Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200800 | sp|P40620|HMGL_VICFA | 73.846 | 130 | 28 | 2 | 3 | 126 | 5 | 134 | 6.37e-58 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200800 | B7FN80 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 3.43e-94 | 277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1200800 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1200800 | Msa1294070 | 0.835379 | 1.736707e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200800 | MtrunA17_Chr8g0370431 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 6.61e-98 | 277 |
| Msa1200800 | MtrunA17_Chr5g0407011 | 67.969 | 128 | 38 | 2 | 1 | 126 | 1 | 127 | 5.65e-54 | 166 |
| Msa1200800 | MtrunA17_Chr3g0143991 | 64.286 | 112 | 34 | 3 | 3 | 108 | 5 | 116 | 2.86e-37 | 124 |
| Msa1200800 | MtrunA17_Chr7g0242251 | 60.606 | 99 | 38 | 1 | 33 | 130 | 47 | 145 | 1.90e-30 | 107 |
| Msa1200800 | MtrunA17_Chr1g0212341 | 44.340 | 106 | 50 | 1 | 33 | 138 | 98 | 194 | 5.37e-24 | 92.4 |
| Msa1200800 | MtrunA17_Chr4g0052011 | 50.000 | 78 | 39 | 0 | 33 | 110 | 60 | 137 | 2.00e-22 | 86.7 |
| Msa1200800 | MtrunA17_Chr8g0387931 | 45.783 | 83 | 39 | 2 | 33 | 115 | 262 | 338 | 1.28e-12 | 63.9 |
| Msa1200800 | MtrunA17_Chr1g0155251 | 43.023 | 86 | 48 | 1 | 22 | 107 | 543 | 627 | 7.06e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200800 | AT1G20693.2 | 61.871 | 139 | 40 | 4 | 3 | 138 | 14 | 142 | 2.70e-44 | 142 |
| Msa1200800 | AT2G17560.2 | 56.618 | 136 | 53 | 2 | 5 | 138 | 7 | 138 | 1.18e-42 | 138 |
| Msa1200800 | AT2G17560.1 | 56.618 | 136 | 53 | 2 | 5 | 138 | 7 | 138 | 1.18e-42 | 138 |
| Msa1200800 | AT1G20693.3 | 61.600 | 125 | 37 | 3 | 3 | 126 | 14 | 128 | 2.35e-40 | 132 |
| Msa1200800 | AT1G20693.1 | 61.600 | 125 | 37 | 3 | 3 | 126 | 14 | 128 | 2.42e-40 | 132 |
| Msa1200800 | AT2G17560.3 | 56.296 | 135 | 50 | 3 | 5 | 137 | 7 | 134 | 2.77e-40 | 132 |
| Msa1200800 | AT1G20696.1 | 68.932 | 103 | 31 | 1 | 25 | 126 | 23 | 125 | 1.05e-39 | 130 |
| Msa1200800 | AT3G51880.2 | 64.423 | 104 | 33 | 2 | 28 | 130 | 44 | 144 | 2.84e-37 | 125 |
| Msa1200800 | AT3G51880.5 | 64.423 | 104 | 33 | 2 | 28 | 130 | 44 | 144 | 3.60e-37 | 125 |
| Msa1200800 | AT3G51880.1 | 64.423 | 104 | 33 | 2 | 28 | 130 | 44 | 144 | 3.60e-37 | 125 |
| Msa1200800 | AT3G51880.3 | 64.423 | 104 | 33 | 2 | 28 | 130 | 44 | 144 | 3.60e-37 | 125 |
| Msa1200800 | AT1G20696.2 | 70.588 | 85 | 25 | 0 | 25 | 109 | 23 | 107 | 5.24e-35 | 119 |
| Msa1200800 | AT1G20696.5 | 70.588 | 85 | 25 | 0 | 25 | 109 | 23 | 107 | 7.56e-35 | 118 |
| Msa1200800 | AT3G51880.4 | 63.000 | 100 | 33 | 2 | 28 | 126 | 44 | 140 | 1.62e-34 | 118 |
| Msa1200800 | AT4G35570.1 | 44.444 | 117 | 60 | 1 | 3 | 119 | 5 | 116 | 1.35e-32 | 112 |
| Msa1200800 | AT4G35570.2 | 44.444 | 117 | 60 | 1 | 3 | 119 | 5 | 116 | 1.35e-32 | 112 |
| Msa1200800 | AT1G20696.3 | 61.798 | 89 | 33 | 1 | 45 | 132 | 1 | 89 | 2.02e-27 | 98.2 |
| Msa1200800 | AT1G20696.4 | 61.446 | 83 | 31 | 1 | 45 | 126 | 1 | 83 | 5.65e-25 | 92.0 |
| Msa1200800 | AT2G34450.4 | 43.820 | 89 | 49 | 1 | 37 | 124 | 63 | 151 | 2.56e-20 | 81.6 |
| Msa1200800 | AT2G34450.3 | 43.820 | 89 | 49 | 1 | 37 | 124 | 63 | 151 | 2.56e-20 | 81.6 |
| Msa1200800 | AT2G34450.1 | 43.820 | 89 | 49 | 1 | 37 | 124 | 63 | 151 | 2.56e-20 | 81.6 |
| Msa1200800 | AT2G34450.2 | 43.333 | 90 | 49 | 2 | 37 | 124 | 63 | 152 | 5.90e-19 | 78.2 |
