Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0750650 | 0.828215 | 1.017305e-54 | -8.615850e-47 |
| Msa0002240 | Msa0750650 | 0.800164 | 1.638944e-48 | -8.615850e-47 |
| Msa0011660 | Msa0750650 | -0.826329 | 2.879667e-54 | -8.615850e-47 |
| Msa0021210 | Msa0750650 | 0.841738 | 3.961650e-58 | -8.615850e-47 |
| Msa0031520 | Msa0750650 | 0.802370 | 5.794689e-49 | -8.615850e-47 |
| Msa0037880 | Msa0750650 | 0.800012 | 1.759236e-48 | -8.615850e-47 |
| Msa0089820 | Msa0750650 | 0.817886 | 2.613100e-52 | -8.615850e-47 |
| Msa0114430 | Msa0750650 | 0.836154 | 1.104950e-56 | -8.615850e-47 |
| Msa0602980 | Msa0750650 | 0.818067 | 2.377828e-52 | -8.615850e-47 |
| Msa0632740 | Msa0750650 | 0.800085 | 1.700785e-48 | -8.615850e-47 |
| Msa0644660 | Msa0750650 | 0.807413 | 5.117017e-50 | -8.615850e-47 |
| Msa0657580 | Msa0750650 | 0.810904 | 9.139202e-51 | -8.615850e-47 |
| Msa0663800 | Msa0750650 | 0.816812 | 4.560439e-52 | -8.615850e-47 |
| Msa0672480 | Msa0750650 | 0.801732 | 7.837316e-49 | -8.615850e-47 |
| Msa0680200 | Msa0750650 | 0.816585 | 5.126931e-52 | -8.615850e-47 |
| Msa0705190 | Msa0750650 | 0.803910 | 2.782455e-49 | -8.615850e-47 |
| Msa0747100 | Msa0750650 | 0.803300 | 3.723248e-49 | -8.615850e-47 |
| Msa0750650 | Msa0768290 | 0.808600 | 2.859775e-50 | -8.615850e-47 |
| Msa0750650 | Msa0768370 | 0.811842 | 5.719403e-51 | -8.615850e-47 |
| Msa0750650 | Msa0769980 | 0.818189 | 2.231545e-52 | -8.615850e-47 |
| Msa0750650 | Msa0808080 | 0.817257 | 3.622449e-52 | -8.615850e-47 |
| Msa0750650 | Msa0813860 | 0.818646 | 1.758625e-52 | -8.615850e-47 |
| Msa0750650 | Msa0844410 | 0.851330 | 9.524206e-61 | -8.615850e-47 |
| Msa0750650 | Msa0844420 | 0.871636 | 5.877191e-67 | -8.615850e-47 |
| Msa0750650 | Msa0844440 | 0.852540 | 4.316213e-61 | -8.615850e-47 |
| Msa0750650 | Msa0844450 | 0.842725 | 2.169414e-58 | -8.615850e-47 |
| Msa0750650 | Msa0844470 | 0.851329 | 9.530317e-61 | -8.615850e-47 |
| Msa0750650 | Msa0844490 | 0.846692 | 1.851132e-59 | -8.615850e-47 |
| Msa0750650 | Msa0849030 | 0.832925 | 7.155690e-56 | -8.615850e-47 |
| Msa0750650 | Msa0857640 | 0.810739 | 9.922083e-51 | -8.615850e-47 |
| Msa0750650 | Msa0877250 | 0.800707 | 1.270316e-48 | -8.615850e-47 |
| Msa0750650 | Msa0887630 | 0.807670 | 4.513134e-50 | -8.615850e-47 |
| Msa0750650 | Msa0897330 | 0.806511 | 7.937872e-50 | -8.615850e-47 |
| Msa0750650 | Msa0899430 | 0.804436 | 2.162083e-49 | -8.615850e-47 |
| Msa0750650 | Msa0903620 | 0.801235 | 9.910414e-49 | -8.615850e-47 |
| Msa0750650 | Msa0914760 | 0.810634 | 1.045585e-50 | -8.615850e-47 |
| Msa0750650 | Msa0927380 | 0.819341 | 1.222232e-52 | -8.615850e-47 |
| Msa0750650 | Msa0936300 | 0.828174 | 1.041118e-54 | -8.615850e-47 |
| Msa0750650 | Msa0948320 | 0.815469 | 9.096595e-52 | -8.615850e-47 |
| Msa0750650 | Msa0953120 | 0.813915 | 2.010331e-51 | -8.615850e-47 |
| Msa0750650 | Msa0958550 | 0.807042 | 6.133228e-50 | -8.615850e-47 |
| Msa0750650 | Msa0966750 | 0.819732 | 9.950941e-53 | -8.615850e-47 |
| Msa0750650 | Msa0969810 | 0.821091 | 4.855172e-53 | -8.615850e-47 |
| Msa0750650 | Msa0973100 | 0.825039 | 5.825281e-54 | -8.615850e-47 |
| Msa0750650 | Msa0974080 | 0.820083 | 8.273309e-53 | -8.615850e-47 |
| Msa0750650 | Msa0974950 | 0.802774 | 4.783264e-49 | -8.615850e-47 |
| Msa0750650 | Msa1037420 | 0.813006 | 3.184450e-51 | -8.615850e-47 |
| Msa0750650 | Msa1051210 | 0.805867 | 1.084929e-49 | -8.615850e-47 |
| Msa0750650 | Msa1072900 | 0.803173 | 3.954698e-49 | -8.615850e-47 |
| Msa0750650 | Msa1113170 | 0.810097 | 1.365125e-50 | -8.615850e-47 |
| Msa0750650 | Msa1119930 | 0.811073 | 8.401778e-51 | -8.615850e-47 |
