AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1204010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1204010 MtrunA17_Chr4g0053081 68.874 453 130 5 1 448 1 447 0.0 629
Msa1204010 MtrunA17_Chr4g0053091 66.228 456 124 5 1 447 1 435 0.0 591
Msa1204010 MtrunA17_Chr4g0053111 58.278 453 170 8 1 443 1 444 0.0 523
Msa1204010 MtrunA17_Chr8g0359251 58.186 452 174 8 1 447 1 442 2.12e-179 509
Msa1204010 MtrunA17_Chr8g0354371 56.195 452 182 9 1 447 1 441 7.37e-173 492
Msa1204010 MtrunA17_Chr4g0053061 54.881 461 185 11 1 448 29 479 7.79e-173 493
Msa1204010 MtrunA17_Chr3g0125001 56.793 449 176 10 1 447 1 433 3.45e-170 485
Msa1204010 MtrunA17_Chr8g0374911 54.725 455 187 10 1 444 22 468 1.92e-169 484
Msa1204010 MtrunA17_Chr8g0374641 56.920 448 171 11 1 438 1 436 4.13e-167 478
Msa1204010 MtrunA17_Chr4g0010381 54.989 451 182 11 1 444 1 437 5.21e-166 474
Msa1204010 MtrunA17_Chr4g0010361 54.923 457 181 11 1 447 1 442 1.17e-164 471
Msa1204010 MtrunA17_Chr4g0010121 54.945 455 181 10 1 444 40 481 1.70e-164 472
Msa1204010 MtrunA17_Chr4g0010331 54.425 452 184 10 1 447 1 435 1.06e-162 466
Msa1204010 MtrunA17_Chr4g0010311 53.642 453 186 11 1 444 1 438 2.24e-161 463
Msa1204010 MtrunA17_Chr3g0087221 53.159 459 186 12 1 444 1 445 1.11e-158 456
Msa1204010 MtrunA17_Chr7g0224131 53.846 455 185 12 1 447 1 438 1.46e-157 453
Msa1204010 MtrunA17_Chr4g0010351 50.904 387 170 9 1 379 1 375 6.29e-124 365
Msa1204010 MtrunA17_Chr3g0134041 39.535 430 244 7 27 447 26 448 1.29e-95 295
Msa1204010 MtrunA17_Chr3g0134121 38.877 463 251 11 3 448 5 452 9.24e-94 292
Msa1204010 MtrunA17_Chr3g0134071 38.914 442 244 8 21 444 19 452 1.90e-92 288
Msa1204010 MtrunA17_Chr3g0134111 38.478 460 254 11 4 448 7 452 1.52e-90 282
Msa1204010 MtrunA17_Chr3g0134091 37.961 461 259 9 3 449 5 452 3.12e-90 281
Msa1204010 MtrunA17_Chr3g0134061 35.654 474 267 11 3 451 4 464 3.87e-85 268
Msa1204010 MtrunA17_Chr5g0436621 33.824 476 246 10 24 443 20 482 1.66e-80 257
Msa1204010 MtrunA17_Chr3g0113181 35.294 459 240 10 24 443 26 466 4.39e-80 256
Msa1204010 MtrunA17_Chr3g0134101 36.916 428 240 9 27 444 42 449 1.47e-77 248
Msa1204010 MtrunA17_Chr8g0353901 56.190 210 87 3 236 442 20 227 3.20e-74 233
Msa1204010 MtrunA17_Chr4g0005941 32.389 494 262 9 8 443 4 483 1.15e-71 234
Msa1204010 MtrunA17_Chr8g0353891 53.881 219 94 5 1 217 1 214 2.94e-68 217
Msa1204010 MtrunA17_Chr4g0053051 78.906 128 27 0 320 447 4 131 8.43e-67 210
Msa1204010 MtrunA17_Chr6g0456591 51.402 214 93 5 1 213 15 218 1.82e-66 213
Msa1204010 MtrunA17_Chr4g0053071 67.123 146 48 0 302 447 1 146 3.75e-66 209
Msa1204010 MtrunA17_Chr6g0463321 45.662 219 83 3 196 414 1 183 1.48e-59 193
Msa1204010 MtrunA17_Chr7g0224121 46.000 200 99 6 9 203 2 197 1.17e-47 162
Msa1204010 MtrunA17_Chr6g0467861 29.204 452 274 12 27 443 64 504 1.50e-47 171
Msa1204010 MtrunA17_Chr6g0463331 52.817 142 58 3 56 188 19 160 1.79e-41 145
Msa1204010 MtrunA17_Chr3g0134131 29.766 299 145 3 103 401 54 287 4.42e-39 144
Msa1204010 MtrunA17_Chr7g0224101 50.000 140 60 4 210 342 12 148 3.24e-33 122
Msa1204010 MtrunA17_Chr4g0001861 30.102 392 238 19 64 438 56 428 4.01e-30 121
Msa1204010 MtrunA17_Chr8g0371821 27.692 390 242 17 64 436 56 422 4.41e-30 121
Msa1204010 MtrunA17_Chr8g0386141 30.548 347 204 13 64 396 59 382 5.55e-28 115
Msa1204010 MtrunA17_Chr2g0334001 28.647 377 242 18 64 428 56 417 6.35e-28 115
Msa1204010 MtrunA17_Chr3g0132001 27.151 372 245 10 64 428 66 418 4.27e-26 110
Msa1204010 MtrunA17_Chr3g0087401 25.123 406 251 13 61 432 51 437 3.37e-25 107
Msa1204010 MtrunA17_Chr4g0072041 24.374 439 288 15 26 436 30 452 4.07e-24 104
Msa1204010 MtrunA17_Chr7g0224391 27.344 384 254 10 59 434 63 429 1.66e-23 102
Msa1204010 MtrunA17_Chr4g0054081 24.208 442 266 18 28 428 27 440 4.43e-23 101
Msa1204010 MtrunA17_Chr2g0311401 28.472 288 191 11 151 428 5 287 4.25e-22 96.3
Msa1204010 MtrunA17_Chr1g0165671 25.339 442 255 20 32 434 41 446 2.88e-21 96.3
Msa1204010 MtrunA17_Chr3g0113821 27.103 321 206 10 29 333 24 332 6.07e-21 94.7
Msa1204010 MtrunA17_Chr6g0455341 25.114 438 281 15 29 436 32 452 1.46e-19 90.9
Msa1204010 MtrunA17_Chr3g0124341 27.974 454 259 23 29 434 29 462 8.36e-19 88.6
Msa1204010 MtrunA17_Chr7g0224111 42.202 109 37 2 339 447 1 83 9.48e-19 80.9
Msa1204010 MtrunA17_Chr1g0165661 23.529 408 272 17 61 450 61 446 1.30e-18 87.8
Msa1204010 MtrunA17_Chr1g0191081 23.929 397 263 14 31 409 31 406 1.78e-18 87.4
Msa1204010 MtrunA17_Chr6g0455361 24.353 464 300 13 3 436 7 449 2.22e-18 87.4
Msa1204010 MtrunA17_Chr8g0339641 24.878 410 255 14 29 396 24 422 5.52e-18 86.3
Msa1204010 MtrunA17_Chr6g0454761 25.208 361 231 12 63 399 552 897 1.77e-17 85.5
Msa1204010 MtrunA17_Chr6g0454761 25.281 356 236 11 63 399 65 409 4.89e-16 80.9
Msa1204010 MtrunA17_Chr7g0235531 25.515 388 248 18 62 429 56 422 6.92e-17 82.4
Msa1204010 MtrunA17_Chr7g0253541 26.933 401 258 15 62 436 58 449 9.24e-17 82.4
Msa1204010 MtrunA17_Chr3g0141851 25.806 279 189 8 60 329 57 326 1.01e-16 82.4