| Msa1200800 | AT5G23420.1 | 50.000 | 72 | 33 | 2 | 28 | 98 | 106 | 175 | 2.85e-15 | 70.5 |
| Msa1200800 | AT4G11080.1 | 42.391 | 92 | 47 | 2 | 33 | 124 | 242 | 327 | 2.32e-11 | 60.5 |
| Msa1200800 | AT4G23800.1 | 42.308 | 78 | 40 | 2 | 33 | 108 | 375 | 449 | 3.23e-11 | 60.1 |
| Msa1200800 | AT4G23800.1 | 44.000 | 75 | 39 | 1 | 33 | 107 | 251 | 322 | 4.24e-11 | 59.7 |
| Msa1200800 | AT4G23800.2 | 42.308 | 78 | 40 | 2 | 33 | 108 | 369 | 443 | 3.35e-11 | 60.1 |
| Msa1200800 | AT4G23800.2 | 44.000 | 75 | 39 | 1 | 33 | 107 | 251 | 322 | 4.39e-11 | 59.7 |
Find 56 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTTGGCTTGTT+AGG | 0.235866 | 8_1:+53747996 | None:intergenic |
| GATACTGAACCGTACTTTAG+AGG | 0.264950 | 8_1:+53746934 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+TGG | 0.290758 | 8_1:+53747987 | None:intergenic |
| GTTGCGTTATTGTGAGATTT+TGG | 0.311854 | 8_1:+53748325 | None:intergenic |
| CTTATACTGTTCTCTAAAAT+CGG | 0.321982 | 8_1:+53747834 | None:intergenic |
| ATTCACCAGTTTCTTGTTGT+AGG | 0.325921 | 8_1:+53747406 | None:intergenic |
| ACCACCACATGATGAAGTTT+AGG | 0.333939 | 8_1:-53747064 | Msa1200800:three_prime_UTR |
| GCGGCAACGGATTTGTTGTT+AGG | 0.341320 | 8_1:+53747802 | None:intergenic |
| TTACCGGTTATCAGCGGGTT+TGG | 0.344714 | 8_1:+53748209 | None:intergenic |
| TTGGAATCAGCTTTAACTTT+CGG | 0.360829 | 8_1:+53748228 | None:intergenic |
| GGGTAGGGAGTGAAGGGTAT+AGG | 0.361659 | 8_1:+53748372 | None:intergenic |
| AGCTTGAAGCGCAAAGGTGC+TGG | 0.381485 | 8_1:-53748056 | Msa1200800:CDS |
| CCACCACATGATGAAGTTTA+GGG | 0.386914 | 8_1:-53747063 | Msa1200800:three_prime_UTR |
| AGTTATTTGATTGGTTGAAA+TGG | 0.397936 | 8_1:+53748492 | None:intergenic |
| GAACGAGAGAGGGGATAAGA+AGG | 0.424761 | 8_1:+53748351 | None:intergenic |
| CGTTTCAATTCTGTTCTGTT+CGG | 0.436324 | 8_1:-53746874 | Msa1200800:three_prime_UTR |
| ATTCCAAACCCGCTGATAAC+CGG | 0.438213 | 8_1:-53748212 | Msa1200800:intron |
| TCGTTTATTGTCTTTCATAA+CGG | 0.442522 | 8_1:-53746830 | None:intergenic |
| ACAAGCCTACAACAAGAAAC+TGG | 0.447828 | 8_1:-53747411 | Msa1200800:intron |
| TTTAACCTTGTAGGAGGATG+AGG | 0.448986 | 8_1:-53747130 | Msa1200800:intron |
| AAGCGCAAAGGTGCTGGAGC+TGG | 0.461656 | 8_1:-53748050 | Msa1200800:CDS |
| TTCAATGCCCTAGCAGCATA+AGG | 0.463633 | 8_1:+53747461 | None:intergenic |
| ATAAGAAGGGTAGGGAGTGA+AGG | 0.464153 | 8_1:+53748365 | None:intergenic |
| AGAGAGGGGATAAGAAGGGT+AGG | 0.478048 | 8_1:+53748356 | None:intergenic |
| TTCATCCTCATCATTGACTT+CGG | 0.480014 | 8_1:+53747247 | None:intergenic |
| TCCGTGTGAAGTTATTTGAT+TGG | 0.481394 | 8_1:+53748483 | None:intergenic |
| GCGATTTACCGGTTATCAGC+GGG | 0.487221 | 8_1:+53748204 | None:intergenic |
| AAAGGAGCGAGTTGCTGAAT+CGG | 0.487717 | 8_1:+53748265 | None:intergenic |
| CCCTAAACTTCATCATGTGG+TGG | 0.495261 | 8_1:+53747063 | None:intergenic |
| GAGATTTCTTACAGCGGCAA+CGG | 0.506191 | 8_1:+53747789 | None:intergenic |
| CAAGGCTCCTTATGCTGCTA+GGG | 0.507356 | 8_1:-53747468 | Msa1200800:CDS |
| ACAAGGCTCCTTATGCTGCT+AGG | 0.511412 | 8_1:-53747469 | Msa1200800:CDS |
| ACAATAAACGAAACAAAACT+TGG | 0.515866 | 8_1:+53746842 | None:intergenic |
| GAGAGGGGATAAGAAGGGTA+GGG | 0.528146 | 8_1:+53748357 | None:intergenic |
| TAAGAAGGGTAGGGAGTGAA+GGG | 0.533744 | 8_1:+53748366 | None:intergenic |
| GAAAAGCTTGCGGTGAAGCA+TGG | 0.538505 | 8_1:-53747648 | Msa1200800:CDS |
