Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201480 | sp|Q5XF11|FB248_ARATH | 51.701 | 294 | 88 | 7 | 24 | 263 | 27 | 320 | 7.61e-89 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201480 | G7LB69 | 98.864 | 264 | 3 | 0 | 1 | 264 | 1 | 264 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1201480 | Msa1254580 | 0.845959 | 2.933331e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201480 | MtrunA17_Chr8g0371451 | 98.864 | 264 | 3 | 0 | 1 | 264 | 1 | 264 | 0.0 | 535 |
| Msa1201480 | MtrunA17_Chr4g0048291 | 33.884 | 121 | 67 | 2 | 99 | 219 | 53 | 160 | 9.32e-16 | 72.8 |
| Msa1201480 | MtrunA17_Chr2g0281161 | 32.743 | 113 | 51 | 3 | 107 | 219 | 21 | 108 | 9.13e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201480 | AT4G35930.1 | 51.701 | 294 | 88 | 7 | 24 | 263 | 27 | 320 | 7.73e-90 | 269 |
| Msa1201480 | AT4G35930.3 | 51.525 | 295 | 88 | 8 | 24 | 263 | 27 | 321 | 3.80e-88 | 265 |
| Msa1201480 | AT4G35930.4 | 51.525 | 295 | 88 | 8 | 24 | 263 | 27 | 321 | 3.80e-88 | 265 |
| Msa1201480 | AT4G35930.2 | 48.529 | 204 | 55 | 4 | 24 | 177 | 27 | 230 | 1.53e-52 | 172 |
| Msa1201480 | AT1G61340.1 | 49.180 | 61 | 30 | 1 | 96 | 156 | 69 | 128 | 1.25e-13 | 68.2 |
| Msa1201480 | AT1G61340.2 | 49.180 | 61 | 30 | 1 | 96 | 156 | 69 | 128 | 1.25e-13 | 68.2 |
Find 96 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTCACTCTCTGATTT+AGG | 0.110155 | 8_1:+54647909 | Msa1201480:five_prime_UTR |
| GATGCTTTCGCCGGTGAATT+TGG | 0.162356 | 8_1:+54648369 | Msa1201480:CDS |
| GTCTCTTCCCATTGATTTAT+TGG | 0.178375 | 8_1:+54648465 | Msa1201480:CDS |
| GTCGCATCTCAGAAACTTTA+AGG | 0.207710 | 8_1:-54650021 | None:intergenic |
| TTCTCTCACTCTCTGATTTA+GGG | 0.210674 | 8_1:+54647910 | Msa1201480:five_prime_UTR |
| CTTCGGTGTAGCAAGTATTT+AGG | 0.244572 | 8_1:+54648232 | Msa1201480:CDS |
| GTGAGAGGGAAAATAGTTAA+AGG | 0.280655 | 8_1:-54647886 | None:intergenic |
| GCCGACCCTCCACACCTAAT+TGG | 0.288615 | 8_1:-54650334 | None:intergenic |
| GGTAGGGTTTGTAATGATAT+TGG | 0.294679 | 8_1:+54648271 | Msa1201480:CDS |
| CGAAGCTGAGCTAGGGTTCC+AGG | 0.295787 | 8_1:-54648214 | None:intergenic |
| ACTGATTTGCACTGGGGCTT+TGG | 0.309229 | 8_1:-54650109 | None:intergenic |
| GATATTCCTGATGTCCAATT+AGG | 0.315980 | 8_1:+54650320 | Msa1201480:three_prime_UTR |
| GTAGGGTTTGTAATGATATT+GGG | 0.326687 | 8_1:+54648272 | Msa1201480:CDS |
| AGGAGAAAATCGAAGAAATC+TGG | 0.355404 | 8_1:+54648175 | Msa1201480:CDS |
| ATCTCTAGCCGAGAGCGATC+TGG | 0.368074 | 8_1:-54649793 | None:intergenic |
| GCTTTAGGTGTATGCGGGCT+TGG | 0.400069 | 8_1:-54649968 | None:intergenic |
| TGAGAGGGAAAATAGTTAAA+GGG | 0.401935 | 8_1:-54647885 | None:intergenic |
| GGCCCATGACGAGGTGCTTT+AGG | 0.403017 | 8_1:-54649983 | None:intergenic |
| GGCTTTCGCTTCTCGTTGCA+TGG | 0.410952 | 8_1:+54650072 | Msa1201480:CDS |
| GGTTCCAGGTTTCAAATACT+TGG | 0.415651 | 8_1:-54648200 | None:intergenic |
| TGTAGCAAGTATTTAGGTTC+CGG | 0.422435 | 8_1:+54648238 | Msa1201480:CDS |
| ATGAGTGTCAATCGGAATCT+AGG | 0.428539 | 8_1:+54648437 | Msa1201480:CDS |
| GGGGTGATGGGAAGGGATTA+AGG | 0.429839 | 8_1:+54649942 | Msa1201480:intron |
| CATGCATACCAATAAATCAA+TGG | 0.435349 | 8_1:-54648473 | None:intergenic |
| TCATCAATCCTCGGGGTCTT+CGG | 0.435935 | 8_1:-54648418 | None:intergenic |
| GTTCCGGATCGGGTGCTGGT+AGG | 0.437816 | 8_1:+54648254 | Msa1201480:CDS |