Msa1204010 MtrunA17_Chr7g0273721 22.477 436 297 13 32 443 25 443 1.76e-16 81.6
Msa1204010 MtrunA17_Chr7g0219331 25.622 402 257 17 29 400 119 508 2.22e-16 81.6
Msa1204010 MtrunA17_Chr2g0306321 23.229 353 232 16 64 397 78 410 3.20e-16 80.9
Msa1204010 MtrunA17_Chr4g0027071 26.271 354 225 12 64 399 69 404 6.35e-16 79.7
Msa1204010 MtrunA17_Chr3g0097841 27.230 213 142 5 231 432 20 230 7.34e-16 77.4
Msa1204010 MtrunA17_Chr7g0253531 23.077 403 257 14 64 423 55 447 1.09e-15 79.0
Msa1204010 MtrunA17_Chr7g0253501 24.462 372 239 13 64 402 55 417 1.34e-15 79.0
Msa1204010 MtrunA17_Chr3g0087901 25.602 457 292 19 4 428 8 448 1.85e-15 78.6
Msa1204010 MtrunA17_Chr5g0433641 22.529 435 297 13 32 443 24 441 1.87e-15 78.2
Msa1204010 MtrunA17_Chr2g0323501 26.455 378 218 17 64 399 73 432 2.49e-15 78.2
Msa1204010 MtrunA17_Chr2g0283361 24.119 369 249 12 40 399 40 386 3.22e-15 77.4
Msa1204010 MtrunA17_Chr2g0323511 23.111 450 280 17 29 431 37 467 6.30e-15 76.6
Msa1204010 MtrunA17_Chr1g0199561 26.222 450 260 24 39 449 32 448 9.03e-15 76.3
Msa1204010 MtrunA17_Chr8g0376911 23.034 356 239 11 59 402 54 386 1.00e-14 75.9
Msa1204010 MtrunA17_Chr7g0219881 26.335 281 163 9 147 397 147 413 1.02e-14 76.3
Msa1204010 MtrunA17_Chr7g0273731 22.197 437 295 15 32 443 107 523 4.65e-14 74.3
Msa1204010 MtrunA17_Chr3g0106661 24.746 295 210 7 58 344 64 354 9.22e-14 73.2
Msa1204010 MtrunA17_Chr7g0252731 26.354 277 167 10 64 322 70 327 1.11e-13 72.8
Msa1204010 MtrunA17_Chr7g0219301 23.844 411 253 16 29 400 26 415 3.02e-13 72.0
Msa1204010 MtrunA17_Chr5g0438681 23.184 358 237 14 62 408 57 387 6.93e-13 70.1
Msa1204010 MtrunA17_Chr7g0273791 24.149 323 209 11 32 332 24 332 7.47e-13 70.5
Msa1204010 MtrunA17_Chr3g0106741 24.913 289 202 7 64 344 45 326 1.01e-12 69.7
Msa1204010 MtrunA17_Chr2g0323421 24.297 391 254 17 64 424 111 489 1.35e-12 69.7
Msa1204010 MtrunA17_Chr7g0273781 21.542 441 293 14 32 443 57 473 1.50e-12 69.3
Msa1204010 MtrunA17_Chr7g0219241 24.057 424 250 16 49 428 60 455 2.72e-12 68.6
Msa1204010 MtrunA17_Chr8g0361771 24.722 449 276 18 23 443 18 432 3.13e-12 68.2
Msa1204010 MtrunA17_Chr1g0165711 24.679 312 199 12 32 323 23 318 3.51e-12 68.2
Msa1204010 MtrunA17_Chr7g0274021 24.752 404 264 18 61 443 60 444 5.35e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1204010 AT5G67150.1 40.889 450 251 7 1 443 1 442 6.74e-112 337
Msa1204010 AT3G50280.1 37.111 450 271 6 1 446 1 442 2.05e-101 310
Msa1204010 AT3G50300.1 38.731 457 262 8 1 448 1 448 1.18e-100 308
Msa1204010 AT3G50270.1 39.278 443 261 6 6 444 7 445 2.67e-99 305
Msa1204010 AT5G38130.1 38.479 434 251 7 1 429 21 443 9.99e-94 291
Msa1204010 AT5G67160.1 39.480 423 229 9 27 442 25 427 2.49e-93 289
Msa1204010 AT5G42830.1 35.514 428 257 8 27 443 26 445 9.14e-85 267
Msa1204010 AT2G39980.1 33.550 462 248 6 29 443 27 476 5.21e-82 261
Msa1204010 AT5G07850.1 37.182 433 250 9 31 449 31 455 1.86e-81 259
Msa1204010 AT5G07860.1 36.744 430 240 10 31 443 31 445 4.12e-80 255
Msa1204010 AT5G07870.1 35.586 444 250 9 31 449 31 463 8.77e-76 244
Msa1204010 AT3G50280.2 38.413 315 188 3 135 446 1 312 5.47e-75 238
Msa1204010 AT5G01210.1 33.624 458 254 7 24 443 20 465 8.46e-75 242
Msa1204010 AT5G23940.1 32.184 435 270 11 27 443 21 448 1.09e-61 208
Msa1204010 AT3G50290.1 40.299 268 153 4 132 394 4 269 1.39e-59 196
Msa1204010 AT5G48930.1 28.796 382 242 16 64 431 56 421 4.11e-27 113
Msa1204010 AT5G41040.2 27.614 373 245 11 61 424 66 422 3.35e-25 107
Msa1204010 AT5G41040.1 27.614 373 245 11 61 424 82 438 3.91e-25 107
Msa1204010 AT3G29590.1 25.408 429 301 9 23 438 20 442 3.43e-24 105
Msa1204010 AT3G48720.1 26.735 389 251 15 62 436 59 427 1.04e-23 103
Msa1204010 AT1G78990.1 27.596 366 225 12 51 397 52 396 2.00e-23 102
Msa1204010 AT2G40230.1 25.121 414 286 8 1 407 1 397 2.99e-23 102
Msa1204010 AT2G19070.1 24.694 409 259 14 59 436 53 443 7.82e-23 100
Msa1204010 AT1G28680.1 26.531 343 224 10 67 399 65 389 7.91e-22 98.2
Msa1204010 AT5G63560.1 26.121 379 239 13 64 428 61 412 6.26e-21 95.1
Msa1204010 AT1G28680.2 26.712 292 195 7 67 351 65 344 4.22e-20 92.4
Msa1204010 AT1G24430.1 26.216 370 230 15 62 420 60 397 1.38e-19 91.3
Msa1204010 AT3G03480.1 26.914 405 250 18 32 416 33 411 6.99e-19 89.4
Msa1204010 AT3G29670.1 25.877 456 284 20 3 428 2 433 1.70e-18 88.2
Msa1204010 AT5G39090.1 26.136 440 275 22 19 431 16 432 5.14e-18 86.7
Msa1204010 AT5G39080.1 22.826 460 301 16 14 436 11 453 1.96e-17 84.7
Msa1204010 AT5G57840.1 25.059 423 245 19 44 428 34 422 3.84e-17 84.0
Msa1204010 AT3G30280.1 25.282 443 270 21 32 443 20 432 4.44e-17 83.6
Msa1204010 AT3G26040.1 24.627 402 254 16 60 443 55 425 1.01e-16 82.4
Msa1204010 AT5G17540.1 24.552 391 259 14 32 405 23 394 2.47e-16 81.6
Msa1204010 AT5G07080.1 23.256 430 287 13 40 448 43 450 3.99e-16 80.9
Msa1204010 AT1G31490.1 24.685 397 261 16 61 442 59 432 9.33e-16 79.7
Msa1204010 AT1G24420.2 25.450 389 241 15 74 447 75 429 9.86e-16 79.3