| AACATTGACTTTAAGTACAC+AGG | 0.550744 | 8_1:+53746903 | None:intergenic |
| GTGAAGAATCCTCTAAAGTA+CGG | 0.552251 | 8_1:-53746943 | Msa1200800:three_prime_UTR |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 8_1:+53747978 | None:intergenic |
| ATCAGCTTTAACTTTCGGCA+TGG | 0.563633 | 8_1:+53748233 | None:intergenic |
| GAGGGAAAAGACGAGGAAGA+TGG | 0.570227 | 8_1:-53747287 | Msa1200800:CDS |
| TTTCCCTAAACTTCATCATG+TGG | 0.574768 | 8_1:+53747060 | None:intergenic |
| ACAGACGAAGAAAGCAGCGA+AGG | 0.587729 | 8_1:-53748021 | Msa1200800:CDS |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 8_1:+53747975 | None:intergenic |
| CAATGATGAGGATGAAGATG+AGG | 0.593124 | 8_1:-53747240 | Msa1200800:intron |
| AACGAGAGAGGGGATAAGAA+GGG | 0.608282 | 8_1:+53748352 | None:intergenic |
| AATTAGGTCGGAAAAGCTTG+CGG | 0.611496 | 8_1:-53747658 | Msa1200800:intron |
| CTTCACACGGATCGATGACG+TGG | 0.612835 | 8_1:-53748471 | Msa1200800:five_prime_UTR |
| ACCAATCAAATAACTTCACA+CGG | 0.617661 | 8_1:-53748484 | Msa1200800:five_prime_UTR |
| ATTGAAGTTTAGGGTTTACG+CGG | 0.619581 | 8_1:+53748430 | None:intergenic |
| GCAAAGGTGCTGGAGCTGGA+AGG | 0.622916 | 8_1:-53748046 | Msa1200800:CDS |
| AGCGATTTACCGGTTATCAG+CGG | 0.628276 | 8_1:+53748203 | None:intergenic |
| TTGAAGTTTAGGGTTTACGC+GGG | 0.641750 | 8_1:+53748431 | None:intergenic |
| AAAATCCGAAGTCAATGATG+AGG | 0.642367 | 8_1:-53747252 | Msa1200800:CDS |
| TTATTAGGAGGGAAAAGACG+AGG | 0.645171 | 8_1:-53747294 | Msa1200800:intron |
| ATTGACTTTAAGTACACAGG+AGG | 0.654407 | 8_1:+53746906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATATTAAAAAAAT+TGG | + | chr8_1:53747192-53747211 | None:intergenic | 0.0% |
| !!! | TTTTTATTTATTTTATTTTT+TGG | - | chr8_1:53747600-53747619 | Msa1200800:intron | 0.0% |
| !! | TAAAAAAATATTAAAAAAAT+TGG | + | chr8_1:53747192-53747211 | None:intergenic | 0.0% |
| !!! | TTTTTATTTATTTTATTTTT+TGG | - | chr8_1:53747600-53747619 | Msa1200800:intron | 0.0% |
| !!! | TTAATTTTAATTGATGATTT+AGG | - | chr8_1:53747487-53747506 | Msa1200800:intron | 10.0% |
| !!! | TAATTTTTCGAAAATTAATT+AGG | - | chr8_1:53747671-53747690 | Msa1200800:intron | 10.0% |
| !!! | TTAATTTTAATTGATGATTT+AGG | - | chr8_1:53747487-53747506 | Msa1200800:intron | 10.0% |
| !!! | TAATTTTTCGAAAATTAATT+AGG | - | chr8_1:53747671-53747690 | Msa1200800:intron | 10.0% |
| !!! | ATTTTTTGGATTATAATTTG+TGG | - | chr8_1:53747614-53747633 | Msa1200800:intron | 15.0% |
| !!! | TTTTTTTTGTTAACTTTCAT+CGG | - | chr8_1:53747761-53747780 | Msa1200800:intron | 15.0% |
| !!! | TTCATTCATATTAGTAATTT+TGG | - | chr8_1:53747963-53747982 | Msa1200800:intron | 15.0% |
| !!! | TAACTTTTTGTTGATTTATT+AGG | - | chr8_1:53748036-53748055 | Msa1200800:CDS | 15.0% |
| !! | ATGATAATTGAATAATTGAA+TGG | - | chr8_1:53748174-53748193 | Msa1200800:intron | 15.0% |
| !!! | GAAAAAAATATGTTTTGTTT+AGG | - | chr8_1:53748316-53748335 | Msa1200800:five_prime_UTR | 15.0% |
| !!! | ATTTTTTGGATTATAATTTG+TGG | - | chr8_1:53747614-53747633 | Msa1200800:intron | 15.0% |
| !!! | TTTTTTTTGTTAACTTTCAT+CGG | - | chr8_1:53747761-53747780 | Msa1200800:intron | 15.0% |
| !!! | TTCATTCATATTAGTAATTT+TGG | - | chr8_1:53747963-53747982 | Msa1200800:intron | 15.0% |
| !!! | TAACTTTTTGTTGATTTATT+AGG | - | chr8_1:53748036-53748055 | Msa1200800:CDS | 15.0% |
| !! | ATGATAATTGAATAATTGAA+TGG | - | chr8_1:53748174-53748193 | Msa1200800:intron | 15.0% |
