AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206280 MtrunA17_Chr4g0055391 91.437 327 19 1 1 318 1 327 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206280 AT5G47090.1 57.377 305 117 2 14 318 19 310 1.30e-107 316
Msa1206280 AT5G47090.2 57.377 305 117 2 14 318 19 310 1.30e-107 316

Find 119 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAGGAGGAGGGCTTATT+TGG 0.186213 8_1:-63237344 Msa1206280:CDS
GCCATTACAAGCAAAATAAA+TGG 0.217003 8_1:-63232937 Msa1206280:three_prime_UTR
TGAGTATGTTGGGAAGTTTC+AGG 0.226641 8_1:-63237251 Msa1206280:CDS
CACTCGATCTCTTGTTGATT+TGG 0.253650 8_1:-63233112 Msa1206280:three_prime_UTR
AAAATAAATGGATGTTGTTT+TGG 0.276543 8_1:-63232925 Msa1206280:three_prime_UTR
ATTACCAATCCACTCGCTTC+TGG 0.278878 8_1:+63237108 None:intergenic
CTATACTGTACTTAAATTAA+CGG 0.317299 8_1:-63233211 Msa1206280:three_prime_UTR
TTTCCCAAGTTGGGGAGAAC+TGG 0.324188 8_1:-63233140 Msa1206280:three_prime_UTR
ATGCAGCAGAAGTTTCTATT+AGG 0.331657 8_1:-63233425 Msa1206280:CDS
TCTCTCTTCTGCATCAATAT+TGG 0.350041 8_1:+63233328 None:intergenic
CTCCAACTCTTCTGAAGTTA+AGG 0.352124 8_1:+63233475 None:intergenic
GGCTTATTTGGATAAGTTGA+TGG 0.354956 8_1:-63237332 Msa1206280:CDS
TACAGTATAGATTTGAAGAT+TGG 0.356169 8_1:+63233224 None:intergenic
GGAAGAAGAGGAAGAGGAGG+AGG 0.356366 8_1:-63237068 Msa1206280:CDS
AGAAGAGGAAGAGGAGGAGG+AGG 0.356540 8_1:-63237065 Msa1206280:CDS
TATCAAATCTAGAGAATCTA+TGG 0.357891 8_1:-63237609 Msa1206280:CDS
AAGATGATTACGAGGTTAAC+TGG 0.361960 8_1:-63237438 Msa1206280:CDS
AGAGGAAGAGGAGGAGGAGG+AGG 0.367681 8_1:-63237062 Msa1206280:CDS
GGAGGAGGATGGCTAGGCCG+GGG 0.377867 8_1:-63237219 Msa1206280:CDS
GATTGGAACCGTAGCGTTCT+AGG 0.381445 8_1:+63237497 None:intergenic
GGGAAGTTTCAGGATAGGTT+TGG 0.382606 8_1:-63237241 Msa1206280:CDS
TGGGAGGAGGATGGCTAGGC+CGG 0.384998 8_1:-63237221 Msa1206280:CDS
TAATTCGATGGAAGTGAGAT+TGG 0.394500 8_1:+63237480 None:intergenic
TTACCAATCCACTCGCTTCT+GGG 0.400810 8_1:+63237109 None:intergenic
GGAAGTTTCAGGATAGGTTT+GGG 0.406087 8_1:-63237240 Msa1206280:CDS
TTCAGGATAGGTTTGGGAGG+AGG 0.415738 8_1:-63237234 Msa1206280:CDS
CCCTCTGCCAATGGTCGTCA+AGG 0.418155 8_1:+63233354 None:intergenic
GTCCCCAGTTCTCCCCAACT+TGG 0.423346 8_1:+63233136 None:intergenic
GAGATTGTGGCTAAGATTAG+AGG 0.429365 8_1:-63237154 Msa1206280:CDS
AGAGGAGGAAGAAGAGGAAG+AGG 0.429775 8_1:-63237074 Msa1206280:CDS
GTGGAAGATGGATTTGCGTT+GGG 0.431930 8_1:+63237549 None:intergenic
GGGAGGAGGATGGCTAGGCC+GGG 0.441186 8_1:-63237220 Msa1206280:CDS
TTGGGAAGGGAGTGTGGCGG+TGG 0.442489 8_1:+63237567 None:intergenic
AGAGGGGAGCAGGAGAGGAT+TGG 0.449394 8_1:-63237136 Msa1206280:CDS
GGTTGGATCCTGCCTCGCTC+TGG 0.454781 8_1:+63233496 None:intergenic
TGATCCAGCCAGAGCGAGGC+AGG 0.455817 8_1:-63233504 Msa1206280:CDS
ATTTGCATTATGAGTATGTT+GGG 0.456022 8_1:-63237261 Msa1206280:CDS
AGTGGAAGATGGATTTGCGT+TGG 0.459799 8_1:+63237548 None:intergenic
CCTCCCATGTCAATATTAAG+AGG 0.462218 8_1:-63233079 Msa1206280:three_prime_UTR
GAGGAGGATGGCTAGGCCGG+GGG 0.464868 8_1:-63237218 Msa1206280:CDS
GGAGGAAGAAGAGGAAGAGG+AGG 0.467961 8_1:-63237071 Msa1206280:CDS
AACCTTAACTTCAGAAGAGT+TGG 0.468520 8_1:-63233477 Msa1206280:CDS
TATTTGGATAAGTTGATGGT+TGG 0.469239 8_1:-63237328 Msa1206280:CDS
GGCTAAGATTAGAGGGGAGC+AGG 0.469678 8_1:-63237146 Msa1206280:CDS
AGATGGATTTGCGTTGGGAA+GGG 0.470800 8_1:+63237554 None:intergenic
AACTCTTCTGAAGTTAAGGT+TGG 0.471512 8_1:+63233479 None:intergenic
AGACATGATGTAACTGATAA+TGG 0.472461 8_1:-63233533 Msa1206280:CDS
CGAAGTGAGCGAAGAAGCGA+AGG 0.474089 8_1:-63237650 Msa1206280:CDS
TTTGAGGAGGTGTGAGGAGG+CGG 0.475716 8_1:-63237176 Msa1206280:CDS
CTCCTCAACTCCTCCGTCGT+CGG 0.476973 8_1:+63237385 None:intergenic
TTGGATAAGTTGATGGTTGG+TGG 0.478972 8_1:-63237325 Msa1206280:CDS
TTCCCAAGTTGGGGAGAACT+GGG 0.480687 8_1:-63233139 Msa1206280:three_prime_UTR
TTGTATCAGCTTAATAGTGC+AGG 0.481703 8_1:-63233286 Msa1206280:three_prime_UTR
AGGCTGTGGTTGCGAAGAAT+AGG 0.481727 8_1:-63237360 Msa1206280:CDS
GTGCCATTGTCACTTACATC+AGG 0.495094 8_1:+63233575 None:intergenic
TATTTGCATTATGAGTATGT+TGG 0.495284 8_1:-63237262 Msa1206280:CDS
