Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464200 | AET03929.1 | 87.464 | 351 | 22 | 2 | 89 | 435 | 1 | 333 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464200 | sp|Q8GVE5|TLP2_ARATH | 43.928 | 387 | 169 | 11 | 81 | 435 | 20 | 390 | 9.47e-86 | 270 |
| Msa1464200 | sp|Q8GVE5|TLP2_ARATH | 51.429 | 70 | 33 | 1 | 4 | 73 | 317 | 385 | 1.82e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464200 | G7LES6 | 87.464 | 351 | 22 | 2 | 89 | 435 | 1 | 333 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1464200 | TF | TUB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1202900 | Msa1464200 | 0.813355 | 2.669931e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464200 | MtrunA17_Chr8g0373351 | 77.522 | 347 | 22 | 2 | 89 | 435 | 1 | 291 | 0.0 | 518 |
| Msa1464200 | MtrunA17_Chr8g0373351 | 56.061 | 66 | 28 | 1 | 10 | 75 | 224 | 288 | 7.98e-13 | 68.9 |
| Msa1464200 | MtrunA17_Chr8g0373001 | 57.513 | 386 | 118 | 10 | 87 | 435 | 33 | 409 | 1.21e-130 | 383 |
| Msa1464200 | MtrunA17_Chr8g0373001 | 60.000 | 70 | 27 | 1 | 4 | 73 | 336 | 404 | 4.39e-16 | 79.7 |
| Msa1464200 | MtrunA17_Chr5g0404321 | 49.751 | 402 | 146 | 11 | 77 | 435 | 25 | 413 | 9.32e-115 | 342 |
| Msa1464200 | MtrunA17_Chr5g0404321 | 57.143 | 70 | 29 | 1 | 4 | 73 | 340 | 408 | 1.43e-14 | 75.1 |
| Msa1464200 | MtrunA17_Chr8g0373361 | 49.880 | 417 | 134 | 10 | 75 | 430 | 2 | 404 | 3.49e-108 | 325 |
| Msa1464200 | MtrunA17_Chr8g0373331 | 46.753 | 385 | 111 | 12 | 78 | 429 | 23 | 346 | 2.43e-88 | 272 |
| Msa1464200 | MtrunA17_Chr8g0373331 | 54.795 | 73 | 27 | 3 | 4 | 71 | 274 | 345 | 4.62e-12 | 67.0 |
| Msa1464200 | MtrunA17_Chr1g0155301 | 41.389 | 360 | 160 | 9 | 110 | 435 | 77 | 419 | 3.28e-72 | 233 |
| Msa1464200 | MtrunA17_Chr1g0155301 | 57.143 | 70 | 29 | 1 | 4 | 73 | 346 | 414 | 9.26e-15 | 75.9 |
| Msa1464200 | MtrunA17_Chr2g0278511 | 38.947 | 380 | 172 | 12 | 102 | 430 | 49 | 419 | 1.41e-65 | 216 |
| Msa1464200 | MtrunA17_Chr2g0286441 | 38.082 | 365 | 181 | 10 | 100 | 430 | 32 | 385 | 2.02e-64 | 212 |
| Msa1464200 | MtrunA17_Chr1g0201891 | 37.500 | 408 | 184 | 15 | 82 | 430 | 28 | 423 | 3.18e-62 | 207 |
| Msa1464200 | MtrunA17_Chr1g0196071 | 40.196 | 306 | 166 | 6 | 132 | 430 | 99 | 394 | 8.00e-60 | 200 |
| Msa1464200 | MtrunA17_Chr2g0315641 | 37.468 | 387 | 167 | 16 | 83 | 430 | 13 | 363 | 1.95e-54 | 185 |
| Msa1464200 | MtrunA17_Chr2g0315641 | 50.617 | 81 | 32 | 2 | 4 | 84 | 295 | 367 | 3.86e-13 | 70.5 |
| Msa1464200 | MtrunA17_Chr2g0315651 | 34.737 | 380 | 175 | 14 | 87 | 430 | 17 | 359 | 7.09e-42 | 152 |
| Msa1464200 | MtrunA17_Chr8g0373341 | 58.871 | 124 | 46 | 2 | 310 | 428 | 197 | 320 | 7.50e-35 | 132 |
| Msa1464200 | MtrunA17_Chr8g0373341 | 69.444 | 72 | 22 | 0 | 1 | 72 | 250 | 321 | 1.96e-26 | 108 |
| Msa1464200 | MtrunA17_Chr8g0373341 | 42.941 | 170 | 66 | 7 | 89 | 231 | 32 | 197 | 8.04e-24 | 101 |
| Msa1464200 | MtrunA17_Chr1g0156151 | 38.843 | 121 | 58 | 4 | 133 | 241 | 101 | 217 | 1.63e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464200 | AT2G18280.2 | 43.928 | 387 | 169 | 11 | 81 | 435 | 20 | 390 | 9.62e-87 | 270 |
| Msa1464200 | AT2G18280.2 | 51.429 | 70 | 33 | 1 | 4 | 73 | 317 | 385 | 1.85e-12 | 68.9 |
| Msa1464200 | AT2G18280.1 | 43.928 | 387 | 169 | 11 | 81 | 435 | 20 | 390 | 9.62e-87 | 270 |
| Msa1464200 | AT2G18280.1 | 51.429 | 70 | 33 | 1 | 4 | 73 | 317 | 385 | 1.85e-12 | 68.9 |
| Msa1464200 | AT1G47270.3 | 40.526 | 380 | 151 | 12 | 100 | 435 | 37 | 385 | 2.04e-71 | 230 |
| Msa1464200 | AT1G47270.3 | 49.315 | 73 | 33 | 2 | 4 | 73 | 309 | 380 | 7.12e-12 | 67.0 |
| Msa1464200 | AT1G47270.2 | 40.584 | 377 | 155 | 11 | 100 | 435 | 61 | 409 | 3.18e-71 | 231 |
| Msa1464200 | AT1G47270.2 | 49.315 | 73 | 33 | 2 | 4 | 73 | 333 | 404 | 8.94e-12 | 67.0 |
| Msa1464200 | AT1G47270.1 | 40.584 | 377 | 155 | 11 | 100 | 435 | 62 | 410 | 3.48e-71 | 230 |
| Msa1464200 | AT1G47270.1 | 49.315 | 73 | 33 | 2 | 4 | 73 | 334 | 405 | 9.05e-12 | 67.0 |
| Msa1464200 | AT1G25280.1 | 38.257 | 413 | 175 | 15 | 85 | 430 | 38 | 437 | 6.10e-66 | 218 |
| Msa1464200 | AT2G47900.2 | 39.075 | 389 | 182 | 12 | 81 | 430 | 26 | 398 | 1.41e-65 | 216 |
| Msa1464200 | AT2G47900.1 | 39.075 | 389 | 182 | 12 | 81 | 430 | 26 | 398 | 1.41e-65 | 216 |
| Msa1464200 | AT2G47900.3 | 38.974 | 390 | 182 | 12 | 81 | 430 | 26 | 399 | 2.46e-65 | 215 |
| Msa1464200 | AT1G76900.2 | 37.150 | 428 | 177 | 16 | 82 | 430 | 33 | 447 | 7.18e-61 | 205 |
| Msa1464200 | AT1G76900.1 | 37.150 | 428 | 177 | 16 | 82 | 430 | 33 | 447 | 7.18e-61 | 205 |
| Msa1464200 | AT1G76900.3 | 37.150 | 428 | 177 | 16 | 82 | 430 | 33 | 447 | 7.18e-61 | 205 |
| Msa1464200 | AT5G18680.1 | 39.557 | 316 | 157 | 11 | 129 | 430 | 86 | 381 | 1.25e-56 | 192 |
| Msa1464200 | AT1G43640.1 | 34.896 | 384 | 183 | 13 | 102 | 430 | 50 | 421 | 5.37e-55 | 189 |
| Msa1464200 | AT3G06380.1 | 38.835 | 309 | 160 | 11 | 132 | 430 | 83 | 372 | 5.24e-54 | 184 |