| !!! | GAAAAAAATATGTTTTGTTT+AGG | - | chr8_1:53748316-53748335 | Msa1200800:five_prime_UTR | 15.0% |
| !! | GAATGAAAAATTGAAGTTTA+GGG | + | chr8_1:53746927-53746946 | None:intergenic | 20.0% |
| !! | TGAATGAAAAATTGAAGTTT+AGG | + | chr8_1:53746928-53746947 | None:intergenic | 20.0% |
| !!! | TTTCAGATTTGAATCTTTTT+TGG | - | chr8_1:53747420-53747439 | Msa1200800:CDS | 20.0% |
| !!! | TGATTTGTTCGTTTTTTTAA+CGG | - | chr8_1:53747460-53747479 | Msa1200800:CDS | 20.0% |
| !!! | TAATTTGTGGATTTTATTGT+CGG | - | chr8_1:53747627-53747646 | Msa1200800:intron | 20.0% |
| !!! | TTTTCGAAAATTAATTAGGT+CGG | - | chr8_1:53747675-53747694 | Msa1200800:intron | 20.0% |
| !!! | TTTTTGTTGATTTATTAGGA+GGG | - | chr8_1:53748040-53748059 | Msa1200800:CDS | 20.0% |
| !!! | AGTTTATTTTTTAACCTTGT+AGG | - | chr8_1:53748206-53748225 | Msa1200800:intron | 20.0% |
| !!! | AATATGTTTTGTTTAGGTTA+TGG | - | chr8_1:53748322-53748341 | Msa1200800:five_prime_UTR | 20.0% |
| !! | GAATGAAAAATTGAAGTTTA+GGG | + | chr8_1:53746927-53746946 | None:intergenic | 20.0% |
| !! | TGAATGAAAAATTGAAGTTT+AGG | + | chr8_1:53746928-53746947 | None:intergenic | 20.0% |
| !!! | TTTCAGATTTGAATCTTTTT+TGG | - | chr8_1:53747420-53747439 | Msa1200800:CDS | 20.0% |
| !!! | TGATTTGTTCGTTTTTTTAA+CGG | - | chr8_1:53747460-53747479 | Msa1200800:CDS | 20.0% |
| !!! | TAATTTGTGGATTTTATTGT+CGG | - | chr8_1:53747627-53747646 | Msa1200800:intron | 20.0% |
| !!! | TTTTCGAAAATTAATTAGGT+CGG | - | chr8_1:53747675-53747694 | Msa1200800:intron | 20.0% |
| !!! | TTTTTGTTGATTTATTAGGA+GGG | - | chr8_1:53748040-53748059 | Msa1200800:CDS | 20.0% |
| !!! | AGTTTATTTTTTAACCTTGT+AGG | - | chr8_1:53748206-53748225 | Msa1200800:intron | 20.0% |
| !!! | AATATGTTTTGTTTAGGTTA+TGG | - | chr8_1:53748322-53748341 | Msa1200800:five_prime_UTR | 20.0% |
| !! | AGTTATTTGATTGGTTGAAA+TGG | + | chr8_1:53746856-53746875 | None:intergenic | 25.0% |
| !!! | CTTATACTGTTCTCTAAAAT+CGG | + | chr8_1:53747514-53747533 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTGATTTATTAGG+AGG | - | chr8_1:53748039-53748058 | Msa1200800:CDS | 25.0% |
| !!! | TTATTTTTTAACCTTGTAGG+AGG | - | chr8_1:53748209-53748228 | Msa1200800:intron | 25.0% |
| ! | ACAATAAACGAAACAAAACT+TGG | + | chr8_1:53748506-53748525 | None:intergenic | 25.0% |
| !! | AGTTATTTGATTGGTTGAAA+TGG | + | chr8_1:53746856-53746875 | None:intergenic | 25.0% |
| !!! | CTTATACTGTTCTCTAAAAT+CGG | + | chr8_1:53747514-53747533 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTGATTTATTAGG+AGG | - | chr8_1:53748039-53748058 | Msa1200800:CDS | 25.0% |
| !!! | TTATTTTTTAACCTTGTAGG+AGG | - | chr8_1:53748209-53748228 | Msa1200800:intron | 25.0% |
| ! | ACAATAAACGAAACAAAACT+TGG | + | chr8_1:53748506-53748525 | None:intergenic | 25.0% |
| ACCAATCAAATAACTTCACA+CGG | - | chr8_1:53746861-53746880 | Msa1200800:three_prime_UTR | 30.0% | |
| AGAGAAAACGCAAAGAAAAA+AGG | + | chr8_1:53746953-53746972 | None:intergenic | 30.0% | |
| ! | TTGGAATCAGCTTTAACTTT+CGG | + | chr8_1:53747120-53747139 | None:intergenic | 30.0% |
| TTGGAGAAGAAAAAATCGAA+CGG | + | chr8_1:53747173-53747192 | None:intergenic | 30.0% | |
| !!! | GTACTGTGATTTTGATTTTC+AGG | - | chr8_1:53747853-53747872 | Msa1200800:intron | 30.0% |
| !!! | TGATTTTGATTTTCAGGACA+AGG | - | chr8_1:53747859-53747878 | Msa1200800:intron | 30.0% |