AGTGAGAAGAGAGTGGAAGA+TGG 0.496332 8_1:+63237537 None:intergenic
AAGATGGATTTGCGTTGGGA+AGG 0.513028 8_1:+63237553 None:intergenic
AACCGTAGCGTTCTAGGAAG+AGG 0.515964 8_1:+63237503 None:intergenic
GTGTGAGGAGGCGGAGATTG+TGG 0.522176 8_1:-63237167 Msa1206280:CDS
TTCGAATTCGGTTAATTCGA+TGG 0.524106 8_1:+63237468 None:intergenic
ATGAGACCCTTGACGACCAT+TGG 0.525545 8_1:-63233361 Msa1206280:CDS
TTTGCGTTGGGAAGGGAGTG+TGG 0.530414 8_1:+63237561 None:intergenic
ACATCATGTCTCACTCGAGC+TGG 0.535245 8_1:+63233545 None:intergenic
AGATTAGAGGGGAGCAGGAG+AGG 0.536513 8_1:-63237141 Msa1206280:CDS
TAGATTTGAAGATTGGCAAA+CGG 0.539449 8_1:+63233231 None:intergenic
ATGTTGGGAAGTTTCAGGAT+AGG 0.539526 8_1:-63237246 Msa1206280:CDS
CTTAACTTCAGAAGAGTTGG+AGG 0.541692 8_1:-63233474 Msa1206280:CDS
TGTAAGTGAATTGATTCATC+CGG 0.545854 8_1:+63233450 None:intergenic
TTGTCACTTACATCAGGTTG+AGG 0.546551 8_1:+63233581 None:intergenic
TATTGGCCTCCCTCTGCCAA+TGG 0.551435 8_1:+63233345 None:intergenic
GGATAGGTTTGGGAGGAGGA+TGG 0.552430 8_1:-63237230 Msa1206280:CDS
CTTCAGAAGAGTTGGAGGAC+CGG 0.555990 8_1:-63233469 Msa1206280:CDS
AGCGAGTGGATTGGTAATGA+AGG 0.556176 8_1:-63237103 Msa1206280:CDS
TCCCCAGTTCTCCCCAACTT+GGG 0.559849 8_1:+63233137 None:intergenic
GATCTCTTGTTGATTTGGTG+AGG 0.563439 8_1:-63233107 Msa1206280:three_prime_UTR
GGTTTGGGAGGAGGATGGCT+AGG 0.565996 8_1:-63237225 Msa1206280:CDS
TGGTAATGAAGGACTTCAAG+AGG 0.567722 8_1:-63237092 Msa1206280:CDS
CCTCTGCCAATGGTCGTCAA+GGG 0.570477 8_1:+63233355 None:intergenic
GTCCGACGACGGAGGAGTTG+AGG 0.571986 8_1:-63237387 Msa1206280:CDS
GGAGTTGAGGAGGAAGGCTG+TGG 0.573275 8_1:-63237374 Msa1206280:CDS
AAATTTGCATGTGCTATAGC+TGG 0.577477 8_1:+63232869 None:intergenic
AGATTGTGGCTAAGATTAGA+GGG 0.578298 8_1:-63237153 Msa1206280:CDS
CTGTGGTTGCGAAGAATAGG+AGG 0.579748 8_1:-63237357 Msa1206280:CDS
CCCTTGACGACCATTGGCAG+AGG 0.580251 8_1:-63233355 Msa1206280:CDS
ACTTCAAGAGGAGGAAGAAG+AGG 0.587570 8_1:-63237080 Msa1206280:CDS
ACCGTAGCGTTCTAGGAAGA+GGG 0.588216 8_1:+63237504 None:intergenic
TGCACCTCTTAATATTGACA+TGG 0.588716 8_1:+63233075 None:intergenic
CGACGACGGAGGAGTTGAGG+AGG 0.594340 8_1:-63237384 Msa1206280:CDS
TAGCGTTCTAGGAAGAGGGA+TGG 0.596251 8_1:+63237508 None:intergenic
CAAATCAACAAGAGATCGAG+TGG 0.600743 8_1:+63233113 None:intergenic
GTATCAGACCACCTCTCCCC+CGG 0.601397 8_1:+63237202 None:intergenic
TCCCTCTTCCTAGAACGCTA+CGG 0.601725 8_1:-63237505 Msa1206280:CDS
ACTCAGTAGTAACTTGCTGT+TGG 0.603963 8_1:-63233174 Msa1206280:three_prime_UTR
TGGTTGCGAAGAATAGGAGG+AGG 0.610374 8_1:-63237354 Msa1206280:CDS
TGACGACCATTGGCAGAGGG+AGG 0.614328 8_1:-63233351 Msa1206280:CDS
TGTATCAGCTTAATAGTGCA+GGG 0.618168 8_1:-63233285 Msa1206280:three_prime_UTR
CATCTGATCCAGCCAGAGCG+AGG 0.622685 8_1:-63233508 Msa1206280:CDS
CAACCTGATGTAAGTGACAA+TGG 0.623013 8_1:-63233578 Msa1206280:CDS
AGGTTAACTGGCACGTGACG+CGG 0.623803 8_1:-63237426 Msa1206280:CDS
AGCGTTCTAGGAAGAGGGAT+GGG 0.626163 8_1:+63237509 None:intergenic
GGTCGCGAGTGAGAAGAGAG+TGG 0.633188 8_1:+63237530 None:intergenic
CCTTGACGACCATTGGCAGA+GGG 0.641904 8_1:-63233354 Msa1206280:CDS
GTGCCCAGAAGCGAGTGGAT+TGG 0.643717 8_1:-63237112 Msa1206280:CDS
GACGGAGGAGTTGAGGAGGA+AGG 0.645151 8_1:-63237380 Msa1206280:CDS
GCGTTGGGAAGGGAGTGTGG+CGG 0.647521 8_1:+63237564 None:intergenic
GCACCTCTTAATATTGACAT+GGG 0.647641 8_1:+63233076 None:intergenic
AGTTTCAGGATAGGTTTGGG+AGG 0.649952 8_1:-63237237 Msa1206280:CDS
GGAGGCGATGAGAGAACGTG+AGG 0.653428 8_1:-63237287 Msa1206280:CDS
CCTCTTAATATTGACATGGG+AGG 0.662291 8_1:+63233079 None:intergenic
TCCCAAGTTGGGGAGAACTG+GGG 0.670381 8_1:-63233138 Msa1206280:three_prime_UTR
CTTGTTGAGTCCGACGACGG+AGG 0.670780 8_1:-63237395 Msa1206280:CDS
AAGCTTGTTGAGTCCGACGA+CGG 0.671431 8_1:-63237398 Msa1206280:CDS
TTGGTGTGCCCAGAAGCGAG+TGG 0.671616 8_1:-63237117 Msa1206280:CDS
TAATGAAGGACTTCAAGAGG+AGG 0.688131 8_1:-63237089 Msa1206280:CDS
AACCCTAAAAGATGATTACG+AGG 0.694518 8_1:-63237446 Msa1206280:CDS
GGTTGCGAAGAATAGGAGGA+GGG 0.704365 8_1:-63237353 Msa1206280:CDS
AAATCAACAAGAGATCGAGT+GGG 0.712006 8_1:+63233114 None:intergenic