| Msa1464200 | AT3G06380.1 | 52.857 | 70 | 29 | 3 | 4 | 73 | 307 | 372 | 5.44e-12 | 67.4 |
| Msa1464200 | AT1G53320.1 | 40.171 | 351 | 150 | 12 | 110 | 430 | 51 | 371 | 9.13e-54 | 184 |
| Msa1464200 | AT1G53320.1 | 50.617 | 81 | 32 | 2 | 4 | 84 | 303 | 375 | 5.67e-13 | 70.5 |
| Msa1464200 | AT1G43640.2 | 37.576 | 330 | 163 | 11 | 132 | 430 | 38 | 355 | 2.85e-53 | 182 |
| Msa1464200 | AT5G18680.2 | 38.614 | 303 | 152 | 11 | 142 | 430 | 7 | 289 | 2.22e-51 | 175 |
| Msa1464200 | AT5G18680.2 | 51.351 | 74 | 31 | 3 | 4 | 73 | 217 | 289 | 6.35e-11 | 63.5 |
| Msa1464200 | AT3G06380.2 | 38.305 | 295 | 153 | 11 | 146 | 430 | 5 | 280 | 1.71e-49 | 170 |
| Msa1464200 | AT3G06380.2 | 52.857 | 70 | 29 | 3 | 4 | 73 | 215 | 280 | 2.18e-12 | 67.8 |
| Msa1464200 | AT1G25280.3 | 41.509 | 265 | 112 | 9 | 201 | 430 | 3 | 259 | 3.17e-47 | 163 |
| Msa1464200 | AT1G25280.2 | 41.509 | 265 | 112 | 9 | 201 | 430 | 3 | 259 | 3.17e-47 | 163 |
Find 112 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTTGCTTCACTGAAAT+AGG | 0.203520 | tig0043948:+6114 | Msa1464200:intergenic |
| ATCCGGCTTGATCGACAATT+TGG | 0.228814 | tig0043948:+5330 | Msa1464200:intergenic |
| CACTTTACCAGCACATTTGC+TGG | 0.239605 | tig0043948:+5517 | Msa1464200:intergenic |
| AATGTTGATCGACAATTCTT+TGG | 0.246336 | tig0043948:+5282 | Msa1464200:intergenic |
| ATGATGCAATGTATTCTTCT+TGG | 0.252868 | tig0043948:+5201 | Msa1464200:intergenic |
| TTTCTCGTGCAGATCGAAAA+TGG | 0.275180 | tig0043948:-8676 | Msa1464200:CDS |
| ATCTTACAGTTTGGAAAGAT+TGG | 0.311656 | tig0043948:-4847 | Msa1464200:CDS |
| GCGGTTAATAACAACTTATC+AGG | 0.340398 | tig0043948:+5599 | Msa1464200:intergenic |
| CCCTGTTGAATAGGTTCAAC+TGG | 0.343357 | tig0043948:+6243 | Msa1464200:intergenic |
| GTTCAAACTTGCTGTCCTAT+TGG | 0.349852 | tig0043948:+5577 | Msa1464200:intergenic |
| ATCCGATGCAGTGCTTTATT+CGG | 0.354028 | tig0043948:-5988 | Msa1464200:CDS |
| GAACTTGTTGAGCCCAAAAC+TGG | 0.355370 | tig0043948:+5395 | Msa1464200:intergenic |
| TCCAGTTGAACCTATTCAAC+AGG | 0.363499 | tig0043948:-6244 | Msa1464200:CDS |
| CTGTCTCAGCTATTCATAAA+GGG | 0.367799 | tig0043948:-5167 | Msa1464200:CDS |
| ACCCATTGTCCCTGTTGAAT+AGG | 0.369804 | tig0043948:+6234 | Msa1464200:intergenic |
| ATTACCCTTTCTTGCTCCTC+AGG | 0.370302 | tig0043948:+4868 | Msa1464200:intergenic |
| GAAAGGGTAATCTTACAGTT+TGG | 0.371540 | tig0043948:-4856 | Msa1464200:CDS |
| ACAATGGGTAAGTCTGCTTT+TGG | 0.377762 | tig0043948:-6220 | Msa1464200:CDS |
| ATATCTTATTATTAAATATC+CGG | 0.379842 | tig0043948:+5313 | Msa1464200:intergenic |
| CCAAGCCTTTGCCATCTGCT+TGG | 0.383935 | tig0043948:-4779 | Msa1464200:CDS |
| TCAAAAGCAAGGCTCCTAGA+TGG | 0.387776 | tig0043948:-4999 | Msa1464200:CDS |
| GGTTGAACTGCAGCATCATC+TGG | 0.388445 | tig0043948:+5351 | Msa1464200:intergenic |
| CCTGTCTCAGCTATTCATAA+AGG | 0.399999 | tig0043948:-5168 | Msa1464200:CDS |
| GGCCACTCTCGCAGTTACTA+AGG | 0.411085 | tig0043948:-8655 | Msa1464200:CDS |
| TCAGTCCTGGTAGCTCTGAT+TGG | 0.423592 | tig0043948:+5037 | Msa1464200:intergenic |
| AGTTGTTATTAACCGCCAAT+AGG | 0.427507 | tig0043948:-5592 | Msa1464200:CDS |
| TCTTCTTGGCGAGTGGACTT+TGG | 0.427811 | tig0043948:+5215 | Msa1464200:intergenic |
| TTAACACGCCCCATGACATC+AGG | 0.446343 | tig0043948:+8755 | Msa1464200:intergenic |
| CATCGGATGATCACGGGGAC+CGG | 0.448035 | tig0043948:+6003 | Msa1464200:intergenic |
| ACCTATTCAACAGGGACAAT+GGG | 0.455866 | tig0043948:-6235 | Msa1464200:CDS |
| GGGTTGGCACCTAGACTTCA+AGG | 0.460220 | tig0043948:-4962 | Msa1464200:CDS |
| GAGGTAAAGATGTCAATGTC+AGG | 0.460528 | tig0043948:+5136 | Msa1464200:intergenic |
| GAAAACGTTTCATCAGATAC+TGG | 0.463759 | tig0043948:+5114 | Msa1464200:intergenic |
| TTCTCCTTCGCCAACACTGA+AGG | 0.471471 | tig0043948:-5094 | Msa1464200:CDS |
| ATAAGTTTAGGGCGCGGAAA+AGG | 0.480468 | tig0043948:+4750 | Msa1464200:intergenic |
| TGGTTGGTGCCCTGATGTCA+TGG | 0.480715 | tig0043948:-8765 | Msa1464200:CDS |
| TTGCACTGCTCATCCCATCT+AGG | 0.486778 | tig0043948:+4985 | Msa1464200:intergenic |
| TTTCTCCTGAGGAGCAAGAA+AGG | 0.491680 | tig0043948:-4873 | Msa1464200:CDS |
| AAGAATTGTCGATCAACATT+CGG | 0.495521 | tig0043948:-5279 | Msa1464200:CDS |
| TGGCGAGTGGACTTTGGAAA+TGG | 0.496588 | tig0043948:+5221 | Msa1464200:intergenic |
| TAACACGTCCCTTGAAGTCT+AGG | 0.498472 | tig0043948:+4953 | Msa1464200:intergenic |
| AAACAAGTCATTTAAAAGCA+TGG | 0.499585 | tig0043948:-6289 | Msa1464200:CDS |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.500254 | tig0043948:+4783 | Msa1464200:intergenic |
| CCTTTATGAATAGCTGAGAC+AGG | 0.505478 | tig0043948:+5168 | Msa1464200:intergenic |
| GTGATCCTTTCTCTTTGCTG+AGG | 0.510106 | tig0043948:+6141 | Msa1464200:intergenic |
| CAAACTTGCTGTCCTATTGG+CGG | 0.512359 | tig0043948:+5580 | Msa1464200:intergenic |
| GGTTGGTGCCCTGATGTCAT+GGG | 0.515230 | tig0043948:-8764 | Msa1464200:CDS |
