AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437690 MtrunA17_Chr5g0396481 98.281 349 6 0 7 355 1 349 0.0 710
Msa1437690 MtrunA17_Chr4g0046081 40.304 263 155 1 78 340 81 341 9.93e-59 195
Msa1437690 MtrunA17_Chr2g0283351 40.530 264 155 1 77 340 82 343 1.31e-57 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437690 AT1G08520.1 76.000 325 74 2 34 355 34 357 3.80e-174 503
Msa1437690 AT5G45930.1 38.511 309 183 4 36 340 34 339 2.34e-62 205
Msa1437690 AT4G18480.1 37.539 317 188 3 26 340 37 345 2.50e-62 205

Find 92 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTCTTGCTGCTGTTAT+TGG 0.145624 tig0028351:+50608 Msa1437690:CDS
TGGAATTGCGACAGAATTTC+AGG 0.241802 tig0028351:+53127 Msa1437690:CDS
CTCCTTCAGTCAATACATTA+AGG 0.244704 tig0028351:-52329 None:intergenic
TGTTGATGAAATTAATCTTT+TGG 0.288162 tig0028351:+52284 Msa1437690:CDS
AGAACCCTCGTCAGGGTTAT+AGG 0.296595 tig0028351:-52415 None:intergenic
CTGTGGCGAAGTATTTAAAA+TGG 0.300420 tig0028351:+53154 Msa1437690:CDS
AACCAGTGACCTTACTCTTC+TGG 0.303250 tig0028351:-51354 None:intergenic
ATGAAAATAGAGAGTGGAAT+TGG 0.318877 tig0028351:-50430 None:intergenic
CTTCGCGCTCAATCTGAAAA+TGG 0.319522 tig0028351:+50521 Msa1437690:CDS
AAGCTCGATGCTAGTACTTA+TGG 0.326021 tig0028351:+50575 Msa1437690:CDS
TGTCAAATCTCCCTTTGTTC+AGG 0.336864 tig0028351:+52014 Msa1437690:CDS
GAACCTTCTACTACTTCAAT+AGG 0.368958 tig0028351:-51306 None:intergenic
AGTAAATATTGTTGAAAGAG+AGG 0.376476 tig0028351:+52350 Msa1437690:CDS
TTTATGCTTCAGATTCCTCT+TGG 0.379940 tig0028351:+52150 Msa1437690:intron
CCGCCTATTGAAGTAGTAGA+AGG 0.388769 tig0028351:+51303 Msa1437690:CDS
AAAGAGAGGGAATCAGCTTT+AGG 0.389062 tig0028351:+52364 Msa1437690:CDS
ATTGGAGGGATTGCTATATC+AGG 0.389470 tig0028351:+51228 Msa1437690:CDS
ACTCGACATGTTTGATGAAA+TGG 0.393357 tig0028351:-50473 None:intergenic
TGGAGTTGAAGATTAGTGTA+AGG 0.396756 tig0028351:-50410 None:intergenic
TATCTCAAGGATGTTACTAT+TGG 0.405395 tig0028351:+54121 Msa1437690:CDS
AGCTTCGGAACGCTGCGTTT+TGG 0.406847 tig0028351:-50500 None:intergenic
TCAGATTGAGCGCGAAGCTT+CGG 0.408481 tig0028351:-50515 None:intergenic
AGCAATCAGAAGGGGCCTGC+AGG 0.411285 tig0028351:-52391 None:intergenic
TGGGCACGAGGGATCTGAAT+TGG 0.428468 tig0028351:-51334 None:intergenic
ACCAGTGACCTTACTCTTCT+GGG 0.432028 tig0028351:-51353 None:intergenic
ATAGCAATCCCTCCAATCCT+AGG 0.437606 tig0028351:-51222 None:intergenic
AGGAACTGCTAAAACGATAA+TGG 0.441397 tig0028351:+51257 Msa1437690:CDS
GTCACAGAGGACAGACTCAT+TGG 0.461495 tig0028351:+52174 Msa1437690:CDS
CTCCTTAATGTATTGACTGA+AGG 0.462232 tig0028351:+52327 Msa1437690:CDS
TTATGAAATGCAGATCATCT+TGG 0.465025 tig0028351:+54090 Msa1437690:intron
ATGCAAACAACATACGGAAT+GGG 0.475833 tig0028351:+50368 Msa1437690:CDS
GCAATCAGAAGGGGCCTGCA+GGG 0.479613 tig0028351:-52390 None:intergenic
AGAATCATATTCCACGCGTT+GGG 0.480306 tig0028351:-51968 None:intergenic
GAGAGAAGAGAAGAGAAGAA+TGG 0.489385 tig0028351:+50317 None:intergenic
TCACGAACAGAACCCTCGTC+AGG 0.489907 tig0028351:-52423 None:intergenic
CATGCAAACAACATACGGAA+TGG 0.490887 tig0028351:+50367 Msa1437690:exon
GCTACTGACCCTAGGATTGG+AGG 0.491446 tig0028351:+51213 Msa1437690:CDS
TCAGCTTTAGGCACCCCTGC+AGG 0.492155 tig0028351:+52376 Msa1437690:CDS
CTCGTAAAGCCTCAAGTACC+AGG 0.499131 tig0028351:-54162 None:intergenic
TGTTCTCCTCCTCAGAAGTA+AGG 0.501753 tig0028351:-50553 None:intergenic
GGCTTTACGAGGTGGTGTCC+AGG 0.504444 tig0028351:+54174 Msa1437690:CDS
CAGAATCATATTCCACGCGT+TGG 0.505702 tig0028351:-51969 None:intergenic
CTGAATAGTACCTGAACAAA+GGG 0.509664 tig0028351:-52024 None:intergenic
GTAAATATTGTTGAAAGAGA+GGG 0.512847 tig0028351:+52351 Msa1437690:CDS
TACTTGGGGCTACTGACCCT+AGG 0.515179 tig0028351:+51205 Msa1437690:CDS
GGAGTTGAAGATTAGTGTAA+GGG 0.517742 tig0028351:-50409 None:intergenic
