Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1254580 | XP_003629266.1 | 89.394 | 264 | 2 | 2 | 1 | 238 | 1 | 264 | 3.24e-164 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1254580 | sp|Q5XF11|FB248_ARATH | 44.898 | 294 | 83 | 8 | 23 | 237 | 27 | 320 | 3.42e-67 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1254580 | G7LB69 | 89.394 | 264 | 2 | 2 | 1 | 238 | 1 | 264 | 1.55e-164 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0168310 | Msa1254580 | 0.817128 | 3.872764e-52 | -8.615850e-47 |
| Msa0235970 | Msa1254580 | -0.813923 | 2.001780e-51 | -8.615850e-47 |
| Msa1201480 | Msa1254580 | 0.845959 | 2.933331e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1254580 | MtrunA17_Chr8g0371451 | 89.394 | 264 | 2 | 2 | 1 | 238 | 1 | 264 | 2.98e-168 | 464 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1254580 | AT4G35930.1 | 44.898 | 294 | 83 | 8 | 23 | 237 | 27 | 320 | 3.47e-68 | 213 |
| Msa1254580 | AT4G35930.3 | 44.746 | 295 | 83 | 9 | 23 | 237 | 27 | 321 | 2.55e-66 | 208 |
| Msa1254580 | AT4G35930.4 | 44.746 | 295 | 83 | 9 | 23 | 237 | 27 | 321 | 2.55e-66 | 208 |
| Msa1254580 | AT4G35930.2 | 38.725 | 204 | 50 | 5 | 23 | 151 | 27 | 230 | 2.60e-31 | 116 |
Find 91 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTCTCTCTGATTT+AGG | 0.081567 | 8_2:-52682662 | Msa1254580:five_prime_UTR |
| GATGCTTTCGCCGGTGAATT+TGG | 0.162356 | 8_2:-52682208 | Msa1254580:CDS |
| CACTTTCTCTCTCTGATTTA+GGG | 0.162658 | 8_2:-52682661 | Msa1254580:five_prime_UTR |
| GTCTCTTCCCATTGATTTAT+TGG | 0.178375 | 8_2:-52682112 | Msa1254580:intron |
| GTCGCATCTCAGAAACTTTA+AGG | 0.207710 | 8_2:+52680555 | None:intergenic |
| CTTCGGTGTAGCAAGTATTT+AGG | 0.244572 | 8_2:-52682345 | Msa1254580:CDS |
| GCCGACCCTCCACACCTAAT+TGG | 0.288615 | 8_2:+52680242 | None:intergenic |
| GGTAGGGTTTGTAATGATAT+TGG | 0.294679 | 8_2:-52682306 | Msa1254580:CDS |
| CGAAGCTGAGCTAGGGTTCC+AGG | 0.295787 | 8_2:+52682363 | None:intergenic |
| ACTGATTTGCACTGGGGCTT+TGG | 0.309229 | 8_2:+52680467 | None:intergenic |
| GATATTCCTGATGTCCAATT+AGG | 0.315980 | 8_2:-52680256 | Msa1254580:three_prime_UTR |
| GTAGGGTTTGTAATGATATT+GGG | 0.326687 | 8_2:-52682305 | Msa1254580:CDS |
| CTGATTCAATTCAATTCAAT+GGG | 0.334078 | 8_2:-52682456 | Msa1254580:exon |
| GCTGATTCAATTCAATTCAA+TGG | 0.350969 | 8_2:-52682457 | Msa1254580:exon |
| ATCTCTAGCCGAGAGCGATC+TGG | 0.368074 | 8_2:+52680783 | None:intergenic |
| GCTTTAGGTGTATGCGGGCT+TGG | 0.400069 | 8_2:+52680608 | None:intergenic |
| GGCCCATGACGAGGTGCTTT+AGG | 0.403017 | 8_2:+52680593 | None:intergenic |
| GGTTCCAGGTTTCAAATACT+TGG | 0.417983 | 8_2:+52682377 | None:intergenic |
| TGTAGCAAGTATTTAGGTTC+CGG | 0.422435 | 8_2:-52682339 | Msa1254580:CDS |
| ATGAGTGTCAATCGGAATCT+AGG | 0.428539 | 8_2:-52682140 | Msa1254580:CDS |
| CATGCATACCAATAAATCAA+TGG | 0.435349 | 8_2:+52682104 | None:intergenic |
| TCATCAATCCTCGGGGTCTT+CGG | 0.435935 | 8_2:+52682159 | None:intergenic |
| AGGAGAAAATCGAAGAAATC+TGG | 0.437025 | 8_2:-52682402 | Msa1254580:CDS |
| GTTCCGGATCGGGTGCTGGT+AGG | 0.437816 | 8_2:-52682323 | Msa1254580:CDS |
| AACCCTACCAGCACCCGATC+CGG | 0.442788 | 8_2:+52682320 | None:intergenic |