| CTCCTTCGCCAACACTGAAG+GGG | 0.516445 | tig0043948:-5092 | Msa1464200:CDS |
| CCAAGCAGATGGCAAAGGCT+TGG | 0.517089 | tig0043948:+4779 | Msa1464200:intergenic |
| TCAAGCAGATGGCAAAGGCT+TGG | 0.517298 | tig0043948:+8579 | Msa1464200:intergenic |
| GCACTGCATCGGATGATCAC+GGG | 0.519512 | tig0043948:+5997 | Msa1464200:intergenic |
| CAAAAGCAAGGCTCCTAGAT+GGG | 0.521682 | tig0043948:-4998 | Msa1464200:CDS |
| GCAGATGGCAAAGGCTTGGA+AGG | 0.525320 | tig0043948:+8583 | Msa1464200:intergenic |
| TCTCCTTCGCCAACACTGAA+GGG | 0.525573 | tig0043948:-5093 | Msa1464200:CDS |
| GTCAAGGGCTCACTCAGTCC+TGG | 0.526580 | tig0043948:+5024 | Msa1464200:intergenic |
| GGTTCAACTGGAGTTACATC+GGG | 0.530037 | tig0043948:+6255 | Msa1464200:intergenic |
| GCAAGCCAATCAGAGCTACC+AGG | 0.536157 | tig0043948:-5042 | Msa1464200:CDS |
| ATCGGATGATCACGGGGACC+GGG | 0.536395 | tig0043948:+6004 | Msa1464200:intergenic |
| ATCGATAAACAATGGCTACA+AGG | 0.537056 | tig0043948:+8708 | Msa1464200:intergenic |
| TTCCCCTTCAGTGTTGGCGA+AGG | 0.546113 | tig0043948:+5090 | Msa1464200:intergenic |
| TTGAACCTCAGCAAAGAGAA+AGG | 0.547330 | tig0043948:-6146 | Msa1464200:CDS |
| AACCTATTCAACAGGGACAA+TGG | 0.551901 | tig0043948:-6236 | Msa1464200:CDS |
| GATCGACAATTCTTTGGAGA+CGG | 0.555282 | tig0043948:+5288 | Msa1464200:intergenic |
| TTCTCCTGAGGAGCAAGAAA+GGG | 0.559662 | tig0043948:-4872 | Msa1464200:CDS |
| AAAGGCAGAAGCCAAGCAGA+TGG | 0.561114 | tig0043948:+4768 | Msa1464200:intergenic |
| AGAAGCCAAGCAGATGGCAA+AGG | 0.563592 | tig0043948:+4774 | Msa1464200:intergenic |
| TACATTTGACATCAAGCAGA+TGG | 0.568187 | tig0043948:+8568 | Msa1464200:intergenic |
| CTCTCGCAGTTACTAAGGGC+TGG | 0.568361 | tig0043948:-8650 | Msa1464200:CDS |
| GCCCTTAGTAACTGCGAGAG+TGG | 0.571691 | tig0043948:+8653 | Msa1464200:intergenic |
| GCCACTCTCGCAGTTACTAA+GGG | 0.572984 | tig0043948:-8654 | Msa1464200:CDS |
| CGATGCAGTGCTTTATTCGG+AGG | 0.578350 | tig0043948:-5985 | Msa1464200:CDS |
| AGGTTCAACTGGAGTTACAT+CGG | 0.583414 | tig0043948:+6254 | Msa1464200:intergenic |
| AACCAAATTGTCGATCAAGC+CGG | 0.584672 | tig0043948:-5332 | Msa1464200:CDS |
| TCTCAAGCCAGCAAATGTGC+TGG | 0.586754 | tig0043948:-5524 | Msa1464200:CDS |
| TGAGGTTCAACAGCACGCGC+AGG | 0.587298 | tig0043948:+6159 | Msa1464200:intergenic |
| AAGGCTTGGAAGGCGGAGAG+TGG | 0.587325 | tig0043948:+4793 | Msa1464200:intergenic |
| CTAACAAGACGGCTACATGT+TGG | 0.589236 | tig0043948:+5246 | Msa1464200:intergenic |
| AGCACTGCATCGGATGATCA+CGG | 0.590485 | tig0043948:+5996 | Msa1464200:intergenic |
| TGACATCAAGCAGATGGCAA+AGG | 0.593141 | tig0043948:+8574 | Msa1464200:intergenic |
| TAGATGGGATGAGCAGTGCA+AGG | 0.593291 | tig0043948:-4983 | Msa1464200:CDS |
| CTCCGAATAAAGCACTGCAT+CGG | 0.604271 | tig0043948:+5986 | Msa1464200:intergenic |
| TTGAAGAGCTCGAGACATCT+CGG | 0.605518 | tig0043948:-6182 | Msa1464200:CDS |
| AAACAATGGCTACAAGGTCA+AGG | 0.605692 | tig0043948:+8714 | Msa1464200:intergenic |
| TGTCTCAGCTATTCATAAAG+GGG | 0.608301 | tig0043948:-5166 | Msa1464200:CDS |
| TAGCTCTGATTGGCTTGCAG+AGG | 0.609870 | tig0043948:+5047 | Msa1464200:intergenic |
| GCCCTTGACACTCAAAAGCA+AGG | 0.612932 | tig0043948:-5010 | Msa1464200:CDS |
| GGGATGAGCAGTGCAAGGGT+TGG | 0.613229 | tig0043948:-4978 | Msa1464200:CDS |
| TCTCGAGCTCTTCAACCCTA+CGG | 0.616335 | tig0043948:+6190 | Msa1464200:intergenic |
| ATTACAAGATCGATAAACAA+TGG | 0.620701 | tig0043948:+8700 | Msa1464200:intergenic |
| GTCTCATAATGTTTCTCCTG+AGG | 0.621196 | tig0043948:-4884 | Msa1464200:CDS |
| CACTGCATCGGATGATCACG+GGG | 0.621816 | tig0043948:+5998 | Msa1464200:intergenic |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | tig0043948:+8593 | Msa1464200:intergenic |
| AATGTATTCTTCTTGGCGAG+TGG | 0.627171 | tig0043948:+5208 | Msa1464200:intergenic |
| GCAAATGTGCTGGTAAAGTG+AGG | 0.633295 | tig0043948:-5514 | Msa1464200:intron |
| TGGAAATGGTGCTAACAAGA+CGG | 0.633735 | tig0043948:+5235 | Msa1464200:intergenic |
| AGATGGGATGAGCAGTGCAA+GGG | 0.635701 | tig0043948:-4982 | Msa1464200:CDS |
| GAGTGGATAAGTGTAGTCCA+TGG | 0.637239 | tig0043948:+8610 | Msa1464200:intergenic |
| TCAGGAGAAACATTATGAGA+CGG | 0.641318 | tig0043948:+4886 | Msa1464200:intergenic |
| AGGTAAAGATGTCAATGTCA+GGG | 0.644230 | tig0043948:+5137 | Msa1464200:intergenic |
| GATGGCAAAGGCTTGGAAGG+CGG | 0.644428 | tig0043948:+4786 | Msa1464200:intergenic |
| TAACACGCCCCATGACATCA+GGG | 0.652203 | tig0043948:+8756 | Msa1464200:intergenic |
| GAGTGGATAAGAGTAGTCCA+TGG | 0.657388 | tig0043948:+4810 | Msa1464200:intergenic |
| GGTTGGCACCTAGACTTCAA+GGG | 0.657836 | tig0043948:-4961 | Msa1464200:CDS |
| GGGATGAACAGCACAATGGT+TGG | 0.661556 | tig0043948:-8781 | None:intergenic |
| TAGAAAAGATGTATTCACCA+TGG | 0.664951 | tig0043948:-8627 | Msa1464200:CDS |
| CGATGGGATGAACAGCACAA+TGG | 0.666246 | tig0043948:-8785 | None:intergenic |
| CTTCAAGGGACGTGTTACAG+TGG | 0.670332 | tig0043948:-4947 | Msa1464200:CDS |
