AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202900 MtrunA17_Chr8g0373351 87.220 313 18 1 202 514 1 291 0.0 544
Msa1202900 MtrunA17_Chr8g0373351 56.250 64 27 1 115 178 224 286 1.50e-12 68.2
Msa1202900 MtrunA17_Chr8g0373001 52.369 401 99 9 191 514 24 409 3.82e-115 346
Msa1202900 MtrunA17_Chr8g0373001 38.710 186 105 4 1 178 220 404 7.03e-26 109
Msa1202900 MtrunA17_Chr8g0373001 71.831 71 16 2 1 68 1 70 1.11e-22 100
Msa1202900 MtrunA17_Chr5g0404321 46.212 396 117 11 200 514 33 413 2.12e-96 298
Msa1202900 MtrunA17_Chr5g0404321 40.764 157 83 4 31 178 253 408 1.44e-22 100
Msa1202900 MtrunA17_Chr5g0404321 54.795 73 27 3 1 68 1 72 1.20e-12 69.7
Msa1202900 MtrunA17_Chr8g0373331 52.632 342 102 10 200 508 32 346 8.30e-96 294
Msa1202900 MtrunA17_Chr8g0373331 68.571 70 19 2 1 68 1 69 8.91e-20 90.9
Msa1202900 MtrunA17_Chr8g0373331 53.000 100 41 3 82 176 247 345 3.88e-19 89.0
Msa1202900 MtrunA17_Chr8g0373361 45.735 422 110 12 188 509 2 404 9.30e-90 281
Msa1202900 MtrunA17_Chr8g0373361 74.627 67 12 3 1 66 11 73 7.95e-21 94.7
Msa1202900 MtrunA17_Chr1g0155301 38.333 360 137 7 223 514 77 419 2.27e-61 207
Msa1202900 MtrunA17_Chr1g0155301 56.818 88 37 1 91 178 328 414 8.88e-21 94.7
Msa1202900 MtrunA17_Chr2g0286441 35.342 365 157 8 213 509 32 385 2.57e-54 187
Msa1202900 MtrunA17_Chr2g0286441 38.312 154 84 4 31 178 237 385 8.87e-17 82.4
Msa1202900 MtrunA17_Chr2g0278511 35.263 380 152 10 215 509 49 419 2.50e-53 186
Msa1202900 MtrunA17_Chr2g0278511 36.747 166 86 5 31 178 255 419 1.23e-16 82.0
Msa1202900 MtrunA17_Chr1g0196071 37.582 306 140 6 245 509 99 394 1.01e-49 176
Msa1202900 MtrunA17_Chr1g0196071 52.326 86 38 2 93 178 312 394 4.49e-16 80.1
Msa1202900 MtrunA17_Chr1g0201891 34.197 386 153 11 215 509 48 423 1.36e-49 176
Msa1202900 MtrunA17_Chr1g0201891 43.269 104 46 2 87 178 321 423 2.77e-15 78.2
Msa1202900 MtrunA17_Chr8g0373341 40.379 317 150 8 202 507 32 320 1.70e-48 170
Msa1202900 MtrunA17_Chr8g0373341 69.072 97 30 0 81 177 225 321 2.41e-38 142
Msa1202900 MtrunA17_Chr8g0373341 60.606 66 25 1 1 66 1 65 8.44e-15 75.5
Msa1202900 MtrunA17_Chr2g0315641 34.625 387 144 14 196 509 13 363 5.06e-44 159
Msa1202900 MtrunA17_Chr2g0315641 48.980 98 49 1 81 178 267 363 2.85e-18 86.7
Msa1202900 MtrunA17_Chr2g0315651 31.053 380 155 12 200 509 17 359 6.51e-30 120
Msa1202900 MtrunA17_Chr2g0315651 48.276 87 42 2 94 178 274 359 1.06e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202900 AT2G18280.2 39.898 391 145 11 194 514 20 390 8.84e-70 229
Msa1202900 AT2G18280.2 51.163 86 41 1 93 178 301 385 8.94e-18 85.9
Msa1202900 AT2G18280.1 39.898 391 145 11 194 514 20 390 8.84e-70 229
Msa1202900 AT2G18280.1 51.163 86 41 1 93 178 301 385 8.94e-18 85.9
Msa1202900 AT1G47270.3 37.401 377 133 9 213 514 37 385 7.39e-59 200
Msa1202900 AT1G47270.3 37.086 151 85 3 31 178 237 380 2.86e-18 87.0
Msa1202900 AT1G47270.1 37.401 377 133 9 213 514 62 410 1.46e-58 200
Msa1202900 AT1G47270.1 37.086 151 85 3 31 178 262 405 5.50e-18 86.7
Msa1202900 AT1G47270.2 37.401 377 133 9 213 514 61 409 1.53e-58 199
Msa1202900 AT1G47270.2 37.086 151 85 3 31 178 261 404 5.66e-18 86.7
Msa1202900 AT1G25280.1 35.109 413 154 13 198 509 38 437 1.64e-55 192
Msa1202900 AT1G25280.1 46.392 97 40 2 93 178 342 437 1.92e-14 75.9
Msa1202900 AT2G47900.2 36.504 389 158 10 194 509 26 398 5.62e-55 190
Msa1202900 AT2G47900.2 51.163 86 39 2 93 178 316 398 1.75e-15 79.0
Msa1202900 AT2G47900.1 36.504 389 158 10 194 509 26 398 5.62e-55 190
Msa1202900 AT2G47900.1 51.163 86 39 2 93 178 316 398 1.75e-15 79.0
Msa1202900 AT2G47900.3 36.410 390 158 10 194 509 26 399 7.95e-55 189
Msa1202900 AT2G47900.3 51.163 86 39 2 93 178 317 399 1.84e-15 79.0
Msa1202900 AT1G76900.2 34.112 428 156 14 195 509 33 447 3.93e-49 176
Msa1202900 AT1G76900.2 42.574 101 43 2 93 178 347 447 5.17e-13 71.6
Msa1202900 AT1G76900.1 34.112 428 156 14 195 509 33 447 3.93e-49 176
Msa1202900 AT1G76900.1 42.574 101 43 2 93 178 347 447 5.17e-13 71.6
Msa1202900 AT1G76900.3 34.112 428 156 14 195 509 33 447 3.93e-49 176
Msa1202900 AT1G76900.3 42.574 101 43 2 93 178 347 447 5.17e-13 71.6
Msa1202900 AT5G18680.1 36.825 315 131 9 243 509 87 381 2.34e-47 169
Msa1202900 AT5G18680.1 48.352 91 40 3 93 178 293 381 1.00e-14 76.3
Msa1202900 AT3G06380.1 36.570 309 133 9 245 509 83 372 7.89e-46 165
Msa1202900 AT3G06380.1 52.326 86 37 3 93 178 291 372 1.09e-16 82.4
Msa1202900 AT1G43640.1 32.031 384 160 11 215 509 50 421 2.06e-44 162
Msa1202900 AT1G25280.3 41.339 254 107 8 290 509 14 259 2.56e-44 157
Msa1202900 AT1G25280.3 46.392 97 40 2 93 178 164 259 2.82e-15 76.6
Msa1202900 AT1G25280.2 41.339 254 107 8 290 509 14 259 2.56e-44 157
Msa1202900 AT1G25280.2 46.392 97 40 2 93 178 164 259 2.82e-15 76.6
Msa1202900 AT1G43640.2 34.242 330 140 9 245 509 38 355 9.14e-43 156
Msa1202900 AT5G18680.2 35.644 303 127 9 255 509 7 289 3.14e-42 153
Msa1202900 AT5G18680.2 48.352 91 40 3 93 178 201 289 2.67e-15 77.0
Msa1202900 AT3G06380.2 35.932 295 126 9 259 509 5 280 2.79e-41 150
Msa1202900 AT3G06380.2 52.326 86 37 3 93 178 199 280 3.54e-17 82.4
Msa1202900 AT1G53320.1 36.182 351 130 10 223 509 51 371 5.72e-41 152
Msa1202900 AT1G53320.1 55.294 85 37 1 94 178 288 371 5.27e-18 86.3

Find 132 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTGCTTCACTGAAAT+AGG 0.203520 8_1:+56602442 None:intergenic