| TCTCTAGCCGAGAGCGATCT+GGG | 0.449797 | 8_2:+52680784 | None:intergenic |
| GGCTTTCGCTTCTCGTTGCA+TGG | 0.455004 | 8_2:-52680504 | Msa1254580:CDS |
| AAGTATTTAGGTTCCGGATC+GGG | 0.456904 | 8_2:-52682333 | Msa1254580:CDS |
| TTCCAGCAGGGGTGATGGGA+AGG | 0.459187 | 8_2:-52680642 | Msa1254580:intron |
| TTAGGTTCCGGATCGGGTGC+TGG | 0.466871 | 8_2:-52682327 | Msa1254580:CDS |
| TCCACACCTAATTGGACATC+AGG | 0.472736 | 8_2:+52680250 | None:intergenic |
| TTCCGGATCGGGTGCTGGTA+GGG | 0.473174 | 8_2:-52682322 | Msa1254580:CDS |
| CTCCTCGTCCTTCTGAGCAT+TGG | 0.480952 | 8_2:-52680746 | Msa1254580:CDS |
| ATGCATACCAATAAATCAAT+GGG | 0.482096 | 8_2:+52682105 | None:intergenic |
| TGAGAGGGAAAATAGTGAAA+GGG | 0.483713 | 8_2:+52682682 | None:intergenic |
| AGAAATACTTACCACAGAAA+AGG | 0.486065 | 8_2:+52680723 | None:intergenic |
| ACGACGACGGAGAAAAGAAA+AGG | 0.486371 | 8_2:-52682426 | Msa1254580:CDS |
| TTTGAATTTGGAGAAGAATG+AGG | 0.487276 | 8_2:-52682265 | Msa1254580:CDS |
| ATTGACACTCATCAATCCTC+GGG | 0.488809 | 8_2:+52682151 | None:intergenic |
| TAGAAGCCACTGATTTGCAC+TGG | 0.490297 | 8_2:+52680459 | None:intergenic |
| GGGGTGATGGGAAGGGACTA+AGG | 0.492038 | 8_2:-52680634 | Msa1254580:CDS |
| GAATGAGGGTCATGAAGGTA+AGG | 0.502404 | 8_2:-52682250 | Msa1254580:CDS |
| TCCAATTAGGTGTGGAGGGT+CGG | 0.507458 | 8_2:-52680243 | Msa1254580:three_prime_UTR |
| TAAAGTTTCTGAGATGCGAC+AGG | 0.519219 | 8_2:-52680552 | Msa1254580:CDS |
| TCCAGCAGGGGTGATGGGAA+GGG | 0.519254 | 8_2:-52680641 | Msa1254580:intron |
| TTAAACAGAGTAGTTCTGTT+GGG | 0.526691 | 8_2:-52682185 | Msa1254580:CDS |
| TGATGTCCAATTAGGTGTGG+AGG | 0.538552 | 8_2:-52680248 | Msa1254580:three_prime_UTR |
| GTGAGAGGGAAAATAGTGAA+AGG | 0.539308 | 8_2:+52682681 | None:intergenic |
| CTGGAACCCTAGCTCAGCTT+CGG | 0.543663 | 8_2:-52682362 | Msa1254580:CDS |
| GTTAAACAGAGTAGTTCTGT+TGG | 0.544516 | 8_2:-52682186 | Msa1254580:CDS |
| CTCTGTTTAACCAAATTCAC+CGG | 0.544759 | 8_2:+52682198 | None:intergenic |
| TGCTACACCGAAGCTGAGCT+AGG | 0.545459 | 8_2:+52682355 | None:intergenic |
| AGAAAAGGCCAATGCTCAGA+AGG | 0.546721 | 8_2:+52680738 | None:intergenic |
| GAGGATTGATGAGTGTCAAT+CGG | 0.547013 | 8_2:-52682148 | Msa1254580:CDS |
| GAGAGGGAAAATAGTGAAAG+GGG | 0.547093 | 8_2:+52682683 | None:intergenic |
| AGAAGCCACTGATTTGCACT+GGG | 0.548581 | 8_2:+52680460 | None:intergenic |
| GAGGTGCTTTAGGTGTATGC+GGG | 0.548835 | 8_2:+52680603 | None:intergenic |
| TTGAATTTGGAGAAGAATGA+GGG | 0.549112 | 8_2:-52682264 | Msa1254580:CDS |
| CACCTAAAGCACCTCGTCAT+GGG | 0.557635 | 8_2:-52680595 | Msa1254580:CDS |
| GATTGACACTCATCAATCCT+CGG | 0.558517 | 8_2:+52682150 | None:intergenic |
| GAGAAGAATGAGGGTCATGA+AGG | 0.559177 | 8_2:-52682255 | Msa1254580:CDS |
| CGACGACGGAGAAAAGAAAA+GGG | 0.561832 | 8_2:-52682425 | Msa1254580:CDS |
| ATACTACCCCAGATCGCTCT+CGG | 0.562173 | 8_2:-52680791 | Msa1254580:CDS |
| CAAGTATTTAGGTTCCGGAT+CGG | 0.563636 | 8_2:-52682334 | Msa1254580:CDS |
| AAAAGAACTATACAAAGTGA+AGG | 0.563764 | 8_2:+52680353 | None:intergenic |
| ACACCTAAAGCACCTCGTCA+TGG | 0.564528 | 8_2:-52680596 | Msa1254580:CDS |
| CGAGGTGCTTTAGGTGTATG+CGG | 0.574471 | 8_2:+52680602 | None:intergenic |
| CTGTGAAGATGAACTATGCA+AGG | 0.576710 | 8_2:-52680423 | Msa1254580:CDS |