| GCACTGGGGCTTTGGTATAA+CGG | 0.441422 | 8_1:-54650101 | None:intergenic |
| AACCCTACCAGCACCCGATC+CGG | 0.442788 | 8_1:-54648257 | None:intergenic |
| TCTCTAGCCGAGAGCGATCT+GGG | 0.449797 | 8_1:-54649792 | None:intergenic |
| CTGATTCAATTCAAATCGAT+GGG | 0.454324 | 8_1:+54648118 | Msa1201480:exon |
| AAGTATTTAGGTTCCGGATC+GGG | 0.456904 | 8_1:+54648244 | Msa1201480:CDS |
| TTCCAGCAGGGGTGATGGGA+AGG | 0.459187 | 8_1:+54649934 | Msa1201480:intron |
| TTAGGTTCCGGATCGGGTGC+TGG | 0.466871 | 8_1:+54648250 | Msa1201480:CDS |
| ACAACGACGGAGAAAAGAAA+AGG | 0.468520 | 8_1:+54648151 | Msa1201480:CDS |
| GCTGATTCAATTCAAATCGA+TGG | 0.472128 | 8_1:+54648117 | Msa1201480:exon |
| TCCACACCTAATTGGACATC+AGG | 0.472736 | 8_1:-54650326 | None:intergenic |
| TTCCGGATCGGGTGCTGGTA+GGG | 0.473174 | 8_1:+54648255 | Msa1201480:CDS |
| TTCTAATTCTTTGAGAAACA+TGG | 0.475875 | 8_1:-54649621 | None:intergenic |
| CTCCTCGTCCTTCTGAGCAT+TGG | 0.480952 | 8_1:+54649830 | Msa1201480:CDS |
| ATGCATACCAATAAATCAAT+GGG | 0.482096 | 8_1:-54648472 | None:intergenic |
| AGAAATACTTACCACAGAAA+AGG | 0.486065 | 8_1:-54649853 | None:intergenic |
| TTTGAATTTGGAGAAGAATG+AGG | 0.487276 | 8_1:+54648312 | Msa1201480:CDS |
| CAACGACGGAGAAAAGAAAA+GGG | 0.487679 | 8_1:+54648152 | Msa1201480:CDS |
| ATTGACACTCATCAATCCTC+GGG | 0.488809 | 8_1:-54648426 | None:intergenic |
| TAGAAGCCACTGATTTGCAC+TGG | 0.490297 | 8_1:-54650117 | None:intergenic |
| GAATGAGGGTCATGAAGGTA+AGG | 0.502404 | 8_1:+54648327 | Msa1201480:CDS |
| TCCAATTAGGTGTGGAGGGT+CGG | 0.507458 | 8_1:+54650333 | Msa1201480:three_prime_UTR |
| TAAAGTTTCTGAGATGCGAC+AGG | 0.519219 | 8_1:+54650024 | Msa1201480:CDS |
| TCCAGCAGGGGTGATGGGAA+GGG | 0.519254 | 8_1:+54649935 | Msa1201480:intron |
| CTCTCAATTGATCATGGTGC+AGG | 0.521810 | 8_1:-54649591 | None:intergenic |
| AGAGAGTGAGAGAAAGTGAG+AGG | 0.523053 | 8_1:-54647901 | None:intergenic |
| GAGAGTGAGAGAAAGTGAGA+GGG | 0.525521 | 8_1:-54647900 | None:intergenic |
| TTAAACAGAGTAGTTCTGTT+GGG | 0.526691 | 8_1:+54648392 | Msa1201480:CDS |
| TGATGTCCAATTAGGTGTGG+AGG | 0.538552 | 8_1:+54650328 | Msa1201480:three_prime_UTR |
| CTGGAACCCTAGCTCAGCTT+CGG | 0.543663 | 8_1:+54648215 | Msa1201480:CDS |
| GTTAAACAGAGTAGTTCTGT+TGG | 0.544516 | 8_1:+54648391 | Msa1201480:CDS |
| CTCTGTTTAACCAAATTCAC+CGG | 0.544759 | 8_1:-54648379 | None:intergenic |
| TGCTACACCGAAGCTGAGCT+AGG | 0.545459 | 8_1:-54648222 | None:intergenic |
| AGAAAAGGCCAATGCTCAGA+AGG | 0.546721 | 8_1:-54649838 | None:intergenic |
| GAGGATTGATGAGTGTCAAT+CGG | 0.547013 | 8_1:+54648429 | Msa1201480:CDS |
| AGAAGCCACTGATTTGCACT+GGG | 0.548581 | 8_1:-54650116 | None:intergenic |
| GAGGTGCTTTAGGTGTATGC+GGG | 0.548835 | 8_1:-54649973 | None:intergenic |
| TTGAATTTGGAGAAGAATGA+GGG | 0.549112 | 8_1:+54648313 | Msa1201480:CDS |
| GAGAGGGAAAATAGTTAAAG+GGG | 0.550199 | 8_1:-54647884 | None:intergenic |
| AAACAGCTCTCAATTGATCA+TGG | 0.550788 | 8_1:-54649597 | None:intergenic |
| GGAGAAAATCGAAGAAATCT+GGG | 0.555869 | 8_1:+54648176 | Msa1201480:CDS |
| CACCTAAAGCACCTCGTCAT+GGG | 0.557635 | 8_1:+54649981 | Msa1201480:CDS |
| GATTGACACTCATCAATCCT+CGG | 0.558517 | 8_1:-54648427 | None:intergenic |
| GAGAAGAATGAGGGTCATGA+AGG | 0.559177 | 8_1:+54648322 | Msa1201480:CDS |
| ATACTACCCCAGATCGCTCT+CGG | 0.562173 | 8_1:+54649785 | Msa1201480:CDS |