| AACGTTTCATCAGATACTGG+AGG | 0.677184 | tig0043948:+5117 | Msa1464200:intergenic |
| TGGAACAGATATATTCACCA+TGG | 0.684144 | tig0043948:-4827 | Msa1464200:CDS |
| CCAGTTGAACCTATTCAACA+GGG | 0.686684 | tig0043948:-6243 | Msa1464200:CDS |
| GTTGGTGCCCTGATGTCATG+GGG | 0.688750 | tig0043948:-8763 | Msa1464200:CDS |
| TGAACTGCAGCATCATCTGG+AGG | 0.713495 | tig0043948:+5354 | Msa1464190:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAGATTTGTAA+TGG | + | tig0043948:5638-5657 | Msa1464200:intergenic | 10.0% |
| !!! | TATTCTCTATTTTTTTTTTT+TGG | + | tig0043948:6054-6073 | Msa1464200:intergenic | 10.0% |
| !! | ATATCTTATTATTAAATATC+CGG | + | tig0043948:8216-8235 | Msa1464200:intergenic | 10.0% |
| !! | GTCATGTAATAATTAATAAT+AGG | + | tig0043948:5262-5281 | Msa1464200:intergenic | 15.0% |
| !!! | TACATTTTTATGTGATTTTT+AGG | + | tig0043948:5384-5403 | Msa1464200:intergenic | 15.0% |
| !!! | TCATTATTGTTTTTGTTTAT+AGG | + | tig0043948:5445-5464 | Msa1464200:intergenic | 15.0% |
| !!! | CTTAAAAAAAAAAAAAGTAC+TGG | + | tig0043948:5686-5705 | Msa1464200:intergenic | 15.0% |
| !! | ATCACGTAATTAAATATATT+GGG | - | tig0043948:6248-6267 | Msa1464200:CDS | 15.0% |
| !! | TAAATAAATAGCCAATTATT+TGG | - | tig0043948:6568-6587 | Msa1464200:intron | 15.0% |
| !! | AAATAAATAGCCAATTATTT+GGG | - | tig0043948:6569-6588 | Msa1464200:intron | 15.0% |
| !! | TATTAACAAGGTTTATTATA+TGG | + | tig0043948:6882-6901 | Msa1464200:intergenic | 15.0% |
| !! | ATAACTTATGAATATTAACA+AGG | + | tig0043948:6894-6913 | Msa1464200:intergenic | 15.0% |
| !!! | TAAATGATAGTTAAATTTTG+AGG | - | tig0043948:6942-6961 | Msa1464200:intron | 15.0% |
| !!! | AAATGATAGTTAAATTTTGA+GGG | - | tig0043948:6943-6962 | Msa1464200:intron | 15.0% |
| !! | ATAGAACATAAAAAATATGA+GGG | + | tig0043948:7481-7500 | Msa1464200:intergenic | 15.0% |
| !! | AATAGAACATAAAAAATATG+AGG | + | tig0043948:7482-7501 | Msa1464200:intergenic | 15.0% |
| !!! | TTTTTGTTTATAGGATTTTG+AGG | + | tig0043948:5436-5455 | Msa1464200:intergenic | 20.0% |
| !!! | AAATGTAATTGACTTTGTAT+GGG | + | tig0043948:5860-5879 | Msa1464200:intergenic | 20.0% |
| !!! | TAAATGTAATTGACTTTGTA+TGG | + | tig0043948:5861-5880 | Msa1464200:intergenic | 20.0% |
| !! | ATATATTTAATTACGTGATC+AGG | + | tig0043948:6247-6266 | Msa1464200:intergenic | 20.0% |
| !! | GATCACGTAATTAAATATAT+TGG | - | tig0043948:6247-6266 | Msa1464200:CDS | 20.0% |
| !! | AATATTCAATCCCAAATAAT+TGG | + | tig0043948:6582-6601 | Msa1464200:intergenic | 20.0% |
| !! | AAGTAACAAAATCAATGATA+AGG | - | tig0043948:6975-6994 | Msa1464200:intron | 20.0% |
| !! | AAATAAATGGTTGTATTGTT+TGG | - | tig0043948:7119-7138 | Msa1464200:intron | 20.0% |
| ! | ATTACAAGATCGATAAACAA+TGG | + | tig0043948:4829-4848 | Msa1464200:intergenic | 25.0% |
| !!! | TTTTATTTTGAGCGAACTTA+TGG | + | tig0043948:5073-5092 | Msa1464200:intergenic | 25.0% |
| !!! | ACTATTTGAGTTGCTTATAT+TGG | - | tig0043948:5730-5749 | Msa1464200:intron | 25.0% |
| !! | CAAGAATAAACTAGAAGTTT+TGG | - | tig0043948:6027-6046 | Msa1464200:intron | 25.0% |
| ! | TAATGTTGCAATAAATTCGA+GGG | + | tig0043948:6222-6241 | Msa1464200:intergenic | 25.0% |
| ! | AATTAAATATATTGGGAGAC+AGG | - | tig0043948:6255-6274 | Msa1464200:CDS | 25.0% |
| !!! | TTTATTTTGACTAAATGTGC+AGG | + | tig0043948:6404-6423 | Msa1464200:intergenic | 25.0% |
| !! | TCAAAAGTTAATTTTCAGTG+TGG | - | tig0043948:6525-6544 | Msa1464200:intron | 25.0% |
| !! | ATTTGGGATTGAATATTGAT+TGG | - | tig0043948:6585-6604 | Msa1464200:intron | 25.0% |
| !! | TTTGGGATTGAATATTGATT+GGG | - | tig0043948:6586-6605 | Msa1464200:intron | 25.0% |
| !!! | TAGTTAAATTTTGAGGGATT+TGG | - | tig0043948:6949-6968 | Msa1464200:intron | 25.0% |
| ! | TTGTGAATGTATATAACCAT+TGG | - | tig0043948:7007-7026 | Msa1464200:intron | 25.0% |
| ! | ACCTGTTATAACGAAATAAA+TGG | - | tig0043948:7106-7125 | Msa1464200:intron | 25.0% |
| ! | ACCATTTATTTCGTTATAAC+AGG | + | tig0043948:7110-7129 | Msa1464200:intergenic | 25.0% |
| ! | TGATTGTGACAAAAATACAA+AGG | + | tig0043948:7161-7180 | Msa1464200:intergenic | 25.0% |
| !! | GAAATTTAGAATTGTACGTT+TGG | - | tig0043948:7181-7200 | Msa1464200:intron | 25.0% |
| ! | AAACAAGTCATTTAAAAGCA+TGG | - | tig0043948:7237-7256 | Msa1464200:intron | 25.0% |
| ! | CATAAAAAATATGAGGGAAA+AGG | + | tig0043948:7475-7494 | Msa1464200:intergenic | 25.0% |
| ! | TTAGAAAAAAGATGGAATGT+TGG | + | tig0043948:7642-7661 | Msa1464200:intergenic | 25.0% |
| ! | TCATTGTCTTAGAAAAAAGA+TGG | + | tig0043948:7650-7669 | Msa1464200:intergenic | 25.0% |
| !!! | GTGTTTAAACATCTCTTTTT+TGG | - | tig0043948:7874-7893 | Msa1464200:intron | 25.0% |
| ! | GAAAAATCGATAGAATAGAA+GGG | + | tig0043948:8068-8087 | Msa1464200:intergenic | 25.0% |
| ! | TGAAAAATCGATAGAATAGA+AGG | + | tig0043948:8069-8088 | Msa1464200:intergenic | 25.0% |
| !! | TCAAGTTGTGAAGATTATAA+GGG | + | tig0043948:8098-8117 | Msa1464200:intergenic | 25.0% |