| GGTACCAAGTATTTGAAACC+TGG | 0.579551 | 8_2:-52682381 | Msa1254580:CDS |
| ATCAGAGAGAGAAAGTGAGA+GGG | 0.581129 | 8_2:+52682667 | None:intergenic |
| TGGGGCTTTGGTATAACTGA+TGG | 0.587167 | 8_2:+52680479 | None:intergenic |
| AATCAGAGAGAGAAAGTGAG+AGG | 0.591022 | 8_2:+52682666 | None:intergenic |
| TTAAGGCGAGAAGGAGGTCG+AGG | 0.593863 | 8_2:+52680572 | None:intergenic |
| TCCTGATGTCCAATTAGGTG+TGG | 0.597945 | 8_2:-52680251 | Msa1254580:three_prime_UTR |
| AAAGAACTATACAAAGTGAA+GGG | 0.602512 | 8_2:+52680354 | None:intergenic |
| AAGTCCGCTGATGCTTTCGC+CGG | 0.607611 | 8_2:-52682217 | Msa1254580:CDS |
| GATGTCCAATTAGGTGTGGA+GGG | 0.608811 | 8_2:-52680247 | Msa1254580:three_prime_UTR |
| GCTACACCGAAGCTGAGCTA+GGG | 0.609640 | 8_2:+52682356 | None:intergenic |
| TCAGAAACTTTAAGGCGAGA+AGG | 0.612804 | 8_2:+52680563 | None:intergenic |
| TTCACCGGCGAAAGCATCAG+CGG | 0.630148 | 8_2:+52682213 | None:intergenic |
| GGAGGTCGAGGCCCATGACG+AGG | 0.634443 | 8_2:+52680584 | None:intergenic |
| GGCCAATGCTCAGAAGGACG+AGG | 0.635262 | 8_2:+52680744 | None:intergenic |
| GAAACTTTAAGGCGAGAAGG+AGG | 0.650069 | 8_2:+52680566 | None:intergenic |
| AAAGCCCCAGTGCAAATCAG+TGG | 0.650092 | 8_2:-52680465 | Msa1254580:CDS |
| AATGGGGAAAGTGACGACGA+CGG | 0.651856 | 8_2:-52682439 | Msa1254580:CDS |
| CGACGGAGAAAAGAAAAGGG+AGG | 0.678044 | 8_2:-52682422 | Msa1254580:CDS |
| CTCTAGCCGAGAGCGATCTG+GGG | 0.679113 | 8_2:+52680785 | None:intergenic |
| GAAGCCACTGATTTGCACTG+GGG | 0.689916 | 8_2:+52680461 | None:intergenic |
| TGATTCAATTCAATTCAATG+GGG | 0.690978 | 8_2:-52682455 | Msa1254580:exon |
| TTGGGACGCCGAAGACCCCG+AGG | 0.698934 | 8_2:-52682167 | Msa1254580:CDS |
| TTGACACTCATCAATCCTCG+GGG | 0.722658 | 8_2:+52682152 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTATGATAAGTATC+TGG | - | chr8_2:52680835-52680854 | Msa1254580:intron | 15.0% |
| !! | AATTAATTATGAAGCATATA+AGG | - | chr8_2:52681607-52681626 | Msa1254580:intron | 15.0% |
| !! | ATCAATTGAATATAGTAAAA+TGG | + | chr8_2:52681723-52681742 | None:intergenic | 15.0% |
| !! | AAAAAATTGGAGATTGAAAA+TGG | + | chr8_2:52680212-52680231 | None:intergenic | 20.0% |
| !!! | TTCTTGTTCTTGTTTTTTTA+GGG | - | chr8_2:52680341-52680360 | Msa1254580:three_prime_UTR | 20.0% |
| !!! | TTGTTTTTTTTTTTGGCATT+TGG | - | chr8_2:52680807-52680826 | Msa1254580:CDS | 20.0% |
| !!! | TATTCAATTTTCAACCTTAT+AGG | - | chr8_2:52681047-52681066 | Msa1254580:intron | 20.0% |
| !! | AATATCTAGACTAATTTGAT+GGG | + | chr8_2:52681184-52681203 | None:intergenic | 20.0% |
| !! | TAATATCTAGACTAATTTGA+TGG | + | chr8_2:52681185-52681204 | None:intergenic | 20.0% |
| !!! | ATCAAATTAGTCTAGATATT+AGG | - | chr8_2:52681184-52681203 | Msa1254580:intron | 20.0% |
| !! | TCAAATTATGAAAGAAAATG+GGG | + | chr8_2:52681810-52681829 | None:intergenic | 20.0% |
| !! | CTCAAATTATGAAAGAAAAT+GGG | + | chr8_2:52681811-52681830 | None:intergenic | 20.0% |
| ! | ACTCACATGAAGAAAAAAAT+TGG | + | chr8_2:52680225-52680244 | None:intergenic | 25.0% |
| !!! | GTTCTTGTTCTTGTTTTTTT+AGG | - | chr8_2:52680340-52680359 | Msa1254580:three_prime_UTR | 25.0% |
| ! | CTGATTCAATTCAATTCAAT+GGG | - | chr8_2:52680377-52680396 | Msa1254580:three_prime_UTR | 25.0% |