Msa1204010 AT1G24420.1 25.450 389 241 15 74 447 75 429 9.86e-16 79.3
Msa1204010 AT5G39050.1 23.175 315 207 10 145 431 145 452 3.60e-15 77.8
Msa1204010 AT5G16410.1 23.229 353 232 10 62 397 89 419 3.64e-15 77.8
Msa1204010 AT2G23510.1 23.478 345 242 9 64 399 69 400 7.80e-15 76.6
Msa1204010 AT5G47950.1 24.651 430 272 17 32 443 20 415 1.53e-14 75.9
Msa1204010 AT3G29635.1 24.611 386 256 14 64 428 67 438 5.94e-14 73.9
Msa1204010 AT3G47170.1 23.490 298 206 8 57 335 58 352 7.66e-14 73.9
Msa1204010 AT1G03390.1 25.356 351 232 14 61 397 73 407 6.43e-13 70.9
Msa1204010 AT5G61160.1 25.000 272 178 10 145 397 139 403 1.40e-12 69.7
Msa1204010 AT5G23970.1 25.000 352 224 14 61 399 51 375 1.11e-11 67.0
Msa1204010 AT1G03495.1 26.990 289 180 12 59 323 61 342 1.49e-11 65.9

Find 105 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTTTCTTATGAGATTT+TGG 0.242506 8_1:-59473293 Msa1204010:CDS
TGTTCCACTTCCAAGTTCTA+TGG 0.245627 8_1:-59473235 Msa1204010:CDS
TTCCGAAATAATCCTCTTCT+AGG 0.269532 8_1:+59473656 None:intergenic
GGATTCTAAGCTTTCTTCTA+AGG 0.272080 8_1:+59473897 None:intergenic
GGGATTGGTAACAAGTATAA+TGG 0.290220 8_1:-59473367 Msa1204010:CDS
TTGGTATTGGAATGGGTTGT+TGG 0.293902 8_1:+59474418 None:intergenic
GTTTCTTATGTGTTGTTTAT+AGG 0.297168 8_1:-59473703 Msa1204010:CDS
GCAGGAGAGGTTCTAGAGTA+TGG 0.316001 8_1:-59473601 Msa1204010:CDS
GGGGAATGACACTGAGTTCA+TGG 0.325881 8_1:-59473263 Msa1204010:CDS
TTTGTTTAAGATGGTTTATA+TGG 0.335226 8_1:+59474394 None:intergenic
TTGCAGACGGCAAGTCGTTT+TGG 0.346102 8_1:-59474062 Msa1204010:CDS
GAAACATCTTCTTGTGGATC+AGG 0.367065 8_1:+59473721 None:intergenic
CCCCTAGAAGAGGATTATTT+CGG 0.368115 8_1:-59473658 Msa1204010:CDS
TGGTTTCAAGATGGAGGAAT+TGG 0.375248 8_1:+59474463 None:intergenic
TTGGAATTTCAATATCGTTT+GGG 0.375437 8_1:+59473962 None:intergenic
TATATGGTTTGGTATTGGAA+TGG 0.381013 8_1:+59474410 None:intergenic
AAAGATTCTTTCGGCTAACT+TGG 0.384070 8_1:+59473876 None:intergenic
TGGTTTATATGGTTTGGTAT+TGG 0.385182 8_1:+59474405 None:intergenic
AAGCGCTATTATCTCACGTT+TGG 0.385318 8_1:-59473768 Msa1204010:CDS
TGTGAAATGAAAGATTCTTT+CGG 0.395295 8_1:+59473867 None:intergenic
TTAAGATGGTTTATATGGTT+TGG 0.398195 8_1:+59474399 None:intergenic
ATTGGAATTTCAATATCGTT+TGG 0.400486 8_1:+59473961 None:intergenic
AGCTTTCTTCTAAGGAGCCT+TGG 0.410094 8_1:+59473905 None:intergenic
TTTGGCATTTCGTTAATTCA+TGG 0.411811 8_1:-59474044 Msa1204010:CDS
TTGTGATTGTTGTTGTCAAT+TGG 0.414221 8_1:+59474528 None:intergenic
AGGAAAGTGTTTGTTTAAGA+TGG 0.419599 8_1:+59474385 None:intergenic
TTGGTTGTGACACAGCTTCA+TGG 0.433925 8_1:+59474151 None:intergenic
TTAAGTGACGGCGTCTTCAT+TGG 0.436912 8_1:-59474105 Msa1204010:CDS
TAAGTAATCATTACGAGTCT+TGG 0.438622 8_1:-59473519 Msa1204010:CDS
ATATGGTTTGGTATTGGAAT+GGG 0.445755 8_1:+59474411 None:intergenic
TCAAAAGCAAACGCCGAAGC+TGG 0.446381 8_1:-59473820 Msa1204010:CDS
GAGGTGTATAGTTTGATTGA+AGG 0.450138 8_1:+59474214 None:intergenic
ACTGGTGGAGATCACTTTGA+TGG 0.452170 8_1:+59474563 None:intergenic
AACTTCTTTCCACCCCTCGC+TGG 0.454179 8_1:-59474354 Msa1204010:CDS
TCCGAAATAATCCTCTTCTA+GGG 0.454875 8_1:+59473657 None:intergenic
TGGAATCGGAAAAGTTGCTT+TGG 0.455281 8_1:-59473581 Msa1204010:CDS
TTTGTGAAAGGGAAGTGTAT+TGG 0.457281 8_1:+59473943 None:intergenic
GGATTGGTAACAAGTATAAT+GGG 0.461227 8_1:-59473366 Msa1204010:CDS
GCATCATTTCCCATAGAACT+TGG 0.464131 8_1:+59473225 None:intergenic
GGGAAAATTACAGTGTTTGC+TGG 0.464637 8_1:-59473346 Msa1204010:CDS
CTACCACTTGGAAACAACTT+TGG 0.465383 8_1:+59473487 None:intergenic
GGGAACCAACGTTGAAATGA+AGG 0.474068 8_1:+59473982 None:intergenic
AATTGGTGCTTGAATTGTAC+TGG 0.484057 8_1:+59474545 None:intergenic
GAAAAGAAGGCCTGCTTGGA+TGG 0.486070 8_1:+59474443 None:intergenic
ATCCCACTTCGAACTGCCAC+AGG 0.501391 8_1:+59473385 None:intergenic
TGGGTTGTTGGTGGAAAAGA+AGG 0.501427 8_1:+59474430 None:intergenic
TCATGGTCACAAATCTCAAA+AGG 0.504161 8_1:-59474027 Msa1204010:CDS
GTTCCACTTCCAAGTTCTAT+GGG 0.509409 8_1:-59473234 Msa1204010:CDS
GTGGCAGTTCGAAGTGGGAT+TGG 0.513271 8_1:-59473382 Msa1204010:CDS
GGGTGGAAAGAAGTTGAGAG+TGG 0.516551 8_1:+59474362 None:intergenic
GTATTGGAATGGGTTGTTGG+TGG 0.516749 8_1:+59474421 None:intergenic
CCACTTGGAGGACTACCACT+TGG 0.530738 8_1:+59473475 None:intergenic
TTTCCCATAGAACTTGGAAG+TGG 0.534045 8_1:+59473231 None:intergenic
GAGGTTCTAGAGTATGGAAT+CGG 0.537759 8_1:-59473595 Msa1204010:CDS
TAGCAATCACTTGTTGTCCA+AGG 0.538515 8_1:-59473444 Msa1204010:CDS
TCTATCATTTGCAACAACCT+TGG 0.544576 8_1:-59474285 Msa1204010:CDS
CTGCTTGGATGGTTTCAAGA+TGG 0.545156 8_1:+59474454 None:intergenic
AACTCCCTTCATTTCAACGT+TGG 0.545872 8_1:-59473987 Msa1204010:CDS
GAAAATTGAATTAACACCAT+GGG 0.549693 8_1:-59474490 Msa1204010:CDS
GGTGGAAAAGAAGGCCTGCT+TGG 0.549803 8_1:+59474439 None:intergenic
CGTCACTTAACTCCGTTACC+TGG 0.550388 8_1:+59474118 None:intergenic
GCTAACGAATTACCACTTGG+AGG 0.558087 8_1:+59473463 None:intergenic
CATCTTGAAACCATCCAAGC+AGG 0.563003 8_1:-59474453 Msa1204010:CDS