| Msa0750650 | Msa1133230 | 0.801220 | 9.980082e-49 | -8.615850e-47 |
| Msa0750650 | Msa1137570 | 0.807359 | 5.253682e-50 | -8.615850e-47 |
| Msa0750650 | Msa1156020 | 0.801571 | 8.454812e-49 | -8.615850e-47 |
| Msa0750650 | Msa1200080 | 0.819060 | 1.416071e-52 | -8.615850e-47 |
| Msa0750650 | Msa1227730 | 0.838014 | 3.698854e-57 | -8.615850e-47 |
| Msa0750650 | Msa1232740 | 0.820857 | 5.496291e-53 | -8.615850e-47 |
| Msa0750650 | Msa1237980 | 0.807711 | 4.422422e-50 | -8.615850e-47 |
| Msa0750650 | Msa1254730 | 0.800174 | 1.631078e-48 | -8.615850e-47 |
| Msa0750650 | Msa1276600 | 0.823810 | 1.133666e-53 | -8.615850e-47 |
| Msa0750650 | Msa1286800 | 0.804279 | 2.331072e-49 | -8.615850e-47 |
| Msa0750650 | Msa1287190 | 0.810551 | 1.089521e-50 | -8.615850e-47 |
| Msa0750650 | Msa1305810 | 0.805550 | 1.264662e-49 | -8.615850e-47 |
| Msa0750650 | Msa1306760 | 0.817608 | 3.019720e-52 | -8.615850e-47 |
| Msa0750650 | Msa1313320 | 0.828537 | 8.507212e-55 | -8.615850e-47 |
| Msa0750650 | Msa1350680 | 0.820011 | 8.593731e-53 | -8.615850e-47 |
| Msa0750650 | Msa1358670 | 0.804664 | 1.937923e-49 | -8.615850e-47 |
| Msa0750650 | Msa1366970 | 0.835976 | 1.226311e-56 | -8.615850e-47 |
| Msa0750650 | Msa1390700 | 0.816385 | 5.682025e-52 | -8.615850e-47 |
| Msa0750650 | Msa1392910 | 0.811322 | 7.418246e-51 | -8.615850e-47 |
| Msa0750650 | Msa1394500 | 0.817387 | 3.386318e-52 | -8.615850e-47 |
| Msa0750650 | Msa1403340 | 0.805114 | 1.560930e-49 | -8.615850e-47 |
| Msa0750650 | Msa1410100 | 0.806116 | 9.615911e-50 | -8.615850e-47 |
| Msa0750650 | Msa1412530 | 0.831641 | 1.487547e-55 | -8.615850e-47 |
| Msa0750650 | Msa1418850 | 0.802039 | 6.776594e-49 | -8.615850e-47 |
| Msa0750650 | Msa1419990 | 0.850523 | 1.607551e-60 | -8.615850e-47 |
| Msa0750650 | Msa1430410 | 0.820151 | 7.979611e-53 | -8.615850e-47 |
| Msa0750650 | Msa1437270 | 0.804830 | 1.788918e-49 | -8.615850e-47 |
| Msa0750650 | Msa1437560 | 0.820104 | 8.181617e-53 | -8.615850e-47 |
| Msa0750650 | Msa1458750 | 0.811754 | 5.977384e-51 | -8.615850e-47 |
| Msa0150840 | Msa0750650 | 0.852909 | 3.387908e-61 | -8.615850e-47 |
| Msa0167980 | Msa0750650 | 0.807952 | 3.930721e-50 | -8.615850e-47 |
| Msa0171140 | Msa0750650 | 0.810661 | 1.031553e-50 | -8.615850e-47 |
| Msa0180500 | Msa0750650 | 0.924349 | 7.934515e-90 | -8.615850e-47 |
| Msa0219240 | Msa0750650 | 0.811062 | 8.449224e-51 | -8.615850e-47 |
| Msa0234270 | Msa0750650 | 0.831643 | 1.485648e-55 | -8.615850e-47 |
| Msa0234320 | Msa0750650 | 0.821688 | 3.534985e-53 | -8.615850e-47 |
| Msa0379570 | Msa0750650 | 0.816820 | 4.540971e-52 | -8.615850e-47 |
| Msa0394280 | Msa0750650 | 0.813119 | 3.007102e-51 | -8.615850e-47 |
| Msa0413410 | Msa0750650 | 0.801464 | 8.894328e-49 | -8.615850e-47 |
| Msa0425790 | Msa0750650 | 0.805856 | 1.090930e-49 | -8.615850e-47 |
| Msa0465200 | Msa0750650 | 0.815171 | 1.060003e-51 | -8.615850e-47 |
| Msa0481970 | Msa0750650 | 0.815171 | 1.059596e-51 | -8.615850e-47 |
| Msa0245310 | Msa0750650 | 0.801118 | 1.047011e-48 | -8.615850e-47 |
| Msa0255080 | Msa0750650 | 0.824604 | 7.375097e-54 | -8.615850e-47 |
| Msa0257490 | Msa0750650 | 0.808055 | 3.737301e-50 | -8.615850e-47 |
| Msa0259210 | Msa0750650 | 0.814484 | 1.505221e-51 | -8.615850e-47 |
| Msa0259370 | Msa0750650 | 0.804688 | 1.915618e-49 | -8.615850e-47 |
| Msa0271770 | Msa0750650 | 0.834776 | 2.464602e-56 | -8.615850e-47 |
| Msa0278110 | Msa0750650 | 0.822336 | 2.501332e-53 | -8.615850e-47 |
| Msa0289330 | Msa0750650 | 0.803643 | 3.160310e-49 | -8.615850e-47 |
| Msa0298460 | Msa0750650 | 0.810064 | 1.388178e-50 | -8.615850e-47 |