| ! | TGATTCAATTCAATTCAATG+GGG | - | chr8_2:52680378-52680397 | Msa1254580:exon | 25.0% |
| ! | ATGCATACCAATAAATCAAT+GGG | + | chr8_2:52680731-52680750 | None:intergenic | 25.0% |
| ! | ATTTAATTACTCGCGATTAA+TGG | - | chr8_2:52680768-52680787 | Msa1254580:CDS | 25.0% |
| !!! | GTCGAACTTGTTTTTTTTTT+TGG | - | chr8_2:52680800-52680819 | Msa1254580:CDS | 25.0% |
| ! | ATGATAAGTATCTGGATTAA+AGG | - | chr8_2:52680843-52680862 | Msa1254580:intron | 25.0% |
| !! | TTAAAATGATTGTCCTTTTG+TGG | - | chr8_2:52680880-52680899 | Msa1254580:intron | 25.0% |
| ! | GTTGATATTGTGGAATATTA+GGG | - | chr8_2:52680905-52680924 | Msa1254580:intron | 25.0% |
| ! | AGACAAAAAAACATGAGAAA+AGG | + | chr8_2:52681089-52681108 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTGTCTTGTTCA+TGG | - | chr8_2:52681095-52681114 | Msa1254580:intron | 25.0% |
| !!! | TGGTTTTTGAGTGTTAATAT+TGG | - | chr8_2:52681115-52681134 | Msa1254580:intron | 25.0% |
| !!! | GGTTTTTGAGTGTTAATATT+GGG | - | chr8_2:52681116-52681135 | Msa1254580:intron | 25.0% |
| !!! | GTTTTTGAGTGTTAATATTG+GGG | - | chr8_2:52681117-52681136 | Msa1254580:intron | 25.0% |
| ! | ACATAGAATCTTCAAAATCA+GGG | + | chr8_2:52681146-52681165 | None:intergenic | 25.0% |
| ! | TTAGTCTAGATATTAGGTTA+AGG | - | chr8_2:52681190-52681209 | Msa1254580:intron | 25.0% |
| !!! | TTTTTTAGTATTTGCCTTTG+TGG | - | chr8_2:52681329-52681348 | Msa1254580:intron | 25.0% |
| !!! | TTTTTAGTATTTGCCTTTGT+GGG | - | chr8_2:52681330-52681349 | Msa1254580:intron | 25.0% |
| !!! | GTGTTTTTGATTGTTTTGAT+TGG | - | chr8_2:52681576-52681595 | Msa1254580:intron | 25.0% |
| ! | CCTCAAATTATGAAAGAAAA+TGG | + | chr8_2:52681812-52681831 | None:intergenic | 25.0% |
| !! | CCATTTTCTTTCATAATTTG+AGG | - | chr8_2:52681809-52681828 | Msa1254580:intron | 25.0% |
| !! | TTCTAATTCTTTGAGAAACA+TGG | + | chr8_2:52681881-52681900 | None:intergenic | 25.0% |
| !! | CTAACTTTTGTAGTGTTTTT+AGG | - | chr8_2:52681989-52682008 | Msa1254580:intron | 25.0% |
| ! | AGACATGATTTAAAAATCAC+AGG | + | chr8_2:52682152-52682171 | None:intergenic | 25.0% |
| ! | AAAGAACTATACAAAGTGAA+GGG | + | chr8_2:52682482-52682501 | None:intergenic | 25.0% |
| ! | AAAAGAACTATACAAAGTGA+AGG | + | chr8_2:52682483-52682502 | None:intergenic | 25.0% |
| !!! | CACTTTGTATAGTTCTTTTT+TGG | - | chr8_2:52682484-52682503 | Msa1254580:intron | 25.0% |
| TTCAAAACGCATGAAGAAAA+AGG | + | chr8_2:52680253-52680272 | None:intergenic | 30.0% | |
| ! | GCTGATTCAATTCAATTCAA+TGG | - | chr8_2:52680376-52680395 | Msa1254580:three_prime_UTR | 30.0% |
| GTAGGGTTTGTAATGATATT+GGG | - | chr8_2:52680528-52680547 | Msa1254580:CDS | 30.0% | |
| ! | AAGAGTTGAGCTTTTGAATT+TGG | - | chr8_2:52680556-52680575 | Msa1254580:CDS | 30.0% |
| TTTGAATTTGGAGAAGAATG+AGG | - | chr8_2:52680568-52680587 | Msa1254580:CDS | 30.0% | |
| TTGAATTTGGAGAAGAATGA+GGG | - | chr8_2:52680569-52680588 | Msa1254580:CDS | 30.0% | |
| ! | TTAAACAGAGTAGTTCTGTT+GGG | - | chr8_2:52680648-52680667 | Msa1254580:intron | 30.0% |
| CATGCATACCAATAAATCAA+TGG | + | chr8_2:52680732-52680751 | None:intergenic | 30.0% | |
| TGGATTAAAGGTTGAGAATT+GGG | - | chr8_2:52680855-52680874 | Msa1254580:intron | 30.0% | |