ATCCGGCTTGATCGACAATT+TGG 0.228814 8_1:+56601656 None:intergenic
TTTCAGTTGTACTTAGGTTT+GGG 0.243955 8_1:-56602260 Msa1202900:CDS
ATGATGCAATGTATTCTTCT+TGG 0.252868 8_1:+56601527 None:intergenic
TTTCTCGTGCAGATCGAAAA+TGG 0.275180 8_1:-56604985 Msa1202900:CDS
AATGTCGATCGACAATTCTT+TGG 0.306084 8_1:+56601608 None:intergenic
CCCTGTTGAATAGGTTCAAC+TGG 0.307505 8_1:+56602571 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.320259 8_1:-56601173 Msa1202900:CDS
CCCTGTTGAATAGGTTCAAT+TGG 0.340120 8_1:+56605736 None:intergenic
AATTATGTCTAAAAGCAATT+CGG 0.348399 8_1:+56605693 None:intergenic
TCCAATTGAACCTATTCAAC+AGG 0.350379 8_1:-56605737 Msa1202900:CDS
ATCCGATGCAGTGCTTTATT+CGG 0.354028 8_1:-56602316 Msa1202900:CDS
GAACTTGTTGAGCCCAAAAC+TGG 0.355370 8_1:+56601721 None:intergenic
TCCAGTTGAACCTATTCAAC+AGG 0.356923 8_1:-56602572 Msa1202900:CDS
CTGTCTCAGCTATTCATAAA+GGG 0.367799 8_1:-56601493 Msa1202900:CDS
ACCCATTGTCCCTGTTGAAT+AGG 0.369804 8_1:+56602562 None:intergenic
GCCCATTGTCCCTGTTGAAT+AGG 0.377292 8_1:+56605727 None:intergenic
ACAATGGGTAAGTCTGCTTT+TGG 0.377762 8_1:-56602548 Msa1202900:CDS
ATATCTTATTATTAAATATC+CGG 0.379842 8_1:+56601639 None:intergenic
ATTACCCTTTCTTGCTCCTC+AGG 0.383783 8_1:+56601194 None:intergenic
CCAAGCCTTTGCCATCTGCT+TGG 0.383935 8_1:-56601105 Msa1202900:CDS
TCAAAAGCAAGGCTCCTAGA+TGG 0.387776 8_1:-56601325 Msa1202900:CDS
GTCAAAGTCACACATTGTTC+TGG 0.388147 8_1:-56605767 Msa1202900:CDS
GGTTGAACTGCAGCATCATC+TGG 0.388445 8_1:+56601677 None:intergenic
CCTGTCTCAGCTATTCATAA+AGG 0.399999 8_1:-56601494 Msa1202900:CDS
ATTATGTCTAAAAGCAATTC+GGG 0.401390 8_1:+56605694 None:intergenic
TTAGAATTGTACGTTTGTAT+TGG 0.401631 8_1:-56602668 Msa1202900:intron
GAAAGGGTAATCTTGCAGTT+TGG 0.408288 8_1:-56601182 Msa1202900:CDS
TCAGTCCTGGTAGCTCTGAT+TGG 0.423592 8_1:+56601363 None:intergenic
TCTTCTTGGCGAGTGGACTT+TGG 0.427811 8_1:+56601541 None:intergenic
GGCCACTCTGGCAGTTACTA+AGG 0.430230 8_1:-56604964 Msa1202900:CDS
TTAACACGCCCCATGACATC+AGG 0.446343 8_1:+56605064 None:intergenic
CATCGGATGATCACGGGGAC+CGG 0.448035 8_1:+56602331 None:intergenic
AAGAATTGTCGATCGACATT+CGG 0.455825 8_1:-56601605 Msa1202900:CDS
ACCTATTCAACAGGGACAAT+GGG 0.455866 8_1:-56602563 Msa1202900:CDS
ACCTATTCAACAGGGACAAT+GGG 0.456062 8_1:-56605728 Msa1202900:CDS
ATTCGAAGGGTGAGACATCT+TGG 0.459333 8_1:-56605673 Msa1202900:CDS
TAAAGGTATCGATCTGGCCT+TGG 0.459438 8_1:+56605137 None:intergenic
GGGTTGGCACCTAGACTTCA+AGG 0.460220 8_1:-56601288 Msa1202900:CDS
GAGGTAAAGATGTCAATGTC+AGG 0.460528 8_1:+56601462 None:intergenic
GAAAACGTTTCATCAGATAC+TGG 0.463759 8_1:+56601440 None:intergenic
TTAGTATAAAGGTATCGATC+TGG 0.471050 8_1:+56605131 None:intergenic
TTCTCCTTCGCCAACACTGA+AGG 0.471471 8_1:-56601420 Msa1202900:CDS
ATAAGTTTAGGGCGCGGAAA+AGG 0.480468 8_1:+56601076 None:intergenic
TGGTTGGTGCCCTGATGTCA+TGG 0.480715 8_1:-56605074 Msa1202900:CDS
TTGCACTGCTCATCCCATCT+AGG 0.486778 8_1:+56601311 None:intergenic
GAACAATGTGTGACTTTGAC+GGG 0.488703 8_1:+56605770 None:intergenic
AAGACAACAACAGCACGCAC+AGG 0.491476 8_1:+56605650 None:intergenic
TTTCTCCTGAGGAGCAAGAA+AGG 0.491680 8_1:-56601199 Msa1202900:CDS
TGGCGAGTGGACTTTGGAAA+TGG 0.496588 8_1:+56601547 None:intergenic
GGTTCAACTGGATTTACATC+GGG 0.497179 8_1:+56602583 None:intergenic
TAACACGTCCCTTGAAGTCT+AGG 0.498472 8_1:+56601279 None:intergenic
AAACAAGTCATTTAAAAGCA+TGG 0.499585 8_1:-56602617 Msa1202900:CDS
GCAGATGGCAAAGGCTTGGA+AGG 0.500254 8_1:+56601109 None:intergenic
CCTTTATGAATAGCTGAGAC+AGG 0.505478 8_1:+56601494 None:intergenic
GTGATCCTTTCTCTTTGCTG+AGG 0.510106 8_1:+56602469 None:intergenic
TTCAGTTGTACTTAGGTTTG+GGG 0.513779 8_1:-56602259 Msa1202900:CDS
GGTTGGTGCCCTGATGTCAT+GGG 0.515230 8_1:-56605073 Msa1202900:CDS
CTCCTTCGCCAACACTGAAG+GGG 0.516445 8_1:-56601418 Msa1202900:CDS
CCAAGCAGATGGCAAAGGCT+TGG 0.517089 8_1:+56601105 None:intergenic
TCAAGCAGATGGCAAAGGCT+TGG 0.517298 8_1:+56604888 None:intergenic
GCACTGCATCGGATGATCAC+GGG 0.519512 8_1:+56602325 None:intergenic
CAAAAGCAAGGCTCCTAGAT+GGG 0.521682 8_1:-56601324 Msa1202900:CDS
CAGATCGAAAATGGCCACTC+TGG 0.524777 8_1:-56604976 Msa1202900:CDS
GCAGATGGCAAAGGCTTGGA+AGG 0.525320 8_1:+56604892 None:intergenic
TCTCCTTCGCCAACACTGAA+GGG 0.525573 8_1:-56601419 Msa1202900:CDS
GTCAAGGGCTCACTCAGTCC+TGG 0.526580 8_1:+56601350 None:intergenic
GCAAGCCAATCAGAGCTACC+AGG 0.536157 8_1:-56601368 Msa1202900:CDS
ATCGGATGATCACGGGGACC+GGG 0.536395 8_1:+56602332 None:intergenic
ATCGATAAACAATGGCTACA+AGG 0.537056 8_1:+56605017 None:intergenic
AGAACAATGTGTGACTTTGA+CGG 0.539455 8_1:+56605769 None:intergenic
AACCTATTCAACAGGGACAA+TGG 0.542913 8_1:-56605729 Msa1202900:CDS
TTCCCCTTCAGTGTTGGCGA+AGG 0.546113 8_1:+56601416 None:intergenic
TTGAACCTCAGCAAAGAGAA+AGG 0.547330 8_1:-56602474 Msa1202900:CDS
AACCTATTCAACAGGGACAA+TGG 0.551901 8_1:-56602564 Msa1202900:CDS
TTCTCCTGAGGAGCAAGAAA+GGG 0.559662 8_1:-56601198 Msa1202900:CDS
AAAGGCAGAAGCCAAGCAGA+TGG 0.561114 8_1:+56601094 None:intergenic
GCCACTCTGGCAGTTACTAA+GGG 0.562702 8_1:-56604963 Msa1202900:CDS
CTCTGGCAGTTACTAAGGGC+TGG 0.562944 8_1:-56604959 Msa1202900:CDS
AGAAGCCAAGCAGATGGCAA+AGG 0.563592 8_1:+56601100 None:intergenic
AAGCATAGTCCACGAACTCA+AGG 0.563615 8_1:-56605848 Msa1202900:CDS
TACATTTGACATCAAGCAGA+TGG 0.568187 8_1:+56604877 None:intergenic
GATCGACAATTCTTTGGAGA+CGG 0.573373 8_1:+56601614 None:intergenic