| Msa0326460 | Msa0750650 | 0.807292 | 5.427716e-50 | -8.615850e-47 |
| Msa0336310 | Msa0750650 | 0.816301 | 5.933552e-52 | -8.615850e-47 |
| Msa0336320 | Msa0750650 | 0.824722 | 6.920691e-54 | -8.615850e-47 |
| Msa0342750 | Msa0750650 | 0.813014 | 3.171892e-51 | -8.615850e-47 |
| Msa0498650 | Msa0750650 | 0.800097 | 1.690602e-48 | -8.615850e-47 |
| Msa0518950 | Msa0750650 | 0.811485 | 6.838726e-51 | -8.615850e-47 |
| Msa0519000 | Msa0750650 | 0.822432 | 2.375857e-53 | -8.615850e-47 |
| Msa0521740 | Msa0750650 | 0.811811 | 5.808833e-51 | -8.615850e-47 |
| Msa0523940 | Msa0750650 | 0.804427 | 2.171710e-49 | -8.615850e-47 |
| Msa0530400 | Msa0750650 | 0.805937 | 1.048929e-49 | -8.615850e-47 |
| Msa0542290 | Msa0750650 | 0.809888 | 1.514680e-50 | -8.615850e-47 |
| Msa0545700 | Msa0750650 | 0.844529 | 7.145554e-59 | -8.615850e-47 |
| Msa0548920 | Msa0750650 | 0.820878 | 5.433443e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTTCAGCTGCTGGTTT+TGG | 0.254403 | 5_2:-4078134 | Msa0750650:CDS |
| GGCTGCTGTCATGGTTCTCT+TGG | 0.318037 | 5_2:-4078155 | Msa0750650:CDS |
| CAGTCTCAGAAAGCAGAATC+TGG | 0.377300 | 5_2:+4077259 | None:intergenic |
| TTCTGAGACTGATGCATGTC+AGG | 0.379849 | 5_2:-4077247 | Msa0750650:CDS |
| AGAAAAGGCAGGTTTGAATC+TGG | 0.396836 | 5_2:-4077760 | Msa0750650:intron |
| GGTCGGCGGTTGCAGCTGTT+TGG | 0.403517 | 5_2:-4078091 | Msa0750650:CDS |
| TCTCTTGGAAGTTCAGCTGC+TGG | 0.415448 | 5_2:-4078140 | Msa0750650:CDS |
| GAGGTGTTGGAACAAAGTTC+TGG | 0.428819 | 5_2:-4077614 | Msa0750650:intron |
| TAGAAGTTGTTAGGATTTCA+AGG | 0.435463 | 5_2:-4077292 | Msa0750650:intron |
| ACAGCGATGAAGGTGCTTGA+TGG | 0.463862 | 5_2:+4077222 | None:intergenic |
| ACTTTGCGAAACAGCGATGA+AGG | 0.492585 | 5_2:+4077212 | None:intergenic |
| TATAGTGCACCAACGAAAAG+TGG | 0.498962 | 5_2:+4077648 | None:intergenic |
| GGTGGTTTCGGCTGCTGTCA+TGG | 0.499140 | 5_2:-4078164 | Msa0750650:CDS |
| ACAAAACTGTATCTTTGAGC+AGG | 0.508311 | 5_2:-4077154 | Msa0750650:CDS |
| TACTCACAGAAGAGAGGTGT+TGG | 0.518746 | 5_2:-4077627 | Msa0750650:CDS |
| ACTGTATCTTTGAGCAGGGC+AGG | 0.521107 | 5_2:-4077149 | None:intergenic |
| GGTTGCCGACTGGCATCTAG+AGG | 0.548162 | 5_2:-4078113 | Msa0750650:CDS |
| GTTGTTAGGATTTCAAGGGA+TGG | 0.556184 | 5_2:-4077287 | Msa0750650:intron |
| GGTAGCGAGAGTGAGAGAAA+AGG | 0.557787 | 5_2:-4077775 | Msa0750650:intron |
| CCAACTTGGTACATTTCAGA+AGG | 0.560788 | 5_2:+4077181 | None:intergenic |
| CCTTCTGAAATGTACCAAGT+TGG | 0.566723 | 5_2:-4077181 | Msa0750650:CDS |
| AGAAGTTGTTAGGATTTCAA+GGG | 0.583374 | 5_2:-4077291 | Msa0750650:intron |
| CAACTTGGTACATTTCAGAA+GGG | 0.589447 | 5_2:+4077182 | None:intergenic |
| CAAAACTGTATCTTTGAGCA+GGG | 0.601758 | 5_2:-4077153 | Msa0750650:CDS |
| GTTGCCGACTGGCATCTAGA+GGG | 0.613589 | 5_2:-4078112 | Msa0750650:CDS |
| CCGACTGGCATCTAGAGGGT+CGG | 0.622077 | 5_2:-4078108 | Msa0750650:CDS |
| GCGAGAGTGAGAGAAAAGGC+AGG | 0.628818 | 5_2:-4077771 | Msa0750650:CDS |
| TGAATCTAGAACAGAGCTGT+CGG | 0.629591 | 5_2:-4078497 | Msa0750650:intron |
| ACTGGCATCTAGAGGGTCGG+CGG | 0.669702 | 5_2:-4078105 | Msa0750650:CDS |
| GCACTATACTCACAGAAGAG+AGG | 0.681055 | 5_2:-4077633 | Msa0750650:CDS |
| CCGACCCTCTAGATGCCAGT+CGG | 0.682970 | 5_2:+4078108 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAGAAATTTATAATCTA+TGG | + | chr5_2:4077262-4077281 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATCATTGGT+TGG | - | chr5_2:4077309-4077328 | Msa0750650:intron | 15.0% |
| !! | TTAATAAAAAAAAGTCCATT+TGG | - | chr5_2:4077855-4077874 | Msa0750650:intron | 15.0% |