| GAAGTTTAGGGAAAAATTGT+TGG | - | chr8_1:53748294-53748313 | Msa1200800:five_prime_UTR | 30.0% | |
| !! | AACATTGACTTTAAGTACAC+AGG | + | chr8_1:53748445-53748464 | None:intergenic | 30.0% |
| ACCAATCAAATAACTTCACA+CGG | - | chr8_1:53746861-53746880 | Msa1200800:three_prime_UTR | 30.0% | |
| AGAGAAAACGCAAAGAAAAA+AGG | + | chr8_1:53746953-53746972 | None:intergenic | 30.0% | |
| ! | TTGGAATCAGCTTTAACTTT+CGG | + | chr8_1:53747120-53747139 | None:intergenic | 30.0% |
| TTGGAGAAGAAAAAATCGAA+CGG | + | chr8_1:53747173-53747192 | None:intergenic | 30.0% | |
| !!! | GTACTGTGATTTTGATTTTC+AGG | - | chr8_1:53747853-53747872 | Msa1200800:intron | 30.0% |
| !!! | TGATTTTGATTTTCAGGACA+AGG | - | chr8_1:53747859-53747878 | Msa1200800:intron | 30.0% |
| GAAGTTTAGGGAAAAATTGT+TGG | - | chr8_1:53748294-53748313 | Msa1200800:five_prime_UTR | 30.0% | |
| !! | AACATTGACTTTAAGTACAC+AGG | + | chr8_1:53748445-53748464 | None:intergenic | 30.0% |
| TCCGTGTGAAGTTATTTGAT+TGG | + | chr8_1:53746865-53746884 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTTAGGGTTTACG+CGG | + | chr8_1:53746918-53746937 | None:intergenic | 35.0% |
| ! | GTTGCGTTATTGTGAGATTT+TGG | + | chr8_1:53747023-53747042 | None:intergenic | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr8_1:53747373-53747392 | None:intergenic | 35.0% |
| GTAAACGAGATTTCTTACAG+CGG | + | chr8_1:53747565-53747584 | None:intergenic | 35.0% | |
| ! | ATTCACCAGTTTCTTGTTGT+AGG | + | chr8_1:53747942-53747961 | None:intergenic | 35.0% |
| AAAATCCGAAGTCAATGATG+AGG | - | chr8_1:53748093-53748112 | Msa1200800:intron | 35.0% | |
| !! | TTCATCCTCATCATTGACTT+CGG | + | chr8_1:53748101-53748120 | None:intergenic | 35.0% |
| TTTCCCTAAACTTCATCATG+TGG | + | chr8_1:53748288-53748307 | None:intergenic | 35.0% | |
| !! | GTGAAGAATCCTCTAAAGTA+CGG | - | chr8_1:53748402-53748421 | Msa1200800:five_prime_UTR | 35.0% |
| ! | ATTGACTTTAAGTACACAGG+AGG | + | chr8_1:53748442-53748461 | None:intergenic | 35.0% |
| CGTTTCAATTCTGTTCTGTT+CGG | - | chr8_1:53748471-53748490 | Msa1200800:five_prime_UTR | 35.0% | |
| TCCGTGTGAAGTTATTTGAT+TGG | + | chr8_1:53746865-53746884 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTTAGGGTTTACG+CGG | + | chr8_1:53746918-53746937 | None:intergenic | 35.0% |
| ! | GTTGCGTTATTGTGAGATTT+TGG | + | chr8_1:53747023-53747042 | None:intergenic | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | + | chr8_1:53747373-53747392 | None:intergenic | 35.0% |
| GTAAACGAGATTTCTTACAG+CGG | + | chr8_1:53747565-53747584 | None:intergenic | 35.0% | |
| ! | ATTCACCAGTTTCTTGTTGT+AGG | + | chr8_1:53747942-53747961 | None:intergenic | 35.0% |
| AAAATCCGAAGTCAATGATG+AGG | - | chr8_1:53748093-53748112 | Msa1200800:intron | 35.0% | |
| !! | TTCATCCTCATCATTGACTT+CGG | + | chr8_1:53748101-53748120 | None:intergenic | 35.0% |
| TTTCCCTAAACTTCATCATG+TGG | + | chr8_1:53748288-53748307 | None:intergenic | 35.0% | |
| !! | GTGAAGAATCCTCTAAAGTA+CGG | - | chr8_1:53748402-53748421 | Msa1200800:five_prime_UTR | 35.0% |
| ! | ATTGACTTTAAGTACACAGG+AGG | + | chr8_1:53748442-53748461 | None:intergenic | 35.0% |
| CGTTTCAATTCTGTTCTGTT+CGG | - | chr8_1:53748471-53748490 | Msa1200800:five_prime_UTR | 35.0% | |
| ! | TTGAAGTTTAGGGTTTACGC+GGG | + | chr8_1:53746917-53746936 | None:intergenic | 40.0% |
| ! | ATCAGCTTTAACTTTCGGCA+TGG | + | chr8_1:53747115-53747134 | None:intergenic | 40.0% |