CGATGCAGTGCTTTATTCGG+AGG 0.578350 8_1:-56602313 Msa1202900:CDS
AACCAAATTGTCGATCAAGC+CGG 0.584672 8_1:-56601658 Msa1202900:CDS
TGAGGTTCAACAGCACGCGC+AGG 0.587298 8_1:+56602487 None:intergenic
AAGGCTTGGAAGGCGGAGAG+TGG 0.587325 8_1:+56601119 None:intergenic
CTAACAAGACGGCTACATGT+TGG 0.589236 8_1:+56601572 None:intergenic
AGCACTGCATCGGATGATCA+CGG 0.590485 8_1:+56602324 None:intergenic
AGGTTCAACTGGATTTACAT+CGG 0.590714 8_1:+56602582 None:intergenic
TGACATCAAGCAGATGGCAA+AGG 0.593141 8_1:+56604883 None:intergenic
TAGATGGGATGAGCAGTGCA+AGG 0.593291 8_1:-56601309 Msa1202900:CDS
AGCATAGTCCACGAACTCAA+GGG 0.598895 8_1:-56605847 Msa1202900:CDS
GGAGCAACCGAATACTTACA+TGG 0.602497 8_1:+56602236 None:intergenic
CTCCGAATAAAGCACTGCAT+CGG 0.604271 8_1:+56602314 None:intergenic
TTGAAGAGCTCGAGACATCT+CGG 0.605518 8_1:-56602510 Msa1202900:CDS
AAACAATGGCTACAAGGTCA+AGG 0.605692 8_1:+56605023 None:intergenic
TGTCTCAGCTATTCATAAAG+GGG 0.608301 8_1:-56601492 Msa1202900:CDS
TAGCTCTGATTGGCTTGCAG+AGG 0.609870 8_1:+56601373 None:intergenic
GCCCTTGACACTCAAAAGCA+AGG 0.612932 8_1:-56601336 Msa1202900:CDS
GGGATGAGCAGTGCAAGGGT+TGG 0.613229 8_1:-56601304 Msa1202900:CDS
TCTCGAGCTCTTCAACCCTA+CGG 0.616335 8_1:+56602518 None:intergenic
GGAGTGCTGAGAGCAAGCAT+TGG 0.616653 8_1:-56605801 Msa1202900:CDS
ATTACAAGATCGATAAACAA+TGG 0.620701 8_1:+56605009 None:intergenic
GTCTCATAATGTTTCTCCTG+AGG 0.621196 8_1:-56601210 Msa1202900:CDS
CACTGCATCGGATGATCACG+GGG 0.621816 8_1:+56602326 None:intergenic
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 8_1:+56604902 None:intergenic
AATGTATTCTTCTTGGCGAG+TGG 0.627171 8_1:+56601534 None:intergenic
GCCCTTAGTAACTGCCAGAG+TGG 0.631046 8_1:+56604962 None:intergenic
TGGAAATGGTGCTAACAAGA+CGG 0.633735 8_1:+56601561 None:intergenic
AGATGGGATGAGCAGTGCAA+GGG 0.635701 8_1:-56601308 Msa1202900:CDS
GCATAGTCCACGAACTCAAG+GGG 0.636321 8_1:-56605846 Msa1202900:CDS
GAGTGGATAAGTGTAGTCCA+TGG 0.637239 8_1:+56604919 None:intergenic
GCAAGCCTATCAAGGCTACA+CGG 0.639910 8_1:-56605166 Msa1202900:intron
TCAGGAGAAACATTATGAGA+CGG 0.641318 8_1:+56601212 None:intergenic
AGGCTACACGGACTGAGCCA+AGG 0.643171 8_1:-56605154 Msa1202900:CDS
AGGTAAAGATGTCAATGTCA+GGG 0.644230 8_1:+56601463 None:intergenic
GATGGCAAAGGCTTGGAAGG+CGG 0.644428 8_1:+56601112 None:intergenic
TAACACGCCCCATGACATCA+GGG 0.652203 8_1:+56605065 None:intergenic
GAGTGGATAAGAGTAGTCCA+TGG 0.657388 8_1:+56601136 None:intergenic
GGTTGGCACCTAGACTTCAA+GGG 0.657836 8_1:-56601287 Msa1202900:CDS
CCAATTGAACCTATTCAACA+GGG 0.658968 8_1:-56605736 Msa1202900:CDS
GGGATGAACAGCACAATGGT+TGG 0.661556 8_1:-56605090 Msa1202900:CDS
TAGAAAAGATGTATTCACCA+TGG 0.664951 8_1:-56604936 Msa1202900:CDS
CGATGGGATGAACAGCACAA+TGG 0.666246 8_1:-56605094 Msa1202900:CDS
CTTCAAGGGACGTGTTACAG+TGG 0.670332 8_1:-56601273 Msa1202900:CDS
CCAGTTGAACCTATTCAACA+GGG 0.671773 8_1:-56602571 Msa1202900:CDS
AACGTTTCATCAGATACTGG+AGG 0.677184 8_1:+56601443 None:intergenic
ATGTCTAAAAGCAATTCGGG+TGG 0.680227 8_1:+56605697 None:intergenic
TGGAACAGATATATTCACCA+TGG 0.684144 8_1:-56601153 Msa1202900:CDS
GTTGGTGCCCTGATGTCATG+GGG 0.688750 8_1:-56605072 Msa1202900:CDS
TGAACTGCAGCATCATCTGG+AGG 0.713495 8_1:+56601680 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAGATTTGTAA+TGG + chr8_1:56602747-56602766 None:intergenic 10.0%
!!! TAAAAAAAAAAAAAAAGTAC+TGG + chr8_1:56602797-56602816 None:intergenic 10.0%
!!! TATTCTCTATTTTTTTTTTT+TGG + chr8_1:56603167-56603186 None:intergenic 10.0%
!! ATATCTTATTATTAAATATC+CGG + chr8_1:56605305-56605324 None:intergenic 10.0%
!! GTCATGTAATAATTAATAAT+AGG + chr8_1:56602368-56602387 None:intergenic 15.0%
!!! TACATTTTTATGTGATTTTT+AGG + chr8_1:56602490-56602509 None:intergenic 15.0%
!!! TCATTATTGTTTTTGTTTAT+AGG + chr8_1:56602551-56602570 None:intergenic 15.0%
!! TAAATAAATAGCCAATTATT+TGG - chr8_1:56603682-56603701 Msa1202900:intron 15.0%
!! AAATAAATAGCCAATTATTT+GGG - chr8_1:56603683-56603702 Msa1202900:intron 15.0%
!!! TTTTTATGTTAATAACATCA+TGG - chr8_1:56603876-56603895 Msa1202900:intron 15.0%
!! TATTAACAAGGTTTATTATA+TGG + chr8_1:56603960-56603979 None:intergenic 15.0%
!! ATAACTTATGAATATTAACA+AGG + chr8_1:56603972-56603991 None:intergenic 15.0%
!!! AAATGATAGTTAAATTTTGA+GGG - chr8_1:56604021-56604040 Msa1202900:intron 15.0%
!! ATAGAACATAAAAAATATGA+GGG + chr8_1:56604568-56604587 None:intergenic 15.0%
!! AATAGAACATAAAAAATATG+AGG + chr8_1:56604569-56604588 None:intergenic 15.0%
!! AATTATGTCTAAAAGCAATT+CGG + chr8_1:56601251-56601270 None:intergenic 20.0%
!! TTGATATTTATACATATGAC+AGG - chr8_1:56601635-56601654 Msa1202900:CDS 20.0%
!! TACCTTTATACTAAAAAACA+AGG - chr8_1:56601819-56601838 Msa1202900:intron 20.0%
!!! TTTTTGTTTATAGGATTTTG+AGG + chr8_1:56602542-56602561 None:intergenic 20.0%
!!! AAATGTAATTGACTTTGTAT+GGG + chr8_1:56602973-56602992 None:intergenic 20.0%
!!! TAAATGTAATTGACTTTGTA+TGG + chr8_1:56602974-56602993 None:intergenic 20.0%
!! AATATTCAATCCCAAATAAT+TGG + chr8_1:56603696-56603715 None:intergenic 20.0%
!! CTCAAAATTTAACTATCATT+TGG + chr8_1:56604022-56604041 None:intergenic 20.0%
!!! CAAATGATAGTTAAATTTTG+AGG - chr8_1:56604020-56604039 Msa1202900:intron 20.0%
!! AAGTAACAAAATCAATGATA+AGG - chr8_1:56604053-56604072 Msa1202900:intron 20.0%
!! TATATATGTATACTAACCAT+TGG - chr8_1:56604094-56604113 Msa1202900:intron 20.0%