ACAACCAACTCTAGGAGTCC+AGG 0.567424 8_1:-59474136 Msa1204010:CDS
TCTAGGGGCGGAATCAACCT+TGG 0.569302 8_1:+59473673 None:intergenic
TGCAACCACGTTGTTGCAGA+CGG 0.570748 8_1:-59474075 Msa1204010:CDS
GTGTTTGCTGGTGCTGAAGA+AGG 0.574224 8_1:-59473334 Msa1204010:CDS
GGAACCAACGTTGAAATGAA+GGG 0.576282 8_1:+59473983 None:intergenic
GTTGATTCCGCCCCTAGAAG+AGG 0.580936 8_1:-59473668 Msa1204010:CDS
AGCCTGTGGCAGTTCGAAGT+GGG 0.585379 8_1:-59473387 Msa1204010:CDS
GCTGTGTCACAACCAACTCT+AGG 0.587882 8_1:-59474144 Msa1204010:CDS
CTTGGATGGTTTCAAGATGG+AGG 0.589594 8_1:+59474457 None:intergenic
TAGAACTTGGAAGTGGAACA+TGG 0.589628 8_1:+59473238 None:intergenic
TGGAAAGAAGTTGAGAGTGG+AGG 0.590316 8_1:+59474365 None:intergenic
ACATAAGAAACATCTTCTTG+TGG 0.596961 8_1:+59473715 None:intergenic
CCGAAATAATCCTCTTCTAG+GGG 0.597381 8_1:+59473658 None:intergenic
AGTGCAAAATACAACGGTCG+TGG 0.601343 8_1:-59474241 Msa1204010:CDS
TGGAGGAATTGGAGATCCCA+TGG 0.604811 8_1:+59474474 None:intergenic
AACTCTAGGAGTCCAGGTAA+CGG 0.604904 8_1:-59474130 Msa1204010:CDS
AAGAATCTTTCATTTCACAA+AGG 0.609560 8_1:-59473863 Msa1204010:CDS
GTTACCTGGACTCCTAGAGT+TGG 0.609941 8_1:+59474132 None:intergenic
AGAAAATTGAATTAACACCA+TGG 0.610904 8_1:-59474491 Msa1204010:CDS
TGTTTATAGGTGTTAGACCA+AGG 0.611467 8_1:-59473690 Msa1204010:CDS
ACACCAAAGTTGTTTCCAAG+TGG 0.613202 8_1:-59473490 Msa1204010:CDS
ACAAGACGACCAGCGAGGGG+TGG 0.619470 8_1:+59474345 None:intergenic
AAGCCTGTGGCAGTTCGAAG+TGG 0.622477 8_1:-59473388 Msa1204010:CDS
ACTGTTGTGAGGATGAAAGC+AGG 0.624888 8_1:-59473619 Msa1204010:CDS
TATTACAAGACGACCAGCGA+GGG 0.630336 8_1:+59474341 None:intergenic
AAATAATCCTCTTCTAGGGG+CGG 0.632202 8_1:+59473661 None:intergenic
GGATTATTTCGGAAACGCAG+TGG 0.636378 8_1:-59473647 Msa1204010:CDS
TTATTTCGGAAACGCAGTGG+TGG 0.651714 8_1:-59473644 Msa1204010:CDS
ATTGCTAACGAATTACCACT+TGG 0.655593 8_1:+59473460 None:intergenic
TGGTGCTTGAATTGTACTGG+TGG 0.661054 8_1:+59474548 None:intergenic
TGTGAGGATGAAAGCAGGAG+AGG 0.662636 8_1:-59473614 Msa1204010:CDS
AAAACAGAATCACAAAACCA+AGG 0.668777 8_1:-59473922 Msa1204010:CDS
ATTACAAGACGACCAGCGAG+GGG 0.669009 8_1:+59474342 None:intergenic
CAGGTAACGGAGTTAAGTGA+CGG 0.674400 8_1:-59474117 Msa1204010:CDS
GTTGCAAATGATAGAACATG+TGG 0.682016 8_1:+59474293 None:intergenic
TTTCACAAAGGAGAAAATCG+CGG 0.682651 8_1:-59473851 Msa1204010:CDS
CAGTGGTGGTTACTGTTGTG+AGG 0.691041 8_1:-59473630 Msa1204010:CDS
CCAAGTGGTAGTCCTCCAAG+TGG 0.727113 8_1:-59473475 Msa1204010:CDS
TGCCACAGTGCAAAATACAA+CGG 0.729193 8_1:-59474247 Msa1204010:CDS
ACTTGCCGTCTGCAACAACG+TGG 0.730274 8_1:+59474070 None:intergenic
CATGGACGAATAGTGCACCA+AGG 0.738412 8_1:+59474268 None:intergenic
TTATTACAAGACGACCAGCG+AGG 0.755763 8_1:+59474340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTAAGATGGTTTATA+TGG + chr8_1:59473407-59473426 None:intergenic 20.0%
!!! TTTGTTTAAGATGGTTTATA+TGG + chr8_1:59473407-59473426 None:intergenic 20.0%
! AGAAAATTGAATTAACACCA+TGG - chr8_1:59473307-59473326 Msa1204010:CDS 25.0%
! GAAAATTGAATTAACACCAT+GGG - chr8_1:59473308-59473327 Msa1204010:CDS 25.0%
! TTAAGATGGTTTATATGGTT+TGG + chr8_1:59473402-59473421 None:intergenic 25.0%
! TTGGAATTTCAATATCGTTT+GGG + chr8_1:59473839-59473858 None:intergenic 25.0%
! ATTGGAATTTCAATATCGTT+TGG + chr8_1:59473840-59473859 None:intergenic 25.0%
! TGTGAAATGAAAGATTCTTT+CGG + chr8_1:59473934-59473953 None:intergenic 25.0%
! AAGAATCTTTCATTTCACAA+AGG - chr8_1:59473935-59473954 Msa1204010:CDS 25.0%
!!! GTTTCTTATGTGTTGTTTAT+AGG - chr8_1:59474095-59474114 Msa1204010:CDS 25.0%
!! TTGTCTTTCTTATGAGATTT+TGG - chr8_1:59474505-59474524 Msa1204010:CDS 25.0%
! AGAAAATTGAATTAACACCA+TGG - chr8_1:59473307-59473326 Msa1204010:CDS 25.0%
! GAAAATTGAATTAACACCAT+GGG - chr8_1:59473308-59473327 Msa1204010:CDS 25.0%
! TTAAGATGGTTTATATGGTT+TGG + chr8_1:59473402-59473421 None:intergenic 25.0%
! TTGGAATTTCAATATCGTTT+GGG + chr8_1:59473839-59473858 None:intergenic 25.0%
! ATTGGAATTTCAATATCGTT+TGG + chr8_1:59473840-59473859 None:intergenic 25.0%
! TGTGAAATGAAAGATTCTTT+CGG + chr8_1:59473934-59473953 None:intergenic 25.0%
! AAGAATCTTTCATTTCACAA+AGG - chr8_1:59473935-59473954 Msa1204010:CDS 25.0%
!!! GTTTCTTATGTGTTGTTTAT+AGG - chr8_1:59474095-59474114 Msa1204010:CDS 25.0%
!! TTGTCTTTCTTATGAGATTT+TGG - chr8_1:59474505-59474524 Msa1204010:CDS 25.0%
! TTGTGATTGTTGTTGTCAAT+TGG + chr8_1:59473273-59473292 None:intergenic 30.0%
!! ATATGGTTTGGTATTGGAAT+GGG + chr8_1:59473390-59473409 None:intergenic 30.0%
!! TATATGGTTTGGTATTGGAA+TGG + chr8_1:59473391-59473410 None:intergenic 30.0%
!! TGGTTTATATGGTTTGGTAT+TGG + chr8_1:59473396-59473415 None:intergenic 30.0%
!! AGGAAAGTGTTTGTTTAAGA+TGG + chr8_1:59473416-59473435 None:intergenic 30.0%
TTTGGCATTTCGTTAATTCA+TGG - chr8_1:59473754-59473773 Msa1204010:CDS 30.0%
!! AGGGAGTTTTGATATTTTGT+GGG + chr8_1:59473799-59473818 None:intergenic 30.0%
!! AAGGGAGTTTTGATATTTTG+TGG + chr8_1:59473800-59473819 None:intergenic 30.0%