| !!! | GATTTTAGCTTGAAGCGCAA+AGG | - | chr8_1:53747283-53747302 | Msa1200800:CDS | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr8_1:53747370-53747389 | None:intergenic | 40.0% |
| AATTAGGTCGGAAAAGCTTG+CGG | - | chr8_1:53747687-53747706 | Msa1200800:intron | 40.0% | |
| ACAAGCCTACAACAAGAAAC+TGG | - | chr8_1:53747934-53747953 | Msa1200800:intron | 40.0% | |
| TTATTAGGAGGGAAAAGACG+AGG | - | chr8_1:53748051-53748070 | Msa1200800:CDS | 40.0% | |
| CAATGATGAGGATGAAGATG+AGG | - | chr8_1:53748105-53748124 | Msa1200800:intron | 40.0% | |
| TTTAACCTTGTAGGAGGATG+AGG | - | chr8_1:53748215-53748234 | Msa1200800:CDS | 40.0% | |
| ACCACCACATGATGAAGTTT+AGG | - | chr8_1:53748281-53748300 | Msa1200800:five_prime_UTR | 40.0% | |
| CCACCACATGATGAAGTTTA+GGG | - | chr8_1:53748282-53748301 | Msa1200800:five_prime_UTR | 40.0% | |
| GATACTGAACCGTACTTTAG+AGG | + | chr8_1:53748414-53748433 | None:intergenic | 40.0% | |
| ! | TTGAAGTTTAGGGTTTACGC+GGG | + | chr8_1:53746917-53746936 | None:intergenic | 40.0% |
| ! | ATCAGCTTTAACTTTCGGCA+TGG | + | chr8_1:53747115-53747134 | None:intergenic | 40.0% |
| !!! | GATTTTAGCTTGAAGCGCAA+AGG | - | chr8_1:53747283-53747302 | Msa1200800:CDS | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | + | chr8_1:53747370-53747389 | None:intergenic | 40.0% |
| AATTAGGTCGGAAAAGCTTG+CGG | - | chr8_1:53747687-53747706 | Msa1200800:intron | 40.0% | |
| ACAAGCCTACAACAAGAAAC+TGG | - | chr8_1:53747934-53747953 | Msa1200800:intron | 40.0% | |
| TTATTAGGAGGGAAAAGACG+AGG | - | chr8_1:53748051-53748070 | Msa1200800:CDS | 40.0% | |
| CAATGATGAGGATGAAGATG+AGG | - | chr8_1:53748105-53748124 | Msa1200800:intron | 40.0% | |
| TTTAACCTTGTAGGAGGATG+AGG | - | chr8_1:53748215-53748234 | Msa1200800:CDS | 40.0% | |
| ACCACCACATGATGAAGTTT+AGG | - | chr8_1:53748281-53748300 | Msa1200800:five_prime_UTR | 40.0% | |
| CCACCACATGATGAAGTTTA+GGG | - | chr8_1:53748282-53748301 | Msa1200800:five_prime_UTR | 40.0% | |
| GATACTGAACCGTACTTTAG+AGG | + | chr8_1:53748414-53748433 | None:intergenic | 40.0% | |
| TAAGAAGGGTAGGGAGTGAA+GGG | + | chr8_1:53746982-53747001 | None:intergenic | 45.0% | |
| ATAAGAAGGGTAGGGAGTGA+AGG | + | chr8_1:53746983-53747002 | None:intergenic | 45.0% | |
| AACGAGAGAGGGGATAAGAA+GGG | + | chr8_1:53746996-53747015 | None:intergenic | 45.0% | |
| !!! | ATTTTGGAGCGAACGAGAGA+GGG | + | chr8_1:53747007-53747026 | None:intergenic | 45.0% |
| AAAGGAGCGAGTTGCTGAAT+CGG | + | chr8_1:53747083-53747102 | None:intergenic | 45.0% | |
| ATTCCAAACCCGCTGATAAC+CGG | - | chr8_1:53747133-53747152 | Msa1200800:intron | 45.0% | |
| ! | AGCGATTTACCGGTTATCAG+CGG | + | chr8_1:53747145-53747164 | None:intergenic | 45.0% |
| AACGGTGAGAAGCGATTTAC+CGG | + | chr8_1:53747155-53747174 | None:intergenic | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+TGG | + | chr8_1:53747361-53747380 | None:intergenic | 45.0% |
| GAGATTTCTTACAGCGGCAA+CGG | + | chr8_1:53747559-53747578 | None:intergenic | 45.0% | |
| TTCAATGCCCTAGCAGCATA+AGG | + | chr8_1:53747887-53747906 | None:intergenic | 45.0% | |
| ATCATCCTCATCCTCCTACA+AGG | + | chr8_1:53748223-53748242 | None:intergenic | 45.0% | |
| CCCTAAACTTCATCATGTGG+TGG | + | chr8_1:53748285-53748304 | None:intergenic | 45.0% | |
| TAAGAAGGGTAGGGAGTGAA+GGG | + | chr8_1:53746982-53747001 | None:intergenic | 45.0% | |
| ATAAGAAGGGTAGGGAGTGA+AGG | + | chr8_1:53746983-53747002 | None:intergenic | 45.0% | |