CGAGGGATCTGAATTGGCTA+TGG 0.524852 tig0028351:-51328 None:intergenic
TGAGCTTCAGCAAGTAAGCC+TGG 0.525679 tig0028351:-52246 None:intergenic
TGAAATGGCAAAGAGAGAAA+CGG 0.542028 tig0028351:-50458 None:intergenic
GAAAACCGTGTTGCAGCTGT+TGG 0.544146 tig0028351:+53107 Msa1437690:CDS
CATTGGATCAGTTGATGTTG+AGG 0.551202 tig0028351:+52191 Msa1437690:CDS
AGTATTTAAAATGGTTGATG+AGG 0.551410 tig0028351:+53163 Msa1437690:CDS
ACCTTACTCTTCTGGGCACG+AGG 0.558993 tig0028351:-51346 None:intergenic
GGCACGACTGTTTACCAACC+AGG 0.559294 tig0028351:+52228 Msa1437690:CDS
CTTCAGCAAGTAAGCCTGGT+TGG 0.561355 tig0028351:-52242 None:intergenic
CAAAGAACAATTAAAATACC+TGG 0.562014 tig0028351:+54144 Msa1437690:CDS
GGGGCTACTGACCCTAGGAT+TGG 0.568553 tig0028351:+51210 Msa1437690:CDS
GGTTATAGGTAGCAATCAGA+AGG 0.570961 tig0028351:-52401 None:intergenic
CAATCAGAAGGGGCCTGCAG+GGG 0.574993 tig0028351:-52389 None:intergenic
ATTAAAATACCTGGTACTTG+AGG 0.575547 tig0028351:+54153 Msa1437690:CDS
GTTGAGGAGTCTGTGAAGAC+TGG 0.586435 tig0028351:+52207 Msa1437690:CDS
CTACTGACCCTAGGATTGGA+GGG 0.596769 tig0028351:+51214 Msa1437690:CDS
ATCGCATTGCAATTAACTTG+AGG 0.596901 tig0028351:+52457 Msa1437690:CDS
CTGTCCTCTGTGACTCCAAG+AGG 0.597863 tig0028351:-52165 None:intergenic
TCTGAATAGTACCTGAACAA+AGG 0.600732 tig0028351:-52025 None:intergenic
CGCGTGGAATATGATTCTGA+TGG 0.606136 tig0028351:+51973 Msa1437690:CDS
AGATGATCTTGCCCAACGCG+TGG 0.610183 tig0028351:+51957 Msa1437690:CDS
GTACTTGAGGCTTTACGAGG+TGG 0.612443 tig0028351:+54166 Msa1437690:CDS
TGCTGCGGTCCTTACTTCTG+AGG 0.618181 tig0028351:+50544 Msa1437690:CDS
TGCGGTCCTTACTTCTGAGG+AGG 0.618491 tig0028351:+50547 Msa1437690:CDS
TGGCCAATAACAGCAGCAAG+AGG 0.621831 tig0028351:-50611 None:intergenic
GAGTTGAAGATTAGTGTAAG+GGG 0.624035 tig0028351:-50408 None:intergenic
GTTATAGGTAGCAATCAGAA+GGG 0.625655 tig0028351:-52400 None:intergenic
TTACTTGCTGAAGCTCATAG+AGG 0.627283 tig0028351:+52252 Msa1437690:CDS
TAGCAATCCCTCCAATCCTA+GGG 0.627946 tig0028351:-51221 None:intergenic
CACGAACAGAACCCTCGTCA+GGG 0.631145 tig0028351:-52422 None:intergenic
CTGGTACTTGAGGCTTTACG+AGG 0.631220 tig0028351:+54163 Msa1437690:CDS
TCAATCTGAAAATGGTGCTG+CGG 0.632894 tig0028351:+50529 Msa1437690:CDS
GGCCAATAACAGCAGCAAGA+GGG 0.644982 tig0028351:-50610 None:intergenic
CTTGGCTAGAGAGTATCTCA+AGG 0.645683 tig0028351:+54108 Msa1437690:CDS
TACAGACAATGCAAAGACAC+AGG 0.654379 tig0028351:+53187 Msa1437690:CDS
CAATTCCAACAGCTGCAACA+CGG 0.658426 tig0028351:-53112 None:intergenic
TGCTACCTATAACCCTGACG+AGG 0.663872 tig0028351:+52410 Msa1437690:CDS
CCTTACTCTTCTGGGCACGA+GGG 0.673244 tig0028351:-51345 None:intergenic
GAGGGATTGCTATATCAGGA+AGG 0.673630 tig0028351:+51232 Msa1437690:CDS
CCTTCTACTACTTCAATAGG+CGG 0.685944 tig0028351:-51303 None:intergenic
ATTGCTATATCAGGAAGGCG+AGG 0.686132 tig0028351:+51237 Msa1437690:CDS
TTATAGGTAGCAATCAGAAG+GGG 0.696472 tig0028351:-52399 None:intergenic
GCTAAAACGATAATGGCACG+TGG 0.711240 tig0028351:+51264 Msa1437690:CDS
GCTACCTATAACCCTGACGA+GGG 0.713287 tig0028351:+52411 Msa1437690:CDS
ACAGAATTTCAGGATAACTG+TGG 0.720569 tig0028351:+53137 Msa1437690:CDS
GATTCCTCTTGGAGTCACAG+AGG 0.727534 tig0028351:+52161 Msa1437690:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTCAATAAAAAAAAAA+AGG - tig0028351:51384-51403 None:intergenic 10.0%
!! AAAATAACTTTACAAGTTTA+AGG + tig0028351:51436-51455 Msa1437690:intron 15.0%
!! TTAAAGGTAAAAATAAGAAA+GGG - tig0028351:51886-51905 None:intergenic 15.0%
!! AAATTAAGAGTAATATTTGT+AGG + tig0028351:51929-51948 Msa1437690:intron 15.0%
!! TAAATGCTAAAAGTAAAAAT+TGG - tig0028351:52884-52903 None:intergenic 15.0%
!!! ATTAGTTTATAAAACTATGA+TGG - tig0028351:52957-52976 None:intergenic 15.0%
!!! TTTTATTTATTACGTTCATA+GGG - tig0028351:53684-53703 None:intergenic 15.0%
!!! ATTTTATTTATTACGTTCAT+AGG - tig0028351:53685-53704 None:intergenic 15.0%