!!! GTGATTCTGTTTTTGTGAAA+GGG + chr8_1:59473869-59473888 None:intergenic 30.0%
!!! TGTGATTCTGTTTTTGTGAA+AGG + chr8_1:59473870-59473889 None:intergenic 30.0%
AAAACAGAATCACAAAACCA+AGG - chr8_1:59473876-59473895 Msa1204010:CDS 30.0%
ACATAAGAAACATCTTCTTG+TGG + chr8_1:59474086-59474105 None:intergenic 30.0%
TAAGTAATCATTACGAGTCT+TGG - chr8_1:59474279-59474298 Msa1204010:CDS 30.0%
!!! GATGTTTTTGGGAATGATTT+TGG - chr8_1:59474380-59474399 Msa1204010:CDS 30.0%
!! TTTTTGGGAATGATTTTGGT+TGG - chr8_1:59474384-59474403 Msa1204010:CDS 30.0%
!!! TTTTGGGAATGATTTTGGTT+GGG - chr8_1:59474385-59474404 Msa1204010:CDS 30.0%
! GGATTGGTAACAAGTATAAT+GGG - chr8_1:59474432-59474451 Msa1204010:CDS 30.0%
! TCTTTCTTATGAGATTTTGG+AGG - chr8_1:59474508-59474527 Msa1204010:CDS 30.0%
! TTGTGATTGTTGTTGTCAAT+TGG + chr8_1:59473273-59473292 None:intergenic 30.0%
!! ATATGGTTTGGTATTGGAAT+GGG + chr8_1:59473390-59473409 None:intergenic 30.0%
!! TATATGGTTTGGTATTGGAA+TGG + chr8_1:59473391-59473410 None:intergenic 30.0%
!! TGGTTTATATGGTTTGGTAT+TGG + chr8_1:59473396-59473415 None:intergenic 30.0%
!! AGGAAAGTGTTTGTTTAAGA+TGG + chr8_1:59473416-59473435 None:intergenic 30.0%
TTTGGCATTTCGTTAATTCA+TGG - chr8_1:59473754-59473773 Msa1204010:CDS 30.0%
!! AGGGAGTTTTGATATTTTGT+GGG + chr8_1:59473799-59473818 None:intergenic 30.0%
!! AAGGGAGTTTTGATATTTTG+TGG + chr8_1:59473800-59473819 None:intergenic 30.0%
!!! GTGATTCTGTTTTTGTGAAA+GGG + chr8_1:59473869-59473888 None:intergenic 30.0%
!!! TGTGATTCTGTTTTTGTGAA+AGG + chr8_1:59473870-59473889 None:intergenic 30.0%
AAAACAGAATCACAAAACCA+AGG - chr8_1:59473876-59473895 Msa1204010:CDS 30.0%
ACATAAGAAACATCTTCTTG+TGG + chr8_1:59474086-59474105 None:intergenic 30.0%
TAAGTAATCATTACGAGTCT+TGG - chr8_1:59474279-59474298 Msa1204010:CDS 30.0%
!!! GATGTTTTTGGGAATGATTT+TGG - chr8_1:59474380-59474399 Msa1204010:CDS 30.0%
!! TTTTTGGGAATGATTTTGGT+TGG - chr8_1:59474384-59474403 Msa1204010:CDS 30.0%
!!! TTTTGGGAATGATTTTGGTT+GGG - chr8_1:59474385-59474404 Msa1204010:CDS 30.0%
! GGATTGGTAACAAGTATAAT+GGG - chr8_1:59474432-59474451 Msa1204010:CDS 30.0%
! TCTTTCTTATGAGATTTTGG+AGG - chr8_1:59474508-59474527 Msa1204010:CDS 30.0%
! AATTGGTGCTTGAATTGTAC+TGG + chr8_1:59473256-59473275 None:intergenic 35.0%
GTTGCAAATGATAGAACATG+TGG + chr8_1:59473508-59473527 None:intergenic 35.0%
TCTATCATTTGCAACAACCT+TGG - chr8_1:59473513-59473532 Msa1204010:CDS 35.0%
GAGGTGTATAGTTTGATTGA+AGG + chr8_1:59473587-59473606 None:intergenic 35.0%
AAAAATGAGTGGACAATTGG+AGG + chr8_1:59473606-59473625 None:intergenic 35.0%
GGAAAAAATGAGTGGACAAT+TGG + chr8_1:59473609-59473628 None:intergenic 35.0%
GGTTAAGTGGAAAAAATGAG+TGG + chr8_1:59473617-59473636 None:intergenic 35.0%
TCATGGTCACAAATCTCAAA+AGG - chr8_1:59473771-59473790 Msa1204010:CDS 35.0%
! TTTGTGAAAGGGAAGTGTAT+TGG + chr8_1:59473858-59473877 None:intergenic 35.0%
GGATTCTAAGCTTTCTTCTA+AGG + chr8_1:59473904-59473923 None:intergenic 35.0%
AAAGATTCTTTCGGCTAACT+TGG + chr8_1:59473925-59473944 None:intergenic 35.0%
TTTCACAAAGGAGAAAATCG+CGG - chr8_1:59473947-59473966 Msa1204010:CDS 35.0%
!!! AGGTTTTTTGCAACGAACAA+CGG + chr8_1:59474060-59474079 None:intergenic 35.0%
TGTTTATAGGTGTTAGACCA+AGG - chr8_1:59474108-59474127 Msa1204010:CDS 35.0%
TCCGAAATAATCCTCTTCTA+GGG + chr8_1:59474144-59474163 None:intergenic 35.0%
TTCCGAAATAATCCTCTTCT+AGG + chr8_1:59474145-59474164 None:intergenic 35.0%
ATTGCTAACGAATTACCACT+TGG + chr8_1:59474341-59474360 None:intergenic 35.0%
! TGTCCAAGGTTTGATGTTTT+TGG - chr8_1:59474368-59474387 Msa1204010:CDS 35.0%
! GTCCAAGGTTTGATGTTTTT+GGG - chr8_1:59474369-59474388 Msa1204010:CDS 35.0%
TTCCCAAAAACATCAAACCT+TGG + chr8_1:59474374-59474393 None:intergenic 35.0%
!!! TTTGGGAATGATTTTGGTTG+GGG - chr8_1:59474386-59474405 Msa1204010:CDS 35.0%
! GGGATTGGTAACAAGTATAA+TGG - chr8_1:59474431-59474450 Msa1204010:CDS 35.0%
!! TTATGAGATTTTGGAGGCTT+TGG - chr8_1:59474514-59474533 Msa1204010:CDS 35.0%
!! TATGAGATTTTGGAGGCTTT+GGG - chr8_1:59474515-59474534 Msa1204010:CDS 35.0%
! AATTGGTGCTTGAATTGTAC+TGG + chr8_1:59473256-59473275 None:intergenic 35.0%
GTTGCAAATGATAGAACATG+TGG + chr8_1:59473508-59473527 None:intergenic 35.0%
TCTATCATTTGCAACAACCT+TGG - chr8_1:59473513-59473532 Msa1204010:CDS 35.0%
GAGGTGTATAGTTTGATTGA+AGG + chr8_1:59473587-59473606 None:intergenic 35.0%
AAAAATGAGTGGACAATTGG+AGG + chr8_1:59473606-59473625 None:intergenic 35.0%
GGAAAAAATGAGTGGACAAT+TGG + chr8_1:59473609-59473628 None:intergenic 35.0%
GGTTAAGTGGAAAAAATGAG+TGG + chr8_1:59473617-59473636 None:intergenic 35.0%
TCATGGTCACAAATCTCAAA+AGG - chr8_1:59473771-59473790 Msa1204010:CDS 35.0%
! TTTGTGAAAGGGAAGTGTAT+TGG + chr8_1:59473858-59473877 None:intergenic 35.0%
GGATTCTAAGCTTTCTTCTA+AGG + chr8_1:59473904-59473923 None:intergenic 35.0%
AAAGATTCTTTCGGCTAACT+TGG + chr8_1:59473925-59473944 None:intergenic 35.0%
TTTCACAAAGGAGAAAATCG+CGG - chr8_1:59473947-59473966 Msa1204010:CDS 35.0%
!!! AGGTTTTTTGCAACGAACAA+CGG + chr8_1:59474060-59474079 None:intergenic 35.0%