| !! | AATTAAATTAATGTACCAAA+TGG | + | chr5_2:4077873-4077892 | None:intergenic | 15.0% |
| !!! | TAATTTAATTTCCAATTATG+AGG | - | chr5_2:4077883-4077902 | Msa0750650:intron | 15.0% |
| !! | TAAGAGAAATTTATAATCTA+TGG | + | chr5_2:4077262-4077281 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATCATTGGT+TGG | - | chr5_2:4077309-4077328 | Msa0750650:intron | 15.0% |
| !! | TTAATAAAAAAAAGTCCATT+TGG | - | chr5_2:4077855-4077874 | Msa0750650:intron | 15.0% |
| !! | AATTAAATTAATGTACCAAA+TGG | + | chr5_2:4077873-4077892 | None:intergenic | 15.0% |
| !!! | TAATTTAATTTCCAATTATG+AGG | - | chr5_2:4077883-4077902 | Msa0750650:intron | 15.0% |
| !! | ACTACAATTATATAATTGCA+GGG | + | chr5_2:4077975-4077994 | None:intergenic | 20.0% |
| !!! | GCTTTAGCTTAATTATAATA+TGG | - | chr5_2:4078112-4078131 | Msa0750650:CDS | 20.0% |
| !!! | AGTTTGTTGTCATAAATTTA+AGG | + | chr5_2:4078335-4078354 | None:intergenic | 20.0% |
| !! | ACTACAATTATATAATTGCA+GGG | + | chr5_2:4077975-4077994 | None:intergenic | 20.0% |
| !!! | GCTTTAGCTTAATTATAATA+TGG | - | chr5_2:4078112-4078131 | Msa0750650:CDS | 20.0% |
| !!! | AGTTTGTTGTCATAAATTTA+AGG | + | chr5_2:4078335-4078354 | None:intergenic | 20.0% |
| ! | GAGAAATTTATAATCTATGG+TGG | + | chr5_2:4077259-4077278 | None:intergenic | 25.0% |
| ! | GATTAAAACACATTGAGTTT+AGG | + | chr5_2:4077803-4077822 | None:intergenic | 25.0% |
| ! | TTTATTAATGATACAGCACA+TGG | + | chr5_2:4077843-4077862 | None:intergenic | 25.0% |
| ! | CACTACAATTATATAATTGC+AGG | + | chr5_2:4077976-4077995 | None:intergenic | 25.0% |
| ! | CTGCAATTATATAATTGTAG+TGG | - | chr5_2:4077974-4077993 | Msa0750650:intron | 25.0% |
| ! | TAAGGAAGCTTCATAATATT+TGG | + | chr5_2:4078317-4078336 | None:intergenic | 25.0% |
| ! | GAGAAATTTATAATCTATGG+TGG | + | chr5_2:4077259-4077278 | None:intergenic | 25.0% |
| ! | GATTAAAACACATTGAGTTT+AGG | + | chr5_2:4077803-4077822 | None:intergenic | 25.0% |
| ! | TTTATTAATGATACAGCACA+TGG | + | chr5_2:4077843-4077862 | None:intergenic | 25.0% |
| ! | CACTACAATTATATAATTGC+AGG | + | chr5_2:4077976-4077995 | None:intergenic | 25.0% |
| ! | CTGCAATTATATAATTGTAG+TGG | - | chr5_2:4077974-4077993 | Msa0750650:intron | 25.0% |
| ! | TAAGGAAGCTTCATAATATT+TGG | + | chr5_2:4078317-4078336 | None:intergenic | 25.0% |
| ACCATTCATAAAGCAAACAA+GGG | + | chr5_2:4077382-4077401 | None:intergenic | 30.0% | |
| AACCATTCATAAAGCAAACA+AGG | + | chr5_2:4077383-4077402 | None:intergenic | 30.0% | |
| ! | GTTTGCTTTATGAATGGTTT+TGG | - | chr5_2:4077384-4077403 | Msa0750650:intron | 30.0% |
| TGACGTAACATTAATCTACT+TGG | - | chr5_2:4078213-4078232 | Msa0750650:intron | 30.0% | |
| TAGAAGTTGTTAGGATTTCA+AGG | - | chr5_2:4078387-4078406 | Msa0750650:intron | 30.0% | |
| AGAAGTTGTTAGGATTTCAA+GGG | - | chr5_2:4078388-4078407 | Msa0750650:intron | 30.0% | |
| ACCATTCATAAAGCAAACAA+GGG | + | chr5_2:4077382-4077401 | None:intergenic | 30.0% | |
| AACCATTCATAAAGCAAACA+AGG | + | chr5_2:4077383-4077402 | None:intergenic | 30.0% | |
| ! | GTTTGCTTTATGAATGGTTT+TGG | - | chr5_2:4077384-4077403 | Msa0750650:intron | 30.0% |
| TGACGTAACATTAATCTACT+TGG | - | chr5_2:4078213-4078232 | Msa0750650:intron | 30.0% | |
| TAGAAGTTGTTAGGATTTCA+AGG | - | chr5_2:4078387-4078406 | Msa0750650:intron | 30.0% | |
| AGAAGTTGTTAGGATTTCAA+GGG | - | chr5_2:4078388-4078407 | Msa0750650:intron | 30.0% | |
| ! | ACCCTTGTTTGCTTTATGAA+TGG | - | chr5_2:4077378-4077397 | Msa0750650:intron | 35.0% |
| ! | TAGCCTCTGTTAACTGTTTT+GGG | - | chr5_2:4077421-4077440 | Msa0750650:intron | 35.0% |
| !!! | TGTCAATTGGGAGTTTTTTC+TGG | - | chr5_2:4077472-4077491 | Msa0750650:intron | 35.0% |
| AAAAGACAGCACAAAAACGT+AGG | + | chr5_2:4077652-4077671 | None:intergenic | 35.0% | |