GATTGTGGCTAAGATTAGAG+GGG 0.720646 8_1:-63237152 Msa1206280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGTTAAAAATAGCTTA+TGG - chr8_1:63234059-63234078 Msa1206280:intron 15.0%
!!! CAGAATTTATATAATTTGTT+AGG - chr8_1:63234285-63234304 Msa1206280:intron 15.0%
!!! AATTTATATAATTTGTTAGG+TGG - chr8_1:63234288-63234307 Msa1206280:intron 15.0%
!! AATATTATAACAACATAGAT+TGG - chr8_1:63234627-63234646 Msa1206280:intron 15.0%
!! ACAATTTGGTTAAAAAAAAT+AGG - chr8_1:63235682-63235701 Msa1206280:intron 15.0%
!! TTGAATGTAATCAAATGTAT+AGG - chr8_1:63233679-63233698 Msa1206280:intron 20.0%
!!! AAGATTTTATTTTTCATGCT+AGG - chr8_1:63233782-63233801 Msa1206280:intron 20.0%
!!! TCTTATTTTGTTGCAAATAA+GGG + chr8_1:63234176-63234195 None:intergenic 20.0%
!!! TTCTTATTTTGTTGCAAATA+AGG + chr8_1:63234177-63234196 None:intergenic 20.0%
!! TTATTTGCAACAAAATAAGA+AGG - chr8_1:63234176-63234195 Msa1206280:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr8_1:63234519-63234538 Msa1206280:intron 20.0%
!! ATAAGAATGAGTAAAACTAA+TGG + chr8_1:63234930-63234949 None:intergenic 20.0%
!!! TTTACACAAACAATTTTGTA+AGG + chr8_1:63235149-63235168 None:intergenic 20.0%
!! AAAATTGTTTGTGTAAACTT+GGG - chr8_1:63235152-63235171 Msa1206280:intron 20.0%
!! TAAATTATGTGGTATTTCTT+TGG - chr8_1:63235480-63235499 Msa1206280:intron 20.0%
!! TTTGGTTAAAAAAAATAGGA+AGG - chr8_1:63235686-63235705 Msa1206280:intron 20.0%
!! TTAAAAAAAATAGGAAGGAT+AGG - chr8_1:63235691-63235710 Msa1206280:intron 20.0%
!!! ACAATTTTACAAATGATCAA+TGG - chr8_1:63235765-63235784 Msa1206280:intron 20.0%
!! ATTATAGGAAGATAAATAGT+AGG - chr8_1:63236289-63236308 Msa1206280:intron 20.0%
!! GTTTGATTAAATAGTAAAAG+AGG - chr8_1:63236452-63236471 Msa1206280:intron 20.0%
!! TATGTTAACAGATTTGAATA+AGG + chr8_1:63236641-63236660 None:intergenic 20.0%
!!! ATTCAAAAACAACATAGTTT+TGG + chr8_1:63236822-63236841 None:intergenic 20.0%
!! CTATACTGTACTTAAATTAA+CGG - chr8_1:63237333-63237352 Msa1206280:CDS 20.0%
!!! AAAATAAATGGATGTTGTTT+TGG - chr8_1:63237619-63237638 Msa1206280:CDS 20.0%
!!! GTTGTTTTGGATTAAATAAA+TGG - chr8_1:63237632-63237651 Msa1206280:CDS 20.0%
! TATCAAATCTAGAGAATCTA+TGG - chr8_1:63232935-63232954 Msa1206280:three_prime_UTR 25.0%
! TATTTGCATTATGAGTATGT+TGG - chr8_1:63233282-63233301 Msa1206280:three_prime_UTR 25.0%
! ATTTGCATTATGAGTATGTT+GGG - chr8_1:63233283-63233302 Msa1206280:three_prime_UTR 25.0%
! GTAACACAAATACATATCAA+AGG + chr8_1:63233734-63233753 None:intergenic 25.0%
!!! ATAGCCATATTTTAACGTAT+AGG - chr8_1:63233839-63233858 Msa1206280:intron 25.0%
!!! TAGCCATATTTTAACGTATA+GGG - chr8_1:63233840-63233859 Msa1206280:intron 25.0%
! AGTCACATATATGTTAATCT+GGG - chr8_1:63234374-63234393 Msa1206280:intron 25.0%
!!! AGAAAATTAAGGCTTTGTTT+GGG + chr8_1:63234853-63234872 None:intergenic 25.0%
! TAATGGAAGATAGAAAGTAA+AGG + chr8_1:63234913-63234932 None:intergenic 25.0%
! CAAAATTGTTTGTGTAAACT+TGG - chr8_1:63235151-63235170 Msa1206280:intron 25.0%
!! AGGTCAACAATATTGATTAA+TGG - chr8_1:63235214-63235233 Msa1206280:intron 25.0%
!! ATCACTCAATTGTTGTATTT+TGG + chr8_1:63235278-63235297 None:intergenic 25.0%
! TAACATCGTGCAAAAATTTA+AGG - chr8_1:63235415-63235434 Msa1206280:intron 25.0%
! AATAGAGTAGTGACTTAAAA+GGG + chr8_1:63235744-63235763 None:intergenic 25.0%
! TATTAGTTAATGAGGTAGTT+AGG + chr8_1:63235834-63235853 None:intergenic 25.0%
! TTAATAGATATAGATGTCAC+TGG - chr8_1:63236387-63236406 Msa1206280:intron 25.0%
! TTAGAAACAAAGAAAACCAT+CGG - chr8_1:63236510-63236529 Msa1206280:intron 25.0%
! TAGATTATTATTCATCAAGC+AGG + chr8_1:63236591-63236610 None:intergenic 25.0%
! ATCATGCAGTATATTCTAAA+TGG + chr8_1:63236681-63236700 None:intergenic 25.0%
!! GTTTAATCTTGTTTCTTACA+AGG - chr8_1:63236740-63236759 Msa1206280:intron 25.0%
!! TTTCTAATCTTTTGAGCTTT+GGG - chr8_1:63236848-63236867 Msa1206280:intron 25.0%
! TACAGTATAGATTTGAAGAT+TGG + chr8_1:63237323-63237342 None:intergenic 25.0%
!! AAACGTAAGTTTACAGTTTT+TGG + chr8_1:63237539-63237558 None:intergenic 25.0%
!!! TCCATTTATTTTGCTTGTAA+TGG + chr8_1:63237611-63237630 None:intergenic 25.0%
!!! ATCTTTTAGGGTTTCGAATT+CGG + chr8_1:63233091-63233110 None:intergenic 30.0%
! AACCTCGTAATCATCTTTTA+GGG + chr8_1:63233103-63233122 None:intergenic 30.0%