| !! | ATCAAGTTGTGAAGATTATA+AGG | + | tig0043948:8099-8118 | Msa1464200:intergenic | 25.0% |
| !! | TCACAACTTGATTTTTATAC+AGG | - | tig0043948:8107-8126 | Msa1464200:intron | 25.0% |
| TAGAAAAGATGTATTCACCA+TGG | - | tig0043948:4899-4918 | Msa1464200:CDS | 30.0% | |
| ACTTATACGGACAAAAATAG+CGG | + | tig0043948:5133-5152 | Msa1464200:intergenic | 30.0% | |
| !!! | AAGTACTGGTTTTTCTGTTT+TGG | + | tig0043948:5672-5691 | Msa1464200:intergenic | 30.0% |
| ! | ACAATTTTGTCACAATACCT+TGG | + | tig0043948:5758-5777 | Msa1464200:intergenic | 30.0% |
| !!! | TTCGTGAAGACTTTTTTTGT+GGG | + | tig0043948:5982-6001 | Msa1464200:intergenic | 30.0% |
| !!! | ATTCGTGAAGACTTTTTTTG+TGG | + | tig0043948:5983-6002 | Msa1464200:intergenic | 30.0% |
| ! | TTGAATGATCTTATTTGCTG+TGG | + | tig0043948:6109-6128 | Msa1464200:intergenic | 30.0% |
| ACAGCAAATAAGATCATTCA+AGG | - | tig0043948:6108-6127 | Msa1464200:intron | 30.0% | |
| AATGTTGCAATAAATTCGAG+GGG | + | tig0043948:6221-6240 | Msa1464200:intergenic | 30.0% | |
| GTAATGTTGCAATAAATTCG+AGG | + | tig0043948:6223-6242 | Msa1464200:intergenic | 30.0% | |
| ! | TGATTCCTAAAATTTAGCTC+TGG | + | tig0043948:6446-6465 | Msa1464200:intergenic | 30.0% |
| !! | AATTTTAGGAATCAGTTACG+TGG | - | tig0043948:6452-6471 | Msa1464200:intron | 30.0% |
| ACAATGTTGACAGAAACATA+TGG | + | tig0043948:6687-6706 | Msa1464200:intergenic | 30.0% | |
| CAAGGTTTATTATATGGTCA+AGG | + | tig0043948:6876-6895 | Msa1464200:intergenic | 30.0% | |
| ! | AAATGAGTTGCTCATTTTAG+AGG | - | tig0043948:7048-7067 | Msa1464200:intron | 30.0% |
| TTAGAATTGTACGTTTGGAT+TGG | - | tig0043948:7186-7205 | Msa1464200:intron | 30.0% | |
| ATTACTTGCTTCACTGAAAT+AGG | + | tig0043948:7415-7434 | Msa1464200:intergenic | 30.0% | |
| TATGAGGGAAAAGGATAAAT+TGG | + | tig0043948:7466-7485 | Msa1464200:intergenic | 30.0% | |
| ! | CAAACTTTTCAGTTGTACTT+AGG | - | tig0043948:7588-7607 | Msa1464200:intron | 30.0% |
| ! | TTTTCAGTTGTACTTAGGTT+AGG | - | tig0043948:7593-7612 | Msa1464200:intron | 30.0% |
| TTTCAGTTGTACTTAGGTTA+GGG | - | tig0043948:7594-7613 | Msa1464200:intron | 30.0% | |
| !! | ACAAACTTGCTCTAAAGTTA+TGG | - | tig0043948:7744-7763 | Msa1464200:intron | 30.0% |
| !! | CAAACTTGCTCTAAAGTTAT+GGG | - | tig0043948:7745-7764 | Msa1464200:intron | 30.0% |
| GTTTGCTTGTAATTGTATAG+CGG | - | tig0043948:7896-7915 | Msa1464200:intron | 30.0% | |
| CAAGTTGTGAAGATTATAAG+GGG | + | tig0043948:8097-8116 | Msa1464200:intergenic | 30.0% | |
| ! | TTTTTATACAGGTCCAGTTT+TGG | - | tig0043948:8118-8137 | Msa1464200:intron | 30.0% |
| ! | TTTTATACAGGTCCAGTTTT+GGG | - | tig0043948:8119-8138 | Msa1464200:intron | 30.0% |
| AATGTTGATCGACAATTCTT+TGG | + | tig0043948:8247-8266 | Msa1464200:intergenic | 30.0% | |
| AAGAATTGTCGATCAACATT+CGG | - | tig0043948:8247-8266 | Msa1464200:intron | 30.0% | |
| ATGATGCAATGTATTCTTCT+TGG | + | tig0043948:8328-8347 | Msa1464200:intergenic | 30.0% | |
| ATCTTACAGTTTGGAAAGAT+TGG | - | tig0043948:8679-8698 | Msa1464200:CDS | 30.0% | |
| ATCGATAAACAATGGCTACA+AGG | + | tig0043948:4821-4840 | Msa1464200:intergenic | 35.0% | |
| TACATTTGACATCAAGCAGA+TGG | + | tig0043948:4961-4980 | Msa1464200:intergenic | 35.0% | |
| ACCTTATACACTTCCTATGA+GGG | - | tig0043948:5163-5182 | Msa1464200:CDS | 35.0% | |
| ACTAATAAAGAGTCCCTCAT+AGG | + | tig0043948:5179-5198 | Msa1464200:intergenic | 35.0% | |
| AAAGCTTAAACTGAAGTGTG+TGG | - | tig0043948:5215-5234 | Msa1464200:CDS | 35.0% | |
| AAGTGGTATCATGGTCATAA+AGG | + | tig0043948:5408-5427 | Msa1464200:intergenic | 35.0% | |
| ! | CACAGCACACATAAAAGTAT+GGG | + | tig0043948:5469-5488 | Msa1464200:intergenic | 35.0% |
| ACACAGCACACATAAAAGTA+TGG | + | tig0043948:5470-5489 | Msa1464200:intergenic | 35.0% | |
| !! | AGTTGCTTATATTGGTTCCA+AGG | - | tig0043948:5738-5757 | Msa1464200:intron | 35.0% |
| AATGCCGAAACGTTGTATAA+TGG | - | tig0043948:5894-5913 | Msa1464200:intron | 35.0% | |
| ATGCCGAAACGTTGTATAAT+GGG | - | tig0043948:5895-5914 | Msa1464200:intron | 35.0% | |
| AAACCAGAAGGGAAAATATG+TGG | + | tig0043948:6166-6185 | Msa1464200:intergenic | 35.0% | |
| ATGTTGCAATAAATTCGAGG+GGG | + | tig0043948:6220-6239 | Msa1464200:intergenic | 35.0% | |
| TTGTAGCAAAATGAGCCAAT+CGG | + | tig0043948:6283-6302 | Msa1464200:intergenic | 35.0% | |
| ACCTCTACAATAAATTCGAG+CGG | + | tig0043948:6309-6328 | Msa1464200:intergenic | 35.0% | |
| CTGCTTCTAGTAGCATAATT+GGG | - | tig0043948:6355-6374 | Msa1464200:intron | 35.0% | |
| ! | TGGTACTGAATTTGGAATGA+TGG | - | tig0043948:6472-6491 | Msa1464200:intron | 35.0% |
| !! | GCTTGATAATGAGCTTGATA+AGG | + | tig0043948:6618-6637 | Msa1464200:intergenic | 35.0% |
| TATCAAGCTCTCAAACATCT+TGG | - | tig0043948:6630-6649 | Msa1464200:intron | 35.0% | |
| !!! | GTGCAGCATTTTAGTTTTGT+AGG | - | tig0043948:6845-6864 | Msa1464200:intron | 35.0% |
| TAAATTATTCGCCCACTTTC+TGG | - | tig0043948:7434-7453 | Msa1464200:intron | 35.0% | |