!! ATCTGTTATAACGAAATAAA+TGG - chr8_1:56604193-56604212 Msa1202900:intron 20.0%
!! AAATAAATGGTTGTATTGTT+TGG - chr8_1:56604206-56604225 Msa1202900:intron 20.0%
! TTAAAAATGGAATGTCAAAG+TGG - chr8_1:56601119-56601138 Msa1202900:CDS 25.0%
! ATTATGTCTAAAAGCAATTC+GGG + chr8_1:56601250-56601269 None:intergenic 25.0%
! ATAAAATTTGACCCGAAAAT+GGG + chr8_1:56601432-56601451 None:intergenic 25.0%
! AATAAAATTTGACCCGAAAA+TGG + chr8_1:56601433-56601452 None:intergenic 25.0%
! GAAAAAGTTTCATCAAATAC+TGG + chr8_1:56601706-56601725 None:intergenic 25.0%
!!! AGCCTTGTTTTTTAGTATAA+AGG + chr8_1:56601824-56601843 None:intergenic 25.0%
! ATTACAAGATCGATAAACAA+TGG + chr8_1:56601935-56601954 None:intergenic 25.0%
!!! TTTTATTTTGAGCGAACTTA+TGG + chr8_1:56602179-56602198 None:intergenic 25.0%
!!! ACTATTTGAGTTGCTTATAT+TGG - chr8_1:56602843-56602862 Msa1202900:intron 25.0%
!! CAAGAATAAACTAGAAGTTT+TGG - chr8_1:56603140-56603159 Msa1202900:intron 25.0%
! TAATGTTGCAATAAATTCGA+GGG + chr8_1:56603335-56603354 None:intergenic 25.0%
! CTGATCACGTAAAATATATT+GGG - chr8_1:56603362-56603381 Msa1202900:intron 25.0%
!!! TTTATTTTGACTAAATGTGC+AGG + chr8_1:56603518-56603537 None:intergenic 25.0%
!! TCAAAACTTAATTTTCAGTG+TGG - chr8_1:56603639-56603658 Msa1202900:intron 25.0%
!! ATTTGGGATTGAATATTGAT+TGG - chr8_1:56603699-56603718 Msa1202900:intron 25.0%
!! TTTGGGATTGAATATTGATT+GGG - chr8_1:56603700-56603719 Msa1202900:intron 25.0%
!!! TAGTTAAATTTTGAGGGATT+TGG - chr8_1:56604027-56604046 Msa1202900:intron 25.0%
! TGATTGTGACAAAAATACAA+AGG + chr8_1:56604248-56604267 None:intergenic 25.0%
! TTAGAATTGTACGTTTGTAT+TGG - chr8_1:56604273-56604292 Msa1202900:intron 25.0%
! AAACAAGTCATTTAAAAGCA+TGG - chr8_1:56604324-56604343 Msa1202900:intron 25.0%
! CATAAAAAATATGAGGGAAA+AGG + chr8_1:56604562-56604581 None:intergenic 25.0%
!!! GTGTTTAAACATCTCTTTTT+TGG - chr8_1:56604963-56604982 Msa1202900:CDS 25.0%
! GAAAAATCGATAGAATAGAA+GGG + chr8_1:56605157-56605176 None:intergenic 25.0%
! TGAAAAATCGATAGAATAGA+AGG + chr8_1:56605158-56605177 None:intergenic 25.0%
!! TCAAGTTGTGAAGATTATAA+GGG + chr8_1:56605187-56605206 None:intergenic 25.0%
!! ATCAAGTTGTGAAGATTATA+AGG + chr8_1:56605188-56605207 None:intergenic 25.0%
!! TCACAACTTGATTTTTATAC+AGG - chr8_1:56605196-56605215 Msa1202900:intron 25.0%
! TGCTTTTAGACATAATTCGA+AGG - chr8_1:56601254-56601273 Msa1202900:CDS 30.0%
! GCTTTTAGACATAATTCGAA+GGG - chr8_1:56601255-56601274 Msa1202900:CDS 30.0%
! TGTTGTTGTCTTTTGTGTTT+CGG - chr8_1:56601302-56601321 Msa1202900:CDS 30.0%
! ATACATTCTTCACCCATTTT+CGG - chr8_1:56601417-56601436 Msa1202900:CDS 30.0%
!!! GTCAAATTTTATTTTCCCTC+AGG - chr8_1:56601440-56601459 Msa1202900:CDS 30.0%
AGACAACATAAAAAACCTGA+GGG + chr8_1:56601458-56601477 None:intergenic 30.0%
AAGACAACATAAAAAACCTG+AGG + chr8_1:56601459-56601478 None:intergenic 30.0%
GGGCTATTTATACACATAAA+GGG + chr8_1:56601482-56601501 None:intergenic 30.0%
CTTCTGATATAGCATTGTAT+CGG + chr8_1:56601520-56601539 None:intergenic 30.0%
! TCAAGTTGTGAAGCTTATAA+GGG + chr8_1:56601619-56601638 None:intergenic 30.0%
! ATCAAGTTGTGAAGCTTATA+AGG + chr8_1:56601620-56601639 None:intergenic 30.0%
AAAGTTTCATCAAATACTGG+AGG + chr8_1:56601703-56601722 None:intergenic 30.0%
GCAAAGTATGAATCTTACAT+TGG + chr8_1:56601757-56601776 None:intergenic 30.0%
!! TTAGTATAAAGGTATCGATC+TGG + chr8_1:56601813-56601832 None:intergenic 30.0%
TAGAAAAGATGTATTCACCA+TGG - chr8_1:56602005-56602024 Msa1202900:intron 30.0%
ACTTATACGGACAAAAATAG+CGG + chr8_1:56602239-56602258 None:intergenic 30.0%
!!! AAGTACTGGTTTTTCTGTTT+TGG + chr8_1:56602783-56602802 None:intergenic 30.0%
! ACAATTTTGTCACAATACCT+TGG + chr8_1:56602871-56602890 None:intergenic 30.0%
!!! TTCGTGAAGACTTTTTTTGT+GGG + chr8_1:56603095-56603114 None:intergenic 30.0%
!!! ATTCGTGAAGACTTTTTTTG+TGG + chr8_1:56603096-56603115 None:intergenic 30.0%
! TTGAATGATCTTATTTGCTG+TGG + chr8_1:56603222-56603241 None:intergenic 30.0%
ACAGCAAATAAGATCATTCA+AGG - chr8_1:56603221-56603240 Msa1202900:intron 30.0%
AAACTAGAAGGGAAAATATG+TGG + chr8_1:56603279-56603298 None:intergenic 30.0%
AATGTTGCAATAAATTCGAG+GGG + chr8_1:56603334-56603353 None:intergenic 30.0%
GTAATGTTGCAATAAATTCG+AGG + chr8_1:56603336-56603355 None:intergenic 30.0%
! CCAATATATTTTACGTGATC+AGG + chr8_1:56603364-56603383 None:intergenic 30.0%
CCTGATCACGTAAAATATAT+TGG - chr8_1:56603361-56603380 Msa1202900:intron 30.0%
TTGTAGCAAAATAAGCCAAT+CGG + chr8_1:56603397-56603416 None:intergenic 30.0%
! TGATTCCTAAAATTTAGCTC+TGG + chr8_1:56603560-56603579 None:intergenic 30.0%
!! AATTTTAGGAATCAGTTACG+TGG - chr8_1:56603566-56603585 Msa1202900:intron 30.0%
ACAATGTTGACAGAAACATA+TGG + chr8_1:56603801-56603820 None:intergenic 30.0%
CAAGGTTTATTATATGGTCA+AGG + chr8_1:56603954-56603973 None:intergenic 30.0%
! AAATGAGTTGCTCATTTTAG+AGG - chr8_1:56604135-56604154 Msa1202900:intron 30.0%
ATTACTTGCTTCACTGAAAT+AGG + chr8_1:56604502-56604521 None:intergenic 30.0%
TATGAGGGAAAAGGATAAAT+TGG + chr8_1:56604553-56604572 None:intergenic 30.0%
! CAAACTTTTCAGTTGTACTT+AGG - chr8_1:56604675-56604694 Msa1202900:intron 30.0%
! TTTTCAGTTGTACTTAGGTT+TGG - chr8_1:56604680-56604699 Msa1202900:intron 30.0%
TTTCAGTTGTACTTAGGTTT+GGG - chr8_1:56604681-56604700 Msa1202900:intron 30.0%
TAGAAAAAGAGATGGAATGT+TGG + chr8_1:56604729-56604748 None:intergenic 30.0%
CATTGTCTTAGAAAAAGAGA+TGG + chr8_1:56604737-56604756 None:intergenic 30.0%