| CAAGTATTTAGGTTCCGGAT+CGG | 0.563636 | 8_1:+54648243 | Msa1201480:CDS |
| AAAAGAACTATACAAAGTGA+AGG | 0.563764 | 8_1:-54650223 | None:intergenic |
| ACACCTAAAGCACCTCGTCA+TGG | 0.564528 | 8_1:+54649980 | Msa1201480:CDS |
| CGAGGTGCTTTAGGTGTATG+CGG | 0.574471 | 8_1:-54649974 | None:intergenic |
| CTGTGAAGATGAACTATGCA+AGG | 0.576710 | 8_1:+54650153 | Msa1201480:CDS |
| TTAAGGCGAGAAGGAGGTCG+AGG | 0.593863 | 8_1:-54650004 | None:intergenic |
| GGGACCAAGTATTTGAAACC+TGG | 0.596944 | 8_1:+54648196 | Msa1201480:CDS |
| TCCTGATGTCCAATTAGGTG+TGG | 0.597945 | 8_1:+54650325 | Msa1201480:three_prime_UTR |
| TGGGGCTTTGGTATAACGGA+TGG | 0.601660 | 8_1:-54650097 | None:intergenic |
| AAAGAACTATACAAAGTGAA+GGG | 0.602512 | 8_1:-54650222 | None:intergenic |
| AAGTCCGCTGATGCTTTCGC+CGG | 0.607611 | 8_1:+54648360 | Msa1201480:CDS |
| GATGTCCAATTAGGTGTGGA+GGG | 0.608811 | 8_1:+54650329 | Msa1201480:three_prime_UTR |
| GCTACACCGAAGCTGAGCTA+GGG | 0.609640 | 8_1:-54648221 | None:intergenic |
| TCAGAAACTTTAAGGCGAGA+AGG | 0.612804 | 8_1:-54650013 | None:intergenic |
| TTCACCGGCGAAAGCATCAG+CGG | 0.630148 | 8_1:-54648364 | None:intergenic |
| GGAGGTCGAGGCCCATGACG+AGG | 0.634443 | 8_1:-54649992 | None:intergenic |
| GGCCAATGCTCAGAAGGACG+AGG | 0.635262 | 8_1:-54649832 | None:intergenic |
| GAAACTTTAAGGCGAGAAGG+AGG | 0.650069 | 8_1:-54650010 | None:intergenic |
| AAAGCCCCAGTGCAAATCAG+TGG | 0.650092 | 8_1:+54650111 | Msa1201480:CDS |
| CGACGGAGAAAAGAAAAGGG+AGG | 0.669828 | 8_1:+54648155 | Msa1201480:CDS |
| CTCTAGCCGAGAGCGATCTG+GGG | 0.679113 | 8_1:-54649791 | None:intergenic |
| GAAGCCACTGATTTGCACTG+GGG | 0.689916 | 8_1:-54650115 | None:intergenic |
| TTGGGACGCCGAAGACCCCG+AGG | 0.698934 | 8_1:+54648410 | Msa1201480:CDS |
| TGATTCAATTCAAATCGATG+GGG | 0.702466 | 8_1:+54648119 | Msa1201480:exon |
| GGGGAAAGTGACGACAACGA+CGG | 0.704240 | 8_1:+54648138 | Msa1201480:CDS |
| TTGACACTCATCAATCCTCG+GGG | 0.722658 | 8_1:-54648425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTCTTGTTTTTTTTTTA+GGG | + | chr8_1:54648082-54648101 | Msa1201480:intron | 15.0% |
| !!! | ATTTTATTATGATAAGTATC+TGG | + | chr8_1:54648577-54648596 | Msa1201480:intron | 15.0% |
| !! | AATTAATTATGAAGCATATA+AGG | + | chr8_1:54649350-54649369 | Msa1201480:intron | 15.0% |
| !! | ATCAATTGAATATAGTAAAA+TGG | - | chr8_1:54649466-54649485 | None:intergenic | 15.0% |
| !! | AAAAAATTGGAGATTGAAAA+TGG | - | chr8_1:54647950-54647969 | None:intergenic | 20.0% |
| !!! | ATTTCTGTTTTTGATTATTC+TGG | + | chr8_1:54648040-54648059 | Msa1201480:intron | 20.0% |
| !!! | CTTGTTCTTGTTTTTTTTTT+AGG | + | chr8_1:54648081-54648100 | Msa1201480:intron | 20.0% |
| !! | ATTTAATTACTCGCAATTAA+TGG | + | chr8_1:54648512-54648531 | Msa1201480:intron | 20.0% |
| !!! | TATTCAATTTTCAACCTTAT+AGG | + | chr8_1:54648789-54648808 | Msa1201480:intron | 20.0% |
| !! | AATATCTAGACTAATTTGAT+GGG | - | chr8_1:54648926-54648945 | None:intergenic | 20.0% |
| !! | TAATATCTAGACTAATTTGA+TGG | - | chr8_1:54648927-54648946 | None:intergenic | 20.0% |
| !!! | ATCAAATTAGTCTAGATATT+AGG | + | chr8_1:54648926-54648945 | Msa1201480:intron | 20.0% |
| !! | TCAAATTATGAAAGAAAATG+GGG | - | chr8_1:54649553-54649572 | None:intergenic | 20.0% |
| !! | CTCAAATTATGAAAGAAAAT+GGG | - | chr8_1:54649554-54649573 | None:intergenic | 20.0% |
