AlfalfaGEDB | Msa1464200

M. sativa cultivar zhongmu-4 / Msa1464200

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464200	AET03929.1	87.464	351	22	2	89	435	1	333	0.0	616

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464200	sp\|Q8GVE5\|TLP2_ARATH	43.928	387	169	11	81	435	20	390	9.47e-86	270
Msa1464200	sp\|Q8GVE5\|TLP2_ARATH	51.429	70	33	1	4	73	317	385	1.82e-11	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464200	G7LES6	87.464	351	22	2	89	435	1	333	0.0	616

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TFs/TRs:

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Gene ID	Type	Classification
Msa1464200	TF	TUB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1202900	Msa1464200	0.813355	2.669931e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464200	MtrunA17_Chr8g0373351	77.522	347	22	2	89	435	1	291	0.0	518
Msa1464200	MtrunA17_Chr8g0373351	56.061	66	28	1	10	75	224	288	7.98e-13	68.9
Msa1464200	MtrunA17_Chr8g0373001	57.513	386	118	10	87	435	33	409	1.21e-130	383
Msa1464200	MtrunA17_Chr8g0373001	60.000	70	27	1	4	73	336	404	4.39e-16	79.7
Msa1464200	MtrunA17_Chr5g0404321	49.751	402	146	11	77	435	25	413	9.32e-115	342
Msa1464200	MtrunA17_Chr5g0404321	57.143	70	29	1	4	73	340	408	1.43e-14	75.1
Msa1464200	MtrunA17_Chr8g0373361	49.880	417	134	10	75	430	2	404	3.49e-108	325
Msa1464200	MtrunA17_Chr8g0373331	46.753	385	111	12	78	429	23	346	2.43e-88	272
Msa1464200	MtrunA17_Chr8g0373331	54.795	73	27	3	4	71	274	345	4.62e-12	67.0
Msa1464200	MtrunA17_Chr1g0155301	41.389	360	160	9	110	435	77	419	3.28e-72	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464200	AT2G18280.2	43.928	387	169	11	81	435	20	390	9.62e-87	270
Msa1464200	AT2G18280.2	51.429	70	33	1	4	73	317	385	1.85e-12	68.9
Msa1464200	AT2G18280.1	43.928	387	169	11	81	435	20	390	9.62e-87	270
Msa1464200	AT2G18280.1	51.429	70	33	1	4	73	317	385	1.85e-12	68.9
Msa1464200	AT1G47270.3	40.526	380	151	12	100	435	37	385	2.04e-71	230
Msa1464200	AT1G47270.3	49.315	73	33	2	4	73	309	380	7.12e-12	67.0
Msa1464200	AT1G47270.2	40.584	377	155	11	100	435	61	409	3.18e-71	231
Msa1464200	AT1G47270.2	49.315	73	33	2	4	73	333	404	8.94e-12	67.0
Msa1464200	AT1G47270.1	40.584	377	155	11	100	435	62	410	3.48e-71	230
Msa1464200	AT1G47270.1	49.315	73	33	2	4	73	334	405	9.05e-12	67.0

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Find 112 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTCATTTAAAAGCA+TGG	0.499585	tig0043948:-6289	Msa1464200:CDS
AAACAATGGCTACAAGGTCA+AGG	0.605692	tig0043948:+8714	Msa1464200:intergenic
AAAGGCAGAAGCCAAGCAGA+TGG	0.561114	tig0043948:+4768	Msa1464200:intergenic
AACCAAATTGTCGATCAAGC+CGG	0.584672	tig0043948:-5332	Msa1464200:CDS
AACCTATTCAACAGGGACAA+TGG	0.551901	tig0043948:-6236	Msa1464200:CDS
AACGTTTCATCAGATACTGG+AGG	0.677184	tig0043948:+5117	Msa1464200:intergenic
AAGAATTGTCGATCAACATT+CGG	0.495521	tig0043948:-5279	Msa1464200:CDS
AAGGCTTGGAAGGCAGAGAG+TGG	0.622272	tig0043948:+8593	Msa1464200:intergenic
AAGGCTTGGAAGGCGGAGAG+TGG	0.587325	tig0043948:+4793	Msa1464200:intergenic
AATGTATTCTTCTTGGCGAG+TGG	0.627171	tig0043948:+5208	Msa1464200:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAAAGATGTATTCACCA+TGG	-	tig0043948:4899-4918	Msa1464200:CDS	30.0%
ACTTATACGGACAAAAATAG+CGG	+	tig0043948:5133-5152	Msa1464200:intergenic	30.0%
ACAGCAAATAAGATCATTCA+AGG	-	tig0043948:6108-6127	Msa1464200:intron	30.0%
AATGTTGCAATAAATTCGAG+GGG	+	tig0043948:6221-6240	Msa1464200:intergenic	30.0%
GTAATGTTGCAATAAATTCG+AGG	+	tig0043948:6223-6242	Msa1464200:intergenic	30.0%
ACAATGTTGACAGAAACATA+TGG	+	tig0043948:6687-6706	Msa1464200:intergenic	30.0%
CAAGGTTTATTATATGGTCA+AGG	+	tig0043948:6876-6895	Msa1464200:intergenic	30.0%
TTAGAATTGTACGTTTGGAT+TGG	-	tig0043948:7186-7205	Msa1464200:intron	30.0%
ATTACTTGCTTCACTGAAAT+AGG	+	tig0043948:7415-7434	Msa1464200:intergenic	30.0%
TATGAGGGAAAAGGATAAAT+TGG	+	tig0043948:7466-7485	Msa1464200:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0043948	gene	4756	8792	4756	ID=Msa1464200;Name=Msa1464200
tig0043948	mRNA	4756	8792	4756	ID=Msa1464200-mRNA-1;Parent=Msa1464200;Name=Msa1464200-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0\|0\|0\|1\|1\|1\|5\|0\|435
tig0043948	exon	8571	8792	8571	ID=Msa1464200-mRNA-1:exon:24341;Parent=Msa1464200-mRNA-1
tig0043948	exon	6119	6334	6119	ID=Msa1464200-mRNA-1:exon:24340;Parent=Msa1464200-mRNA-1
tig0043948	exon	5939	6026	5939	ID=Msa1464200-mRNA-1:exon:24339;Parent=Msa1464200-mRNA-1
tig0043948	exon	5515	5632	5515	ID=Msa1464200-mRNA-1:exon:24338;Parent=Msa1464200-mRNA-1
tig0043948	exon	4756	5419	4756	ID=Msa1464200-mRNA-1:exon:24337;Parent=Msa1464200-mRNA-1
tig0043948	CDS	8571	8792	8571	ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1
tig0043948	CDS	6119	6334	6119	ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1
tig0043948	CDS	5939	6026	5939	ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1
tig0043948	CDS	5515	5632	5515	ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1
tig0043948	CDS	4756	5419	4756	ID=Msa1464200-mRNA-1:cds;Parent=Msa1464200-mRNA-1