! TAACCTCGTAATCATCTTTT+AGG + chr8_1:63233104-63233123 None:intergenic 30.0%
!! TATTTGGATAAGTTGATGGT+TGG - chr8_1:63233216-63233235 Msa1206280:three_prime_UTR 30.0%
! CAAATGTATAGGTGTTATGT+TGG - chr8_1:63233690-63233709 Msa1206280:intron 30.0%
GCTAGGTCAATTATTCATTT+AGG - chr8_1:63233799-63233818 Msa1206280:intron 30.0%
TCTCCCTATACGTTAAAATA+TGG + chr8_1:63233846-63233865 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG + chr8_1:63233924-63233943 None:intergenic 30.0%
TACCTATAAGATGTGTTCAT+AGG - chr8_1:63234029-63234048 Msa1206280:intron 30.0%
CCATAGGCATAAAGATTATT+TGG + chr8_1:63234213-63234232 None:intergenic 30.0%
CCAAATAATCTTTATGCCTA+TGG - chr8_1:63234210-63234229 Msa1206280:intron 30.0%
GCTTAGCTTAAATAGTTGAA+GGG - chr8_1:63234330-63234349 Msa1206280:intron 30.0%
GAGTCACATATATGTTAATC+TGG - chr8_1:63234373-63234392 Msa1206280:intron 30.0%
!! AATTCTCTTAGGCTTTGTTT+GGG - chr8_1:63234462-63234481 Msa1206280:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr8_1:63234698-63234717 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr8_1:63234699-63234718 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr8_1:63234700-63234719 None:intergenic 30.0%
AGGGAACTCAAAAATTGTAT+TGG + chr8_1:63234701-63234720 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr8_1:63234780-63234799 None:intergenic 30.0%
!! GAGAAAATTAAGGCTTTGTT+TGG + chr8_1:63234854-63234873 None:intergenic 30.0%
AACATGAGCAGAGAAAATTA+AGG + chr8_1:63234864-63234883 None:intergenic 30.0%
TAGAAAATAGCCTTTGATCA+TGG - chr8_1:63235039-63235058 Msa1206280:intron 30.0%
AGAAAATAGCCTTTGATCAT+GGG - chr8_1:63235040-63235059 Msa1206280:intron 30.0%
TGACTGAGGATTAAATTATG+TGG - chr8_1:63235469-63235488 Msa1206280:intron 30.0%
ATTATGTGGTATTTCTTTGG+AGG - chr8_1:63235483-63235502 Msa1206280:intron 30.0%
TTATGTGGTATTTCTTTGGA+GGG - chr8_1:63235484-63235503 Msa1206280:intron 30.0%
TAAACAGAATGTGAAGAGTA+AGG - chr8_1:63235508-63235527 Msa1206280:intron 30.0%
ACTTTCATTTGTGGGATTAT+AGG + chr8_1:63235540-63235559 None:intergenic 30.0%
TATAATCCCACAAATGAAAG+TGG - chr8_1:63235539-63235558 Msa1206280:intron 30.0%
GCAGAATAGAAAGAACAATT+TGG - chr8_1:63235668-63235687 Msa1206280:intron 30.0%
ATAGAGTAGTGACTTAAAAG+GGG + chr8_1:63235743-63235762 None:intergenic 30.0%
GAATAGAGTAGTGACTTAAA+AGG + chr8_1:63235745-63235764 None:intergenic 30.0%
AGGACTACTATGTATAGATA+GGG + chr8_1:63235814-63235833 None:intergenic 30.0%
TAGGACTACTATGTATAGAT+AGG + chr8_1:63235815-63235834 None:intergenic 30.0%
AGGGAAGTTATTAGTTAATG+AGG + chr8_1:63235842-63235861 None:intergenic 30.0%
TAGAGTAGTTAAAGTTGCTA+AGG + chr8_1:63235873-63235892 None:intergenic 30.0%
TATTCTACATCCTAACACTA+TGG - chr8_1:63235900-63235919 Msa1206280:intron 30.0%
AAGTAACTATCCATAGTGTT+AGG + chr8_1:63235913-63235932 None:intergenic 30.0%
! ACTGTTTCTCTTGATATAGA+AGG + chr8_1:63236155-63236174 None:intergenic 30.0%
TCTATATCAAGAGAAACAGT+AGG - chr8_1:63236155-63236174 Msa1206280:intron 30.0%
TCACTGGATATAGAATTAGT+TGG - chr8_1:63236403-63236422 Msa1206280:intron 30.0%
CACTGGATATAGAATTAGTT+GGG - chr8_1:63236404-63236423 Msa1206280:intron 30.0%
TAAAAGAGGTTGAACTTAGA+AGG - chr8_1:63236466-63236485 Msa1206280:intron 30.0%
AAAAGAGGTTGAACTTAGAA+GGG - chr8_1:63236467-63236486 Msa1206280:intron 30.0%
TTAACAGATTTGAATAAGGC+AGG + chr8_1:63236637-63236656 None:intergenic 30.0%
TGTAAACAATGAACAGTTTG+AGG - chr8_1:63236792-63236811 Msa1206280:intron 30.0%
GTAAACAATGAACAGTTTGA+GGG - chr8_1:63236793-63236812 Msa1206280:intron 30.0%
! GTTTCTAATCTTTTGAGCTT+TGG - chr8_1:63236847-63236866 Msa1206280:intron 30.0%
! TTCTAATCTTTTGAGCTTTG+GGG - chr8_1:63236849-63236868 Msa1206280:intron 30.0%
TGGTATAACCATATGATTTG+TGG - chr8_1:63236889-63236908 Msa1206280:intron 30.0%
AGACATGATGTAACTGATAA+TGG - chr8_1:63237011-63237030 Msa1206280:intron 30.0%
! TGTAAGTGAATTGATTCATC+CGG + chr8_1:63237097-63237116 None:intergenic 30.0%
TAGATTTGAAGATTGGCAAA+CGG + chr8_1:63237316-63237335 None:intergenic 30.0%
GCCATTACAAGCAAAATAAA+TGG - chr8_1:63237607-63237626 Msa1206280:CDS 30.0%