| ! | ACTCACATGAAGAAAAAAAT+TGG | - | chr8_1:54647963-54647982 | None:intergenic | 25.0% |
| !! | TTCAAAAAGCATGAAGAAAA+AGG | - | chr8_1:54647991-54648010 | None:intergenic | 25.0% |
| ! | ATGCATACCAATAAATCAAT+GGG | - | chr8_1:54648475-54648494 | None:intergenic | 25.0% |
| !!! | TAGTCGAACTTGTTTTTATT+TGG | + | chr8_1:54648542-54648561 | Msa1201480:intron | 25.0% |
| !!! | ACTTGTTTTTATTTGGCATT+TGG | + | chr8_1:54648549-54648568 | Msa1201480:intron | 25.0% |
| ! | ATGATAAGTATCTGGATTAA+AGG | + | chr8_1:54648585-54648604 | Msa1201480:intron | 25.0% |
| !! | TTAAAATGATTGTCCTTTTG+TGG | + | chr8_1:54648622-54648641 | Msa1201480:intron | 25.0% |
| ! | GTTGATATTGTGGAATATTA+GGG | + | chr8_1:54648647-54648666 | Msa1201480:intron | 25.0% |
| !!! | TGGTTTTTGAGTGTTAATAT+TGG | + | chr8_1:54648857-54648876 | Msa1201480:intron | 25.0% |
| !!! | GGTTTTTGAGTGTTAATATT+GGG | + | chr8_1:54648858-54648877 | Msa1201480:intron | 25.0% |
| !!! | GTTTTTGAGTGTTAATATTG+GGG | + | chr8_1:54648859-54648878 | Msa1201480:intron | 25.0% |
| ! | ACATAGAATCTTCAAAATCA+GGG | - | chr8_1:54648888-54648907 | None:intergenic | 25.0% |
| !!! | TTTTTTAGTATTTGCCTTTG+TGG | + | chr8_1:54649071-54649090 | Msa1201480:intron | 25.0% |
| !!! | TTTTTAGTATTTGCCTTTGT+GGG | + | chr8_1:54649072-54649091 | Msa1201480:intron | 25.0% |
| !!! | GTGTTTTTGATTGTTTTGAT+TGG | + | chr8_1:54649319-54649338 | Msa1201480:intron | 25.0% |
| ! | CCTCAAATTATGAAAGAAAA+TGG | - | chr8_1:54649555-54649574 | None:intergenic | 25.0% |
| !! | CCATTTTCTTTCATAATTTG+AGG | + | chr8_1:54649552-54649571 | Msa1201480:intron | 25.0% |
| !! | TTCTAATTCTTTGAGAAACA+TGG | - | chr8_1:54649624-54649643 | None:intergenic | 25.0% |
| !! | CTAACTTTTGTAGTGTTTTT+AGG | + | chr8_1:54649732-54649751 | Msa1201480:intron | 25.0% |
| ! | AGACATGATTTAAAAATCAC+AGG | - | chr8_1:54649895-54649914 | None:intergenic | 25.0% |
| ! | AAAGAACTATACAAAGTGAA+GGG | - | chr8_1:54650225-54650244 | None:intergenic | 25.0% |
| ! | AAAAGAACTATACAAAGTGA+AGG | - | chr8_1:54650226-54650245 | None:intergenic | 25.0% |
| !!! | CACTTTGTATAGTTCTTTTT+TGG | + | chr8_1:54650227-54650246 | Msa1201480:three_prime_UTR | 25.0% |
| TGAGAGGGAAAATAGTTAAA+GGG | - | chr8_1:54647888-54647907 | None:intergenic | 30.0% | |
| CTGATTCAATTCAAATCGAT+GGG | + | chr8_1:54648118-54648137 | Msa1201480:exon | 30.0% | |
| TGATTCAATTCAAATCGATG+GGG | + | chr8_1:54648119-54648138 | Msa1201480:exon | 30.0% | |
| GTAGGGTTTGTAATGATATT+GGG | + | chr8_1:54648272-54648291 | Msa1201480:CDS | 30.0% | |
| ! | AAGAGTTGAGCTTTTGAATT+TGG | + | chr8_1:54648300-54648319 | Msa1201480:CDS | 30.0% |
| TTTGAATTTGGAGAAGAATG+AGG | + | chr8_1:54648312-54648331 | Msa1201480:CDS | 30.0% | |
| TTGAATTTGGAGAAGAATGA+GGG | + | chr8_1:54648313-54648332 | Msa1201480:CDS | 30.0% | |
| ! | TTAAACAGAGTAGTTCTGTT+GGG | + | chr8_1:54648392-54648411 | Msa1201480:CDS | 30.0% |
| CATGCATACCAATAAATCAA+TGG | - | chr8_1:54648476-54648495 | None:intergenic | 30.0% | |
| TGGATTAAAGGTTGAGAATT+GGG | + | chr8_1:54648597-54648616 | Msa1201480:intron | 30.0% | |
| CGTTGATATTGTGGAATATT+AGG | + | chr8_1:54648646-54648665 | Msa1201480:intron | 30.0% | |
| TCAAGAATCACAATCCTATA+AGG | - | chr8_1:54648806-54648825 | None:intergenic | 30.0% | |
| ! | AGACAAAAAAGCATGAGAAA+AGG | - | chr8_1:54648831-54648850 | None:intergenic | 30.0% |