| ! | ATTGGATTAGACCAGAAAGT+GGG | + | tig0043948:7448-7467 | Msa1464200:intergenic | 35.0% |
| ! | AATTGGATTAGACCAGAAAG+TGG | + | tig0043948:7449-7468 | Msa1464200:intergenic | 35.0% |
| TTCAGTTGTACTTAGGTTAG+GGG | - | tig0043948:7595-7614 | Msa1464200:intron | 35.0% | |
| GCGGTTAATAACAACTTATC+AGG | + | tig0043948:7930-7949 | Msa1464200:intergenic | 35.0% | |
| ! | AGTTGTTATTAACCGCCAAT+AGG | - | tig0043948:7934-7953 | Msa1464200:intron | 35.0% |
| !! | TAAAGTGAGGCAAGTTTTGA+TGG | - | tig0043948:8025-8044 | Msa1464200:intron | 35.0% |
| TTGTGAAGATTATAAGGGGA+TGG | + | tig0043948:8093-8112 | Msa1464200:intergenic | 35.0% | |
| CTGTCTCAGCTATTCATAAA+GGG | - | tig0043948:8359-8378 | Msa1464200:intron | 35.0% | |
| TGTCTCAGCTATTCATAAAG+GGG | - | tig0043948:8360-8379 | Msa1464200:intron | 35.0% | |
| AGGTAAAGATGTCAATGTCA+GGG | + | tig0043948:8392-8411 | Msa1464200:intergenic | 35.0% | |
| GAAAACGTTTCATCAGATAC+TGG | + | tig0043948:8415-8434 | Msa1464200:intergenic | 35.0% | |
| TCAGGAGAAACATTATGAGA+CGG | + | tig0043948:8643-8662 | Msa1464200:intergenic | 35.0% | |
| GAAAGGGTAATCTTACAGTT+TGG | - | tig0043948:8670-8689 | Msa1464200:CDS | 35.0% | |
| TGGAACAGATATATTCACCA+TGG | - | tig0043948:8699-8718 | Msa1464200:CDS | 35.0% | |
| AAACAATGGCTACAAGGTCA+AGG | + | tig0043948:4815-4834 | Msa1464200:intergenic | 40.0% | |
| TTTCTCGTGCAGATCGAAAA+TGG | - | tig0043948:4850-4869 | Msa1464200:CDS | 40.0% | |
| GCGGAAATTGCATAGTAAGT+CGG | + | tig0043948:5114-5133 | Msa1464200:intergenic | 40.0% | |
| GGTGAAGCTTTGCACTTATA+CGG | + | tig0043948:5146-5165 | Msa1464200:intergenic | 40.0% | |
| CACCTTATACACTTCCTATG+AGG | - | tig0043948:5162-5181 | Msa1464200:CDS | 40.0% | |
| ! | TCCCTCATAGGAAGTGTATA+AGG | + | tig0043948:5167-5186 | Msa1464200:intergenic | 40.0% |
| !! | AGGATTTTGAGGAACTGAAG+TGG | + | tig0043948:5425-5444 | Msa1464200:intergenic | 40.0% |
| CGTCCCATTATACAACGTTT+CGG | + | tig0043948:5901-5920 | Msa1464200:intergenic | 40.0% | |
| ! | CGAAACGTTGTATAATGGGA+CGG | - | tig0043948:5899-5918 | Msa1464200:intron | 40.0% |
| CTTGAAGATGTTGTCTATGC+TGG | + | tig0043948:6011-6030 | Msa1464200:intergenic | 40.0% | |
| TGGAGGTTGCAAAGAAATGA+TGG | + | tig0043948:6146-6165 | Msa1464200:intergenic | 40.0% | |
| CTCAAGGATACAAACCAGAA+GGG | + | tig0043948:6177-6196 | Msa1464200:intergenic | 40.0% | |
| ! | GAGTATTTTGCATTGCCTCA+AGG | + | tig0043948:6193-6212 | Msa1464200:intergenic | 40.0% |
| TGTAGCAAAATGAGCCAATC+GGG | + | tig0043948:6282-6301 | Msa1464200:intergenic | 40.0% | |
| CCTCTACAATAAATTCGAGC+GGG | + | tig0043948:6308-6327 | Msa1464200:intergenic | 40.0% | |
| TAGAGGTTAAGCAATCTACG+AGG | - | tig0043948:6322-6341 | Msa1464200:intron | 40.0% | |
| GCTGCTTCTAGTAGCATAAT+TGG | - | tig0043948:6354-6373 | Msa1464200:intron | 40.0% | |
| TTCTAGTAGCATAATTGGGC+CGG | - | tig0043948:6359-6378 | Msa1464200:intron | 40.0% | |
| ! | CTCAGCCAGAGCTAAATTTT+AGG | - | tig0043948:6438-6457 | Msa1464200:intron | 40.0% |
| ! | CAGTTACGTGGTACTGAATT+TGG | - | tig0043948:6464-6483 | Msa1464200:intron | 40.0% |
| GGAATGATGGTTACTTCACA+TGG | - | tig0043948:6485-6504 | Msa1464200:intron | 40.0% | |
| ! | AGAGTTCTGACAGTAACCAA+TGG | + | tig0043948:7026-7045 | Msa1464200:intergenic | 40.0% |
| !! | TTTTGTGTTGCTACGGAGTT+TGG | - | tig0043948:7214-7233 | Msa1464200:intron | 40.0% |
| AGGTTCAACTGGAGTTACAT+CGG | + | tig0043948:7275-7294 | Msa1464200:intergenic | 40.0% | |
| TCCAGTTGAACCTATTCAAC+AGG | - | tig0043948:7282-7301 | Msa1464200:intron | 40.0% | |
| CCAGTTGAACCTATTCAACA+GGG | - | tig0043948:7283-7302 | Msa1464200:intron | 40.0% | |
| AACCTATTCAACAGGGACAA+TGG | - | tig0043948:7290-7309 | Msa1464200:intron | 40.0% | |
| ACCTATTCAACAGGGACAAT+GGG | - | tig0043948:7291-7310 | Msa1464200:intron | 40.0% | |
| ! | ACAATGGGTAAGTCTGCTTT+TGG | - | tig0043948:7306-7325 | Msa1464200:intron | 40.0% |
| ! | TGCTTTTGGACTTAATCCGT+AGG | - | tig0043948:7320-7339 | Msa1464200:intron | 40.0% |
| ! | GCTTTTGGACTTAATCCGTA+GGG | - | tig0043948:7321-7340 | Msa1464200:intron | 40.0% |
| TTGAACCTCAGCAAAGAGAA+AGG | - | tig0043948:7380-7399 | Msa1464200:intron | 40.0% | |
| CTTCATGTGTATGAATAGCC+CGG | - | tig0043948:7504-7523 | Msa1464200:intron | 40.0% | |
| ! | ATCCGATGCAGTGCTTTATT+CGG | - | tig0043948:7538-7557 | Msa1464200:intron | 40.0% |
| TTAGGGGCCATGTAAGTATT+CGG | - | tig0043948:7611-7630 | Msa1464200:intron | 40.0% | |
| !! | GTTCAAACTTGCTGTCCTAT+TGG | + | tig0043948:7952-7971 | Msa1464200:intergenic | 40.0% |
| AACCAAATTGTCGATCAAGC+CGG | - | tig0043948:8194-8213 | Msa1464200:intron | 40.0% | |
| ! | GATCGACAATTCTTTGGAGA+CGG | + | tig0043948:8241-8260 | Msa1464200:intergenic | 40.0% |
| ! | TGGAAATGGTGCTAACAAGA+CGG | + | tig0043948:8294-8313 | Msa1464200:intergenic | 40.0% |
| AATGTATTCTTCTTGGCGAG+TGG | + | tig0043948:8321-8340 | Msa1464200:intergenic | 40.0% | |
| CCTTTATGAATAGCTGAGAC+AGG | + | tig0043948:8361-8380 | Msa1464200:intergenic | 40.0% | |