TAATTCGATGGAAGTGAGAT+TGG + chr8_1:63233067-63233086 None:intergenic 35.0%
TTCGAATTCGGTTAATTCGA+TGG + chr8_1:63233079-63233098 None:intergenic 35.0%
AACCCTAAAAGATGATTACG+AGG - chr8_1:63233098-63233117 Msa1206280:three_prime_UTR 35.0%
AAGATGATTACGAGGTTAAC+TGG - chr8_1:63233106-63233125 Msa1206280:three_prime_UTR 35.0%
! GGCTTATTTGGATAAGTTGA+TGG - chr8_1:63233212-63233231 Msa1206280:three_prime_UTR 35.0%
AGATTGTGGCTAAGATTAGA+GGG - chr8_1:63233391-63233410 Msa1206280:CDS 35.0%
CATGCACTAAACACATTCAT+CGG - chr8_1:63233612-63233631 Msa1206280:intron 35.0%
TTAACGTATAGGGAGAAAAC+AGG - chr8_1:63233850-63233869 Msa1206280:intron 35.0%
ACAGGAAGAGAACAATTCAA+TGG - chr8_1:63233868-63233887 Msa1206280:intron 35.0%
GTTGATCAATTGCTAGACTT+AGG - chr8_1:63233897-63233916 Msa1206280:intron 35.0%
AGCCTATGAACACATCTTAT+AGG + chr8_1:63234034-63234053 None:intergenic 35.0%
TGACATAAACACTTGTGAGA+CGG + chr8_1:63234120-63234139 None:intergenic 35.0%
! TTGCAAATAAGGGCTTGTTT+GGG + chr8_1:63234166-63234185 None:intergenic 35.0%
AAATAATTGCTGCAAGCCAT+AGG + chr8_1:63234229-63234248 None:intergenic 35.0%
! ATTTGTTAGGTGGTTGTAGT+TGG - chr8_1:63234298-63234317 Msa1206280:intron 35.0%
GGCTTAGCTTAAATAGTTGA+AGG - chr8_1:63234329-63234348 Msa1206280:intron 35.0%
TTGAAGGGATAGAACTAGAA+GGG - chr8_1:63234345-63234364 Msa1206280:intron 35.0%
TGACTCAATTAGTGTGAACA+GGG - chr8_1:63234409-63234428 Msa1206280:intron 35.0%
!! GAATTCTCTTAGGCTTTGTT+TGG - chr8_1:63234461-63234480 Msa1206280:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG + chr8_1:63234694-63234713 None:intergenic 35.0%
!!! TTTTTGAGTTCCCTCAAATG+AGG - chr8_1:63234707-63234726 Msa1206280:intron 35.0%
!!! TTTTGAGTTCCCTCAAATGA+GGG - chr8_1:63234708-63234727 Msa1206280:intron 35.0%
AAAAAATCCCCCTCATTTGA+GGG + chr8_1:63234720-63234739 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+AGG + chr8_1:63234721-63234740 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr8_1:63234777-63234796 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr8_1:63234781-63234800 None:intergenic 35.0%
!!! GAGGGTTTTGGAAAAAATGA+AGG + chr8_1:63234809-63234828 None:intergenic 35.0%
CCAAAAAAATTCAGAAGGTC+GGG + chr8_1:63234972-63234991 None:intergenic 35.0%
CCCAAAAAAATTCAGAAGGT+CGG + chr8_1:63234973-63234992 None:intergenic 35.0%
!!! CCGACCTTCTGAATTTTTTT+GGG - chr8_1:63234970-63234989 Msa1206280:intron 35.0%
!!! CGACCTTCTGAATTTTTTTG+GGG - chr8_1:63234971-63234990 Msa1206280:intron 35.0%
!!! GACCTTCTGAATTTTTTTGG+GGG - chr8_1:63234972-63234991 Msa1206280:intron 35.0%
ATCCCCCAAAAAAATTCAGA+AGG + chr8_1:63234977-63234996 None:intergenic 35.0%
!!! CTGAATTTTTTTGGGGGATA+TGG - chr8_1:63234978-63234997 Msa1206280:intron 35.0%
!!! ATTTTTTTGGGGGATATGGA+CGG - chr8_1:63234982-63235001 Msa1206280:intron 35.0%
TGCATGGAATTATGAGTTTG+AGG - chr8_1:63235181-63235200 Msa1206280:intron 35.0%
!! TAGAAAGTGTTTAACCTCCA+GGG + chr8_1:63235248-63235267 None:intergenic 35.0%
!! TTAGAAAGTGTTTAACCTCC+AGG + chr8_1:63235249-63235268 None:intergenic 35.0%
! GTTTGGTTCAATCAACACAT+TGG + chr8_1:63235341-63235360 None:intergenic 35.0%
AGATAGGTTTCAGCTAATCA+TGG + chr8_1:63235363-63235382 None:intergenic 35.0%
! GCAAAAATTTAAGGTCCTAG+TGG - chr8_1:63235424-63235443 Msa1206280:intron 35.0%
! TATGTGGTATTTCTTTGGAG+GGG - chr8_1:63235485-63235504 Msa1206280:intron 35.0%
! AGTAAGCCACTTTCATTTGT+GGG + chr8_1:63235548-63235567 None:intergenic 35.0%
! TAGTAAGCCACTTTCATTTG+TGG + chr8_1:63235549-63235568 None:intergenic 35.0%
TACTAGATTTAGAAGAGCTG+TGG - chr8_1:63235564-63235583 Msa1206280:intron 35.0%
TCAATTTCATGCACTGTGTT+AGG - chr8_1:63235631-63235650 Msa1206280:intron 35.0%
TTCTATTCTGCTCAGTTCTT+GGG + chr8_1:63235659-63235678 None:intergenic 35.0%
TTTCTATTCTGCTCAGTTCT+TGG + chr8_1:63235660-63235679 None:intergenic 35.0%
TAGAGTAGTGACTTAAAAGG+GGG + chr8_1:63235742-63235761 None:intergenic 35.0%
! ATGTATAGATAGGGAGGTTT+TGG + chr8_1:63235805-63235824 None:intergenic 35.0%
ACTACTATGTATAGATAGGG+AGG + chr8_1:63235811-63235830 None:intergenic 35.0%
AGATCAAATGAGTTCTCTTC+AGG + chr8_1:63235969-63235988 None:intergenic 35.0%
AACTCATTTGATCTGTTTCG+TGG - chr8_1:63235975-63235994 Msa1206280:intron 35.0%