| !!! | ATGCTTTTTTGTCTTGTTCA+TGG | + | chr8_1:54648837-54648856 | Msa1201480:intron | 30.0% |
| CACATAGAATCTTCAAAATC+AGG | - | chr8_1:54648889-54648908 | None:intergenic | 30.0% | |
| !! | CTGATTTTGAAGATTCTATG+TGG | + | chr8_1:54648887-54648906 | Msa1201480:intron | 30.0% |
| TTAGTCTAGATATTAGGTGA+AGG | + | chr8_1:54648932-54648951 | Msa1201480:intron | 30.0% | |
| ! | AGGGAAATACTGTATTGTTT+TGG | + | chr8_1:54649162-54649181 | Msa1201480:intron | 30.0% |
| ACCACTTCAATTCATCTAAA+CGG | - | chr8_1:54649694-54649713 | None:intergenic | 30.0% | |
| !!! | GTAGTGTTTTTAGGTTATTG+TGG | + | chr8_1:54649741-54649760 | Msa1201480:intron | 30.0% |
| AGAAATACTTACCACAGAAA+AGG | - | chr8_1:54649856-54649875 | None:intergenic | 30.0% | |
| AATCACAGGAAAGAGATAAT+TGG | - | chr8_1:54649881-54649900 | None:intergenic | 30.0% | |
| !!! | TGCTATAATTTTTTTCCAGC+AGG | + | chr8_1:54649921-54649940 | Msa1201480:intron | 30.0% |
| !!! | GCTATAATTTTTTTCCAGCA+GGG | + | chr8_1:54649922-54649941 | Msa1201480:intron | 30.0% |
| !!! | CTATAATTTTTTTCCAGCAG+GGG | + | chr8_1:54649923-54649942 | Msa1201480:intron | 30.0% |
| ! | TACAATTTTGTAGTCTGTGT+TGG | + | chr8_1:54650278-54650297 | Msa1201480:three_prime_UTR | 30.0% |
| ! | ACAATTTTGTAGTCTGTGTT+GGG | + | chr8_1:54650279-54650298 | Msa1201480:three_prime_UTR | 30.0% |
| GAGAGGGAAAATAGTTAAAG+GGG | - | chr8_1:54647887-54647906 | None:intergenic | 35.0% | |
| GTGAGAGGGAAAATAGTTAA+AGG | - | chr8_1:54647889-54647908 | None:intergenic | 35.0% | |
| TTTCTCTCACTCTCTGATTT+AGG | + | chr8_1:54647909-54647928 | Msa1201480:five_prime_UTR | 35.0% | |
| TTCTCTCACTCTCTGATTTA+GGG | + | chr8_1:54647910-54647929 | Msa1201480:five_prime_UTR | 35.0% | |
| ! | GCTGATTCAATTCAAATCGA+TGG | + | chr8_1:54648117-54648136 | Msa1201480:exon | 35.0% |
| AGGAGAAAATCGAAGAAATC+TGG | + | chr8_1:54648175-54648194 | Msa1201480:CDS | 35.0% | |
| GGAGAAAATCGAAGAAATCT+GGG | + | chr8_1:54648176-54648195 | Msa1201480:CDS | 35.0% | |
| ! | TGTAGCAAGTATTTAGGTTC+CGG | + | chr8_1:54648238-54648257 | Msa1201480:CDS | 35.0% |
| GGTAGGGTTTGTAATGATAT+TGG | + | chr8_1:54648271-54648290 | Msa1201480:CDS | 35.0% | |
| CTCTGTTTAACCAAATTCAC+CGG | - | chr8_1:54648382-54648401 | None:intergenic | 35.0% | |
| ! | GTTAAACAGAGTAGTTCTGT+TGG | + | chr8_1:54648391-54648410 | Msa1201480:CDS | 35.0% |
| !! | GTCTCTTCCCATTGATTTAT+TGG | + | chr8_1:54648465-54648484 | Msa1201480:CDS | 35.0% |
| CTGGATTAAAGGTTGAGAAT+TGG | + | chr8_1:54648596-54648615 | Msa1201480:intron | 35.0% | |
| ACAATATCAACGACCACAAA+AGG | - | chr8_1:54648638-54648657 | None:intergenic | 35.0% | |
| ! | TTTTGTGGTCGTTGATATTG+TGG | + | chr8_1:54648637-54648656 | Msa1201480:intron | 35.0% |
| ACACAAGCAAGAATAAACAG+AGG | - | chr8_1:54649220-54649239 | None:intergenic | 35.0% | |
| ! | GCTTGTGTTTGTTGATTGTA+TGG | + | chr8_1:54649232-54649251 | Msa1201480:intron | 35.0% |
| AAACAGCTCTCAATTGATCA+TGG | - | chr8_1:54649600-54649619 | None:intergenic | 35.0% | |
| TCATAGTCATATAAGCAGCA+GGG | - | chr8_1:54649667-54649686 | None:intergenic | 35.0% | |
| TTCATAGTCATATAAGCAGC+AGG | - | chr8_1:54649668-54649687 | None:intergenic | 35.0% | |
| TCCGTTTAGATGAATTGAAG+TGG | + | chr8_1:54649690-54649709 | Msa1201480:intron | 35.0% | |
| !!! | GTTTTTAGGTTATTGTGGCA+AGG | + | chr8_1:54649746-54649765 | Msa1201480:intron | 35.0% |