Gene Sequence

>Msa1464200

CACAATGGTTGGTGCCCTGATGTCATGGGGCGTGTTAAAGTGACATCTGTGAAAAACCTTGACCTTGTAGCCATTGTTTATCGATCTTGTAATTTTTCTCGTGCAGATCGAAAATGGCCACTCTCGCAGTTACTAAGGGCTGGTAGAAAAGATGTATTCACCATGGACTACACTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGATGTCAAATTTTTGTGTTGCTACGGAGTTTGGAAACAAGTCATTTAAAAGCATGGAAAATGTTGCTCCCGATGTAACTCCAGTTGAACCTATTCAACAGGGACAATGGGTAAGTCTGCTTTTGGACTTAATCCGTAGGGTTGAAGAGCTCGAGACATCTCGGCCTGCGCGTGCTGTTGAACCTCAGCAAAGAGAAAGGATCACATTTCCTATTTCAGTGAAGCAACCCGGTCCCCGTGATCATCCGATGCAGTGCTTTATTCGGAGGAACAAAATGAGAGAATCATCACTTCAAACTTTTCAGTTGTACTTAGCGGCGAATGAACCTGATAAGTTGTTATTAACCGCCAATAGGACAGCAAGTTTGAACTTTGTCATATTCTTCGCTGCAAACAATTTCTCTCAAGCCAGCAAATGTGCTGGTAAAGTGAGGTCCAGTTTTGGGCTCAACAAGTTCTTTGTATACGACAATCAACCTCCAGATGATGCTGCAGTTCAACCAAATTGTCGATCAAGCCGGATATTTAATAATAAGATATCACCGTCTCCAAAGAATTGTCGATCAACATTCGGAAGAATTGCTCCAACATGTAGCCGTCTTGTTAGCACCATTTCCAAAGTCCACTCGCCAAGAAGAATACATTGCATCATGAATTCTATACCTGTCTCAGCTATTCATAAAGGGGAAAATGCCCTGACATTGACATCTTTACCTCCAGTATCTGATGAAACGTTTTCTCCTTCGCCAACACTGAAGGGGAAAACTCAAATGAGAGATTCATCCTCTGCAAGCCAATCAGAGCTACCAGGACTGAGTGAGCCCTTGACACTCAAAAGCAAGGCTCCTAGATGGGATGAGCAGTGCAAGGGTTGGCACCTAGACTTCAAGGGACGTGTTACAGTGGCATCTGTGAAAAACTTTCAATTTGTAGCTGCTGTTGATCCGTCTCATAATGTTTCTCCTGAGGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAACAGATATATTCACCATGGACTACTCTTATCCACTCTCCGCCTTCCAAGCCTTTGCCATCTGCTTGGCTTCTGCCTTTTCCGCGCCCTAA

Protein sequence

>Msa1464200

HNGWCPDVMGRVKVTSVKNLDLVAIVYRSCNFSRADRKWPLSQLLRAGRKDVFTMDYTYPLSAFQAFAICLMSNFCVATEFGNKSFKSMENVAPDVTPVEPIQQGQWVSLLLDLIRRVEELETSRPARAVEPQQRERITFPISVKQPGPRDHPMQCFIRRNKMRESSLQTFQLYLAANEPDKLLLTANRTASLNFVIFFAANNFSQASKCAGKVRSSFGLNKFFVYDNQPPDDAAVQPNCRSSRIFNNKISPSPKNCRSTFGRIAPTCSRLVSTISKVHSPRRIHCIMNSIPVSAIHKGENALTLTSLPPVSDETFSPSPTLKGKTQMRDSSSASQSELPGLSEPLTLKSKAPRWDEQCKGWHLDFKGRVTVASVKNFQFVAAVDPSHNVSPEEQERVILQFGKIGTDIFTMDYSYPLSAFQAFAICLASAFSAP*