!!! TACATAATTTTATCCAAATT+GGG + tig0028351:53819-53838 Msa1437690:intron 15.0%
!! ACATTGACATTATAATATCA+TGG + tig0028351:51518-51537 Msa1437690:intron 20.0%
!! CATTGACATTATAATATCAT+GGG + tig0028351:51519-51538 Msa1437690:intron 20.0%
!! AAATCAATTCATTAATTCTC+CGG - tig0028351:51804-51823 None:intergenic 20.0%
!! TAAAGGTAAAAATAAGAAAG+GGG - tig0028351:51885-51904 None:intergenic 20.0%
!! CTTAAAGGTAAAAATAAGAA+AGG - tig0028351:51887-51906 None:intergenic 20.0%
!!! CTTTTAAAACAATGACTTAA+AGG - tig0028351:51902-51921 None:intergenic 20.0%
!!! TGTTGATGAAATTAATCTTT+TGG + tig0028351:52284-52303 Msa1437690:CDS 20.0%
!!! TACTTTTAGCATTTACAATT+TGG + tig0028351:52889-52908 Msa1437690:intron 20.0%
!! ACTAATAAAAAATGATTGAG+TGG + tig0028351:52971-52990 Msa1437690:intron 20.0%
!! CATCTAATTAACTAAGTATT+AGG - tig0028351:53012-53031 None:intergenic 20.0%
!! ATAATTTCTATTGTGAAAAC+CGG - tig0028351:53559-53578 None:intergenic 20.0%
!!! CTACATAATTTTATCCAAAT+TGG + tig0028351:53818-53837 Msa1437690:intron 20.0%
!!! TCCTTTTGTCTATTTTATTT+TGG + tig0028351:53965-53984 Msa1437690:intron 20.0%
!! ACCAAAATAAAATAGACAAA+AGG - tig0028351:53969-53988 None:intergenic 20.0%
! TAAGAAAAGGAAGAATTACT+TGG - tig0028351:50634-50653 None:intergenic 25.0%
! AAATGTTGAAAGCTAAGAAA+AGG - tig0028351:50647-50666 None:intergenic 25.0%
! ACTCATTATTCATTCTTAGA+AGG + tig0028351:50724-50743 Msa1437690:intron 25.0%
! AGAAAATGACAGTTACTAAA+TGG + tig0028351:50822-50841 Msa1437690:intron 25.0%
! GAAAATGACAGTTACTAAAT+GGG + tig0028351:50823-50842 Msa1437690:intron 25.0%
!! ATTAAAACTGCTCTTTTACT+TGG + tig0028351:51189-51208 Msa1437690:CDS 25.0%
!! TTAAAACTGCTCTTTTACTT+GGG + tig0028351:51190-51209 Msa1437690:CDS 25.0%
! ATAACTTTACAAGTTTAAGG+TGG + tig0028351:51439-51458 Msa1437690:intron 25.0%
! GATGTAGTAACATTGTTAAT+TGG + tig0028351:51596-51615 Msa1437690:intron 25.0%
! TTAAGAGTAATATTTGTAGG+TGG + tig0028351:51932-51951 Msa1437690:intron 25.0%
! TAAGAGTAATATTTGTAGGT+GGG + tig0028351:51933-51952 Msa1437690:intron 25.0%
!! TGAAATTAATCTTTTGGATG+AGG + tig0028351:52290-52309 Msa1437690:CDS 25.0%
!! GAAATTAATCTTTTGGATGA+GGG + tig0028351:52291-52310 Msa1437690:CDS 25.0%
! AGTAAATATTGTTGAAAGAG+AGG + tig0028351:52350-52369 Msa1437690:CDS 25.0%
! GTAAATATTGTTGAAAGAGA+GGG + tig0028351:52351-52370 Msa1437690:CDS 25.0%
! AAAATTATGAAGAATCCTGA+AGG - tig0028351:52508-52527 None:intergenic 25.0%
!!! GGCTTAAAAAGTTTTTCAAT+TGG - tig0028351:52936-52955 None:intergenic 25.0%
! ATTAACTAAGTATTAGGTCA+GGG - tig0028351:53006-53025 None:intergenic 25.0%
! AATTAACTAAGTATTAGGTC+AGG - tig0028351:53007-53026 None:intergenic 25.0%
! ATAATTAGAAATAAGGGAGA+TGG - tig0028351:53051-53070 None:intergenic 25.0%
! GGGTGTATAATTAGAAATAA+GGG - tig0028351:53057-53076 None:intergenic 25.0%
!! AGTATTTAAAATGGTTGATG+AGG + tig0028351:53163-53182 Msa1437690:CDS 25.0%
! AACAATGTATAGATAGTAAG+AGG - tig0028351:53460-53479 None:intergenic 25.0%
! TAATTTCTATTGTGAAAACC+GGG - tig0028351:53558-53577 None:intergenic 25.0%
! TAAATGACAGTTAAGATAGA+TGG + tig0028351:53788-53807 Msa1437690:intron 25.0%
! AAATTAGTAATTTCGTGGTA+AGG - tig0028351:53907-53926 None:intergenic 25.0%
! TGGTAAAATTAGTAATTTCG+TGG - tig0028351:53912-53931 None:intergenic 25.0%
!!! CAGCTTTTATTTCACAATAT+AGG + tig0028351:54024-54043 Msa1437690:intron 25.0%
! CAAAGAACAATTAAAATACC+TGG + tig0028351:54144-54163 Msa1437690:CDS 25.0%
! CTTTTCATGCAAACAACATA+CGG + tig0028351:50362-50381 Msa1437690:exon 30.0%
ATGAAAATAGAGAGTGGAAT+TGG - tig0028351:50433-50452 None:intergenic 30.0%
!! GTTTTGATGAAAATAGAGAG+TGG - tig0028351:50439-50458 None:intergenic 30.0%
TCAAGTAATGATAGAAGAGT+AGG + tig0028351:50998-51017 Msa1437690:intron 30.0%
CAAGTAATGATAGAAGAGTA+GGG + tig0028351:50999-51018 Msa1437690:intron 30.0%