| !! | AGCTGTTCTTTTCAAGGAAT+CGG | + | chr8_1:54650051-54650070 | Msa1201480:CDS | 35.0% |
| !!! | TTTTGGTTTCTAGTGAATGC+TGG | + | chr8_1:54650244-54650263 | Msa1201480:three_prime_UTR | 35.0% |
| ! | CAATTTTGTAGTCTGTGTTG+GGG | + | chr8_1:54650280-54650299 | Msa1201480:three_prime_UTR | 35.0% |
| ! | AATTTTGTAGTCTGTGTTGG+GGG | + | chr8_1:54650281-54650300 | Msa1201480:three_prime_UTR | 35.0% |
| GATATTCCTGATGTCCAATT+AGG | + | chr8_1:54650320-54650339 | Msa1201480:three_prime_UTR | 35.0% | |
| ACAACGACGGAGAAAAGAAA+AGG | + | chr8_1:54648151-54648170 | Msa1201480:CDS | 40.0% | |
| CAACGACGGAGAAAAGAAAA+GGG | + | chr8_1:54648152-54648171 | Msa1201480:CDS | 40.0% | |
| GGTTCCAGGTTTCAAATACT+TGG | - | chr8_1:54648203-54648222 | None:intergenic | 40.0% | |
| ! | CTTCGGTGTAGCAAGTATTT+AGG | + | chr8_1:54648232-54648251 | Msa1201480:CDS | 40.0% |
| ! | CAAGTATTTAGGTTCCGGAT+CGG | + | chr8_1:54648243-54648262 | Msa1201480:CDS | 40.0% |
| ! | AAGTATTTAGGTTCCGGATC+GGG | + | chr8_1:54648244-54648263 | Msa1201480:CDS | 40.0% |
| ATTGACACTCATCAATCCTC+GGG | - | chr8_1:54648429-54648448 | None:intergenic | 40.0% | |
| GATTGACACTCATCAATCCT+CGG | - | chr8_1:54648430-54648449 | None:intergenic | 40.0% | |
| GAGGATTGATGAGTGTCAAT+CGG | + | chr8_1:54648429-54648448 | Msa1201480:CDS | 40.0% | |
| ATGAGTGTCAATCGGAATCT+AGG | + | chr8_1:54648437-54648456 | Msa1201480:CDS | 40.0% | |
| ATTAGGGTCAGCTGTAATTG+CGG | + | chr8_1:54648663-54648682 | Msa1201480:intron | 40.0% | |
| ! | AGGCAGCAACATCAAGATTT+TGG | - | chr8_1:54648704-54648723 | None:intergenic | 40.0% |
| CAAATCACTGAAACCCACAA+AGG | - | chr8_1:54649088-54649107 | None:intergenic | 40.0% | |
| TACTGTGATGAAGCACACAA+AGG | + | chr8_1:54649142-54649161 | Msa1201480:intron | 40.0% | |
| ACTGTGATGAAGCACACAAA+GGG | + | chr8_1:54649143-54649162 | Msa1201480:intron | 40.0% | |
| !! | TCAGAAACTTTAAGGCGAGA+AGG | - | chr8_1:54650016-54650035 | None:intergenic | 40.0% |
| GTCGCATCTCAGAAACTTTA+AGG | - | chr8_1:54650024-54650043 | None:intergenic | 40.0% | |
| !! | TAAAGTTTCTGAGATGCGAC+AGG | + | chr8_1:54650024-54650043 | Msa1201480:CDS | 40.0% |
| ! | GGTTACAGCTGTTCTTTTCA+AGG | + | chr8_1:54650045-54650064 | Msa1201480:CDS | 40.0% |
| CTGTGAAGATGAACTATGCA+AGG | + | chr8_1:54650153-54650172 | Msa1201480:CDS | 40.0% | |
| GAGAGTGAGAGAAAGTGAGA+GGG | - | chr8_1:54647903-54647922 | None:intergenic | 45.0% | |
| AGAGAGTGAGAGAAAGTGAG+AGG | - | chr8_1:54647904-54647923 | None:intergenic | 45.0% | |
| ! | GGGACCAAGTATTTGAAACC+TGG | + | chr8_1:54648196-54648215 | Msa1201480:CDS | 45.0% |
| GAGAAGAATGAGGGTCATGA+AGG | + | chr8_1:54648322-54648341 | Msa1201480:CDS | 45.0% | |
| GAATGAGGGTCATGAAGGTA+AGG | + | chr8_1:54648327-54648346 | Msa1201480:CDS | 45.0% | |
| TTGACACTCATCAATCCTCG+GGG | - | chr8_1:54648428-54648447 | None:intergenic | 45.0% | |
| GATGTTGCTGCCTCAAATTG+CGG | + | chr8_1:54648711-54648730 | Msa1201480:intron | 45.0% | |
| ACTGCGAGTGATCTCAACAA+AGG | - | chr8_1:54648757-54648776 | None:intergenic | 45.0% | |
| CTCTCAATTGATCATGGTGC+AGG | - | chr8_1:54649594-54649613 | None:intergenic | 45.0% | |
| AGAAAAGGCCAATGCTCAGA+AGG | - | chr8_1:54649841-54649860 | None:intergenic | 45.0% | |
| !!! | TTTTTTTCCAGCAGGGGTGA+TGG | + | chr8_1:54649929-54649948 | Msa1201480:intron | 45.0% |