TGTTTATAGGTGTTAGACCA+AGG - chr8_1:59474108-59474127 Msa1204010:CDS 35.0%
TCCGAAATAATCCTCTTCTA+GGG + chr8_1:59474144-59474163 None:intergenic 35.0%
TTCCGAAATAATCCTCTTCT+AGG + chr8_1:59474145-59474164 None:intergenic 35.0%
ATTGCTAACGAATTACCACT+TGG + chr8_1:59474341-59474360 None:intergenic 35.0%
! TGTCCAAGGTTTGATGTTTT+TGG - chr8_1:59474368-59474387 Msa1204010:CDS 35.0%
! GTCCAAGGTTTGATGTTTTT+GGG - chr8_1:59474369-59474388 Msa1204010:CDS 35.0%
TTCCCAAAAACATCAAACCT+TGG + chr8_1:59474374-59474393 None:intergenic 35.0%
!!! TTTGGGAATGATTTTGGTTG+GGG - chr8_1:59474386-59474405 Msa1204010:CDS 35.0%
! GGGATTGGTAACAAGTATAA+TGG - chr8_1:59474431-59474450 Msa1204010:CDS 35.0%
!! TTATGAGATTTTGGAGGCTT+TGG - chr8_1:59474514-59474533 Msa1204010:CDS 35.0%
!! TATGAGATTTTGGAGGCTTT+GGG - chr8_1:59474515-59474534 Msa1204010:CDS 35.0%
TGGTTTCAAGATGGAGGAAT+TGG + chr8_1:59473338-59473357 None:intergenic 40.0%
!! TTGGTATTGGAATGGGTTGT+TGG + chr8_1:59473383-59473402 None:intergenic 40.0%
! TTGTATTTTGCACTGTGGCA+TGG + chr8_1:59473551-59473570 None:intergenic 40.0%
TGCCACAGTGCAAAATACAA+CGG - chr8_1:59473551-59473570 Msa1204010:CDS 40.0%
! TGGTTTTTAACGCGGTTAAG+TGG + chr8_1:59473630-59473649 None:intergenic 40.0%
! CAGCTTCATGGTTTTTAACG+CGG + chr8_1:59473638-59473657 None:intergenic 40.0%
AACTCCCTTCATTTCAACGT+TGG - chr8_1:59473811-59473830 Msa1204010:CDS 40.0%
GGAACCAACGTTGAAATGAA+GGG + chr8_1:59473818-59473837 None:intergenic 40.0%
! AGTTTTCTCTGTTCCAGCTT+CGG + chr8_1:59473994-59474013 None:intergenic 40.0%
AAGCGCTATTATCTCACGTT+TGG - chr8_1:59474030-59474049 Msa1204010:CDS 40.0%
GAAACATCTTCTTGTGGATC+AGG + chr8_1:59474080-59474099 None:intergenic 40.0%
! AAATAATCCTCTTCTAGGGG+CGG + chr8_1:59474140-59474159 None:intergenic 40.0%
CCGAAATAATCCTCTTCTAG+GGG + chr8_1:59474143-59474162 None:intergenic 40.0%
CCCCTAGAAGAGGATTATTT+CGG - chr8_1:59474140-59474159 Msa1204010:CDS 40.0%
!! GAGGTTCTAGAGTATGGAAT+CGG - chr8_1:59474203-59474222 Msa1204010:CDS 40.0%
TGGAATCGGAAAAGTTGCTT+TGG - chr8_1:59474217-59474236 Msa1204010:CDS 40.0%
! ACACCAAAGTTGTTTCCAAG+TGG - chr8_1:59474308-59474327 Msa1204010:CDS 40.0%
CTACCACTTGGAAACAACTT+TGG + chr8_1:59474314-59474333 None:intergenic 40.0%
!! TAGCAATCACTTGTTGTCCA+AGG - chr8_1:59474354-59474373 Msa1204010:CDS 40.0%
GGGAAAATTACAGTGTTTGC+TGG - chr8_1:59474452-59474471 Msa1204010:CDS 40.0%
!! ATGAGATTTTGGAGGCTTTG+GGG - chr8_1:59474516-59474535 Msa1204010:CDS 40.0%
TAGAACTTGGAAGTGGAACA+TGG + chr8_1:59474563-59474582 None:intergenic 40.0%
TGTTCCACTTCCAAGTTCTA+TGG - chr8_1:59474563-59474582 Msa1204010:CDS 40.0%
GTTCCACTTCCAAGTTCTAT+GGG - chr8_1:59474564-59474583 Msa1204010:CDS 40.0%
TTTCCCATAGAACTTGGAAG+TGG + chr8_1:59474570-59474589 None:intergenic 40.0%
TGGTTTCAAGATGGAGGAAT+TGG + chr8_1:59473338-59473357 None:intergenic 40.0%
!! TTGGTATTGGAATGGGTTGT+TGG + chr8_1:59473383-59473402 None:intergenic 40.0%
! TTGTATTTTGCACTGTGGCA+TGG + chr8_1:59473551-59473570 None:intergenic 40.0%
TGCCACAGTGCAAAATACAA+CGG - chr8_1:59473551-59473570 Msa1204010:CDS 40.0%
! TGGTTTTTAACGCGGTTAAG+TGG + chr8_1:59473630-59473649 None:intergenic 40.0%
! CAGCTTCATGGTTTTTAACG+CGG + chr8_1:59473638-59473657 None:intergenic 40.0%
AACTCCCTTCATTTCAACGT+TGG - chr8_1:59473811-59473830 Msa1204010:CDS 40.0%
GGAACCAACGTTGAAATGAA+GGG + chr8_1:59473818-59473837 None:intergenic 40.0%
! AGTTTTCTCTGTTCCAGCTT+CGG + chr8_1:59473994-59474013 None:intergenic 40.0%
AAGCGCTATTATCTCACGTT+TGG - chr8_1:59474030-59474049 Msa1204010:CDS 40.0%
GAAACATCTTCTTGTGGATC+AGG + chr8_1:59474080-59474099 None:intergenic 40.0%
! AAATAATCCTCTTCTAGGGG+CGG + chr8_1:59474140-59474159 None:intergenic 40.0%
CCGAAATAATCCTCTTCTAG+GGG + chr8_1:59474143-59474162 None:intergenic 40.0%
CCCCTAGAAGAGGATTATTT+CGG - chr8_1:59474140-59474159 Msa1204010:CDS 40.0%
!! GAGGTTCTAGAGTATGGAAT+CGG - chr8_1:59474203-59474222 Msa1204010:CDS 40.0%
TGGAATCGGAAAAGTTGCTT+TGG - chr8_1:59474217-59474236 Msa1204010:CDS 40.0%
! ACACCAAAGTTGTTTCCAAG+TGG - chr8_1:59474308-59474327 Msa1204010:CDS 40.0%
CTACCACTTGGAAACAACTT+TGG + chr8_1:59474314-59474333 None:intergenic 40.0%
!! TAGCAATCACTTGTTGTCCA+AGG - chr8_1:59474354-59474373 Msa1204010:CDS 40.0%
GGGAAAATTACAGTGTTTGC+TGG - chr8_1:59474452-59474471 Msa1204010:CDS 40.0%
!! ATGAGATTTTGGAGGCTTTG+GGG - chr8_1:59474516-59474535 Msa1204010:CDS 40.0%
TAGAACTTGGAAGTGGAACA+TGG + chr8_1:59474563-59474582 None:intergenic 40.0%
TGTTCCACTTCCAAGTTCTA+TGG - chr8_1:59474563-59474582 Msa1204010:CDS 40.0%
GTTCCACTTCCAAGTTCTAT+GGG - chr8_1:59474564-59474583 Msa1204010:CDS 40.0%
TTTCCCATAGAACTTGGAAG+TGG + chr8_1:59474570-59474589 None:intergenic 40.0%
ACTGGTGGAGATCACTTTGA+TGG + chr8_1:59473238-59473257 None:intergenic 45.0%
TGGTGCTTGAATTGTACTGG+TGG + chr8_1:59473253-59473272 None:intergenic 45.0%
CTTGGATGGTTTCAAGATGG+AGG + chr8_1:59473344-59473363 None:intergenic 45.0%
CTGCTTGGATGGTTTCAAGA+TGG + chr8_1:59473347-59473366 None:intergenic 45.0%