AAGTAATGATAGAAGAGTAG+GGG + tig0028351:51000-51019 Msa1437690:intron 30.0%
!! ATGTGACTTTTTCTTTGATG+AGG + tig0028351:51050-51069 Msa1437690:intron 30.0%
!! AATCGTTTGAAAAGTTGGTA+AGG - tig0028351:51087-51106 None:intergenic 30.0%
! ACCAACTTTTCAAACGATTT+AGG + tig0028351:51088-51107 Msa1437690:intron 30.0%
TCCTAAATCGTTTGAAAAGT+TGG - tig0028351:51092-51111 None:intergenic 30.0%
!!! AGTTGAATTTTTGCTGTTGA+AGG + tig0028351:51129-51148 Msa1437690:intron 30.0%
AGGATGAAGTTTGCAAATTA+TGG + tig0028351:51149-51168 Msa1437690:intron 30.0%
! TAAAACTGCTCTTTTACTTG+GGG + tig0028351:51191-51210 Msa1437690:CDS 30.0%
AGAAAAATGTTAGCCAGTTT+GGG + tig0028351:51398-51417 Msa1437690:intron 30.0%
TAAAAGTAGATATGAGCTCA+AGG + tig0028351:51482-51501 Msa1437690:intron 30.0%
AAAAGTAGATATGAGCTCAA+GGG + tig0028351:51483-51502 Msa1437690:intron 30.0%
GTTTAGTCATACTTTCTCAA+TGG + tig0028351:51546-51565 Msa1437690:intron 30.0%
GATGTAGTAACACTGTTAAT+TGG + tig0028351:51653-51672 Msa1437690:intron 30.0%
ACACAACACAAAAACTTCAA+GGG - tig0028351:51766-51785 None:intergenic 30.0%
AACACAACACAAAAACTTCA+AGG - tig0028351:51767-51786 None:intergenic 30.0%
TGACATCACATCTTTGTAAT+TGG + tig0028351:51838-51857 Msa1437690:intron 30.0%
GACATCACATCTTTGTAATT+GGG + tig0028351:51839-51858 Msa1437690:intron 30.0%
GCTAGAACTTAATCACATTA+TGG - tig0028351:52062-52081 None:intergenic 30.0%
GGGGTGTATAATTAGAAATA+AGG - tig0028351:53058-53077 None:intergenic 30.0%
GAGGGTAATTAAAGTCATAT+TGG + tig0028351:53219-53238 Msa1437690:intron 30.0%
TACACATAACCCCAAAAAAT+TGG + tig0028351:53363-53382 Msa1437690:intron 30.0%
TTGTTTGCACTAAATCCAAT+CGG + tig0028351:53421-53440 Msa1437690:intron 30.0%
TCTGTATTTCTCCTCTAATT+TGG + tig0028351:53483-53502 Msa1437690:intron 30.0%
! CAGTAATCATTAACTTGAAC+TGG + tig0028351:53531-53550 Msa1437690:intron 30.0%
AATTTCTATTGTGAAAACCG+GGG - tig0028351:53557-53576 None:intergenic 30.0%
! ACGTTAAAAACGTGTTTTGT+AGG - tig0028351:53617-53636 None:intergenic 30.0%
! TACAAAACACGTTTTTAACG+TGG + tig0028351:53616-53635 Msa1437690:intron 30.0%
! ACAAAACACGTTTTTAACGT+GGG + tig0028351:53617-53636 Msa1437690:intron 30.0%
! TTCTTTACAGGTTTTCTTGT+CGG - tig0028351:53648-53667 None:intergenic 30.0%
TTATGCTTACAATCTTACAG+TGG - tig0028351:53731-53750 None:intergenic 30.0%
! CTTAACTGTCATTTACATTG+TGG - tig0028351:53783-53802 None:intergenic 30.0%
! TTTATCCAAATTGGGTTTTC+AGG + tig0028351:53827-53846 Msa1437690:intron 30.0%
TTACCATATATATGCTGTGT+TGG + tig0028351:53926-53945 Msa1437690:intron 30.0%
ATACCAACACAGCATATATA+TGG - tig0028351:53932-53951 None:intergenic 30.0%
TGAAATAAAAGCTGTCAACT+AGG - tig0028351:54018-54037 None:intergenic 30.0%
TTATGAAATGCAGATCATCT+TGG + tig0028351:54090-54109 Msa1437690:intron 30.0%
TATCTCAAGGATGTTACTAT+TGG + tig0028351:54121-54140 Msa1437690:CDS 30.0%
ATTAAAATACCTGGTACTTG+AGG + tig0028351:54153-54172 Msa1437690:CDS 30.0%
ATGCAAACAACATACGGAAT+GGG + tig0028351:50368-50387 Msa1437690:CDS 35.0%
GAGTTGAAGATTAGTGTAAG+GGG - tig0028351:50411-50430 None:intergenic 35.0%
GGAGTTGAAGATTAGTGTAA+GGG - tig0028351:50412-50431 None:intergenic 35.0%
TGGAGTTGAAGATTAGTGTA+AGG - tig0028351:50413-50432 None:intergenic 35.0%
TGAAATGGCAAAGAGAGAAA+CGG - tig0028351:50461-50480 None:intergenic 35.0%
ACTCGACATGTTTGATGAAA+TGG - tig0028351:50476-50495 None:intergenic 35.0%
GCAAATTATGGTTGTTATGC+AGG + tig0028351:51161-51180 Msa1437690:intron 35.0%
AGGAACTGCTAAAACGATAA+TGG + tig0028351:51257-51276 Msa1437690:CDS 35.0%
GAACCTTCTACTACTTCAAT+AGG - tig0028351:51309-51328 None:intergenic 35.0%
GAGAAAAATGTTAGCCAGTT+TGG + tig0028351:51397-51416 Msa1437690:intron 35.0%
GAAAAATGTTAGCCAGTTTG+GGG + tig0028351:51399-51418 Msa1437690:intron 35.0%
! TTATTTCTCAATCCCCAAAC+TGG - tig0028351:51414-51433 None:intergenic 35.0%