| !!! | TTTTTTCCAGCAGGGGTGAT+GGG | + | chr8_1:54649930-54649949 | Msa1201480:intron | 45.0% |
| !! | GAAACTTTAAGGCGAGAAGG+AGG | - | chr8_1:54650013-54650032 | None:intergenic | 45.0% |
| !! | AGAAGCCACTGATTTGCACT+GGG | - | chr8_1:54650119-54650138 | None:intergenic | 45.0% |
| !! | TAGAAGCCACTGATTTGCAC+TGG | - | chr8_1:54650120-54650139 | None:intergenic | 45.0% |
| TCCTGATGTCCAATTAGGTG+TGG | + | chr8_1:54650325-54650344 | Msa1201480:three_prime_UTR | 45.0% | |
| TCCACACCTAATTGGACATC+AGG | - | chr8_1:54650329-54650348 | None:intergenic | 45.0% | |
| TGATGTCCAATTAGGTGTGG+AGG | + | chr8_1:54650328-54650347 | Msa1201480:three_prime_UTR | 45.0% | |
| GATGTCCAATTAGGTGTGGA+GGG | + | chr8_1:54650329-54650348 | Msa1201480:three_prime_UTR | 45.0% | |
| CGACGGAGAAAAGAAAAGGG+AGG | + | chr8_1:54648155-54648174 | Msa1201480:CDS | 50.0% | |
| GATGCTTTCGCCGGTGAATT+TGG | + | chr8_1:54648369-54648388 | Msa1201480:CDS | 50.0% | |
| TCATCAATCCTCGGGGTCTT+CGG | - | chr8_1:54648421-54648440 | None:intergenic | 50.0% | |
| CGATCCATAGCCGCAATTTG+AGG | - | chr8_1:54648724-54648743 | None:intergenic | 50.0% | |
| ATACTACCCCAGATCGCTCT+CGG | + | chr8_1:54649785-54649804 | Msa1201480:CDS | 50.0% | |
| !!! | CTGAGCATTGGCCTTTTCTG+TGG | + | chr8_1:54649842-54649861 | Msa1201480:CDS | 50.0% |
| ! | GAGGTGCTTTAGGTGTATGC+GGG | - | chr8_1:54649976-54649995 | None:intergenic | 50.0% |
| ! | CGAGGTGCTTTAGGTGTATG+CGG | - | chr8_1:54649977-54649996 | None:intergenic | 50.0% |
| ! | ACACCTAAAGCACCTCGTCA+TGG | + | chr8_1:54649980-54649999 | Msa1201480:CDS | 50.0% |
| ! | CACCTAAAGCACCTCGTCAT+GGG | + | chr8_1:54649981-54650000 | Msa1201480:CDS | 50.0% |
| ! | TGGGGCTTTGGTATAACGGA+TGG | - | chr8_1:54650100-54650119 | None:intergenic | 50.0% |
| ! | GCACTGGGGCTTTGGTATAA+CGG | - | chr8_1:54650104-54650123 | None:intergenic | 50.0% |
| !! | ACTGATTTGCACTGGGGCTT+TGG | - | chr8_1:54650112-54650131 | None:intergenic | 50.0% |
| AAAGCCCCAGTGCAAATCAG+TGG | + | chr8_1:54650111-54650130 | Msa1201480:CDS | 50.0% | |
| !! | GAAGCCACTGATTTGCACTG+GGG | - | chr8_1:54650118-54650137 | None:intergenic | 50.0% |
| TCCAATTAGGTGTGGAGGGT+CGG | + | chr8_1:54650333-54650352 | Msa1201480:three_prime_UTR | 50.0% | |
| GGGGAAAGTGACGACAACGA+CGG | + | chr8_1:54648138-54648157 | Msa1201480:CDS | 55.0% | |
| CTGGAACCCTAGCTCAGCTT+CGG | + | chr8_1:54648215-54648234 | Msa1201480:CDS | 55.0% | |
| GCTACACCGAAGCTGAGCTA+GGG | - | chr8_1:54648224-54648243 | None:intergenic | 55.0% | |
| TGCTACACCGAAGCTGAGCT+AGG | - | chr8_1:54648225-54648244 | None:intergenic | 55.0% | |
| AAGTCCGCTGATGCTTTCGC+CGG | + | chr8_1:54648360-54648379 | Msa1201480:CDS | 55.0% | |
| !! | TTCACCGGCGAAAGCATCAG+CGG | - | chr8_1:54648367-54648386 | None:intergenic | 55.0% |
| GCTGCCTCAAATTGCGGCTA+TGG | + | chr8_1:54648717-54648736 | Msa1201480:intron | 55.0% | |
| TCTCTAGCCGAGAGCGATCT+GGG | - | chr8_1:54649795-54649814 | None:intergenic | 55.0% | |
| ATCTCTAGCCGAGAGCGATC+TGG | - | chr8_1:54649796-54649815 | None:intergenic | 55.0% | |
| CTCCTCGTCCTTCTGAGCAT+TGG | + | chr8_1:54649830-54649849 | Msa1201480:CDS | 55.0% | |
| !! | GGGGTGATGGGAAGGGATTA+AGG | + | chr8_1:54649942-54649961 | Msa1201480:intron | 55.0% |
| ! | GCTTTAGGTGTATGCGGGCT+TGG | - | chr8_1:54649971-54649990 | None:intergenic | 55.0% |