CATCTTGAAACCATCCAAGC+AGG - chr8_1:59473345-59473364 Msa1204010:CDS 45.0%
! TGGGTTGTTGGTGGAAAAGA+AGG + chr8_1:59473371-59473390 None:intergenic 45.0%
!! GTATTGGAATGGGTTGTTGG+TGG + chr8_1:59473380-59473399 None:intergenic 45.0%
TGGAAAGAAGTTGAGAGTGG+AGG + chr8_1:59473436-59473455 None:intergenic 45.0%
TATTACAAGACGACCAGCGA+GGG + chr8_1:59473460-59473479 None:intergenic 45.0%
TTATTACAAGACGACCAGCG+AGG + chr8_1:59473461-59473480 None:intergenic 45.0%
! GACCGTTGTATTTTGCACTG+TGG + chr8_1:59473556-59473575 None:intergenic 45.0%
AGTGCAAAATACAACGGTCG+TGG - chr8_1:59473557-59473576 Msa1204010:CDS 45.0%
TTGGTTGTGACACAGCTTCA+TGG + chr8_1:59473650-59473669 None:intergenic 45.0%
! AACTCTAGGAGTCCAGGTAA+CGG - chr8_1:59473668-59473687 Msa1204010:CDS 45.0%
!! CAGGTAACGGAGTTAAGTGA+CGG - chr8_1:59473681-59473700 Msa1204010:CDS 45.0%
TTAAGTGACGGCGTCTTCAT+TGG - chr8_1:59473693-59473712 Msa1204010:CDS 45.0%
GGGAACCAACGTTGAAATGA+AGG + chr8_1:59473819-59473838 None:intergenic 45.0%
! AGCTTTCTTCTAAGGAGCCT+TGG + chr8_1:59473896-59473915 None:intergenic 45.0%
GGATTATTTCGGAAACGCAG+TGG - chr8_1:59474151-59474170 Msa1204010:CDS 45.0%
TTATTTCGGAAACGCAGTGG+TGG - chr8_1:59474154-59474173 Msa1204010:CDS 45.0%
ACTGTTGTGAGGATGAAAGC+AGG - chr8_1:59474179-59474198 Msa1204010:CDS 45.0%
GCTAACGAATTACCACTTGG+AGG + chr8_1:59474338-59474357 None:intergenic 45.0%
ACTGGTGGAGATCACTTTGA+TGG + chr8_1:59473238-59473257 None:intergenic 45.0%
TGGTGCTTGAATTGTACTGG+TGG + chr8_1:59473253-59473272 None:intergenic 45.0%
CTTGGATGGTTTCAAGATGG+AGG + chr8_1:59473344-59473363 None:intergenic 45.0%
CTGCTTGGATGGTTTCAAGA+TGG + chr8_1:59473347-59473366 None:intergenic 45.0%
CATCTTGAAACCATCCAAGC+AGG - chr8_1:59473345-59473364 Msa1204010:CDS 45.0%
! TGGGTTGTTGGTGGAAAAGA+AGG + chr8_1:59473371-59473390 None:intergenic 45.0%
!! GTATTGGAATGGGTTGTTGG+TGG + chr8_1:59473380-59473399 None:intergenic 45.0%
TGGAAAGAAGTTGAGAGTGG+AGG + chr8_1:59473436-59473455 None:intergenic 45.0%
TATTACAAGACGACCAGCGA+GGG + chr8_1:59473460-59473479 None:intergenic 45.0%
TTATTACAAGACGACCAGCG+AGG + chr8_1:59473461-59473480 None:intergenic 45.0%
! GACCGTTGTATTTTGCACTG+TGG + chr8_1:59473556-59473575 None:intergenic 45.0%
AGTGCAAAATACAACGGTCG+TGG - chr8_1:59473557-59473576 Msa1204010:CDS 45.0%
TTGGTTGTGACACAGCTTCA+TGG + chr8_1:59473650-59473669 None:intergenic 45.0%
! AACTCTAGGAGTCCAGGTAA+CGG - chr8_1:59473668-59473687 Msa1204010:CDS 45.0%
!! CAGGTAACGGAGTTAAGTGA+CGG - chr8_1:59473681-59473700 Msa1204010:CDS 45.0%
TTAAGTGACGGCGTCTTCAT+TGG - chr8_1:59473693-59473712 Msa1204010:CDS 45.0%
GGGAACCAACGTTGAAATGA+AGG + chr8_1:59473819-59473838 None:intergenic 45.0%
! AGCTTTCTTCTAAGGAGCCT+TGG + chr8_1:59473896-59473915 None:intergenic 45.0%
GGATTATTTCGGAAACGCAG+TGG - chr8_1:59474151-59474170 Msa1204010:CDS 45.0%
TTATTTCGGAAACGCAGTGG+TGG - chr8_1:59474154-59474173 Msa1204010:CDS 45.0%
ACTGTTGTGAGGATGAAAGC+AGG - chr8_1:59474179-59474198 Msa1204010:CDS 45.0%
GCTAACGAATTACCACTTGG+AGG + chr8_1:59474338-59474357 None:intergenic 45.0%
TGGAGGAATTGGAGATCCCA+TGG + chr8_1:59473327-59473346 None:intergenic 50.0%
GAAAAGAAGGCCTGCTTGGA+TGG + chr8_1:59473358-59473377 None:intergenic 50.0%
GGGTGGAAAGAAGTTGAGAG+TGG + chr8_1:59473439-59473458 None:intergenic 50.0%
ATTACAAGACGACCAGCGAG+GGG + chr8_1:59473459-59473478 None:intergenic 50.0%
CATGGACGAATAGTGCACCA+AGG + chr8_1:59473533-59473552 None:intergenic 50.0%
GCTGTGTCACAACCAACTCT+AGG - chr8_1:59473654-59473673 Msa1204010:CDS 50.0%
! ACAACCAACTCTAGGAGTCC+AGG - chr8_1:59473662-59473681 Msa1204010:CDS 50.0%
GTTACCTGGACTCCTAGAGT+TGG + chr8_1:59473669-59473688 None:intergenic 50.0%
CGTCACTTAACTCCGTTACC+TGG + chr8_1:59473683-59473702 None:intergenic 50.0%
TGCAACCACGTTGTTGCAGA+CGG - chr8_1:59473723-59473742 Msa1204010:CDS 50.0%
! TTGCAGACGGCAAGTCGTTT+TGG - chr8_1:59473736-59473755 Msa1204010:CDS 50.0%
TCAAAAGCAAACGCCGAAGC+TGG - chr8_1:59473978-59473997 Msa1204010:CDS 50.0%
CAGTGGTGGTTACTGTTGTG+AGG - chr8_1:59474168-59474187 Msa1204010:CDS 50.0%
TGTGAGGATGAAAGCAGGAG+AGG - chr8_1:59474184-59474203 Msa1204010:CDS 50.0%
!! GCAGGAGAGGTTCTAGAGTA+TGG - chr8_1:59474197-59474216 Msa1204010:CDS 50.0%
!! TTTTGGTTGGGGAAAGCCTG+TGG - chr8_1:59474397-59474416 Msa1204010:CDS 50.0%
! GTGTTTGCTGGTGCTGAAGA+AGG - chr8_1:59474464-59474483 Msa1204010:CDS 50.0%
GGGGAATGACACTGAGTTCA+TGG - chr8_1:59474535-59474554 Msa1204010:CDS 50.0%
TGGAGGAATTGGAGATCCCA+TGG + chr8_1:59473327-59473346 None:intergenic 50.0%
GAAAAGAAGGCCTGCTTGGA+TGG + chr8_1:59473358-59473377 None:intergenic 50.0%
GGGTGGAAAGAAGTTGAGAG+TGG + chr8_1:59473439-59473458 None:intergenic 50.0%
ATTACAAGACGACCAGCGAG+GGG + chr8_1:59473459-59473478 None:intergenic 50.0%
CATGGACGAATAGTGCACCA+AGG + chr8_1:59473533-59473552 None:intergenic 50.0%
GCTGTGTCACAACCAACTCT+AGG - chr8_1:59473654-59473673 Msa1204010:CDS 50.0%
! ACAACCAACTCTAGGAGTCC+AGG - chr8_1:59473662-59473681 Msa1204010:CDS 50.0%
GTTACCTGGACTCCTAGAGT+TGG + chr8_1:59473669-59473688 None:intergenic 50.0%