!! ACTTCTGGTTCTAACTACTA+AGG - tig0028351:51736-51755 None:intergenic 35.0%
! TTCAAGGGATATGTTACTTC+TGG - tig0028351:51751-51770 None:intergenic 35.0%
CAAAGATGTGATGTCAATCA+TGG - tig0028351:51834-51853 None:intergenic 35.0%
CTGAATAGTACCTGAACAAA+GGG - tig0028351:52027-52046 None:intergenic 35.0%
TCTGAATAGTACCTGAACAA+AGG - tig0028351:52028-52047 None:intergenic 35.0%
TTTATGCTTCAGATTCCTCT+TGG + tig0028351:52150-52169 Msa1437690:intron 35.0%
!! CTCCTTAATGTATTGACTGA+AGG + tig0028351:52327-52346 Msa1437690:CDS 35.0%
CTCCTTCAGTCAATACATTA+AGG - tig0028351:52332-52351 None:intergenic 35.0%
TTATAGGTAGCAATCAGAAG+GGG - tig0028351:52402-52421 None:intergenic 35.0%
GTTATAGGTAGCAATCAGAA+GGG - tig0028351:52403-52422 None:intergenic 35.0%
! ATCGCATTGCAATTAACTTG+AGG + tig0028351:52457-52476 Msa1437690:CDS 35.0%
! TTTTCCTCCCTTTACAAGAT+AGG + tig0028351:52524-52543 Msa1437690:intron 35.0%
GAGACAAATACGGAAGAAAT+CGG - tig0028351:52750-52769 None:intergenic 35.0%
GAGAAAAGAGGAGACAAATA+CGG - tig0028351:52760-52779 None:intergenic 35.0%
TTACAATTTGGCATCTGACA+TGG + tig0028351:52901-52920 Msa1437690:intron 35.0%
! ACACGGTTTTCAAAACTCAT+TGG - tig0028351:53098-53117 None:intergenic 35.0%
ACAGAATTTCAGGATAACTG+TGG + tig0028351:53137-53156 Msa1437690:CDS 35.0%
! CTGTGGCGAAGTATTTAAAA+TGG + tig0028351:53154-53173 Msa1437690:CDS 35.0%
ATGACTTTAATTACCCTCCT+AGG - tig0028351:53217-53236 None:intergenic 35.0%
TGGAAAAGTGAAGAACAGAT+AGG + tig0028351:53239-53258 Msa1437690:intron 35.0%
AAGAACAGATAGGAAACACT+AGG + tig0028351:53249-53268 Msa1437690:intron 35.0%
AGAACAGATAGGAAACACTA+GGG + tig0028351:53250-53269 Msa1437690:intron 35.0%
AGGATGATTGCAAAATCACA+AGG + tig0028351:53310-53329 Msa1437690:intron 35.0%
GGATGATTGCAAAATCACAA+GGG + tig0028351:53311-53330 Msa1437690:intron 35.0%
GAAGAACACGAGTTATAGAT+AGG + tig0028351:53340-53359 Msa1437690:intron 35.0%
AATTAGTGCAAAGTTTGCGA+GGG - tig0028351:53403-53422 None:intergenic 35.0%
AGAGATCACAACCAAATTAG+AGG - tig0028351:53497-53516 None:intergenic 35.0%
TACATTGTGGAAATGACACT+AGG - tig0028351:53770-53789 None:intergenic 35.0%
CATGCAAACAACATACGGAA+TGG + tig0028351:50367-50386 Msa1437690:exon 40.0%
! TCAATCTGAAAATGGTGCTG+CGG + tig0028351:50529-50548 Msa1437690:CDS 40.0%
AAGCTCGATGCTAGTACTTA+TGG + tig0028351:50575-50594 Msa1437690:CDS 40.0%
AGTCACACTATGGGTCTATT+TGG - tig0028351:50899-50918 None:intergenic 40.0%
ATCCAGCATAGTCACACTAT+GGG - tig0028351:50908-50927 None:intergenic 40.0%
AATCCAGCATAGTCACACTA+TGG - tig0028351:50909-50928 None:intergenic 40.0%
GATAGAAGAGTAGGGGAAAA+TGG + tig0028351:51007-51026 Msa1437690:intron 40.0%
ATTGGAGGGATTGCTATATC+AGG + tig0028351:51228-51247 Msa1437690:CDS 40.0%
CCTTCTACTACTTCAATAGG+CGG - tig0028351:51306-51325 None:intergenic 40.0%
AATTCTCCGGCAGAAAAAGA+GGG - tig0028351:51791-51810 None:intergenic 40.0%
TAATTCTCCGGCAGAAAAAG+AGG - tig0028351:51792-51811 None:intergenic 40.0%
AGAATCATATTCCACGCGTT+GGG - tig0028351:51971-51990 None:intergenic 40.0%
TGTCAAATCTCCCTTTGTTC+AGG + tig0028351:52014-52033 Msa1437690:CDS 40.0%
! CATTGGATCAGTTGATGTTG+AGG + tig0028351:52191-52210 Msa1437690:CDS 40.0%
! TTACTTGCTGAAGCTCATAG+AGG + tig0028351:52252-52271 Msa1437690:CDS 40.0%
AAAGAGAGGGAATCAGCTTT+AGG + tig0028351:52364-52383 Msa1437690:CDS 40.0%
GGTTATAGGTAGCAATCAGA+AGG - tig0028351:52404-52423 None:intergenic 40.0%
ATCTACAATGTTGCTCCTTC+AGG + tig0028351:52490-52509 Msa1437690:intron 40.0%
TCTTGGGCCTATCTTGTAAA+GGG - tig0028351:52534-52553 None:intergenic 40.0%
ATCTTGGGCCTATCTTGTAA+AGG - tig0028351:52535-52554 None:intergenic 40.0%
!! AATGAACCAGCTGTTGTTTC+CGG - tig0028351:52860-52879 None:intergenic 40.0%
TGGAATTGCGACAGAATTTC+AGG + tig0028351:53127-53146 Msa1437690:CDS 40.0%
TACAGACAATGCAAAGACAC+AGG + tig0028351:53187-53206 Msa1437690:CDS 40.0%