| CGTTGATATTGTGGAATATT+AGG | - | chr8_2:52680904-52680923 | Msa1254580:intron | 30.0% | |
| TCAAGAATCACAATCCTATA+AGG | + | chr8_2:52681064-52681083 | None:intergenic | 30.0% | |
| CACATAGAATCTTCAAAATC+AGG | + | chr8_2:52681147-52681166 | None:intergenic | 30.0% | |
| !! | CTGATTTTGAAGATTCTATG+TGG | - | chr8_2:52681145-52681164 | Msa1254580:intron | 30.0% |
| !!! | AGGGAAATACTGTTTTGTTT+TGG | - | chr8_2:52681420-52681439 | Msa1254580:intron | 30.0% |
| ! | TCCTTTTAGATGAATTGAAG+TGG | - | chr8_2:52681947-52681966 | Msa1254580:intron | 30.0% |
| ACCACTTCAATTCATCTAAA+AGG | + | chr8_2:52681951-52681970 | None:intergenic | 30.0% | |
| !!! | GTAGTGTTTTTAGGTTATTG+TGG | - | chr8_2:52681998-52682017 | Msa1254580:intron | 30.0% |
| AGAAATACTTACCACAGAAA+AGG | + | chr8_2:52682113-52682132 | None:intergenic | 30.0% | |
| AATCACAGGAAAGAGATAAT+TGG | + | chr8_2:52682138-52682157 | None:intergenic | 30.0% | |
| !!! | TGCTATAATTTTTTTCCAGC+AGG | - | chr8_2:52682178-52682197 | Msa1254580:CDS | 30.0% |
| !!! | GCTATAATTTTTTTCCAGCA+GGG | - | chr8_2:52682179-52682198 | Msa1254580:CDS | 30.0% |
| !!! | CTATAATTTTTTTCCAGCAG+GGG | - | chr8_2:52682180-52682199 | Msa1254580:CDS | 30.0% |
| ! | TACAATTTTGTAGTCTGTGT+TGG | - | chr8_2:52682535-52682554 | Msa1254580:intron | 30.0% |
| ! | ACAATTTTGTAGTCTGTGTT+GGG | - | chr8_2:52682536-52682555 | Msa1254580:intron | 30.0% |
| TGAGAGGGAAAATAGTGAAA+GGG | + | chr8_2:52680154-52680173 | None:intergenic | 35.0% | |
| TCACTTTCTCTCTCTGATTT+AGG | - | chr8_2:52680171-52680190 | Msa1254580:three_prime_UTR | 35.0% | |
| CACTTTCTCTCTCTGATTTA+GGG | - | chr8_2:52680172-52680191 | Msa1254580:three_prime_UTR | 35.0% | |
| AGGAGAAAATCGAAGAAATC+TGG | - | chr8_2:52680431-52680450 | Msa1254580:CDS | 35.0% | |
| ! | TGTAGCAAGTATTTAGGTTC+CGG | - | chr8_2:52680494-52680513 | Msa1254580:CDS | 35.0% |
| GGTAGGGTTTGTAATGATAT+TGG | - | chr8_2:52680527-52680546 | Msa1254580:CDS | 35.0% | |
| CTCTGTTTAACCAAATTCAC+CGG | + | chr8_2:52680638-52680657 | None:intergenic | 35.0% | |
| ! | GTTAAACAGAGTAGTTCTGT+TGG | - | chr8_2:52680647-52680666 | Msa1254580:intron | 35.0% |
| !! | GTCTCTTCCCATTGATTTAT+TGG | - | chr8_2:52680721-52680740 | Msa1254580:intron | 35.0% |
| CTGGATTAAAGGTTGAGAAT+TGG | - | chr8_2:52680854-52680873 | Msa1254580:intron | 35.0% | |
| ACAATATCAACGACCACAAA+AGG | + | chr8_2:52680896-52680915 | None:intergenic | 35.0% | |
| ! | TTTTGTGGTCGTTGATATTG+TGG | - | chr8_2:52680895-52680914 | Msa1254580:intron | 35.0% |
| ACACAAGCAAGAATAAACAG+AGG | + | chr8_2:52681478-52681497 | None:intergenic | 35.0% | |
| ! | GCTTGTGTTTGTTGATTGTA+TGG | - | chr8_2:52681490-52681509 | Msa1254580:intron | 35.0% |
| AAACAGCTCTCAATTGATCA+TGG | + | chr8_2:52681857-52681876 | None:intergenic | 35.0% | |
| TCATAGTCATATAAGCAGCA+GGG | + | chr8_2:52681924-52681943 | None:intergenic | 35.0% | |
| TTCATAGTCATATAAGCAGC+AGG | + | chr8_2:52681925-52681944 | None:intergenic | 35.0% | |
| !!! | GTTTTTAGGTTATTGTGGCA+AGG | - | chr8_2:52682003-52682022 | Msa1254580:intron | 35.0% |
| !! | AGCTGTTCTTTTCAAGGAAT+CGG | - | chr8_2:52682308-52682327 | Msa1254580:CDS | 35.0% |