| ! | CGTTTTTGTGCTGTCTTTTT+CGG | - | chr5_2:4077653-4077672 | Msa0750650:CDS | 35.0% |
| GATTCAAATAGCTAGGGAAT+TGG | - | chr5_2:4077707-4077726 | Msa0750650:intron | 35.0% | |
| ! | AAAGAGAATAAGAGTGCACT+GGG | + | chr5_2:4077762-4077781 | None:intergenic | 35.0% |
| ! | GTGTTTATCATTTTGCTGAC+AGG | - | chr5_2:4077996-4078015 | Msa0750650:intron | 35.0% |
| !! | ATGGAAATTCCACTTTTCGT+TGG | - | chr5_2:4078022-4078041 | Msa0750650:intron | 35.0% |
| !! | CTACTTGGCTTCTTACTTTT+AGG | - | chr5_2:4078228-4078247 | Msa0750650:intron | 35.0% |
| CTACAACTGCTCAGATAATA+TGG | - | chr5_2:4078359-4078378 | Msa0750650:intron | 35.0% | |
| !! | ATGGAGTTCTAGAAGTTGTT+AGG | - | chr5_2:4078378-4078397 | Msa0750650:intron | 35.0% |
| CAACTTGGTACATTTCAGAA+GGG | + | chr5_2:4078500-4078519 | None:intergenic | 35.0% | |
| ACAAAACTGTATCTTTGAGC+AGG | - | chr5_2:4078525-4078544 | Msa0750650:intron | 35.0% | |
| CAAAACTGTATCTTTGAGCA+GGG | - | chr5_2:4078526-4078545 | Msa0750650:intron | 35.0% | |
| ! | ACCCTTGTTTGCTTTATGAA+TGG | - | chr5_2:4077378-4077397 | Msa0750650:intron | 35.0% |
| ! | TAGCCTCTGTTAACTGTTTT+GGG | - | chr5_2:4077421-4077440 | Msa0750650:intron | 35.0% |
| !!! | TGTCAATTGGGAGTTTTTTC+TGG | - | chr5_2:4077472-4077491 | Msa0750650:intron | 35.0% |
| AAAAGACAGCACAAAAACGT+AGG | + | chr5_2:4077652-4077671 | None:intergenic | 35.0% | |
| ! | CGTTTTTGTGCTGTCTTTTT+CGG | - | chr5_2:4077653-4077672 | Msa0750650:CDS | 35.0% |
| GATTCAAATAGCTAGGGAAT+TGG | - | chr5_2:4077707-4077726 | Msa0750650:intron | 35.0% | |
| ! | AAAGAGAATAAGAGTGCACT+GGG | + | chr5_2:4077762-4077781 | None:intergenic | 35.0% |
| ! | GTGTTTATCATTTTGCTGAC+AGG | - | chr5_2:4077996-4078015 | Msa0750650:intron | 35.0% |
| !! | ATGGAAATTCCACTTTTCGT+TGG | - | chr5_2:4078022-4078041 | Msa0750650:intron | 35.0% |
| !! | CTACTTGGCTTCTTACTTTT+AGG | - | chr5_2:4078228-4078247 | Msa0750650:intron | 35.0% |
| CTACAACTGCTCAGATAATA+TGG | - | chr5_2:4078359-4078378 | Msa0750650:intron | 35.0% | |
| !! | ATGGAGTTCTAGAAGTTGTT+AGG | - | chr5_2:4078378-4078397 | Msa0750650:intron | 35.0% |
| CAACTTGGTACATTTCAGAA+GGG | + | chr5_2:4078500-4078519 | None:intergenic | 35.0% | |
| ACAAAACTGTATCTTTGAGC+AGG | - | chr5_2:4078525-4078544 | Msa0750650:intron | 35.0% | |
| CAAAACTGTATCTTTGAGCA+GGG | - | chr5_2:4078526-4078545 | Msa0750650:intron | 35.0% | |
| ! | TGAATCTAGAACAGAGCTGT+CGG | - | chr5_2:4077182-4077201 | Msa0750650:CDS | 40.0% |
| TAACAGAGGCTACATTCTCT+AGG | + | chr5_2:4077413-4077432 | None:intergenic | 40.0% | |
| ! | GTAGCCTCTGTTAACTGTTT+TGG | - | chr5_2:4077420-4077439 | Msa0750650:intron | 40.0% |
| AAGCCCAAAACAGTTAACAG+AGG | + | chr5_2:4077427-4077446 | None:intergenic | 40.0% | |
| AGAAAACCACGCCAGATAAA+CGG | + | chr5_2:4077450-4077469 | None:intergenic | 40.0% | |
| ! | GTGGTTTTCTGCTGTCAATT+GGG | - | chr5_2:4077460-4077479 | Msa0750650:intron | 40.0% |
| !!! | CAATTGGGAGTTTTTTCTGG+TGG | - | chr5_2:4077475-4077494 | Msa0750650:intron | 40.0% |
| !!! | TTTCGGTGTTTTGCTGTTCT+AGG | - | chr5_2:4077670-4077689 | Msa0750650:intron | 40.0% |
| AGGGTTGGATTCAAATAGCT+AGG | - | chr5_2:4077700-4077719 | Msa0750650:intron | 40.0% | |
| GGGTTGGATTCAAATAGCTA+GGG | - | chr5_2:4077701-4077720 | Msa0750650:intron | 40.0% | |
| AGCTAGGGAATTGGTAGATT+AGG | - | chr5_2:4077716-4077735 | Msa0750650:intron | 40.0% | |
| ! | CAAAGAGAATAAGAGTGCAC+TGG | + | chr5_2:4077763-4077782 | None:intergenic | 40.0% |
| AGAAAAGGCAGGTTTGAATC+TGG | - | chr5_2:4077919-4077938 | Msa0750650:intron | 40.0% | |
| TATAGTGCACCAACGAAAAG+TGG | + | chr5_2:4078034-4078053 | None:intergenic | 40.0% | |