AATCATCCTGATTCAGAGTC+AGG - tig0028351:53299-53318 None:intergenic 40.0%
TGATTGCAAAATCACAAGGG+AGG + tig0028351:53314-53333 Msa1437690:intron 40.0%
!!! GAGGACTCTCCAATTTTTTG+GGG - tig0028351:53375-53394 None:intergenic 40.0%
!!! CGAGGACTCTCCAATTTTTT+GGG - tig0028351:53376-53395 None:intergenic 40.0%
CAATTAGTGCAAAGTTTGCG+AGG - tig0028351:53404-53423 None:intergenic 40.0%
GGAAATAGTAGAGATCCGAT+TGG - tig0028351:53439-53458 None:intergenic 40.0%
! CGTGTTTTGTAGGCAGAATA+AGG - tig0028351:53607-53626 None:intergenic 40.0%
TATTACGTTCATAGGGCTTC+AGG - tig0028351:53677-53696 None:intergenic 40.0%
GACAGTTAAGATAGATGGTG+AGG + tig0028351:53793-53812 Msa1437690:intron 40.0%
CTTGACCTGAAAACCCAATT+TGG - tig0028351:53835-53854 None:intergenic 40.0%
AGGTTTACAAAGTCTCAGCT+CGG - tig0028351:53887-53906 None:intergenic 40.0%
CTTCGCGCTCAATCTGAAAA+TGG + tig0028351:50521-50540 Msa1437690:CDS 45.0%
TGTTCTCCTCCTCAGAAGTA+AGG - tig0028351:50556-50575 None:intergenic 45.0%
TTCCCTCTTGCTGCTGTTAT+TGG + tig0028351:50608-50627 Msa1437690:CDS 45.0%
AGAAGAGTAGGGGAAAATGG+TGG + tig0028351:51010-51029 Msa1437690:intron 45.0%
TAGCAATCCCTCCAATCCTA+GGG - tig0028351:51224-51243 None:intergenic 45.0%
ATAGCAATCCCTCCAATCCT+AGG - tig0028351:51225-51244 None:intergenic 45.0%
GAGGGATTGCTATATCAGGA+AGG + tig0028351:51232-51251 Msa1437690:CDS 45.0%
ATTGCTATATCAGGAAGGCG+AGG + tig0028351:51237-51256 Msa1437690:CDS 45.0%
! GCTAAAACGATAATGGCACG+TGG + tig0028351:51264-51283 Msa1437690:CDS 45.0%
CCGCCTATTGAAGTAGTAGA+AGG + tig0028351:51303-51322 Msa1437690:CDS 45.0%
ACCAGTGACCTTACTCTTCT+GGG - tig0028351:51356-51375 None:intergenic 45.0%
AACCAGTGACCTTACTCTTC+TGG - tig0028351:51357-51376 None:intergenic 45.0%
AGATATGAGCTCAAGGGCTA+AGG + tig0028351:51489-51508 Msa1437690:intron 45.0%
ATTCTCCGGCAGAAAAAGAG+GGG - tig0028351:51790-51809 None:intergenic 45.0%
CAGAATCATATTCCACGCGT+TGG - tig0028351:51972-51991 None:intergenic 45.0%
CGCGTGGAATATGATTCTGA+TGG + tig0028351:51973-51992 Msa1437690:CDS 45.0%
TCATCGCCACACAAGATCTT+GGG - tig0028351:52550-52569 None:intergenic 45.0%
GAGCAGGAAATGAAGACACA+GGG - tig0028351:52728-52747 None:intergenic 45.0%
AATACGGAAGAAATCGGAGC+AGG - tig0028351:52744-52763 None:intergenic 45.0%
GAGAGAGAGAGAGAGAAAAG+AGG - tig0028351:52772-52791 None:intergenic 45.0%
!! ATGAACCAGCTGTTGTTTCC+GGG - tig0028351:52859-52878 None:intergenic 45.0%
CAATTCCAACAGCTGCAACA+CGG - tig0028351:53115-53134 None:intergenic 45.0%
ATCCTGATTCAGAGTCAGGA+AGG - tig0028351:53295-53314 None:intergenic 45.0%
!!! GCGAGGACTCTCCAATTTTT+TGG - tig0028351:53377-53396 None:intergenic 45.0%
! TCATTAACTTGAACTGGCCC+CGG + tig0028351:53537-53556 Msa1437690:intron 45.0%
AGGCAGAATAAGGATGAGCA+GGG - tig0028351:53597-53616 None:intergenic 45.0%
TAGGCAGAATAAGGATGAGC+AGG - tig0028351:53598-53617 None:intergenic 45.0%
TTCAGGCTGCTCTTCTTTAC+AGG - tig0028351:53660-53679 None:intergenic 45.0%
CAACTGCATTGTTTGCCTCT+GGG - tig0028351:53859-53878 None:intergenic 45.0%
TCAACTGCATTGTTTGCCTC+TGG - tig0028351:53860-53879 None:intergenic 45.0%
!! CTTGGCTAGAGAGTATCTCA+AGG + tig0028351:54108-54127 Msa1437690:CDS 45.0%
TCAGATTGAGCGCGAAGCTT+CGG - tig0028351:50518-50537 None:intergenic 50.0%
GGCCAATAACAGCAGCAAGA+GGG - tig0028351:50613-50632 None:intergenic 50.0%
TGGCCAATAACAGCAGCAAG+AGG - tig0028351:50614-50633 None:intergenic 50.0%
GACCCATAGTGTGACTATGC+TGG + tig0028351:50903-50922 Msa1437690:intron 50.0%
CTACTGACCCTAGGATTGGA+GGG + tig0028351:51214-51233 Msa1437690:CDS 50.0%
CGAGGGATCTGAATTGGCTA+TGG - tig0028351:51331-51350 None:intergenic 50.0%
! GTGTTCCCCTCTTTTTCTGC+CGG + tig0028351:51782-51801 Msa1437690:intron 50.0%
GATTCCTCTTGGAGTCACAG+AGG + tig0028351:52161-52180 Msa1437690:intron 50.0%
GTCACAGAGGACAGACTCAT+TGG + tig0028351:52174-52193 Msa1437690:CDS 50.0%