| AACGAGAGAGGGGATAAGAA+GGG | + | chr8_1:53746996-53747015 | None:intergenic | 45.0% | |
| !!! | ATTTTGGAGCGAACGAGAGA+GGG | + | chr8_1:53747007-53747026 | None:intergenic | 45.0% |
| AAAGGAGCGAGTTGCTGAAT+CGG | + | chr8_1:53747083-53747102 | None:intergenic | 45.0% | |
| ATTCCAAACCCGCTGATAAC+CGG | - | chr8_1:53747133-53747152 | Msa1200800:intron | 45.0% | |
| ! | AGCGATTTACCGGTTATCAG+CGG | + | chr8_1:53747145-53747164 | None:intergenic | 45.0% |
| AACGGTGAGAAGCGATTTAC+CGG | + | chr8_1:53747155-53747174 | None:intergenic | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+TGG | + | chr8_1:53747361-53747380 | None:intergenic | 45.0% |
| GAGATTTCTTACAGCGGCAA+CGG | + | chr8_1:53747559-53747578 | None:intergenic | 45.0% | |
| TTCAATGCCCTAGCAGCATA+AGG | + | chr8_1:53747887-53747906 | None:intergenic | 45.0% | |
| ATCATCCTCATCCTCCTACA+AGG | + | chr8_1:53748223-53748242 | None:intergenic | 45.0% | |
| CCCTAAACTTCATCATGTGG+TGG | + | chr8_1:53748285-53748304 | None:intergenic | 45.0% | |
| GAGAGGGGATAAGAAGGGTA+GGG | + | chr8_1:53746991-53747010 | None:intergenic | 50.0% | |
| AGAGAGGGGATAAGAAGGGT+AGG | + | chr8_1:53746992-53747011 | None:intergenic | 50.0% | |
| GAACGAGAGAGGGGATAAGA+AGG | + | chr8_1:53746997-53747016 | None:intergenic | 50.0% | |
| !!! | TTTTGGAGCGAACGAGAGAG+GGG | + | chr8_1:53747006-53747025 | None:intergenic | 50.0% |
| !!! | GATTTTGGAGCGAACGAGAG+AGG | + | chr8_1:53747008-53747027 | None:intergenic | 50.0% |
| TCGGCATGGCGAAAAACGAA+AGG | + | chr8_1:53747101-53747120 | None:intergenic | 50.0% | |
| ! | TTACCGGTTATCAGCGGGTT+TGG | + | chr8_1:53747139-53747158 | None:intergenic | 50.0% |
| ! | GCGATTTACCGGTTATCAGC+GGG | + | chr8_1:53747144-53747163 | None:intergenic | 50.0% |
| ACAGACGAAGAAAGCAGCGA+AGG | - | chr8_1:53747324-53747343 | Msa1200800:intron | 50.0% | |
| !! | GGAGGTCTCTTTGGCTTGTT+AGG | + | chr8_1:53747352-53747371 | None:intergenic | 50.0% |
| !! | GCGGCAACGGATTTGTTGTT+AGG | + | chr8_1:53747546-53747565 | None:intergenic | 50.0% |
| GAAAAGCTTGCGGTGAAGCA+TGG | - | chr8_1:53747697-53747716 | Msa1200800:intron | 50.0% | |
| ACAAGGCTCCTTATGCTGCT+AGG | - | chr8_1:53747876-53747895 | Msa1200800:intron | 50.0% | |
| CAAGGCTCCTTATGCTGCTA+GGG | - | chr8_1:53747877-53747896 | Msa1200800:intron | 50.0% | |
| GAGGGAAAAGACGAGGAAGA+TGG | - | chr8_1:53748058-53748077 | Msa1200800:intron | 50.0% | |
| GAGAGGGGATAAGAAGGGTA+GGG | + | chr8_1:53746991-53747010 | None:intergenic | 50.0% | |
| AGAGAGGGGATAAGAAGGGT+AGG | + | chr8_1:53746992-53747011 | None:intergenic | 50.0% | |
| GAACGAGAGAGGGGATAAGA+AGG | + | chr8_1:53746997-53747016 | None:intergenic | 50.0% | |
| !!! | TTTTGGAGCGAACGAGAGAG+GGG | + | chr8_1:53747006-53747025 | None:intergenic | 50.0% |
| !!! | GATTTTGGAGCGAACGAGAG+AGG | + | chr8_1:53747008-53747027 | None:intergenic | 50.0% |
| TCGGCATGGCGAAAAACGAA+AGG | + | chr8_1:53747101-53747120 | None:intergenic | 50.0% | |
| ! | TTACCGGTTATCAGCGGGTT+TGG | + | chr8_1:53747139-53747158 | None:intergenic | 50.0% |
| ! | GCGATTTACCGGTTATCAGC+GGG | + | chr8_1:53747144-53747163 | None:intergenic | 50.0% |
| ACAGACGAAGAAAGCAGCGA+AGG | - | chr8_1:53747324-53747343 | Msa1200800:intron | 50.0% | |
| !! | GGAGGTCTCTTTGGCTTGTT+AGG | + | chr8_1:53747352-53747371 | None:intergenic | 50.0% |
| !! | GCGGCAACGGATTTGTTGTT+AGG | + | chr8_1:53747546-53747565 | None:intergenic | 50.0% |