!! AGAATGTGAGGCTTTAGATT+GGG + chr8_1:63236011-63236030 None:intergenic 35.0%
!! AAGAATGTGAGGCTTTAGAT+TGG + chr8_1:63236012-63236031 None:intergenic 35.0%
! AATCTAAAGCCTCACATTCT+TGG - chr8_1:63236011-63236030 Msa1206280:intron 35.0%
GTTTCTCTTGATATAGAAGG+TGG + chr8_1:63236152-63236171 None:intergenic 35.0%
TTGTCTAGAAAAAGAGAGCA+TGG - chr8_1:63236191-63236210 Msa1206280:intron 35.0%
AAACAAAGAAAACCATCGGA+AGG - chr8_1:63236514-63236533 Msa1206280:intron 35.0%
ACAAGGAGTAATCAATGACA+TGG - chr8_1:63236757-63236776 Msa1206280:intron 35.0%
GGGAGTTCAAGTATAATGAA+TGG - chr8_1:63236869-63236888 Msa1206280:intron 35.0%
TGATCAGTCCACAAATCATA+TGG + chr8_1:63236900-63236919 None:intergenic 35.0%
!!! TTTCCTTTTTTTTCCGCTAC+CGG - chr8_1:63236928-63236947 Msa1206280:intron 35.0%
!! AACTCTTCTGAAGTTAAGGT+TGG + chr8_1:63237068-63237087 None:intergenic 35.0%
AACCTTAACTTCAGAAGAGT+TGG - chr8_1:63237067-63237086 Msa1206280:CDS 35.0%
ATGCAGCAGAAGTTTCTATT+AGG - chr8_1:63237119-63237138 Msa1206280:CDS 35.0%
TCTCTCTTCTGCATCAATAT+TGG + chr8_1:63237219-63237238 None:intergenic 35.0%
TTGTATCAGCTTAATAGTGC+AGG - chr8_1:63237258-63237277 Msa1206280:CDS 35.0%
TGTATCAGCTTAATAGTGCA+GGG - chr8_1:63237259-63237278 Msa1206280:CDS 35.0%
!!! AGCGTTTTATTTTCCCAAGT+TGG - chr8_1:63237394-63237413 Msa1206280:CDS 35.0%
!!! GCGTTTTATTTTCCCAAGTT+GGG - chr8_1:63237395-63237414 Msa1206280:CDS 35.0%
!!! CGTTTTATTTTCCCAAGTTG+GGG - chr8_1:63237396-63237415 Msa1206280:CDS 35.0%
AAATCAACAAGAGATCGAGT+GGG + chr8_1:63237433-63237452 None:intergenic 35.0%
GCACCTCTTAATATTGACAT+GGG + chr8_1:63237471-63237490 None:intergenic 35.0%
TGCACCTCTTAATATTGACA+TGG + chr8_1:63237472-63237491 None:intergenic 35.0%
!! TTGGATAAGTTGATGGTTGG+TGG - chr8_1:63233219-63233238 Msa1206280:three_prime_UTR 40.0%
!!! GGTTGGTGGAGTGTATTTTT+CGG - chr8_1:63233233-63233252 Msa1206280:three_prime_UTR 40.0%
TGAGTATGTTGGGAAGTTTC+AGG - chr8_1:63233293-63233312 Msa1206280:exon 40.0%
ATGTTGGGAAGTTTCAGGAT+AGG - chr8_1:63233298-63233317 Msa1206280:exon 40.0%
GGAAGTTTCAGGATAGGTTT+GGG - chr8_1:63233304-63233323 Msa1206280:exon 40.0%
GAGATTGTGGCTAAGATTAG+AGG - chr8_1:63233390-63233409 Msa1206280:CDS 40.0%
GATTGTGGCTAAGATTAGAG+GGG - chr8_1:63233392-63233411 Msa1206280:CDS 40.0%
! TGGTAATGAAGGACTTCAAG+AGG - chr8_1:63233452-63233471 Msa1206280:CDS 40.0%
TAATGAAGGACTTCAAGAGG+AGG - chr8_1:63233455-63233474 Msa1206280:CDS 40.0%
TGTTGAAAAAGACGAGACTG+TGG - chr8_1:63233524-63233543 Msa1206280:CDS 40.0%
! GTTGCAAATAAGGGCTTGTT+TGG + chr8_1:63234167-63234186 None:intergenic 40.0%
GTTGAAGGGATAGAACTAGA+AGG - chr8_1:63234344-63234363 Msa1206280:intron 40.0%
GTGACTCAATTAGTGTGAAC+AGG - chr8_1:63234408-63234427 Msa1206280:intron 40.0%
CTAAGAGAATTCTGCTTCCA+AGG + chr8_1:63234453-63234472 None:intergenic 40.0%
CTTGGAAGCAGAATTCTCTT+AGG - chr8_1:63234451-63234470 Msa1206280:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr8_1:63234469-63234488 Msa1206280:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG + chr8_1:63234695-63234714 None:intergenic 40.0%
! TTTGAGTTCCCTCAAATGAG+GGG - chr8_1:63234709-63234728 Msa1206280:intron 40.0%
GGAAAAAATGAAGGAGCAAG+TGG + chr8_1:63234800-63234819 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG + chr8_1:63234846-63234865 None:intergenic 40.0%
!!! CCCGACCTTCTGAATTTTTT+TGG - chr8_1:63234969-63234988 Msa1206280:intron 40.0%
AAGTTCAACTGAATGCCACA+AGG + chr8_1:63235016-63235035 None:intergenic 40.0%
CAATGGTATCCCATGATCAA+AGG + chr8_1:63235052-63235071 None:intergenic 40.0%
! GAGTTGGTCGATTCTATAAG+TGG + chr8_1:63235094-63235113 None:intergenic 40.0%
! TAAACTTGGGTAGTCTTGCA+TGG - chr8_1:63235165-63235184 Msa1206280:intron 40.0%
GATTAATGGTTATTCACCCC+TGG - chr8_1:63235228-63235247 Msa1206280:intron 40.0%
!! AGAAAGTGTTTAACCTCCAG+GGG + chr8_1:63235247-63235266 None:intergenic 40.0%
GGTTTCAGCTAATCATGGTT+TGG + chr8_1:63235358-63235377 None:intergenic 40.0%
!! ATTTAGCTTGGTGTGGAGAT+AGG + chr8_1:63235379-63235398 None:intergenic 40.0%
TAGATTTAGAAGAGCTGTGG+AGG - chr8_1:63235567-63235586 Msa1206280:intron 40.0%