| GTTGTTAGGATTTCAAGGGA+TGG | - | chr5_2:4078392-4078411 | Msa0750650:intron | 40.0% | |
| CCAACTTGGTACATTTCAGA+AGG | + | chr5_2:4078501-4078520 | None:intergenic | 40.0% | |
| !! | CCTTCTGAAATGTACCAAGT+TGG | - | chr5_2:4078498-4078517 | Msa0750650:intron | 40.0% |
| !! | ACAGTTTTGTGTAGCCAACT+TGG | + | chr5_2:4078515-4078534 | None:intergenic | 40.0% |
| ! | TGAATCTAGAACAGAGCTGT+CGG | - | chr5_2:4077182-4077201 | Msa0750650:CDS | 40.0% |
| TAACAGAGGCTACATTCTCT+AGG | + | chr5_2:4077413-4077432 | None:intergenic | 40.0% | |
| ! | GTAGCCTCTGTTAACTGTTT+TGG | - | chr5_2:4077420-4077439 | Msa0750650:intron | 40.0% |
| AAGCCCAAAACAGTTAACAG+AGG | + | chr5_2:4077427-4077446 | None:intergenic | 40.0% | |
| AGAAAACCACGCCAGATAAA+CGG | + | chr5_2:4077450-4077469 | None:intergenic | 40.0% | |
| ! | GTGGTTTTCTGCTGTCAATT+GGG | - | chr5_2:4077460-4077479 | Msa0750650:intron | 40.0% |
| !!! | CAATTGGGAGTTTTTTCTGG+TGG | - | chr5_2:4077475-4077494 | Msa0750650:intron | 40.0% |
| !!! | TTTCGGTGTTTTGCTGTTCT+AGG | - | chr5_2:4077670-4077689 | Msa0750650:intron | 40.0% |
| AGGGTTGGATTCAAATAGCT+AGG | - | chr5_2:4077700-4077719 | Msa0750650:intron | 40.0% | |
| GGGTTGGATTCAAATAGCTA+GGG | - | chr5_2:4077701-4077720 | Msa0750650:intron | 40.0% | |
| AGCTAGGGAATTGGTAGATT+AGG | - | chr5_2:4077716-4077735 | Msa0750650:intron | 40.0% | |
| ! | CAAAGAGAATAAGAGTGCAC+TGG | + | chr5_2:4077763-4077782 | None:intergenic | 40.0% |
| AGAAAAGGCAGGTTTGAATC+TGG | - | chr5_2:4077919-4077938 | Msa0750650:intron | 40.0% | |
| TATAGTGCACCAACGAAAAG+TGG | + | chr5_2:4078034-4078053 | None:intergenic | 40.0% | |
| GTTGTTAGGATTTCAAGGGA+TGG | - | chr5_2:4078392-4078411 | Msa0750650:intron | 40.0% | |
| CCAACTTGGTACATTTCAGA+AGG | + | chr5_2:4078501-4078520 | None:intergenic | 40.0% | |
| !! | CCTTCTGAAATGTACCAAGT+TGG | - | chr5_2:4078498-4078517 | Msa0750650:intron | 40.0% |
| !! | ACAGTTTTGTGTAGCCAACT+TGG | + | chr5_2:4078515-4078534 | None:intergenic | 40.0% |
| !! | GTTTTGGGCTTCCGTTTATC+TGG | - | chr5_2:4077436-4077455 | Msa0750650:intron | 45.0% |
| ! | CGTGGTTTTCTGCTGTCAAT+TGG | - | chr5_2:4077459-4077478 | Msa0750650:intron | 45.0% |
| !!! | GTGCAGGTTTTTGGTGGTTT+CGG | - | chr5_2:4077503-4077522 | Msa0750650:intron | 45.0% |
| !!! | GGTGTTTTGCTGTTCTAGGA+GGG | - | chr5_2:4077674-4077693 | Msa0750650:intron | 45.0% |
| !! | TTGCTGTTCTAGGAGGGAAA+AGG | - | chr5_2:4077680-4077699 | Msa0750650:intron | 45.0% |
| !! | TGCTGTTCTAGGAGGGAAAA+GGG | - | chr5_2:4077681-4077700 | Msa0750650:intron | 45.0% |
| CACTCTCGCTACCTCATAAT+TGG | + | chr5_2:4077897-4077916 | None:intergenic | 45.0% | |
| ! | TCATTTTGCTGACAGGAGCA+TGG | - | chr5_2:4078003-4078022 | Msa0750650:intron | 45.0% |
| GCACTATACTCACAGAAGAG+AGG | - | chr5_2:4078046-4078065 | Msa0750650:CDS | 45.0% | |
| ! | TACTCACAGAAGAGAGGTGT+TGG | - | chr5_2:4078052-4078071 | Msa0750650:CDS | 45.0% |
| !! | GAGGTGTTGGAACAAAGTTC+TGG | - | chr5_2:4078065-4078084 | Msa0750650:CDS | 45.0% |
| GCTATGCAGCGAATAAAGTG+AGG | + | chr5_2:4078295-4078314 | None:intergenic | 45.0% | |
| CAGTCTCAGAAAGCAGAATC+TGG | + | chr5_2:4078423-4078442 | None:intergenic | 45.0% | |
| !! | TTCTGAGACTGATGCATGTC+AGG | - | chr5_2:4078432-4078451 | Msa0750650:intron | 45.0% |
| ACTTTGCGAAACAGCGATGA+AGG | + | chr5_2:4078470-4078489 | None:intergenic | 45.0% | |
| !! | GTTTTGGGCTTCCGTTTATC+TGG | - | chr5_2:4077436-4077455 | Msa0750650:intron | 45.0% |
| ! | CGTGGTTTTCTGCTGTCAAT+TGG | - | chr5_2:4077459-4077478 | Msa0750650:intron | 45.0% |
| !!! | GTGCAGGTTTTTGGTGGTTT+CGG | - | chr5_2:4077503-4077522 | Msa0750650:intron | 45.0% |
