTAAAATAGAGGTTGGCGGT+TGG | + | chr8_1:52380350-52380369 | None:intergenic | 45.0% | |
| !! | ACCGCCAACCTCTATTTTAG+TGG | - | chr8_1:52380350-52380369 | Msa1200080:CDS | 45.0% |
| ! | TCAAGCGACTTCGCAGATTT+TGG | - | chr8_1:52380719-52380738 | Msa1200080:CDS | 45.0% |
| GAGTCATCGTTCAGTATAGG+TGG | - | chr8_1:52380941-52380960 | Msa1200080:CDS | 45.0% | |
| !! | TGCACTCATGATTGGCTTTG+TGG | - | chr8_1:52381022-52381041 | Msa1200080:CDS | 45.0% |
| TGGGTTTGATTGTTGTGGTC+TGG | - | chr8_1:52381314-52381333 | Msa1200080:CDS | 45.0% | |
| AAAGTGACACACCCTTTCAG+TGG | - | chr8_1:52381811-52381830 | Msa1200080:intron | 45.0% | |
| AAGTGACACACCCTTTCAGT+GGG | - | chr8_1:52381812-52381831 | Msa1200080:intron | 45.0% | |
| CAGAGCTAGCTAACTCTTGA+GGG | + | chr8_1:52381844-52381863 | None:intergenic | 45.0% | |
| TCAGAGCTAGCTAACTCTTG+AGG | + | chr8_1:52381845-52381864 | None:intergenic | 45.0% | |
| AATTGTCGGGACCTAGAAAC+AGG | - | chr8_1:52381891-52381910 | Msa1200080:intron | 45.0% | |
| ATTGTCGGGACCTAGAAACA+GGG | - | chr8_1:52381892-52381911 | Msa1200080:intron | 45.0% | |
| ! | AGGGTAGCTTTTGTGTGTGT+GGG | - | chr8_1:52381911-52381930 | Msa1200080:intron | 45.0% |
| TTGTGTGTGTGGGTTTGCAT+AGG | - | chr8_1:52381921-52381940 | Msa1200080:intron | 45.0% | |
| !!! | TTCTGGTTCTCTTTTGCAGC+TGG | - | chr8_1:52382160-52382179 | Msa1200080:intron | 45.0% |
| TCAAGAGTCAGTAGTGCTGC+TGG | - | chr8_1:52378642-52378661 | Msa1200080:intron | 50.0% | |
| ! | AGCACTTGACAGTGGGTTTG+GGG | + | chr8_1:52378875-52378894 | None:intergenic | 50.0% |
| GTACAGGGAGAAGATAGCTC+AGG | - | chr8_1:52379458-52379477 | Msa1200080:intron | 50.0% | |
| CACTTTCCACCACCTCATAC+CGG | - | chr8_1:52379777-52379796 | Msa1200080:CDS | 50.0% | |
| TTAACTCCGGTATGAGGTGG+TGG | + | chr8_1:52379786-52379805 | None:intergenic | 50.0% | |
| TAAGGCAGTAGGTGCTTCCT+TGG | - | chr8_1:52380016-52380035 | Msa1200080:CDS | 50.0% | |
| GTCAAGACATGCCTATTCGG+TGG | - | chr8_1:52380144-52380163 | Msa1200080:CDS | 50.0% | |
| !! | GGAAGCATTTACCCTCCTAC+AGG | - | chr8_1:52380208-52380227 | Msa1200080:CDS | 50.0% |
| CGTGCCATCATAGCTACTTC+AGG | + | chr8_1:52380884-52380903 | None:intergenic | 50.0% | |
| CGATGACTCTGATGCAACAG+TGG | + | chr8_1:52380930-52380949 | None:intergenic | 50.0% | |
| !! | GATTGGCTTTGTGGAACTCC+AGG | - | chr8_1:52381031-52381050 | Msa1200080:CDS | 50.0% |
| AGCTAGCTAACTCTTGAGGG+TGG | + | chr8_1:52381841-52381860 | None:intergenic | 50.0% | |
| ! | CAGGGTAGCTTTTGTGTGTG+TGG | - | chr8_1:52381910-52381929 | Msa1200080:intron | 50.0% |
| GGTGACGACTGAAGAATGGG+TGG | + | chr8_1:52378214-52378233 | None:intergenic | 55.0% | |
| ! | GCACTTGACAGTGGGTTTGG+GGG | + | chr8_1:52378874-52378893 | None:intergenic | 55.0% |
| !! | ATCGGACGAGGAGTGGATTG+AGG | - | chr8_1:52380256-52380275 | Msa1200080:CDS | 55.0% |
| GAGGTTGGCGGTTGGATAAG+TGG | + | chr8_1:52380342-52380361 | None:intergenic | 55.0% | |
| GGGAAGTTGTTTGGCAGCGA+TGG | - | chr8_1:52380572-52380591 | Msa1200080:CDS | 55.0% | |
| AGGGTGGAGACCCACTGAAA+GGG | + | chr8_1:52381825-52381844 | None:intergenic | 55.0% | |
| GAGGGTGGAGACCCACTGAA+AGG | + | chr8_1:52381826-52381845 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 52378155 | 52382539 | 52378155 | ID=Msa1200080;Name=Msa1200080 |
| chr8_1 | mRNA | 52378155 | 52382539 | 52378155 | ID=Msa1200080-mRNA-1;Parent=Msa1200080;Name=Msa1200080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|0.5|0.66|3|296|637 |
| chr8_1 | exon | 52378155 | 52378515 | 52378155 | ID=Msa1200080-mRNA-1:exon:16694;Parent=Msa1200080-mRNA-1 |
| chr8_1 | exon | 52379642 | 52381495 | 52379642 | ID=Msa1200080-mRNA-1:exon:16693;Parent=Msa1200080-mRNA-1 |
| chr8_1 | exon | 52382410 | 52382539 | 52382410 | ID=Msa1200080-mRNA-1:exon:16692;Parent=Msa1200080-mRNA-1 |
| chr8_1 | five_prime_UTR | 52382410 | 52382539 | 52382410 | ID=Msa1200080-mRNA-1:five_prime_utr;Parent=Msa1200080-mRNA-1 |
| chr8_1 | five_prime_UTR | 52381491 | 52381495 | 52381491 | ID=Msa1200080-mRNA-1:five_prime_utr;Parent=Msa1200080-mRNA-1 |
| chr8_1 | CDS | 52379642 | 52381490 | 52379642 | ID=Msa1200080-mRNA-1:cds;Parent=Msa1200080-mRNA-1 |
| chr8_1 | CDS | 52378451 | 52378515 | 52378451 | ID=Msa1200080-mRNA-1:cds;Parent=Msa1200080-mRNA-1 |
| chr8_1 | three_prime_UTR | 52378155 | 52378450 | 52378155 | ID=Msa1200080-mRNA-1:three_prime_utr;Parent=Msa1200080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