!! ACAAACTTGCTCTAAAGTTA+TGG - chr8_1:56604832-56604851 Msa1202900:intron 30.0%
!! CAAACTTGCTCTAAAGTTAT+GGG - chr8_1:56604833-56604852 Msa1202900:intron 30.0%
GTTTGCTTGTAATTGTATAG+CGG - chr8_1:56604985-56605004 Msa1202900:CDS 30.0%
CAAGTTGTGAAGATTATAAG+GGG + chr8_1:56605186-56605205 None:intergenic 30.0%
! TTTTTATACAGGTCCAGTTT+TGG - chr8_1:56605207-56605226 Msa1202900:intron 30.0%
! TTTTATACAGGTCCAGTTTT+GGG - chr8_1:56605208-56605227 Msa1202900:intron 30.0%
ATGATGCAATGTATTCTTCT+TGG + chr8_1:56605417-56605436 None:intergenic 30.0%
GAACTCAAGGGGATTAAAAA+TGG - chr8_1:56601106-56601125 Msa1202900:CDS 35.0%
AGAACAATGTGTGACTTTGA+CGG + chr8_1:56601175-56601194 None:intergenic 35.0%
TCCAATTGAACCTATTCAAC+AGG - chr8_1:56601204-56601223 Msa1202900:CDS 35.0%
CCAATTGAACCTATTCAACA+GGG - chr8_1:56601205-56601224 Msa1202900:CDS 35.0%
GTGTTTCGGTATGTAAATCA+TGG - chr8_1:56601316-56601335 Msa1202900:CDS 35.0%
TTTCGGTATGTAAATCATGG+AGG - chr8_1:56601319-56601338 Msa1202900:CDS 35.0%
ATTTCCTATTTCACTGATGC+AGG - chr8_1:56601392-56601411 Msa1202900:CDS 35.0%
ATTACCTGCATCAGTGAAAT+AGG + chr8_1:56601399-56601418 None:intergenic 35.0%
! TACATTCTTCACCCATTTTC+GGG - chr8_1:56601418-56601437 Msa1202900:CDS 35.0%
CGGGCTATTTATACACATAA+AGG + chr8_1:56601483-56601502 None:intergenic 35.0%
CATTGTATCGGATGATTAGA+GGG + chr8_1:56601508-56601527 None:intergenic 35.0%
CGATACAATGCTATATCAGA+AGG - chr8_1:56601518-56601537 Msa1202900:CDS 35.0%
ATTCCTGCTGTACTTAGATT+TGG - chr8_1:56601558-56601577 Msa1202900:CDS 35.0%
ACTGTCGTATATAGTGAACT+TGG + chr8_1:56601677-56601696 None:intergenic 35.0%
TAAAAAACAAGGCTCTTCGA+TGG - chr8_1:56601830-56601849 Msa1202900:intron 35.0%
AAAAAACAAGGCTCTTCGAT+GGG - chr8_1:56601831-56601850 Msa1202900:intron 35.0%
ATCGATAAACAATGGCTACA+AGG + chr8_1:56601927-56601946 None:intergenic 35.0%
TACATTTGACATCAAGCAGA+TGG + chr8_1:56602067-56602086 None:intergenic 35.0%
! ATAGCGGAAATTGCATAGTA+AGG + chr8_1:56602223-56602242 None:intergenic 35.0%
ACCTTATACACTTCCTATGA+GGG - chr8_1:56602269-56602288 Msa1202900:CDS 35.0%
ACTAATAAAGAGTCCCTCAT+AGG + chr8_1:56602285-56602304 None:intergenic 35.0%
AAAGCTTAAACTGAAGTGTG+TGG - chr8_1:56602321-56602340 Msa1202900:CDS 35.0%
AAGTGGTATCATGGTCATAA+AGG + chr8_1:56602514-56602533 None:intergenic 35.0%
! CACAGCACACATAAAAGTAT+GGG + chr8_1:56602575-56602594 None:intergenic 35.0%
ACACAGCACACATAAAAGTA+TGG + chr8_1:56602576-56602595 None:intergenic 35.0%
!! AGTTGCTTATATTGGTTCCA+AGG - chr8_1:56602851-56602870 Msa1202900:intron 35.0%
AATGCCGAAACGTTGTATAA+TGG - chr8_1:56603007-56603026 Msa1202900:intron 35.0%
ATGCCGAAACGTTGTATAAT+GGG - chr8_1:56603008-56603027 Msa1202900:intron 35.0%
CTCAAGGATACAAACTAGAA+GGG + chr8_1:56603290-56603309 None:intergenic 35.0%
ATGTTGCAATAAATTCGAGG+GGG + chr8_1:56603333-56603352 None:intergenic 35.0%
! TATATTTTACGTGATCAGGC+AGG + chr8_1:56603360-56603379 None:intergenic 35.0%
CGTAAAATATATTGGGAGAC+AGG - chr8_1:56603369-56603388 Msa1202900:intron 35.0%
TGTAGCAAAATAAGCCAATC+GGG + chr8_1:56603396-56603415 None:intergenic 35.0%
ACCTCTACAATAAATTCGAG+CGG + chr8_1:56603423-56603442 None:intergenic 35.0%
CTGCTTCTAGTAGCATAATT+GGG - chr8_1:56603469-56603488 Msa1202900:intron 35.0%
TTGACTAAATGTGCAGGTTT+GGG + chr8_1:56603512-56603531 None:intergenic 35.0%
TTTGACTAAATGTGCAGGTT+TGG + chr8_1:56603513-56603532 None:intergenic 35.0%
! TGGTACTGAATTTGGAATGA+TGG - chr8_1:56603586-56603605 Msa1202900:intron 35.0%
!! GCTTGATAATGAGCTTGATA+AGG + chr8_1:56603732-56603751 None:intergenic 35.0%
TATCAAGCTCTCAAACATCT+TGG - chr8_1:56603744-56603763 Msa1202900:intron 35.0%
!!! GTGCAGCATTTTAGTTTTGT+AGG - chr8_1:56603923-56603942 Msa1202900:intron 35.0%
!! TTTTGTGTTGCTACGGATTT+TGG - chr8_1:56604301-56604320 Msa1202900:intron 35.0%
AGGTTCAACTGGATTTACAT+CGG + chr8_1:56604362-56604381 None:intergenic 35.0%
TAAATTATTCGCCCACTTTC+TGG - chr8_1:56604521-56604540 Msa1202900:intron 35.0%
! ATTGGATTAGACCAGAAAGT+GGG + chr8_1:56604535-56604554 None:intergenic 35.0%
! AATTGGATTAGACCAGAAAG+TGG + chr8_1:56604536-56604555 None:intergenic 35.0%
TTCAGTTGTACTTAGGTTTG+GGG - chr8_1:56604682-56604701 Msa1202900:intron 35.0%
GCGGTTAATAACAACTTATC+AGG + chr8_1:56605019-56605038 None:intergenic 35.0%
! AGTTGTTATTAACCGCCAAT+AGG - chr8_1:56605023-56605042 Msa1202900:CDS 35.0%
!! TAAAGTGAGGCAAGTTTTGA+TGG - chr8_1:56605114-56605133 Msa1202900:CDS 35.0%
TTGTGAAGATTATAAGGGGA+TGG + chr8_1:56605182-56605201 None:intergenic 35.0%
AATGTCGATCGACAATTCTT+TGG + chr8_1:56605336-56605355 None:intergenic 35.0%
AAGAATTGTCGATCGACATT+CGG - chr8_1:56605336-56605355 Msa1202900:intron 35.0%
CTGTCTCAGCTATTCATAAA+GGG - chr8_1:56605448-56605467 Msa1202900:intron 35.0%
TGTCTCAGCTATTCATAAAG+GGG - chr8_1:56605449-56605468 Msa1202900:intron 35.0%
AGGTAAAGATGTCAATGTCA+GGG + chr8_1:56605481-56605500 None:intergenic 35.0%
GAAAACGTTTCATCAGATAC+TGG + chr8_1:56605504-56605523 None:intergenic 35.0%
TCAGGAGAAACATTATGAGA+CGG + chr8_1:56605732-56605751 None:intergenic 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr8_1:56605768-56605787 Msa1202900:CDS 35.0%
TGGAACAGATATATTCACCA+TGG - chr8_1:56605788-56605807 Msa1202900:CDS 35.0%
! TTTTAATCCCCTTGAGTTCG+TGG + chr8_1:56601105-56601124 None:intergenic 40.0%
GAACAATGTGTGACTTTGAC+GGG + chr8_1:56601174-56601193 None:intergenic 40.0%