AGTTGCTAAGGAGCAAGTAA+GGG + chr8_1:63235861-63235880 None:intergenic 40.0%
AAGTTGCTAAGGAGCAAGTA+AGG + chr8_1:63235862-63235881 None:intergenic 40.0%
ATCTGTCTTAGTAGTAGGGT+AGG + chr8_1:63236060-63236079 None:intergenic 40.0%
GTGCATCTGTCTTAGTAGTA+GGG + chr8_1:63236064-63236083 None:intergenic 40.0%
TGTGCATCTGTCTTAGTAGT+AGG + chr8_1:63236065-63236084 None:intergenic 40.0%
ACTACTAAGACAGATGCACA+AGG - chr8_1:63236065-63236084 Msa1206280:intron 40.0%
AGAAGATGTACAAGCGAATG+AGG - chr8_1:63236230-63236249 Msa1206280:intron 40.0%
TTGGCAATTGAGAAATCCCT+CGG + chr8_1:63236325-63236344 None:intergenic 40.0%
ATTGCCAAGGTGGAATTTCT+AGG - chr8_1:63236337-63236356 Msa1206280:intron 40.0%
TTGCCAAGGTGGAATTTCTA+GGG - chr8_1:63236338-63236357 Msa1206280:intron 40.0%
! TTGTCACTTACATCAGGTTG+AGG + chr8_1:63236966-63236985 None:intergenic 40.0%
CAACCTGATGTAAGTGACAA+TGG - chr8_1:63236966-63236985 Msa1206280:intron 40.0%
!! CTCCAACTCTTCTGAAGTTA+AGG + chr8_1:63237072-63237091 None:intergenic 40.0%
CTTAACTTCAGAAGAGTTGG+AGG - chr8_1:63237070-63237089 Msa1206280:CDS 40.0%
!! ACTCAGTAGTAACTTGCTGT+TGG - chr8_1:63237370-63237389 Msa1206280:CDS 40.0%
CAAATCAACAAGAGATCGAG+TGG + chr8_1:63237434-63237453 None:intergenic 40.0%
! CACTCGATCTCTTGTTGATT+TGG - chr8_1:63237432-63237451 Msa1206280:CDS 40.0%
!! GATCTCTTGTTGATTTGGTG+AGG - chr8_1:63237437-63237456 Msa1206280:CDS 40.0%
CCTCTTAATATTGACATGGG+AGG + chr8_1:63237468-63237487 None:intergenic 40.0%
CCTCCCATGTCAATATTAAG+AGG - chr8_1:63237465-63237484 Msa1206280:CDS 40.0%
! AGATGGATTTGCGTTGGGAA+GGG + chr8_1:63232993-63233012 None:intergenic 45.0%
! AAGATGGATTTGCGTTGGGA+AGG + chr8_1:63232994-63233013 None:intergenic 45.0%
! GTGGAAGATGGATTTGCGTT+GGG + chr8_1:63232998-63233017 None:intergenic 45.0%
! AGTGGAAGATGGATTTGCGT+TGG + chr8_1:63232999-63233018 None:intergenic 45.0%
AGTGAGAAGAGAGTGGAAGA+TGG + chr8_1:63233010-63233029 None:intergenic 45.0%
GAATAGGAGGAGGGCTTATT+TGG - chr8_1:63233200-63233219 Msa1206280:three_prime_UTR 45.0%
!! TGGTGGAGTGTATTTTTCGG+AGG - chr8_1:63233236-63233255 Msa1206280:three_prime_UTR 45.0%
!! TGGAGTGTATTTTTCGGAGG+AGG - chr8_1:63233239-63233258 Msa1206280:three_prime_UTR 45.0%
GGGAAGTTTCAGGATAGGTT+TGG - chr8_1:63233303-63233322 Msa1206280:exon 45.0%
AGTTTCAGGATAGGTTTGGG+AGG - chr8_1:63233307-63233326 Msa1206280:exon 45.0%
! GGTGGTCTGATACACTTTTG+AGG - chr8_1:63233352-63233371 Msa1206280:CDS 45.0%
!! GGTCTGATACACTTTTGAGG+AGG - chr8_1:63233355-63233374 Msa1206280:CDS 45.0%
!! TACACTTTTGAGGAGGTGTG+AGG - chr8_1:63233362-63233381 Msa1206280:CDS 45.0%
TTACCAATCCACTCGCTTCT+GGG + chr8_1:63233438-63233457 None:intergenic 45.0%
ATTACCAATCCACTCGCTTC+TGG + chr8_1:63233439-63233458 None:intergenic 45.0%
!! AGCGAGTGGATTGGTAATGA+AGG - chr8_1:63233441-63233460 Msa1206280:CDS 45.0%
ACTTCAAGAGGAGGAAGAAG+AGG - chr8_1:63233464-63233483 Msa1206280:CDS 45.0%
TGAAAAAGACGAGACTGTGG+AGG - chr8_1:63233527-63233546 Msa1206280:CDS 45.0%
TTTAGTGCATGTGTCGTGTC+TGG + chr8_1:63233603-63233622 None:intergenic 45.0%
TGCTAGACTTAGGTCCTGTT+TGG - chr8_1:63233907-63233926 Msa1206280:intron 45.0%
TAGGTGGTTGTAGTTGGAAC+AGG - chr8_1:63234304-63234323 Msa1206280:intron 45.0%
TGGTTGTAGTTGGAACAGGA+GGG - chr8_1:63234308-63234327 Msa1206280:intron 45.0%
AAGGGATAGAACTAGAAGGG+AGG - chr8_1:63234348-63234367 Msa1206280:intron 45.0%
AGGGATAGAACTAGAAGGGA+GGG - chr8_1:63234349-63234368 Msa1206280:intron 45.0%
TTCCAAGGCCTTTCACCAAA+GGG + chr8_1:63234438-63234457 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_1:63234473-63234492 Msa1206280:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_1:63234474-63234493 Msa1206280:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG + chr8_1:63234687-63234706 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG + chr8_1:63234688-63234707 None:intergenic 45.0%
TTGAGTTCCCTCAAATGAGG+GGG - chr8_1:63234710-63234729 Msa1206280:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr8_1:63234771-63234790 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr8_1:63234772-63234791 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr8_1:63234474-63234493 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_1:63234473-63234492 None:intergenic 45.0%