GTTGAGGAGTCTGTGAAGAC+TGG + tig0028351:52207-52226 Msa1437690:CDS 50.0%
CTTCAGCAAGTAAGCCTGGT+TGG - tig0028351:52245-52264 None:intergenic 50.0%
TGAGCTTCAGCAAGTAAGCC+TGG - tig0028351:52249-52268 None:intergenic 50.0%
TGCTACCTATAACCCTGACG+AGG + tig0028351:52410-52429 Msa1437690:CDS 50.0%
GCTACCTATAACCCTGACGA+GGG + tig0028351:52411-52430 Msa1437690:CDS 50.0%
AGAACCCTCGTCAGGGTTAT+AGG - tig0028351:52418-52437 None:intergenic 50.0%
TGGGCCTATCTTGTAAAGGG+AGG - tig0028351:52531-52550 None:intergenic 50.0%
GATAGGCCCAAGATCTTGTG+TGG + tig0028351:52541-52560 Msa1437690:intron 50.0%
CTCATCGCCACACAAGATCT+TGG - tig0028351:52551-52570 None:intergenic 50.0%
CAAGATCTTGTGTGGCGATG+AGG + tig0028351:52549-52568 Msa1437690:intron 50.0%
CAACCCTTATCCCACTGAGT+GGG + tig0028351:52605-52624 Msa1437690:intron 50.0%
AACCCTTATCCCACTGAGTG+GGG + tig0028351:52606-52625 Msa1437690:intron 50.0%
AACCCCACTCAGTGGGATAA+GGG - tig0028351:52611-52630 None:intergenic 50.0%
GGAGCAGGAAATGAAGACAC+AGG - tig0028351:52729-52748 None:intergenic 50.0%
TGGAAGATCTGCACTGCAGA+GGG - tig0028351:53078-53097 None:intergenic 50.0%
TTGGAAGATCTGCACTGCAG+AGG - tig0028351:53079-53098 None:intergenic 50.0%
GAAAACCGTGTTGCAGCTGT+TGG + tig0028351:53107-53126 Msa1437690:CDS 50.0%
GCAAAGACACAGGTATGCCT+AGG + tig0028351:53197-53216 Msa1437690:intron 50.0%
AAGACACAGGTATGCCTAGG+AGG + tig0028351:53200-53219 Msa1437690:intron 50.0%
AGACACAGGTATGCCTAGGA+GGG + tig0028351:53201-53220 Msa1437690:intron 50.0%
CTCCTTCCTGACTCTGAATC+AGG + tig0028351:53290-53309 Msa1437690:intron 50.0%
! GAGCAGGGGGAACAGAATTT+TGG - tig0028351:53582-53601 None:intergenic 50.0%
GCAGAATAAGGATGAGCAGG+GGG - tig0028351:53595-53614 None:intergenic 50.0%
GGCAGAATAAGGATGAGCAG+GGG - tig0028351:53596-53615 None:intergenic 50.0%
!!! GTTTTCAGGTCAAGTCCCAG+AGG + tig0028351:53841-53860 Msa1437690:intron 50.0%
CTCGTAAAGCCTCAAGTACC+AGG - tig0028351:54165-54184 None:intergenic 50.0%
CTGGTACTTGAGGCTTTACG+AGG + tig0028351:54163-54182 Msa1437690:CDS 50.0%
GTACTTGAGGCTTTACGAGG+TGG + tig0028351:54166-54185 Msa1437690:CDS 50.0%
! AGCTTCGGAACGCTGCGTTT+TGG - tig0028351:50503-50522 None:intergenic 55.0%
TGCTGCGGTCCTTACTTCTG+AGG + tig0028351:50544-50563 Msa1437690:CDS 55.0%
! TGCGGTCCTTACTTCTGAGG+AGG + tig0028351:50547-50566 Msa1437690:CDS 55.0%
TACTTGGGGCTACTGACCCT+AGG + tig0028351:51205-51224 Msa1437690:CDS 55.0%
GCTACTGACCCTAGGATTGG+AGG + tig0028351:51213-51232 Msa1437690:CDS 55.0%
TGGGCACGAGGGATCTGAAT+TGG - tig0028351:51337-51356 None:intergenic 55.0%
CCTTACTCTTCTGGGCACGA+GGG - tig0028351:51348-51367 None:intergenic 55.0%
ACCTTACTCTTCTGGGCACG+AGG - tig0028351:51349-51368 None:intergenic 55.0%
GCCCAGAAGAGTAAGGTCAC+TGG + tig0028351:51352-51371 Msa1437690:intron 55.0%
AGATGATCTTGCCCAACGCG+TGG + tig0028351:51957-51976 Msa1437690:CDS 55.0%
CTGTCCTCTGTGACTCCAAG+AGG - tig0028351:52168-52187 None:intergenic 55.0%
GGCACGACTGTTTACCAACC+AGG + tig0028351:52228-52247 Msa1437690:CDS 55.0%
CACGAACAGAACCCTCGTCA+GGG - tig0028351:52425-52444 None:intergenic 55.0%
TCACGAACAGAACCCTCGTC+AGG - tig0028351:52426-52445 None:intergenic 55.0%
CCACTCAGTGGGATAAGGGT+TGG - tig0028351:52607-52626 None:intergenic 55.0%
CCAACCCTTATCCCACTGAG+TGG + tig0028351:52604-52623 Msa1437690:intron 55.0%
CAACCCCACTCAGTGGGATA+AGG - tig0028351:52612-52631 None:intergenic 55.0%
CTTATCCCACTGAGTGGGGT+TGG + tig0028351:52610-52629 Msa1437690:intron 55.0%
AGCTTCCAACCCCACTCAGT+GGG - tig0028351:52618-52637 None:intergenic 55.0%
TAGCTTCCAACCCCACTCAG+TGG - tig0028351:52619-52638 None:intergenic 55.0%
!! ACCAGCTGTTGTTTCCGGGA+GGG - tig0028351:52855-52874 None:intergenic 55.0%
!! AACCAGCTGTTGTTTCCGGG+AGG - tig0028351:52856-52875 None:intergenic 55.0%
GGAAGATCTGCACTGCAGAG+GGG - tig0028351:53077-53096 None:intergenic 55.0%