GTCAAAGTCACACATTGTTC+TGG - chr8_1:56601174-56601193 Msa1202900:CDS 40.0%
CCCTGTTGAATAGGTTCAAT+TGG + chr8_1:56601208-56601227 None:intergenic 40.0%
AACCTATTCAACAGGGACAA+TGG - chr8_1:56601212-56601231 Msa1202900:CDS 40.0%
ACCTATTCAACAGGGACAAT+GGG - chr8_1:56601213-56601232 Msa1202900:CDS 40.0%
ATGTCTAAAAGCAATTCGGG+TGG + chr8_1:56601247-56601266 None:intergenic 40.0%
GGTATGTAAATCATGGAGGT+CGG - chr8_1:56601323-56601342 Msa1202900:CDS 40.0%
TATCGGATGATTAGAGGGAA+CGG + chr8_1:56601503-56601522 None:intergenic 40.0%
GCATTGTATCGGATGATTAG+AGG + chr8_1:56601509-56601528 None:intergenic 40.0%
GTTGTGAAGCTTATAAGGGA+TGG + chr8_1:56601615-56601634 None:intergenic 40.0%
CATACTTTGCAAGCCTATCA+AGG - chr8_1:56601767-56601786 Msa1202900:intron 40.0%
AAACAATGGCTACAAGGTCA+AGG + chr8_1:56601921-56601940 None:intergenic 40.0%
TTTCTCGTGCAGATCGAAAA+TGG - chr8_1:56601956-56601975 Msa1202900:intron 40.0%
GGTGAAGCTTTGCACTTATA+CGG + chr8_1:56602252-56602271 None:intergenic 40.0%
CACCTTATACACTTCCTATG+AGG - chr8_1:56602268-56602287 Msa1202900:CDS 40.0%
! TCCCTCATAGGAAGTGTATA+AGG + chr8_1:56602273-56602292 None:intergenic 40.0%
!! AGGATTTTGAGGAACTGAAG+TGG + chr8_1:56602531-56602550 None:intergenic 40.0%
CGTCCCATTATACAACGTTT+CGG + chr8_1:56603014-56603033 None:intergenic 40.0%
! CGAAACGTTGTATAATGGGA+CGG - chr8_1:56603012-56603031 Msa1202900:intron 40.0%
CTTGAAGATGTTGTCTATGC+TGG + chr8_1:56603124-56603143 None:intergenic 40.0%
TGGAGGTTGCAAAGAAATGA+TGG + chr8_1:56603259-56603278 None:intergenic 40.0%
CTAGAAGGGAAAATATGTGG+AGG + chr8_1:56603276-56603295 None:intergenic 40.0%
CCTCAAGGATACAAACTAGA+AGG + chr8_1:56603291-56603310 None:intergenic 40.0%
!! CCTTCTAGTTTGTATCCTTG+AGG - chr8_1:56603288-56603307 Msa1202900:intron 40.0%
! GAGTATTTTGCATTGCCTCA+AGG + chr8_1:56603306-56603325 None:intergenic 40.0%
CCTCTACAATAAATTCGAGC+GGG + chr8_1:56603422-56603441 None:intergenic 40.0%
TAGAGGTTAAGCAATCTACG+AGG - chr8_1:56603436-56603455 Msa1202900:intron 40.0%
GCTGCTTCTAGTAGCATAAT+TGG - chr8_1:56603468-56603487 Msa1202900:intron 40.0%
TTCTAGTAGCATAATTGGGC+CGG - chr8_1:56603473-56603492 Msa1202900:intron 40.0%
! CTCAGCCAGAGCTAAATTTT+AGG - chr8_1:56603552-56603571 Msa1202900:intron 40.0%
! CAGTTACGTGGTACTGAATT+TGG - chr8_1:56603578-56603597 Msa1202900:intron 40.0%
! AGAGTTCTGACAGTAACCAA+TGG + chr8_1:56604113-56604132 None:intergenic 40.0%
GGTTCAACTGGATTTACATC+GGG + chr8_1:56604361-56604380 None:intergenic 40.0%
TCCAGTTGAACCTATTCAAC+AGG - chr8_1:56604369-56604388 Msa1202900:intron 40.0%
CCAGTTGAACCTATTCAACA+GGG - chr8_1:56604370-56604389 Msa1202900:intron 40.0%
AACCTATTCAACAGGGACAA+TGG - chr8_1:56601212-56601231 Msa1202900:CDS 40.0%
ACCTATTCAACAGGGACAAT+GGG - chr8_1:56601213-56601232 Msa1202900:CDS 40.0%
! ACAATGGGTAAGTCTGCTTT+TGG - chr8_1:56604393-56604412 Msa1202900:intron 40.0%
! TGCTTTTGGACTTAATCCGT+AGG - chr8_1:56604407-56604426 Msa1202900:intron 40.0%
! GCTTTTGGACTTAATCCGTA+GGG - chr8_1:56604408-56604427 Msa1202900:intron 40.0%
TTGAACCTCAGCAAAGAGAA+AGG - chr8_1:56604467-56604486 Msa1202900:intron 40.0%
CTTCATGTGTATGAATAGCC+CGG - chr8_1:56604591-56604610 Msa1202900:intron 40.0%
! ATCCGATGCAGTGCTTTATT+CGG - chr8_1:56604625-56604644 Msa1202900:intron 40.0%
! TTTGGGGCCATGTAAGTATT+CGG - chr8_1:56604698-56604717 Msa1202900:intron 40.0%
!! GTTCAAACTTGCTGTCCTAT+TGG + chr8_1:56605041-56605060 None:intergenic 40.0%
AACCAAATTGTCGATCAAGC+CGG - chr8_1:56605283-56605302 Msa1202900:intron 40.0%
! GATCGACAATTCTTTGGAGA+CGG + chr8_1:56605330-56605349 None:intergenic 40.0%
! TGGAAATGGTGCTAACAAGA+CGG + chr8_1:56605383-56605402 None:intergenic 40.0%
AATGTATTCTTCTTGGCGAG+TGG + chr8_1:56605410-56605429 None:intergenic 40.0%
CCTTTATGAATAGCTGAGAC+AGG + chr8_1:56605450-56605469 None:intergenic 40.0%
CCTGTCTCAGCTATTCATAA+AGG - chr8_1:56605447-56605466 Msa1202900:intron 40.0%
GAGGTAAAGATGTCAATGTC+AGG + chr8_1:56605482-56605501 None:intergenic 40.0%
AACGTTTCATCAGATACTGG+AGG + chr8_1:56605501-56605520 None:intergenic 40.0%
GTCTCATAATGTTTCTCCTG+AGG - chr8_1:56605731-56605750 Msa1202900:CDS 40.0%
GAAAGGGTAATCTTGCAGTT+TGG - chr8_1:56605759-56605778 Msa1202900:CDS 40.0%
AAGCATAGTCCACGAACTCA+AGG - chr8_1:56601093-56601112 Msa1202900:CDS 45.0%
AGCATAGTCCACGAACTCAA+GGG - chr8_1:56601094-56601113 Msa1202900:CDS 45.0%
ATTCGAAGGGTGAGACATCT+TGG - chr8_1:56601268-56601287 Msa1202900:CDS 45.0%
ATTACGCCAACTCAGCAATG+TGG - chr8_1:56601360-56601379 Msa1202900:CDS 45.0%
ATCCTTCCACATTGCTGAGT+TGG + chr8_1:56601369-56601388 None:intergenic 45.0%
ATCGGATGATTAGAGGGAAC+GGG + chr8_1:56601502-56601521 None:intergenic 45.0%
GCACCAAATCTAAGTACAGC+AGG + chr8_1:56601564-56601583 None:intergenic 45.0%
!! TAAAGGTATCGATCTGGCCT+TGG + chr8_1:56601807-56601826 None:intergenic 45.0%
GAGTGGATAAGTGTAGTCCA+TGG + chr8_1:56602025-56602044 None:intergenic 45.0%
TGACATCAAGCAGATGGCAA+AGG + chr8_1:56602061-56602080 None:intergenic 45.0%
TTTGAGCGAACTTATGGTCG+TGG + chr8_1:56602173-56602192 None:intergenic 45.0%
GCGGAAATTGCATAGTAAGG+CGG + chr8_1:56602220-56602239 None:intergenic 45.0%
GAGGAACTGAAGTGGTATCA+TGG + chr8_1:56602523-56602542 None:intergenic 45.0%
CCCGCTCGAATTTATTGTAG+AGG - chr8_1:56603419-56603438 Msa1202900:intron 45.0%
GGAATGATGGTTACGTCACA+TGG - chr8_1:56603599-56603618 Msa1202900:intron 45.0%
!! GGTGCAGTTTTGTGTTGCTA+CGG - chr8_1:56604294-56604313 Msa1202900:intron 45.0%