| CCTGTCTCAGCTATTCATAA+AGG | - | tig0043948:8358-8377 | Msa1464200:intron | 40.0% | |
| GAGGTAAAGATGTCAATGTC+AGG | + | tig0043948:8393-8412 | Msa1464200:intergenic | 40.0% | |
| AACGTTTCATCAGATACTGG+AGG | + | tig0043948:8412-8431 | Msa1464200:intergenic | 40.0% | |
| GTCTCATAATGTTTCTCCTG+AGG | - | tig0043948:8642-8661 | Msa1464200:CDS | 40.0% | |
| GAGTGGATAAGTGTAGTCCA+TGG | + | tig0043948:4919-4938 | Msa1464200:intergenic | 45.0% | |
| TGACATCAAGCAGATGGCAA+AGG | + | tig0043948:4955-4974 | Msa1464200:intergenic | 45.0% | |
| TTTGAGCGAACTTATGGTCG+TGG | + | tig0043948:5067-5086 | Msa1464200:intergenic | 45.0% | |
| GAGGAACTGAAGTGGTATCA+TGG | + | tig0043948:5417-5436 | Msa1464200:intergenic | 45.0% | |
| CCAGAAGGGAAAATATGTGG+AGG | + | tig0043948:6163-6182 | Msa1464200:intergenic | 45.0% | |
| ! | CCTCCACATATTTTCCCTTC+TGG | - | tig0043948:6160-6179 | Msa1464200:CDS | 45.0% |
| CCTCAAGGATACAAACCAGA+AGG | + | tig0043948:6178-6197 | Msa1464200:intergenic | 45.0% | |
| !! | CCTTCTGGTTTGTATCCTTG+AGG | - | tig0043948:6175-6194 | Msa1464200:CDS | 45.0% |
| CCCGCTCGAATTTATTGTAG+AGG | - | tig0043948:6305-6324 | Msa1464200:CDS | 45.0% | |
| ATGTGCAGGTTTGAGCCTAT+TGG | + | tig0043948:6390-6409 | Msa1464200:intergenic | 45.0% | |
| !! | GGTGCAGTTTTGTGTTGCTA+CGG | - | tig0043948:7207-7226 | Msa1464200:intron | 45.0% |
| GGTTCAACTGGAGTTACATC+GGG | + | tig0043948:7274-7293 | Msa1464200:intergenic | 45.0% | |
| CCCTGTTGAATAGGTTCAAC+TGG | + | tig0043948:7286-7305 | Msa1464200:intergenic | 45.0% | |
| ACCCATTGTCCCTGTTGAAT+AGG | + | tig0043948:7295-7314 | Msa1464200:intergenic | 45.0% | |
| TTGAAGAGCTCGAGACATCT+CGG | - | tig0043948:7344-7363 | Msa1464200:intron | 45.0% | |
| GTGATCCTTTCTCTTTGCTG+AGG | + | tig0043948:7388-7407 | Msa1464200:intergenic | 45.0% | |
| CGGGCTATTCATACACATGA+AGG | + | tig0043948:7506-7525 | Msa1464200:intergenic | 45.0% | |
| !! | CTCCGAATAAAGCACTGCAT+CGG | + | tig0043948:7543-7562 | Msa1464200:intergenic | 45.0% |
| GGAGCAACCGAATACTTACA+TGG | + | tig0043948:7621-7640 | Msa1464200:intergenic | 45.0% | |
| !! | CAAACTTGCTGTCCTATTGG+CGG | + | tig0043948:7949-7968 | Msa1464200:intergenic | 45.0% |
| CACTTTACCAGCACATTTGC+TGG | + | tig0043948:8012-8031 | Msa1464200:intergenic | 45.0% | |
| ! | GCAAATGTGCTGGTAAAGTG+AGG | - | tig0043948:8012-8031 | Msa1464200:intron | 45.0% |
| !! | GAACTTGTTGAGCCCAAAAC+TGG | + | tig0043948:8134-8153 | Msa1464200:intergenic | 45.0% |
| ! | ATCCGGCTTGATCGACAATT+TGG | + | tig0043948:8199-8218 | Msa1464200:intergenic | 45.0% |
| CTAACAAGACGGCTACATGT+TGG | + | tig0043948:8283-8302 | Msa1464200:intergenic | 45.0% | |
| ! | TGAGTTTTCCCCTTCAGTGT+TGG | + | tig0043948:8445-8464 | Msa1464200:intergenic | 45.0% |
| !! | GCCTTGCTTTTGAGTGTCAA+GGG | + | tig0043948:8520-8539 | Msa1464200:intergenic | 45.0% |
| !! | AGCCTTGCTTTTGAGTGTCA+AGG | + | tig0043948:8521-8540 | Msa1464200:intergenic | 45.0% |
| TCAAAAGCAAGGCTCCTAGA+TGG | - | tig0043948:8527-8546 | Msa1464200:intron | 45.0% | |
| CAAAAGCAAGGCTCCTAGAT+GGG | - | tig0043948:8528-8547 | Msa1464200:intron | 45.0% | |
| TAACACGTCCCTTGAAGTCT+AGG | + | tig0043948:8576-8595 | Msa1464200:intergenic | 45.0% | |
| TTTCTCCTGAGGAGCAAGAA+AGG | - | tig0043948:8653-8672 | Msa1464200:CDS | 45.0% | |
| TTCTCCTGAGGAGCAAGAAA+GGG | - | tig0043948:8654-8673 | Msa1464200:CDS | 45.0% | |
| ATTACCCTTTCTTGCTCCTC+AGG | + | tig0043948:8661-8680 | Msa1464200:intergenic | 45.0% | |
| GAGTGGATAAGAGTAGTCCA+TGG | + | tig0043948:8719-8738 | Msa1464200:intergenic | 45.0% | |
| !!! | ATCTATTTTTTTTTTAATAT+AGG | - | tig0043948:5564-5583 | Msa1464200:CDS | 5.0% |
| TAACACGCCCCATGACATCA+GGG | + | tig0043948:4773-4792 | Msa1464200:intergenic | 50.0% | |
| TTAACACGCCCCATGACATC+AGG | + | tig0043948:4774-4793 | Msa1464200:intergenic | 50.0% | |
| GCCACTCTCGCAGTTACTAA+GGG | - | tig0043948:4872-4891 | Msa1464200:CDS | 50.0% | |
| TCAAGCAGATGGCAAAGGCT+TGG | + | tig0043948:4950-4969 | Msa1464200:intergenic | 50.0% | |
| ! | CAGGTTTGAGCCTATTGGCT+GGG | + | tig0043948:6385-6404 | Msa1464200:intergenic | 50.0% |
| TCTCGAGCTCTTCAACCCTA+CGG | + | tig0043948:7339-7358 | Msa1464200:intergenic | 50.0% | |
| AGCACTGCATCGGATGATCA+CGG | + | tig0043948:7533-7552 | Msa1464200:intergenic | 50.0% | |
| ! | CGATGCAGTGCTTTATTCGG+AGG | - | tig0043948:7541-7560 | Msa1464200:intron | 50.0% |
| TCTCAAGCCAGCAAATGTGC+TGG | - | tig0043948:8002-8021 | Msa1464200:intron | 50.0% | |
| TGAACTGCAGCATCATCTGG+AGG | + | tig0043948:8175-8194 | Msa1464200:intergenic | 50.0% | |
| GGTTGAACTGCAGCATCATC+TGG | + | tig0043948:8178-8197 | Msa1464200:intergenic | 50.0% | |
| ! | TGGCGAGTGGACTTTGGAAA+TGG | + | tig0043948:8308-8327 | Msa1464200:intergenic | 50.0% |
| ! | TCTTCTTGGCGAGTGGACTT+TGG | + | tig0043948:8314-8333 | Msa1464200:intergenic | 50.0% |
| TTCTCCTTCGCCAACACTGA+AGG | - | tig0043948:8432-8451 | Msa1464200:intron | 50.0% | |