| !!! | GGTGTTTTGCTGTTCTAGGA+GGG | - | chr5_2:4077674-4077693 | Msa0750650:intron | 45.0% |
| !! | TTGCTGTTCTAGGAGGGAAA+AGG | - | chr5_2:4077680-4077699 | Msa0750650:intron | 45.0% |
| !! | TGCTGTTCTAGGAGGGAAAA+GGG | - | chr5_2:4077681-4077700 | Msa0750650:intron | 45.0% |
| CACTCTCGCTACCTCATAAT+TGG | + | chr5_2:4077897-4077916 | None:intergenic | 45.0% | |
| ! | TCATTTTGCTGACAGGAGCA+TGG | - | chr5_2:4078003-4078022 | Msa0750650:intron | 45.0% |
| GCACTATACTCACAGAAGAG+AGG | - | chr5_2:4078046-4078065 | Msa0750650:CDS | 45.0% | |
| ! | TACTCACAGAAGAGAGGTGT+TGG | - | chr5_2:4078052-4078071 | Msa0750650:CDS | 45.0% |
| !! | GAGGTGTTGGAACAAAGTTC+TGG | - | chr5_2:4078065-4078084 | Msa0750650:CDS | 45.0% |
| GCTATGCAGCGAATAAAGTG+AGG | + | chr5_2:4078295-4078314 | None:intergenic | 45.0% | |
| CAGTCTCAGAAAGCAGAATC+TGG | + | chr5_2:4078423-4078442 | None:intergenic | 45.0% | |
| !! | TTCTGAGACTGATGCATGTC+AGG | - | chr5_2:4078432-4078451 | Msa0750650:intron | 45.0% |
| ACTTTGCGAAACAGCGATGA+AGG | + | chr5_2:4078470-4078489 | None:intergenic | 45.0% | |
| !!! | TTATATATATTTTATATCAT+TGG | - | chr5_2:4077305-4077324 | Msa0750650:intron | 5.0% |
| !!! | TTATATATATTTTATATCAT+TGG | - | chr5_2:4077305-4077324 | Msa0750650:intron | 5.0% |
| CTAAACCCTGCTACAGAACG+CGG | + | chr5_2:4077338-4077357 | None:intergenic | 50.0% | |
| TCTCTTGGAAGTTCAGCTGC+TGG | - | chr5_2:4077539-4077558 | Msa0750650:intron | 50.0% | |
| !!! | GGAAGTTCAGCTGCTGGTTT+TGG | - | chr5_2:4077545-4077564 | Msa0750650:intron | 50.0% |
| ! | TGTTTTCTGCTGCTGTCAGC+TGG | - | chr5_2:4077612-4077631 | Msa0750650:intron | 50.0% |
| ! | GTTTTCTGCTGCTGTCAGCT+GGG | - | chr5_2:4077613-4077632 | Msa0750650:intron | 50.0% |
| !!! | CGGTGTTTTGCTGTTCTAGG+AGG | - | chr5_2:4077673-4077692 | Msa0750650:intron | 50.0% |
| !! | GTTCTAGGAGGGAAAAGGGT+TGG | - | chr5_2:4077685-4077704 | Msa0750650:intron | 50.0% |
| GGTAGCGAGAGTGAGAGAAA+AGG | - | chr5_2:4077904-4077923 | Msa0750650:intron | 50.0% | |
| !! | ACAGCGATGAAGGTGCTTGA+TGG | + | chr5_2:4078460-4078479 | None:intergenic | 50.0% |
| CTAAACCCTGCTACAGAACG+CGG | + | chr5_2:4077338-4077357 | None:intergenic | 50.0% | |
| TCTCTTGGAAGTTCAGCTGC+TGG | - | chr5_2:4077539-4077558 | Msa0750650:intron | 50.0% | |
| !!! | GGAAGTTCAGCTGCTGGTTT+TGG | - | chr5_2:4077545-4077564 | Msa0750650:intron | 50.0% |
| ! | TGTTTTCTGCTGCTGTCAGC+TGG | - | chr5_2:4077612-4077631 | Msa0750650:intron | 50.0% |
| ! | GTTTTCTGCTGCTGTCAGCT+GGG | - | chr5_2:4077613-4077632 | Msa0750650:intron | 50.0% |
| !!! | CGGTGTTTTGCTGTTCTAGG+AGG | - | chr5_2:4077673-4077692 | Msa0750650:intron | 50.0% |
| !! | GTTCTAGGAGGGAAAAGGGT+TGG | - | chr5_2:4077685-4077704 | Msa0750650:intron | 50.0% |
| GGTAGCGAGAGTGAGAGAAA+AGG | - | chr5_2:4077904-4077923 | Msa0750650:intron | 50.0% | |
| !! | ACAGCGATGAAGGTGCTTGA+TGG | + | chr5_2:4078460-4078479 | None:intergenic | 50.0% |
| TGGATTCCGCGTTCTGTAGC+AGG | - | chr5_2:4077329-4077348 | Msa0750650:intron | 55.0% | |
| GGATTCCGCGTTCTGTAGCA+GGG | - | chr5_2:4077330-4077349 | Msa0750650:intron | 55.0% | |
| !! | TTTTCTGGTGGCTGCTGTGC+AGG | - | chr5_2:4077487-4077506 | Msa0750650:intron | 55.0% |
| ! | GTGGCTGCTGTGCAGGTTTT+TGG | - | chr5_2:4077494-4077513 | Msa0750650:intron | 55.0% |
| !! | GCTGCTGTGCAGGTTTTTGG+TGG | - | chr5_2:4077497-4077516 | Msa0750650:intron | 55.0% |
| GGCTGCTGTCATGGTTCTCT+TGG | - | chr5_2:4077524-4077543 | Msa0750650:intron | 55.0% | |
| !!! | TGCTGGTTTTGGTTGCCGAC+TGG | - | chr5_2:4077556-4077575 | Msa0750650:intron | 55.0% |
| ! | GTTGCCGACTGGCATCTAGA+GGG | - | chr5_2:4077567-4077586 | Msa0750650:intron | 55.0% |