| !!! | TTTTGGTTTCTAGTGAATGC+TGG | - | chr8_2:52682501-52682520 | Msa1254580:intron | 35.0% |
| ! | CAATTTTGTAGTCTGTGTTG+GGG | - | chr8_2:52682537-52682556 | Msa1254580:intron | 35.0% |
| ! | AATTTTGTAGTCTGTGTTGG+GGG | - | chr8_2:52682538-52682557 | Msa1254580:intron | 35.0% |
| GATATTCCTGATGTCCAATT+AGG | - | chr8_2:52682577-52682596 | Msa1254580:intron | 35.0% | |
| GAGAGGGAAAATAGTGAAAG+GGG | + | chr8_2:52680153-52680172 | None:intergenic | 40.0% | |
| GTGAGAGGGAAAATAGTGAA+AGG | + | chr8_2:52680155-52680174 | None:intergenic | 40.0% | |
| ATCAGAGAGAGAAAGTGAGA+GGG | + | chr8_2:52680169-52680188 | None:intergenic | 40.0% | |
| AATCAGAGAGAGAAAGTGAG+AGG | + | chr8_2:52680170-52680189 | None:intergenic | 40.0% | |
| ! | GGTACCAAGTATTTGAAACC+TGG | - | chr8_2:52680452-52680471 | Msa1254580:CDS | 40.0% |
| GGTTCCAGGTTTCAAATACT+TGG | + | chr8_2:52680459-52680478 | None:intergenic | 40.0% | |
| ! | CTTCGGTGTAGCAAGTATTT+AGG | - | chr8_2:52680488-52680507 | Msa1254580:CDS | 40.0% |
| ! | CAAGTATTTAGGTTCCGGAT+CGG | - | chr8_2:52680499-52680518 | Msa1254580:CDS | 40.0% |
| ! | AAGTATTTAGGTTCCGGATC+GGG | - | chr8_2:52680500-52680519 | Msa1254580:CDS | 40.0% |
| ATTGACACTCATCAATCCTC+GGG | + | chr8_2:52680685-52680704 | None:intergenic | 40.0% | |
| GATTGACACTCATCAATCCT+CGG | + | chr8_2:52680686-52680705 | None:intergenic | 40.0% | |
| GAGGATTGATGAGTGTCAAT+CGG | - | chr8_2:52680685-52680704 | Msa1254580:intron | 40.0% | |
| ATGAGTGTCAATCGGAATCT+AGG | - | chr8_2:52680693-52680712 | Msa1254580:intron | 40.0% | |
| ATTAGGGTCAGCTGTAATTG+CGG | - | chr8_2:52680921-52680940 | Msa1254580:intron | 40.0% | |
| ! | AGGCAGCAACATCAAGATTT+TGG | + | chr8_2:52680962-52680981 | None:intergenic | 40.0% |
| ACTGCAAGTGATCTCAACAA+AGG | + | chr8_2:52681015-52681034 | None:intergenic | 40.0% | |
| CAAATCACTGAAACCCACAA+AGG | + | chr8_2:52681346-52681365 | None:intergenic | 40.0% | |
| TACTGTGATGAAGCACACAA+AGG | - | chr8_2:52681400-52681419 | Msa1254580:intron | 40.0% | |
| ACTGTGATGAAGCACACAAA+GGG | - | chr8_2:52681401-52681420 | Msa1254580:intron | 40.0% | |
| !! | TCAGAAACTTTAAGGCGAGA+AGG | + | chr8_2:52682273-52682292 | None:intergenic | 40.0% |
| GTCGCATCTCAGAAACTTTA+AGG | + | chr8_2:52682281-52682300 | None:intergenic | 40.0% | |
| !! | TAAAGTTTCTGAGATGCGAC+AGG | - | chr8_2:52682281-52682300 | Msa1254580:CDS | 40.0% |
| ! | GGTTACAGCTGTTCTTTTCA+AGG | - | chr8_2:52682302-52682321 | Msa1254580:CDS | 40.0% |
| CTGTGAAGATGAACTATGCA+AGG | - | chr8_2:52682410-52682429 | Msa1254580:CDS | 40.0% | |
| ACGACGACGGAGAAAAGAAA+AGG | - | chr8_2:52680407-52680426 | Msa1254580:CDS | 45.0% | |
| CGACGACGGAGAAAAGAAAA+GGG | - | chr8_2:52680408-52680427 | Msa1254580:CDS | 45.0% | |
| GAGAAGAATGAGGGTCATGA+AGG | - | chr8_2:52680578-52680597 | Msa1254580:CDS | 45.0% | |
| GAATGAGGGTCATGAAGGTA+AGG | - | chr8_2:52680583-52680602 | Msa1254580:CDS | 45.0% | |
| TTGACACTCATCAATCCTCG+GGG | + | chr8_2:52680684-52680703 | None:intergenic | 45.0% | |
| GATGTTGCTGCCTCAAATTG+CGG | - | chr8_2:52680969-52680988 | Msa1254580:intron | 45.0% | |
| CTCTCAATTGATCATGGTGC+AGG | + | chr8_2:52681851-52681870 | None:intergenic | 45.0% | |
| AGAAAAGGCCAATGCTCAGA+AGG | + | chr8_2:52682098-52682117 | None:intergenic | 45.0% | |