CGTCACTTAACTCCGTTACC+TGG + chr8_1:59473683-59473702 None:intergenic 50.0%
TGCAACCACGTTGTTGCAGA+CGG - chr8_1:59473723-59473742 Msa1204010:CDS 50.0%
! TTGCAGACGGCAAGTCGTTT+TGG - chr8_1:59473736-59473755 Msa1204010:CDS 50.0%
TCAAAAGCAAACGCCGAAGC+TGG - chr8_1:59473978-59473997 Msa1204010:CDS 50.0%
CAGTGGTGGTTACTGTTGTG+AGG - chr8_1:59474168-59474187 Msa1204010:CDS 50.0%
TGTGAGGATGAAAGCAGGAG+AGG - chr8_1:59474184-59474203 Msa1204010:CDS 50.0%
!! GCAGGAGAGGTTCTAGAGTA+TGG - chr8_1:59474197-59474216 Msa1204010:CDS 50.0%
!! TTTTGGTTGGGGAAAGCCTG+TGG - chr8_1:59474397-59474416 Msa1204010:CDS 50.0%
! GTGTTTGCTGGTGCTGAAGA+AGG - chr8_1:59474464-59474483 Msa1204010:CDS 50.0%
GGGGAATGACACTGAGTTCA+TGG - chr8_1:59474535-59474554 Msa1204010:CDS 50.0%
GGTGGAAAAGAAGGCCTGCT+TGG + chr8_1:59473362-59473381 None:intergenic 55.0%
AACTTCTTTCCACCCCTCGC+TGG - chr8_1:59473444-59473463 Msa1204010:CDS 55.0%
ACTTGCCGTCTGCAACAACG+TGG + chr8_1:59473731-59473750 None:intergenic 55.0%
TCTAGGGGCGGAATCAACCT+TGG + chr8_1:59474128-59474147 None:intergenic 55.0%
! GTTGATTCCGCCCCTAGAAG+AGG - chr8_1:59474130-59474149 Msa1204010:CDS 55.0%
CCACTTGGAGGACTACCACT+TGG + chr8_1:59474326-59474345 None:intergenic 55.0%
CCAAGTGGTAGTCCTCCAAG+TGG - chr8_1:59474323-59474342 Msa1204010:CDS 55.0%
AAGCCTGTGGCAGTTCGAAG+TGG - chr8_1:59474410-59474429 Msa1204010:CDS 55.0%
AGCCTGTGGCAGTTCGAAGT+GGG - chr8_1:59474411-59474430 Msa1204010:CDS 55.0%
ATCCCACTTCGAACTGCCAC+AGG + chr8_1:59474416-59474435 None:intergenic 55.0%
GTGGCAGTTCGAAGTGGGAT+TGG - chr8_1:59474416-59474435 Msa1204010:CDS 55.0%
GGTGGAAAAGAAGGCCTGCT+TGG + chr8_1:59473362-59473381 None:intergenic 55.0%
AACTTCTTTCCACCCCTCGC+TGG - chr8_1:59473444-59473463 Msa1204010:CDS 55.0%
ACTTGCCGTCTGCAACAACG+TGG + chr8_1:59473731-59473750 None:intergenic 55.0%
TCTAGGGGCGGAATCAACCT+TGG + chr8_1:59474128-59474147 None:intergenic 55.0%
! GTTGATTCCGCCCCTAGAAG+AGG - chr8_1:59474130-59474149 Msa1204010:CDS 55.0%
CCACTTGGAGGACTACCACT+TGG + chr8_1:59474326-59474345 None:intergenic 55.0%
CCAAGTGGTAGTCCTCCAAG+TGG - chr8_1:59474323-59474342 Msa1204010:CDS 55.0%
AAGCCTGTGGCAGTTCGAAG+TGG - chr8_1:59474410-59474429 Msa1204010:CDS 55.0%
AGCCTGTGGCAGTTCGAAGT+GGG - chr8_1:59474411-59474430 Msa1204010:CDS 55.0%
ATCCCACTTCGAACTGCCAC+AGG + chr8_1:59474416-59474435 None:intergenic 55.0%
GTGGCAGTTCGAAGTGGGAT+TGG - chr8_1:59474416-59474435 Msa1204010:CDS 55.0%
ACAAGACGACCAGCGAGGGG+TGG + chr8_1:59473456-59473475 None:intergenic 65.0%
ACAAGACGACCAGCGAGGGG+TGG + chr8_1:59473456-59473475 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 59473228 59474592 59473228 ID=Msa1204010;Name=Msa1204010
chr8_1 mRNA 59473228 59474592 59473228 ID=Msa1204010-mRNA-1;Parent=Msa1204010;Name=Msa1204010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|454
chr8_1 exon 59473228 59474592 59473228 ID=Msa1204010-mRNA-1:exon:19191;Parent=Msa1204010-mRNA-1
chr8_1 CDS 59473228 59474592 59473228 ID=Msa1204010-mRNA-1:cds;Parent=Msa1204010-mRNA-1
Gene Sequence

>Msa1204010

ATGGGTTCCATCAAAGTGATCTCCACCAGTACAATTCAAGCACCAATTGACAACAACAATCACAACTCATCAGATTATCAGAAAATTGAATTAACACCATGGGATCTCCAATTCCTCCATCTTGAAACCATCCAAGCAGGCCTTCTTTTCCACCAACAACCCATTCCAATACCAAACCATATAAACCATCTTAAACAAACACTTTCCTCCACTCTCAACTTCTTTCCACCCCTCGCTGGTCGTCTTGTAATAACGCGAGACGATGAACATAACAACGCCACATGTTCTATCATTTGCAACAACCTTGGTGCACTATTCGTCCATGCCACAGTGCAAAATACAACGGTCGTGGATATCCTTCAATCAAACTATACACCTCCAATTGTCCACTCATTTTTTCCACTTAACCGCGTTAAAAACCATGAAGCTGTGTCACAACCAACTCTAGGAGTCCAGGTAACGGAGTTAAGTGACGGCGTCTTCATTGGCTTCACATGCAACCACGTTGTTGCAGACGGCAAGTCGTTTTGGCATTTCGTTAATTCATGGTCACAAATCTCAAAAGGTTCCCACAAAATATCAAAACTCCCTTCATTTCAACGTTGGTTCCCAAACGATATTGAAATTCCAATACACTTCCCTTTCACAAAAACAGAATCACAAAACCAAGGCTCCTTAGAAGAAAGCTTAGAATCCAAGTTAGCCGAAAGAATCTTTCATTTCACAAAGGAGAAAATCGCGGAACTCAAATCAAAAGCAAACGCCGAAGCTGGAACAGAGAAAACTAAAATAACTTCATTTCAAGCGCTATTATCTCACGTTTGGCGTTCCGTTGTTCGTTGCAAAAAACCTGATCCACAAGAAGATGTTTCTTATGTGTTGTTTATAGGTGTTAGACCAAGGTTGATTCCGCCCCTAGAAGAGGATTATTTCGGAAACGCAGTGGTGGTTACTGTTGTGAGGATGAAAGCAGGAGAGGTTCTAGAGTATGGAATCGGAAAAGTTGCTTTGGAGATAAACAAGATGATTTCGTTACATTCTGATAAGATAATAAGTAATCATTACGAGTCTTGGTTAAGAACACCAAAGTTGTTTCCAAGTGGTAGTCCTCCAAGTGGTAATTCGTTAGCAATCACTTGTTGTCCAAGGTTTGATGTTTTTGGGAATGATTTTGGTTGGGGAAAGCCTGTGGCAGTTCGAAGTGGGATTGGTAACAAGTATAATGGGAAAATTACAGTGTTTGCTGGTGCTGAAGAAGGTAGTATAAATGTTGAATTTTGTCTTTCTTATGAGATTTTGGAGGCTTTGGGGAATGACACTGAGTTCATGGATCCATGTTCCACTTCCAAGTTCTATGGGAAATGA
Protein sequence

>Msa1204010

MGSIKVISTSTIQAPIDNNNHNSSDYQKIELTPWDLQFLHLETIQAGLLFHQQPIPIPNHINHLKQTLSSTLNFFPPLAGRLVITRDDEHNNATCSIICNNLGALFVHATVQNTTVVDILQSNYTPPIVHSFFPLNRVKNHEAVSQPTLGVQVTELSDGVFIGFTCNHVVADGKSFWHFVNSWSQISKGSHKISKLPSFQRWFPNDIEIPIHFPFTKTESQNQGSLEESLESKLAERIFHFTKEKIAELKSKANAEAGTEKTKITSFQALLSHVWRSVVRCKKPDPQEDVSYVLFIGVRPRLIPPLEEDYFGNAVVVTVVRMKAGEVLEYGIGKVALEINKMISLHSDKIISNHYESWLRTPKLFPSGSPPSGNSLAITCCPRFDVFGNDFGWGKPVAVRSGIGNKYNGKITVFAGAEEGSINVEFCLSYEILEALGNDTEFMDPCSTSKFYGK*