| GCGAGAGTGAGAGAAAAGGC+AGG | - | chr5_2:4077908-4077927 | Msa0750650:intron | 55.0% | |
| TGGATTCCGCGTTCTGTAGC+AGG | - | chr5_2:4077329-4077348 | Msa0750650:intron | 55.0% | |
| GGATTCCGCGTTCTGTAGCA+GGG | - | chr5_2:4077330-4077349 | Msa0750650:intron | 55.0% | |
| !! | TTTTCTGGTGGCTGCTGTGC+AGG | - | chr5_2:4077487-4077506 | Msa0750650:intron | 55.0% |
| ! | GTGGCTGCTGTGCAGGTTTT+TGG | - | chr5_2:4077494-4077513 | Msa0750650:intron | 55.0% |
| !! | GCTGCTGTGCAGGTTTTTGG+TGG | - | chr5_2:4077497-4077516 | Msa0750650:intron | 55.0% |
| GGCTGCTGTCATGGTTCTCT+TGG | - | chr5_2:4077524-4077543 | Msa0750650:intron | 55.0% | |
| !!! | TGCTGGTTTTGGTTGCCGAC+TGG | - | chr5_2:4077556-4077575 | Msa0750650:intron | 55.0% |
| ! | GTTGCCGACTGGCATCTAGA+GGG | - | chr5_2:4077567-4077586 | Msa0750650:intron | 55.0% |
| GCGAGAGTGAGAGAAAAGGC+AGG | - | chr5_2:4077908-4077927 | Msa0750650:intron | 55.0% | |
| GGGCTTCCGTTTATCTGGCG+TGG | - | chr5_2:4077441-4077460 | Msa0750650:intron | 60.0% | |
| GGTGGTTTCGGCTGCTGTCA+TGG | - | chr5_2:4077515-4077534 | Msa0750650:intron | 60.0% | |
| ! | GGTTGCCGACTGGCATCTAG+AGG | - | chr5_2:4077566-4077585 | Msa0750650:intron | 60.0% |
| CCGACCCTCTAGATGCCAGT+CGG | + | chr5_2:4077574-4077593 | None:intergenic | 60.0% | |
| CCGACTGGCATCTAGAGGGT+CGG | - | chr5_2:4077571-4077590 | Msa0750650:intron | 60.0% | |
| ACTGGCATCTAGAGGGTCGG+CGG | - | chr5_2:4077574-4077593 | Msa0750650:intron | 60.0% | |
| GGGCTTCCGTTTATCTGGCG+TGG | - | chr5_2:4077441-4077460 | Msa0750650:intron | 60.0% | |
| GGTGGTTTCGGCTGCTGTCA+TGG | - | chr5_2:4077515-4077534 | Msa0750650:intron | 60.0% | |
| ! | GGTTGCCGACTGGCATCTAG+AGG | - | chr5_2:4077566-4077585 | Msa0750650:intron | 60.0% |
| CCGACCCTCTAGATGCCAGT+CGG | + | chr5_2:4077574-4077593 | None:intergenic | 60.0% | |
| CCGACTGGCATCTAGAGGGT+CGG | - | chr5_2:4077571-4077590 | Msa0750650:intron | 60.0% | |
| ACTGGCATCTAGAGGGTCGG+CGG | - | chr5_2:4077574-4077593 | Msa0750650:intron | 60.0% | |
| GGTCGGCGGTTGCAGCTGTT+TGG | - | chr5_2:4077588-4077607 | Msa0750650:intron | 65.0% | |
| GGTCGGCGGTTGCAGCTGTT+TGG | - | chr5_2:4077588-4077607 | Msa0750650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 4077152 | 4078549 | 4077152 | ID=Msa0750650;Name=Msa0750650 |
| chr5_2 | mRNA | 4077152 | 4078549 | 4077152 | ID=Msa0750650-mRNA-1;Parent=Msa0750650;Name=Msa0750650-mRNA-1;_AED=0.42;_eAED=0.64;_QI=0|0|0|1|0|0.16|6|0|143 |
| chr5_2 | exon | 4078546 | 4078549 | 4078546 | ID=Msa0750650-mRNA-1:exon:1592;Parent=Msa0750650-mRNA-1 |
| chr5_2 | exon | 4078498 | 4078505 | 4078498 | ID=Msa0750650-mRNA-1:exon:1591;Parent=Msa0750650-mRNA-1 |
| chr5_2 | exon | 4078027 | 4078192 | 4078027 | ID=Msa0750650-mRNA-1:exon:1590;Parent=Msa0750650-mRNA-1 |
| chr5_2 | exon | 4077761 | 4077792 | 4077761 | ID=Msa0750650-mRNA-1:exon:1589;Parent=Msa0750650-mRNA-1 |
| chr5_2 | exon | 4077615 | 4077683 | 4077615 | ID=Msa0750650-mRNA-1:exon:1588;Parent=Msa0750650-mRNA-1 |
| chr5_2 | exon | 4077152 | 4077301 | 4077152 | ID=Msa0750650-mRNA-1:exon:1587;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4078546 | 4078549 | 4078546 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4078498 | 4078505 | 4078498 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4078027 | 4078192 | 4078027 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4077761 | 4077792 | 4077761 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4077615 | 4077683 | 4077615 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| chr5_2 | CDS | 4077152 | 4077301 | 4077152 | ID=Msa0750650-mRNA-1:cds;Parent=Msa0750650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