| TCTCCTTCGCCAACACTGAA+GGG | - | tig0043948:8433-8452 | Msa1464200:intron | 50.0% | |
| !! | TAGCTCTGATTGGCTTGCAG+AGG | + | tig0043948:8482-8501 | Msa1464200:intergenic | 50.0% |
| !! | TCAGTCCTGGTAGCTCTGAT+TGG | + | tig0043948:8492-8511 | Msa1464200:intergenic | 50.0% |
| GCCCTTGACACTCAAAAGCA+AGG | - | tig0043948:8516-8535 | Msa1464200:intron | 50.0% | |
| TTGCACTGCTCATCCCATCT+AGG | + | tig0043948:8544-8563 | Msa1464200:intergenic | 50.0% | |
| TAGATGGGATGAGCAGTGCA+AGG | - | tig0043948:8543-8562 | Msa1464200:intron | 50.0% | |
| AGATGGGATGAGCAGTGCAA+GGG | - | tig0043948:8544-8563 | Msa1464200:intron | 50.0% | |
| GGTTGGCACCTAGACTTCAA+GGG | - | tig0043948:8565-8584 | Msa1464200:intron | 50.0% | |
| CTTCAAGGGACGTGTTACAG+TGG | - | tig0043948:8579-8598 | Msa1464200:CDS | 50.0% | |
| AGAAGCCAAGCAGATGGCAA+AGG | + | tig0043948:8755-8774 | Msa1464200:intergenic | 50.0% | |
| AAAGGCAGAAGCCAAGCAGA+TGG | + | tig0043948:8761-8780 | Msa1464200:intergenic | 50.0% | |
| ! | TGGTTGGTGCCCTGATGTCA+TGG | - | tig0043948:4761-4780 | Msa1464200:CDS | 55.0% |
| ! | GGTTGGTGCCCTGATGTCAT+GGG | - | tig0043948:4762-4781 | Msa1464200:CDS | 55.0% |
| ! | GTTGGTGCCCTGATGTCATG+GGG | - | tig0043948:4763-4782 | Msa1464200:CDS | 55.0% |
| GGCCACTCTCGCAGTTACTA+AGG | - | tig0043948:4871-4890 | Msa1464200:CDS | 55.0% | |
| GCCCTTAGTAACTGCGAGAG+TGG | + | tig0043948:4876-4895 | Msa1464200:intergenic | 55.0% | |
| CTCTCGCAGTTACTAAGGGC+TGG | - | tig0043948:4876-4895 | Msa1464200:CDS | 55.0% | |
| AAGGCTTGGAAGGCAGAGAG+TGG | + | tig0043948:4936-4955 | Msa1464200:intergenic | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | + | tig0043948:4946-4965 | Msa1464200:intergenic | 55.0% | |
| ATTGGGAGACAGGACCCGAT+TGG | - | tig0043948:6265-6284 | Msa1464200:CDS | 55.0% | |
| GCAATCTACGAGGCGCATAG+AGG | - | tig0043948:6332-6351 | Msa1464200:intron | 55.0% | |
| ! | TTTGAGCCTATTGGCTGGGC+CGG | + | tig0043948:6381-6400 | Msa1464200:intergenic | 55.0% |
| GCAGGTTTGAGCCTATTGGC+TGG | + | tig0043948:6386-6405 | Msa1464200:intergenic | 55.0% | |
| CACTGCATCGGATGATCACG+GGG | + | tig0043948:7531-7550 | Msa1464200:intergenic | 55.0% | |
| GCACTGCATCGGATGATCAC+GGG | + | tig0043948:7532-7551 | Msa1464200:intergenic | 55.0% | |
| CTCCTTCGCCAACACTGAAG+GGG | - | tig0043948:8434-8453 | Msa1464200:intron | 55.0% | |
| !! | TTCCCCTTCAGTGTTGGCGA+AGG | + | tig0043948:8439-8458 | Msa1464200:intergenic | 55.0% |
| GCAAGCCAATCAGAGCTACC+AGG | - | tig0043948:8484-8503 | Msa1464200:intron | 55.0% | |
| ! | GGGTTGGCACCTAGACTTCA+AGG | - | tig0043948:8564-8583 | Msa1464200:intron | 55.0% |
| GATGGCAAAGGCTTGGAAGG+CGG | + | tig0043948:4943-4962 | Msa1464200:intergenic | 55.0% | |
| GCAGATGGCAAAGGCTTGGA+AGG | + | tig0043948:4946-4965 | Msa1464200:intergenic | 55.0% | |
| CCAAGCAGATGGCAAAGGCT+TGG | + | tig0043948:8750-8769 | Msa1464200:intergenic | 55.0% | |
| CCAAGCCTTTGCCATCTGCT+TGG | - | tig0043948:4947-4966 | Msa1464200:CDS | 55.0% | |
| TGAGGTTCAACAGCACGCGC+AGG | + | tig0043948:7370-7389 | Msa1464200:intergenic | 60.0% | |
| ATCGGATGATCACGGGGACC+GGG | + | tig0043948:7525-7544 | Msa1464200:intergenic | 60.0% | |
| CATCGGATGATCACGGGGAC+CGG | + | tig0043948:7526-7545 | Msa1464200:intergenic | 60.0% | |
| GTCAAGGGCTCACTCAGTCC+TGG | + | tig0043948:8505-8524 | Msa1464200:intergenic | 60.0% | |
| GGGATGAGCAGTGCAAGGGT+TGG | - | tig0043948:8548-8567 | Msa1464200:intron | 60.0% | |
| AAGGCTTGGAAGGCGGAGAG+TGG | + | tig0043948:8736-8755 | Msa1464200:intergenic | 60.0% | |
| ATTGGGCCGGCCCAGCCAAT+AGG | - | tig0043948:6372-6391 | Msa1464200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043948 | gene | 4756 | 8792 | 4756 | ID=Msa1464200;Name=Msa1464200 |
| tig0043948 | mRNA | 4756 | 8792 | 4756 | ID=Msa1464200-mRNA-1;Parent=Msa1464200;Name=Msa1464200-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|5|0|435 |
| tig0043948 | exon | 8571 | 8792 | 8571 | ID=Msa1464200-mRNA-1:exon:24341;Parent=Msa1464200-mRNA-1 |
| tig0043948 | exon | 6119 | 6334 | 6119 | ID=Msa1464200-mRNA-1:exon:24340;Parent=Msa1464200-mRNA-1 |
| tig0043948 | exon | 5939 | 6026 | 5939 | ID=Msa1464200-mRNA-1:exon:24339;Parent=Msa1464200-mRNA-1 |
| tig0043948 | exon | 5515 | 5632 | 5515 | ID=Msa1464200-mRNA-1:exon:24338;Parent=Msa1464200-mRNA-1 |
| tig0043948 | exon | 4756 | 5419 | 4756 | ID=Msa1464200-mRNA-1:exon:24337;Parent=Msa1464200-mRNA-1 |
| tig0043948 | CDS | 8571 | 8792 | 8571 | ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1 |
| tig0043948 | CDS | 6119 | 6334 | 6119 | ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1 |
| tig0043948 | CDS | 5939 | 6026 | 5939 | ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1 |
| tig0043948 | CDS | 5515 | 5632 | 5515 | ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1 |
| tig0043948 | CDS | 4756 | 5419 | 4756 | ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