CCCTGTTGAATAGGTTCAAC+TGG + chr8_1:56604373-56604392 None:intergenic 45.0%
ACCCATTGTCCCTGTTGAAT+AGG + chr8_1:56604382-56604401 None:intergenic 45.0%
TTGAAGAGCTCGAGACATCT+CGG - chr8_1:56604431-56604450 Msa1202900:intron 45.0%
GTGATCCTTTCTCTTTGCTG+AGG + chr8_1:56604475-56604494 None:intergenic 45.0%
CGGGCTATTCATACACATGA+AGG + chr8_1:56604593-56604612 None:intergenic 45.0%
!! CTCCGAATAAAGCACTGCAT+CGG + chr8_1:56604630-56604649 None:intergenic 45.0%
GGAGCAACCGAATACTTACA+TGG + chr8_1:56604708-56604727 None:intergenic 45.0%
!! CAAACTTGCTGTCCTATTGG+CGG + chr8_1:56605038-56605057 None:intergenic 45.0%
CACTTTACCAGCACATTTGC+TGG + chr8_1:56605101-56605120 None:intergenic 45.0%
! GCAAATGTGCTGGTAAAGTG+AGG - chr8_1:56605101-56605120 Msa1202900:CDS 45.0%
!! GAACTTGTTGAGCCCAAAAC+TGG + chr8_1:56605223-56605242 None:intergenic 45.0%
! ATCCGGCTTGATCGACAATT+TGG + chr8_1:56605288-56605307 None:intergenic 45.0%
CTAACAAGACGGCTACATGT+TGG + chr8_1:56605372-56605391 None:intergenic 45.0%
! TGAGTTTTCCCCTTCAGTGT+TGG + chr8_1:56605534-56605553 None:intergenic 45.0%
!! GCCTTGCTTTTGAGTGTCAA+GGG + chr8_1:56605609-56605628 None:intergenic 45.0%
!! AGCCTTGCTTTTGAGTGTCA+AGG + chr8_1:56605610-56605629 None:intergenic 45.0%
TCAAAAGCAAGGCTCCTAGA+TGG - chr8_1:56605616-56605635 Msa1202900:intron 45.0%
CAAAAGCAAGGCTCCTAGAT+GGG - chr8_1:56605617-56605636 Msa1202900:intron 45.0%
TAACACGTCCCTTGAAGTCT+AGG + chr8_1:56605665-56605684 None:intergenic 45.0%
TTTCTCCTGAGGAGCAAGAA+AGG - chr8_1:56605742-56605761 Msa1202900:CDS 45.0%
TTCTCCTGAGGAGCAAGAAA+GGG - chr8_1:56605743-56605762 Msa1202900:CDS 45.0%
ATTACCCTTTCTTGCTCCTC+AGG + chr8_1:56605750-56605769 None:intergenic 45.0%
GAGTGGATAAGAGTAGTCCA+TGG + chr8_1:56605808-56605827 None:intergenic 45.0%
!!! TATCTATTTTTTTTTAATAT+AGG - chr8_1:56602673-56602692 Msa1202900:intron 5.0%
GCATAGTCCACGAACTCAAG+GGG - chr8_1:56601095-56601114 Msa1202900:CDS 50.0%
GCCCATTGTCCCTGTTGAAT+AGG + chr8_1:56601217-56601236 None:intergenic 50.0%
AAGACAACAACAGCACGCAC+AGG + chr8_1:56601294-56601313 None:intergenic 50.0%
TTTCCCTTCAGTGCAGGTGA+CGG + chr8_1:56601730-56601749 None:intergenic 50.0%
! GGATGTTTTCCCTTCAGTGC+AGG + chr8_1:56601736-56601755 None:intergenic 50.0%
GCAAGCCTATCAAGGCTACA+CGG - chr8_1:56601775-56601794 Msa1202900:intron 50.0%
! TCAGTCCGTGTAGCCTTGAT+AGG + chr8_1:56601783-56601802 None:intergenic 50.0%
CGATGGGATGAACAGCACAA+TGG - chr8_1:56601847-56601866 Msa1202900:intron 50.0%
GGGATGAACAGCACAATGGT+TGG - chr8_1:56601851-56601870 Msa1202900:intron 50.0%
TAACACGCCCCATGACATCA+GGG + chr8_1:56601879-56601898 None:intergenic 50.0%
TTAACACGCCCCATGACATC+AGG + chr8_1:56601880-56601899 None:intergenic 50.0%
CAGATCGAAAATGGCCACTC+TGG - chr8_1:56601965-56601984 Msa1202900:intron 50.0%
GCCACTCTGGCAGTTACTAA+GGG - chr8_1:56601978-56601997 Msa1202900:intron 50.0%
TCAAGCAGATGGCAAAGGCT+TGG + chr8_1:56602056-56602075 None:intergenic 50.0%
ATGTGCAGGTTTGGGCCTAT+TGG + chr8_1:56603504-56603523 None:intergenic 50.0%
TCTCGAGCTCTTCAACCCTA+CGG + chr8_1:56604426-56604445 None:intergenic 50.0%
AGCACTGCATCGGATGATCA+CGG + chr8_1:56604620-56604639 None:intergenic 50.0%
! CGATGCAGTGCTTTATTCGG+AGG - chr8_1:56604628-56604647 Msa1202900:intron 50.0%
TCTCAAGCCAGCAAATGTGC+TGG - chr8_1:56605091-56605110 Msa1202900:CDS 50.0%
TGAACTGCAGCATCATCTGG+AGG + chr8_1:56605264-56605283 None:intergenic 50.0%
GGTTGAACTGCAGCATCATC+TGG + chr8_1:56605267-56605286 None:intergenic 50.0%
! TGGCGAGTGGACTTTGGAAA+TGG + chr8_1:56605397-56605416 None:intergenic 50.0%
! TCTTCTTGGCGAGTGGACTT+TGG + chr8_1:56605403-56605422 None:intergenic 50.0%
TTCTCCTTCGCCAACACTGA+AGG - chr8_1:56605521-56605540 Msa1202900:intron 50.0%
TCTCCTTCGCCAACACTGAA+GGG - chr8_1:56605522-56605541 Msa1202900:intron 50.0%
!! TAGCTCTGATTGGCTTGCAG+AGG + chr8_1:56605571-56605590 None:intergenic 50.0%
!! TCAGTCCTGGTAGCTCTGAT+TGG + chr8_1:56605581-56605600 None:intergenic 50.0%
GCCCTTGACACTCAAAAGCA+AGG - chr8_1:56605605-56605624 Msa1202900:intron 50.0%
TTGCACTGCTCATCCCATCT+AGG + chr8_1:56605633-56605652 None:intergenic 50.0%
TAGATGGGATGAGCAGTGCA+AGG - chr8_1:56605632-56605651 Msa1202900:intron 50.0%
AGATGGGATGAGCAGTGCAA+GGG - chr8_1:56605633-56605652 Msa1202900:intron 50.0%
GGTTGGCACCTAGACTTCAA+GGG - chr8_1:56605654-56605673 Msa1202900:CDS 50.0%
CTTCAAGGGACGTGTTACAG+TGG - chr8_1:56605668-56605687 Msa1202900:CDS 50.0%
AGAAGCCAAGCAGATGGCAA+AGG + chr8_1:56605844-56605863 None:intergenic 50.0%
AAAGGCAGAAGCCAAGCAGA+TGG + chr8_1:56605850-56605869 None:intergenic 50.0%
!! GGAGTGCTGAGAGCAAGCAT+TGG - chr8_1:56601140-56601159 Msa1202900:CDS 55.0%
CGCCAACTCAGCAATGTGGA+AGG - chr8_1:56601364-56601383 Msa1202900:CDS 55.0%
TTCTCCGTCACCTGCACTGA+AGG - chr8_1:56601723-56601742 Msa1202900:CDS 55.0%
TCTCCGTCACCTGCACTGAA+GGG - chr8_1:56601724-56601743 Msa1202900:CDS 55.0%
! TGGTTGGTGCCCTGATGTCA+TGG - chr8_1:56601867-56601886 Msa1202900:intron 55.0%
! GGTTGGTGCCCTGATGTCAT+GGG - chr8_1:56601868-56601887 Msa1202900:intron 55.0%
! GTTGGTGCCCTGATGTCATG+GGG - chr8_1:56601869-56601888 Msa1202900:intron 55.0%
GGCCACTCTGGCAGTTACTA+AGG - chr8_1:56601977-56601996 Msa1202900:intron 55.0%
GCCCTTAGTAACTGCCAGAG+TGG + chr8_1:56601982-56602001 None:intergenic 55.0%