! AAAGTTTGCGAGGGAGTGCG+AGG - tig0028351:53394-53413 None:intergenic 55.0%
GGGGCTACTGACCCTAGGAT+TGG + tig0028351:51210-51229 Msa1437690:CDS 60.0%
CCCTCGTGCCCAGAAGAGTA+AGG + tig0028351:51345-51364 Msa1437690:intron 60.0%
!! TCAGCTTTAGGCACCCCTGC+AGG + tig0028351:52376-52395 Msa1437690:CDS 60.0%
CAATCAGAAGGGGCCTGCAG+GGG - tig0028351:52392-52411 None:intergenic 60.0%
GCAATCAGAAGGGGCCTGCA+GGG - tig0028351:52393-52412 None:intergenic 60.0%
AGCAATCAGAAGGGGCCTGC+AGG - tig0028351:52394-52413 None:intergenic 60.0%
TCTCTCTCTCTCTCCCCTCC+CGG + tig0028351:52838-52857 Msa1437690:intron 60.0%
!! CCAGCTGTTGTTTCCGGGAG+GGG - tig0028351:52854-52873 None:intergenic 60.0%
CCCCTCCCGGAAACAACAGC+TGG + tig0028351:52851-52870 Msa1437690:intron 65.0%
Chromosome Type Strat End Strand Name
tig0028351 gene 50318 54195 50318 ID=Msa1437690;Name=Msa1437690
tig0028351 mRNA 50318 54195 50318 ID=Msa1437690-mRNA-1;Parent=Msa1437690;Name=Msa1437690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=50|1|0.83|1|1|1|6|0|355
tig0028351 exon 50318 50634 50318 ID=Msa1437690-mRNA-1:exon:10810;Parent=Msa1437690-mRNA-1
tig0028351 exon 51183 51361 51183 ID=Msa1437690-mRNA-1:exon:10811;Parent=Msa1437690-mRNA-1
tig0028351 exon 51951 52035 51951 ID=Msa1437690-mRNA-1:exon:10812;Parent=Msa1437690-mRNA-1
tig0028351 exon 52162 52478 52162 ID=Msa1437690-mRNA-1:exon:10813;Parent=Msa1437690-mRNA-1
tig0028351 exon 53085 53208 53085 ID=Msa1437690-mRNA-1:exon:10814;Parent=Msa1437690-mRNA-1
tig0028351 exon 54103 54195 54103 ID=Msa1437690-mRNA-1:exon:10815;Parent=Msa1437690-mRNA-1
tig0028351 five_prime_UTR 50318 50367 50318 ID=Msa1437690-mRNA-1:five_prime_utr;Parent=Msa1437690-mRNA-1
tig0028351 CDS 50368 50634 50368 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
tig0028351 CDS 51183 51361 51183 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
tig0028351 CDS 51951 52035 51951 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
tig0028351 CDS 52162 52478 52162 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
tig0028351 CDS 53085 53208 53085 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
tig0028351 CDS 54103 54195 54103 ID=Msa1437690-mRNA-1:cds;Parent=Msa1437690-mRNA-1
Gene Sequence

>Msa1437690

ATGCAAACAACATACGGAATGGGTTTCAGTTTAACACAAACCCCTTACACTAATCTTCAACTCCAATTCCACTCTCTATTTTCATCAAAACCGTTTCTCTCTTTGCCATTTCATCAAACATGTCGAGTTCAACCAAAACGCAGCGTTCCGAAGCTTCGCGCTCAATCTGAAAATGGTGCTGCGGTCCTTACTTCTGAGGAGGAGAACAAGCTCGATGCTAGTACTTATGGAAGACAGTACTTCCCTCTTGCTGCTGTTATTGGCCAAGATGCTATTAAAACTGCTCTTTTACTTGGGGCTACTGACCCTAGGATTGGAGGGATTGCTATATCAGGAAGGCGAGGAACTGCTAAAACGATAATGGCACGTGGAATGCATGCAATACTTCCGCCTATTGAAGTAGTAGAAGGTTCCATAGCCAATTCAGATCCCTCGTGCCCAGAAGAGTGGGAAGATGATCTTGCCCAACGCGTGGAATATGATTCTGATGGAAATATTAAAACTCGTATTGTCAAATCTCCCTTTGTTCAGATTCCTCTTGGAGTCACAGAGGACAGACTCATTGGATCAGTTGATGTTGAGGAGTCTGTGAAGACTGGCACGACTGTTTACCAACCAGGCTTACTTGCTGAAGCTCATAGAGGTGTTCTATATGTTGATGAAATTAATCTTTTGGATGAGGGTATCAGTAATTTGCTCCTTAATGTATTGACTGAAGGAGTAAATATTGTTGAAAGAGAGGGAATCAGCTTTAGGCACCCCTGCAGGCCCCTTCTGATTGCTACCTATAACCCTGACGAGGGTTCTGTTCGTGAACATCTGCTAGATCGCATTGCAATTAACTTGAGTGCAGATCTTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCGACAGAATTTCAGGATAACTGTGGCGAAGTATTTAAAATGGTTGATGAGGATACAGACAATGCAAAGACACAGATCATCTTGGCTAGAGAGTATCTCAAGGATGTTACTATTGGCAAAGAACAATTAAAATACCTGGTACTTGAGGCTTTACGAGGTGGTGTCCAG

Protein sequence

>Msa1437690

MQTTYGMGFSLTQTPYTNLQLQFHSLFSSKPFLSLPFHQTCRVQPKRSVPKLRAQSENGAAVLTSEEENKLDASTYGRQYFPLAAVIGQDAIKTALLLGATDPRIGGIAISGRRGTAKTIMARGMHAILPPIEVVEGSIANSDPSCPEEWEDDLAQRVEYDSDGNIKTRIVKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVYQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTEGVNIVEREGISFRHPCRPLLIATYNPDEGSVREHLLDRIAINLSADLPMSFENRVAAVGIATEFQDNCGEVFKMVDEDTDNAKTQIILAREYLKDVTIGKEQLKYLVLEALRGGVQ