| !!! | TTTTTTTCCAGCAGGGGTGA+TGG | - | chr8_2:52682186-52682205 | Msa1254580:CDS | 45.0% |
| !!! | TTTTTTCCAGCAGGGGTGAT+GGG | - | chr8_2:52682187-52682206 | Msa1254580:CDS | 45.0% |
| !! | GAAACTTTAAGGCGAGAAGG+AGG | + | chr8_2:52682270-52682289 | None:intergenic | 45.0% |
| ! | TGGGGCTTTGGTATAACTGA+TGG | + | chr8_2:52682357-52682376 | None:intergenic | 45.0% |
| !! | AGAAGCCACTGATTTGCACT+GGG | + | chr8_2:52682376-52682395 | None:intergenic | 45.0% |
| !! | TAGAAGCCACTGATTTGCAC+TGG | + | chr8_2:52682377-52682396 | None:intergenic | 45.0% |
| TCCTGATGTCCAATTAGGTG+TGG | - | chr8_2:52682582-52682601 | Msa1254580:intron | 45.0% | |
| TCCACACCTAATTGGACATC+AGG | + | chr8_2:52682586-52682605 | None:intergenic | 45.0% | |
| TGATGTCCAATTAGGTGTGG+AGG | - | chr8_2:52682585-52682604 | Msa1254580:intron | 45.0% | |
| GATGTCCAATTAGGTGTGGA+GGG | - | chr8_2:52682586-52682605 | Msa1254580:intron | 45.0% | |
| AATGGGGAAAGTGACGACGA+CGG | - | chr8_2:52680394-52680413 | Msa1254580:exon | 50.0% | |
| CGACGGAGAAAAGAAAAGGG+AGG | - | chr8_2:52680411-52680430 | Msa1254580:CDS | 50.0% | |
| GATGCTTTCGCCGGTGAATT+TGG | - | chr8_2:52680625-52680644 | Msa1254580:CDS | 50.0% | |
| TCATCAATCCTCGGGGTCTT+CGG | + | chr8_2:52680677-52680696 | None:intergenic | 50.0% | |
| CGATCCATAGCCGCAATTTG+AGG | + | chr8_2:52680982-52681001 | None:intergenic | 50.0% | |
| ATACTACCCCAGATCGCTCT+CGG | - | chr8_2:52682042-52682061 | Msa1254580:intron | 50.0% | |
| !!! | CTGAGCATTGGCCTTTTCTG+TGG | - | chr8_2:52682099-52682118 | Msa1254580:intron | 50.0% |
| ! | GAGGTGCTTTAGGTGTATGC+GGG | + | chr8_2:52682233-52682252 | None:intergenic | 50.0% |
| ! | CGAGGTGCTTTAGGTGTATG+CGG | + | chr8_2:52682234-52682253 | None:intergenic | 50.0% |
| ! | ACACCTAAAGCACCTCGTCA+TGG | - | chr8_2:52682237-52682256 | Msa1254580:CDS | 50.0% |
| ! | CACCTAAAGCACCTCGTCAT+GGG | - | chr8_2:52682238-52682257 | Msa1254580:CDS | 50.0% |
| !! | ACTGATTTGCACTGGGGCTT+TGG | + | chr8_2:52682369-52682388 | None:intergenic | 50.0% |
| AAAGCCCCAGTGCAAATCAG+TGG | - | chr8_2:52682368-52682387 | Msa1254580:CDS | 50.0% | |
| !! | GAAGCCACTGATTTGCACTG+GGG | + | chr8_2:52682375-52682394 | None:intergenic | 50.0% |
| TCCAATTAGGTGTGGAGGGT+CGG | - | chr8_2:52682590-52682609 | Msa1254580:intron | 50.0% | |
| CTGGAACCCTAGCTCAGCTT+CGG | - | chr8_2:52680471-52680490 | Msa1254580:CDS | 55.0% | |
| GCTACACCGAAGCTGAGCTA+GGG | + | chr8_2:52680480-52680499 | None:intergenic | 55.0% | |
| TGCTACACCGAAGCTGAGCT+AGG | + | chr8_2:52680481-52680500 | None:intergenic | 55.0% | |
| AAGTCCGCTGATGCTTTCGC+CGG | - | chr8_2:52680616-52680635 | Msa1254580:CDS | 55.0% | |
| !! | TTCACCGGCGAAAGCATCAG+CGG | + | chr8_2:52680623-52680642 | None:intergenic | 55.0% |
| GCTGCCTCAAATTGCGGCTA+TGG | - | chr8_2:52680975-52680994 | Msa1254580:intron | 55.0% | |
| TCTCTAGCCGAGAGCGATCT+GGG | + | chr8_2:52682052-52682071 | None:intergenic | 55.0% | |
| ATCTCTAGCCGAGAGCGATC+TGG | + | chr8_2:52682053-52682072 | None:intergenic | 55.0% | |
| CTCCTCGTCCTTCTGAGCAT+TGG | - | chr8_2:52682087-52682106 | Msa1254580:intron | 55.0% | |
| ! | GCTTTAGGTGTATGCGGGCT+TGG | + | chr8_2:52682228-52682247 | None:intergenic | 55.0% |