| GAAAAGCTTGCGGTGAAGCA+TGG | - | chr8_1:53747697-53747716 | Msa1200800:intron | 50.0% | |
| ACAAGGCTCCTTATGCTGCT+AGG | - | chr8_1:53747876-53747895 | Msa1200800:intron | 50.0% | |
| CAAGGCTCCTTATGCTGCTA+GGG | - | chr8_1:53747877-53747896 | Msa1200800:intron | 50.0% | |
| GAGGGAAAAGACGAGGAAGA+TGG | - | chr8_1:53748058-53748077 | Msa1200800:intron | 50.0% | |
| CTTCACACGGATCGATGACG+TGG | - | chr8_1:53746874-53746893 | Msa1200800:three_prime_UTR | 55.0% | |
| ! | GGGTAGGGAGTGAAGGGTAT+AGG | + | chr8_1:53746976-53746995 | None:intergenic | 55.0% |
| ! | AGCTTGAAGCGCAAAGGTGC+TGG | - | chr8_1:53747289-53747308 | Msa1200800:CDS | 55.0% |
| CTTCACACGGATCGATGACG+TGG | - | chr8_1:53746874-53746893 | Msa1200800:three_prime_UTR | 55.0% | |
| ! | GGGTAGGGAGTGAAGGGTAT+AGG | + | chr8_1:53746976-53746995 | None:intergenic | 55.0% |
| ! | AGCTTGAAGCGCAAAGGTGC+TGG | - | chr8_1:53747289-53747308 | Msa1200800:CDS | 55.0% |
| !! | AAGCGCAAAGGTGCTGGAGC+TGG | - | chr8_1:53747295-53747314 | Msa1200800:intron | 60.0% |
| !! | GCAAAGGTGCTGGAGCTGGA+AGG | - | chr8_1:53747299-53747318 | Msa1200800:intron | 60.0% |
| !! | AAGCGCAAAGGTGCTGGAGC+TGG | - | chr8_1:53747295-53747314 | Msa1200800:intron | 60.0% |
| !! | GCAAAGGTGCTGGAGCTGGA+AGG | - | chr8_1:53747299-53747318 | Msa1200800:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 53746833 | 53748534 | 53746833 | ID=Msa1200800;Name=Msa1200800 |
| chr8_1 | mRNA | 53746833 | 53748534 | 53746833 | ID=Msa1200800-mRNA-1;Parent=Msa1200800;Name=Msa1200800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=281|1|1|1|1|1|7|274|142 |
| chr8_1 | exon | 53746833 | 53747139 | 53746833 | ID=Msa1200800-mRNA-1:exon:17238;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53747241 | 53747309 | 53747241 | ID=Msa1200800-mRNA-1:exon:17237;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53747412 | 53747492 | 53747412 | ID=Msa1200800-mRNA-1:exon:17236;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53747630 | 53747674 | 53747630 | ID=Msa1200800-mRNA-1:exon:17235;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53747801 | 53747858 | 53747801 | ID=Msa1200800-mRNA-1:exon:17234;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53747975 | 53748076 | 53747975 | ID=Msa1200800-mRNA-1:exon:17233;Parent=Msa1200800-mRNA-1 |
| chr8_1 | exon | 53748213 | 53748534 | 53748213 | ID=Msa1200800-mRNA-1:exon:17232;Parent=Msa1200800-mRNA-1 |
| chr8_1 | five_prime_UTR | 53748254 | 53748534 | 53748254 | ID=Msa1200800-mRNA-1:five_prime_utr;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53748213 | 53748253 | 53748213 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747975 | 53748076 | 53747975 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747801 | 53747858 | 53747801 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747630 | 53747674 | 53747630 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747412 | 53747492 | 53747412 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747241 | 53747309 | 53747241 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | CDS | 53747107 | 53747139 | 53747107 | ID=Msa1200800-mRNA-1:cds;Parent=Msa1200800-mRNA-1 |
| chr8_1 | three_prime_UTR | 53746833 | 53747106 | 53746833 | ID=Msa1200800-mRNA-1:three_prime_utr;Parent=Msa1200800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