CTCTGGCAGTTACTAAGGGC+TGG - chr8_1:56601982-56602001 Msa1202900:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr8_1:56602042-56602061 None:intergenic 55.0%
GCAGATGGCAAAGGCTTGGA+AGG + chr8_1:56602052-56602071 None:intergenic 55.0%
ATTGGGAGACAGGACCCGAT+TGG - chr8_1:56603379-56603398 Msa1202900:intron 55.0%
GCAATCTACGAGGCGCATAG+AGG - chr8_1:56603446-56603465 Msa1202900:intron 55.0%
! CAGGTTTGGGCCTATTGGCT+GGG + chr8_1:56603499-56603518 None:intergenic 55.0%
CACTGCATCGGATGATCACG+GGG + chr8_1:56604618-56604637 None:intergenic 55.0%
GCACTGCATCGGATGATCAC+GGG + chr8_1:56604619-56604638 None:intergenic 55.0%
CTCCTTCGCCAACACTGAAG+GGG - chr8_1:56605523-56605542 Msa1202900:intron 55.0%
!! TTCCCCTTCAGTGTTGGCGA+AGG + chr8_1:56605528-56605547 None:intergenic 55.0%
GCAAGCCAATCAGAGCTACC+AGG - chr8_1:56605573-56605592 Msa1202900:intron 55.0%
! GGGTTGGCACCTAGACTTCA+AGG - chr8_1:56605653-56605672 Msa1202900:CDS 55.0%
GATGGCAAAGGCTTGGAAGG+CGG + chr8_1:56602049-56602068 None:intergenic 55.0%
GCAGATGGCAAAGGCTTGGA+AGG + chr8_1:56602052-56602071 None:intergenic 55.0%
CCAAGCAGATGGCAAAGGCT+TGG + chr8_1:56605839-56605858 None:intergenic 55.0%
CCAAGCCTTTGCCATCTGCT+TGG - chr8_1:56602053-56602072 Msa1202900:intron 55.0%
! AGGCTACACGGACTGAGCCA+AGG - chr8_1:56601787-56601806 Msa1202900:intron 60.0%
! TTTGGGCCTATTGGCTGGGC+CGG + chr8_1:56603495-56603514 None:intergenic 60.0%
GCAGGTTTGGGCCTATTGGC+TGG + chr8_1:56603500-56603519 None:intergenic 60.0%
TGAGGTTCAACAGCACGCGC+AGG + chr8_1:56604457-56604476 None:intergenic 60.0%
ATCGGATGATCACGGGGACC+GGG + chr8_1:56604612-56604631 None:intergenic 60.0%
CATCGGATGATCACGGGGAC+CGG + chr8_1:56604613-56604632 None:intergenic 60.0%
GTCAAGGGCTCACTCAGTCC+TGG + chr8_1:56605594-56605613 None:intergenic 60.0%
GGGATGAGCAGTGCAAGGGT+TGG - chr8_1:56605637-56605656 Msa1202900:intron 60.0%
AAGGCTTGGAAGGCGGAGAG+TGG + chr8_1:56605825-56605844 None:intergenic 60.0%
ATTGGGCCGGCCCAGCCAAT+AGG - chr8_1:56603486-56603505 Msa1202900:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56601082 56605881 56601082 ID=Msa1202900;Name=Msa1202900
chr8_1 mRNA 56601082 56605881 56601082 ID=Msa1202900-mRNA-1;Parent=Msa1202900;Name=Msa1202900-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0.5|0.6|5|0|514
chr8_1 exon 56605640 56605881 56605640 ID=Msa1202900-mRNA-1:exon:18476;Parent=Msa1202900-mRNA-1
chr8_1 exon 56604880 56605174 56604880 ID=Msa1202900-mRNA-1:exon:18475;Parent=Msa1202900-mRNA-1
chr8_1 exon 56602447 56602686 56602447 ID=Msa1202900-mRNA-1:exon:18474;Parent=Msa1202900-mRNA-1
chr8_1 exon 56602251 56602354 56602251 ID=Msa1202900-mRNA-1:exon:18473;Parent=Msa1202900-mRNA-1
chr8_1 exon 56601082 56601745 56601082 ID=Msa1202900-mRNA-1:exon:18472;Parent=Msa1202900-mRNA-1
chr8_1 CDS 56605640 56605881 56605640 ID=Msa1202900-mRNA-1:cds;Parent=Msa1202900-mRNA-1
chr8_1 CDS 56604880 56605174 56604880 ID=Msa1202900-mRNA-1:cds;Parent=Msa1202900-mRNA-1
chr8_1 CDS 56602447 56602686 56602447 ID=Msa1202900-mRNA-1:cds;Parent=Msa1202900-mRNA-1
chr8_1 CDS 56602251 56602354 56602251 ID=Msa1202900-mRNA-1:cds;Parent=Msa1202900-mRNA-1
chr8_1 CDS 56601082 56601745 56601082 ID=Msa1202900-mRNA-1:cds;Parent=Msa1202900-mRNA-1
Gene Sequence

>Msa1202900

ATGTCATCGAAAAGCATAGTCCACGAACTCAAGGGGATTAAAAATGGAATGTCAAAGTGGAGTGCTGAGAGCAAGCATTGGCTTTGTCGCCCGTCAAAGTCACACATTGTTCTGGATGTAACTCCAATTGAACCTATTCAACAGGGACAATGGGCAACTCTACCACCCGAATTGCTTTTAGACATAATTCGAAGGGTGAGACATCTTGGCCTGTGCGTGCTGTTGTTGTCTTTTGTGTTTCGGCTACACGGACTGAGCCAAGGCCAGATCGATACCTTTATACTAAAAAACAAGGCTCTTCGATGGGATGAACAGCACAATGGTTGGTGCCCTGATGTCATGGGGCGTGTTAAAGTGACATCTGTGAAAAACCTTGACCTTGTAGCCATTGTTTATCGATCTTGTAATTTTTCTCGTGCAGATCGAAAATGGCCACTCTGGCAGTTACTAAGGGCTGGTAGAAAAGATGTATTCACCATGGACTACACTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGATGTCAAATAATTGTACGTTTGTATTGGTGCAGTTTTGTGTTGCTACGGATTTTGGAAACAAGTCATTTAAAAGCATGGAAAATGTTGCTCCCGATGTAAATCCAGTTGAACCTATTCAACAGGGACAATGGGTAAGTCTGCTTTTGGACTTAATCCGTAGGGTTGAAGAGCTCGAGACATCTCGGCCTGCGCGTGCTGTTGAACCTCAGCAAAGAGAAAGGATCACATTTCCTATTTCAGTGAAGCAACCCGGTCCCCGTGATCATCCGATGCAGTGCTTTATTCGGAGGAACAAAATGAGAGAATCATCACTTCAAACTTTTCAGTTGTACTTAGGTTTGGGGCCATGTAAGTCCAGTTTTGGGCTCAACAAGTTCTTTGTATACGACAATCAACCTCCAGATGATGCTGCAGTTCAACCAAATTGTCGATCAAGCCGGATATTTAATAATAAGATATCACCGTCTCCAAAGAATTGTCGATCGACATTCGGAAGAATTGCTCCAACATGTAGCCGTCTTGTTAGCACCATTTCCAAAGTCCACTCGCCAAGAAGAATACATTGCATCATGAATTCTATACCTGTCTCAGCTATTCATAAAGGGGAAAATGCCCTGACATTGACATCTTTACCTCCAGTATCTGATGAAACGTTTTCTCCTTCGCCAACACTGAAGGGGAAAACTCAAATGAGAGATTCATCCTCTGCAAGCCAATCAGAGCTACCAGGACTGAGTGAGCCCTTGACACTCAAAAGCAAGGCTCCTAGATGGGATGAGCAGTGCAAGGGTTGGCACCTAGACTTCAAGGGACGTGTTACAGTGGCATCTGTGAAAAACTTTCAATTTGTAGCTGCTGTTGATCCGTCTCATAATGTTTCTCCTGAGGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAACAGATATATTCACCATGGACTACTCTTATCCACTCTCCGCCTTCCAAGCCTTTGCCATCTGCTTGGCTTCTGCCTTTTCCGCGCCCTAA
Protein sequence

>Msa1202900

MSSKSIVHELKGIKNGMSKWSAESKHWLCRPSKSHIVLDVTPIEPIQQGQWATLPPELLLDIIRRVRHLGLCVLLLSFVFRLHGLSQGQIDTFILKNKALRWDEQHNGWCPDVMGRVKVTSVKNLDLVAIVYRSCNFSRADRKWPLWQLLRAGRKDVFTMDYTYPLSAFQAFAICLMSNNCTFVLVQFCVATDFGNKSFKSMENVAPDVNPVEPIQQGQWVSLLLDLIRRVEELETSRPARAVEPQQRERITFPISVKQPGPRDHPMQCFIRRNKMRESSLQTFQLYLGLGPCKSSFGLNKFFVYDNQPPDDAAVQPNCRSSRIFNNKISPSPKNCRSTFGRIAPTCSRLVSTISKVHSPRRIHCIMNSIPVSAIHKGENALTLTSLPPVSDETFSPSPTLKGKTQMRDSSSASQSELPGLSEPLTLKSKAPRWDEQCKGWHLDFKGRVTVASVKNFQFVAAVDPSHNVSPEEQERVILQFGKIGTDIFTMDYSYPLSAFQAFAICLASAFSAP*