| TTAAGGCGAGAAGGAGGTCG+AGG | + | chr8_2:52682264-52682283 | None:intergenic | 55.0% | |
| GGCTTTCGCTTCTCGTTGCA+TGG | - | chr8_2:52682329-52682348 | Msa1254580:CDS | 55.0% | |
| TGTGTTGGGGGCAGTTTAGC+TGG | - | chr8_2:52682550-52682569 | Msa1254580:intron | 55.0% | |
| TGGGGGCAGTTTAGCTGGTA+TGG | - | chr8_2:52682555-52682574 | Msa1254580:intron | 55.0% | |
| CGAAGCTGAGCTAGGGTTCC+AGG | + | chr8_2:52680473-52680492 | None:intergenic | 60.0% | |
| TTAGGTTCCGGATCGGGTGC+TGG | - | chr8_2:52680506-52680525 | Msa1254580:CDS | 60.0% | |
| !! | TTCCGGATCGGGTGCTGGTA+GGG | - | chr8_2:52680511-52680530 | Msa1254580:CDS | 60.0% |
| AACCCTACCAGCACCCGATC+CGG | + | chr8_2:52680516-52680535 | None:intergenic | 60.0% | |
| CTCTAGCCGAGAGCGATCTG+GGG | + | chr8_2:52682051-52682070 | None:intergenic | 60.0% | |
| GGCCAATGCTCAGAAGGACG+AGG | + | chr8_2:52682092-52682111 | None:intergenic | 60.0% | |
| !! | TTCCAGCAGGGGTGATGGGA+AGG | - | chr8_2:52682191-52682210 | Msa1254580:CDS | 60.0% |
| !! | TCCAGCAGGGGTGATGGGAA+GGG | - | chr8_2:52682192-52682211 | Msa1254580:CDS | 60.0% |
| !! | GGGGTGATGGGAAGGGACTA+AGG | - | chr8_2:52682199-52682218 | Msa1254580:CDS | 60.0% |
| ! | GGCCCATGACGAGGTGCTTT+AGG | + | chr8_2:52682243-52682262 | None:intergenic | 60.0% |
| GCCGACCCTCCACACCTAAT+TGG | + | chr8_2:52682594-52682613 | None:intergenic | 60.0% | |
| !! | GTTCCGGATCGGGTGCTGGT+AGG | - | chr8_2:52680510-52680529 | Msa1254580:CDS | 65.0% |
| TCCCTTCCCATCACCCCTGC+TGG | + | chr8_2:52682196-52682215 | None:intergenic | 65.0% | |
| TTGGGACGCCGAAGACCCCG+AGG | - | chr8_2:52680666-52680685 | Msa1254580:intron | 70.0% | |
| GGAGGTCGAGGCCCATGACG+AGG | + | chr8_2:52682252-52682271 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 52680148 | 52682707 | 52680148 | ID=Msa1254580;Name=Msa1254580 |
| chr8_2 | mRNA | 52680148 | 52682707 | 52680148 | ID=Msa1254580-mRNA-1;Parent=Msa1254580;Name=Msa1254580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|0.66|1|1|0.66|0.75|4|249|238 |
| chr8_2 | exon | 52680148 | 52680655 | 52680148 | ID=Msa1254580-mRNA-1:exon:16179;Parent=Msa1254580-mRNA-1 |
| chr8_2 | exon | 52680735 | 52680844 | 52680735 | ID=Msa1254580-mRNA-1:exon:16178;Parent=Msa1254580-mRNA-1 |
| chr8_2 | exon | 52682113 | 52682493 | 52682113 | ID=Msa1254580-mRNA-1:exon:16177;Parent=Msa1254580-mRNA-1 |
| chr8_2 | exon | 52682617 | 52682707 | 52682617 | ID=Msa1254580-mRNA-1:exon:16176;Parent=Msa1254580-mRNA-1 |
| chr8_2 | five_prime_UTR | 52682617 | 52682707 | 52682617 | ID=Msa1254580-mRNA-1:five_prime_utr;Parent=Msa1254580-mRNA-1 |
| chr8_2 | five_prime_UTR | 52682461 | 52682493 | 52682461 | ID=Msa1254580-mRNA-1:five_prime_utr;Parent=Msa1254580-mRNA-1 |
| chr8_2 | CDS | 52682113 | 52682460 | 52682113 | ID=Msa1254580-mRNA-1:cds;Parent=Msa1254580-mRNA-1 |
| chr8_2 | CDS | 52680735 | 52680844 | 52680735 | ID=Msa1254580-mRNA-1:cds;Parent=Msa1254580-mRNA-1 |
| chr8_2 | CDS | 52680397 | 52680655 | 52680397 | ID=Msa1254580-mRNA-1:cds;Parent=Msa1254580-mRNA-1 |
| chr8_2 | three_prime_UTR | 52680148 | 52680396 | 52680148 | ID=Msa1254580-mRNA-1:three_prime_utr;Parent=Msa1254580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