| TTAAGGCGAGAAGGAGGTCG+AGG | - | chr8_1:54650007-54650026 | None:intergenic | 55.0% | |
| GGCTTTCGCTTCTCGTTGCA+TGG | + | chr8_1:54650072-54650091 | Msa1201480:CDS | 55.0% | |
| TGTGTTGGGGGCAGTTTAGC+TGG | + | chr8_1:54650293-54650312 | Msa1201480:three_prime_UTR | 55.0% | |
| TGGGGGCAGTTTAGCTGGTA+TGG | + | chr8_1:54650298-54650317 | Msa1201480:three_prime_UTR | 55.0% | |
| CGAAGCTGAGCTAGGGTTCC+AGG | - | chr8_1:54648217-54648236 | None:intergenic | 60.0% | |
| TTAGGTTCCGGATCGGGTGC+TGG | + | chr8_1:54648250-54648269 | Msa1201480:CDS | 60.0% | |
| !! | TTCCGGATCGGGTGCTGGTA+GGG | + | chr8_1:54648255-54648274 | Msa1201480:CDS | 60.0% |
| AACCCTACCAGCACCCGATC+CGG | - | chr8_1:54648260-54648279 | None:intergenic | 60.0% | |
| CTCTAGCCGAGAGCGATCTG+GGG | - | chr8_1:54649794-54649813 | None:intergenic | 60.0% | |
| GGCCAATGCTCAGAAGGACG+AGG | - | chr8_1:54649835-54649854 | None:intergenic | 60.0% | |
| !! | TTCCAGCAGGGGTGATGGGA+AGG | + | chr8_1:54649934-54649953 | Msa1201480:intron | 60.0% |
| !! | TCCAGCAGGGGTGATGGGAA+GGG | + | chr8_1:54649935-54649954 | Msa1201480:intron | 60.0% |
| ! | GGCCCATGACGAGGTGCTTT+AGG | - | chr8_1:54649986-54650005 | None:intergenic | 60.0% |
| GCCGACCCTCCACACCTAAT+TGG | - | chr8_1:54650337-54650356 | None:intergenic | 60.0% | |
| !! | GTTCCGGATCGGGTGCTGGT+AGG | + | chr8_1:54648254-54648273 | Msa1201480:CDS | 65.0% |
| TCCCTTCCCATCACCCCTGC+TGG | - | chr8_1:54649939-54649958 | None:intergenic | 65.0% | |
| TTGGGACGCCGAAGACCCCG+AGG | + | chr8_1:54648410-54648429 | Msa1201480:CDS | 70.0% | |
| GGAGGTCGAGGCCCATGACG+AGG | - | chr8_1:54649995-54650014 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 54647882 | 54650450 | 54647882 | ID=Msa1201480;Name=Msa1201480 |
| chr8_1 | mRNA | 54647882 | 54650450 | 54647882 | ID=Msa1201480-mRNA-1;Parent=Msa1201480;Name=Msa1201480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=128|1|1|1|0.25|0.4|5|249|264 |
| chr8_1 | exon | 54647882 | 54647976 | 54647882 | ID=Msa1201480-mRNA-1:exon:17554;Parent=Msa1201480-mRNA-1 |
| chr8_1 | exon | 54648103 | 54648486 | 54648103 | ID=Msa1201480-mRNA-1:exon:17555;Parent=Msa1201480-mRNA-1 |
| chr8_1 | exon | 54649574 | 54649648 | 54649574 | ID=Msa1201480-mRNA-1:exon:17556;Parent=Msa1201480-mRNA-1 |
| chr8_1 | exon | 54649754 | 54649863 | 54649754 | ID=Msa1201480-mRNA-1:exon:17557;Parent=Msa1201480-mRNA-1 |
| chr8_1 | exon | 54649943 | 54650450 | 54649943 | ID=Msa1201480-mRNA-1:exon:17558;Parent=Msa1201480-mRNA-1 |
| chr8_1 | five_prime_UTR | 54647882 | 54647976 | 54647882 | ID=Msa1201480-mRNA-1:five_prime_utr;Parent=Msa1201480-mRNA-1 |
| chr8_1 | five_prime_UTR | 54648103 | 54648135 | 54648103 | ID=Msa1201480-mRNA-1:five_prime_utr;Parent=Msa1201480-mRNA-1 |
| chr8_1 | CDS | 54648136 | 54648486 | 54648136 | ID=Msa1201480-mRNA-1:cds;Parent=Msa1201480-mRNA-1 |
| chr8_1 | CDS | 54649574 | 54649648 | 54649574 | ID=Msa1201480-mRNA-1:cds;Parent=Msa1201480-mRNA-1 |
| chr8_1 | CDS | 54649754 | 54649863 | 54649754 | ID=Msa1201480-mRNA-1:cds;Parent=Msa1201480-mRNA-1 |
| chr8_1 | CDS | 54649943 | 54650201 | 54649943 | ID=Msa1201480-mRNA-1:cds;Parent=Msa1201480-mRNA-1 |
| chr8_1 | three_prime_UTR | 54650202 | 54650450 | 54650202 | ID=Msa1201480-mRNA-1:three_prime_utr;Parent=Msa1201480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