CAGAAGGTCGGGTTATATCA+TGG + chr8_1:63234961-63234980 None:intergenic 45.0%
ATCGACCAACTCTACTACTC+TGG - chr8_1:63235102-63235121 Msa1206280:intron 45.0%
ACCAACTCTACTACTCTGGT+TGG - chr8_1:63235106-63235125 Msa1206280:intron 45.0%
ACCAACCAGAGTAGTAGAGT+TGG + chr8_1:63235110-63235129 None:intergenic 45.0%
GAGTTTGAGGACAGTTGAAC+AGG - chr8_1:63235194-63235213 Msa1206280:intron 45.0%
TAATGGTTATTCACCCCTGG+AGG - chr8_1:63235231-63235250 Msa1206280:intron 45.0%
! CAATCAACACATTGGCCTGT+TGG + chr8_1:63235333-63235352 None:intergenic 45.0%
TTGCACGATGTTACCTTCGT+TGG + chr8_1:63235408-63235427 None:intergenic 45.0%
ACCAATGCTCACCAATGCTT+GGG + chr8_1:63235450-63235469 None:intergenic 45.0%
AGAGAGAACTCTCCTCCAAA+GGG - chr8_1:63235714-63235733 Msa1206280:intron 45.0%
ACTTAAAAGGGGGAACCCTT+TGG + chr8_1:63235732-63235751 None:intergenic 45.0%
!!! GGAGGTTTTGGAGTTAGAGA+GGG + chr8_1:63235793-63235812 None:intergenic 45.0%
GCGAAAACTACTTCAAGCAG+GGG + chr8_1:63236038-63236057 None:intergenic 45.0%
GGCGAAAACTACTTCAAGCA+GGG + chr8_1:63236039-63236058 None:intergenic 45.0%
AGGCGAAAACTACTTCAAGC+AGG + chr8_1:63236040-63236059 None:intergenic 45.0%
ACTAAGACAGATGCACAAGG+AGG - chr8_1:63236068-63236087 Msa1206280:intron 45.0%
GTTGCACTACTGTGAAACAG+AGG - chr8_1:63236122-63236141 Msa1206280:intron 45.0%
GAGGGATTTCTCAATTGCCA+AGG - chr8_1:63236324-63236343 Msa1206280:intron 45.0%
GGATTTCTCAATTGCCAAGG+TGG - chr8_1:63236327-63236346 Msa1206280:intron 45.0%
! TGCCAAGGTGGAATTTCTAG+GGG - chr8_1:63236339-63236358 Msa1206280:intron 45.0%
AGAGGTTGAACTTAGAAGGG+AGG - chr8_1:63236470-63236489 Msa1206280:intron 45.0%
GAGGTTGAACTTAGAAGGGA+GGG - chr8_1:63236471-63236490 Msa1206280:intron 45.0%
AGGTTGAACTTAGAAGGGAG+GGG - chr8_1:63236472-63236491 Msa1206280:intron 45.0%
TGTGAGAATTCTCCTTCCGA+TGG + chr8_1:63236529-63236548 None:intergenic 45.0%
! GTGCCATTGTCACTTACATC+AGG + chr8_1:63236972-63236991 None:intergenic 45.0%
!! AGCGTTCTAGGAAGAGGGAT+GGG + chr8_1:63233038-63233057 None:intergenic 50.0%
!! TAGCGTTCTAGGAAGAGGGA+TGG + chr8_1:63233039-63233058 None:intergenic 50.0%
TCCCTCTTCCTAGAACGCTA+CGG - chr8_1:63233039-63233058 Msa1206280:three_prime_UTR 50.0%
!! ACCGTAGCGTTCTAGGAAGA+GGG + chr8_1:63233043-63233062 None:intergenic 50.0%
!! AACCGTAGCGTTCTAGGAAG+AGG + chr8_1:63233044-63233063 None:intergenic 50.0%
GATTGGAACCGTAGCGTTCT+AGG + chr8_1:63233050-63233069 None:intergenic 50.0%
!! AAGCTTGTTGAGTCCGACGA+CGG - chr8_1:63233146-63233165 Msa1206280:three_prime_UTR 50.0%
AGGCTGTGGTTGCGAAGAAT+AGG - chr8_1:63233184-63233203 Msa1206280:three_prime_UTR 50.0%
CTGTGGTTGCGAAGAATAGG+AGG - chr8_1:63233187-63233206 Msa1206280:three_prime_UTR 50.0%
TGGTTGCGAAGAATAGGAGG+AGG - chr8_1:63233190-63233209 Msa1206280:three_prime_UTR 50.0%
GGTTGCGAAGAATAGGAGGA+GGG - chr8_1:63233191-63233210 Msa1206280:three_prime_UTR 50.0%
TTCAGGATAGGTTTGGGAGG+AGG - chr8_1:63233310-63233329 Msa1206280:CDS 50.0%
!! ACTTTTGAGGAGGTGTGAGG+AGG - chr8_1:63233365-63233384 Msa1206280:CDS 50.0%
AGAGGAGGAAGAAGAGGAAG+AGG - chr8_1:63233470-63233489 Msa1206280:CDS 50.0%
GTGGTTGTAGTTGGAACAGG+AGG - chr8_1:63234307-63234326 Msa1206280:intron 50.0%
GTGTGAACAGGGAAACCCTT+TGG - chr8_1:63234420-63234439 Msa1206280:intron 50.0%
CAGGGAAACCCTTTGGTGAA+AGG - chr8_1:63234427-63234446 Msa1206280:intron 50.0%
AACCCTTTGGTGAAAGGCCT+TGG - chr8_1:63234433-63234452 Msa1206280:intron 50.0%
CTTCCAAGGCCTTTCACCAA+AGG + chr8_1:63234439-63234458 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_1:63234472-63234491 Msa1206280:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr8_1:63234479-63234498 Msa1206280:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG + chr8_1:63234686-63234705 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_1:63234472-63234491 None:intergenic 50.0%
TGGACGGAGTTCAAACCTTG+TGG - chr8_1:63234998-63235017 Msa1206280:intron 50.0%
ATTGCAGTGAACCCACCAAC+AGG - chr8_1:63235315-63235334 Msa1206280:intron 50.0%
! CAACACATTGGCCTGTTGGT+GGG + chr8_1:63235329-63235348 None:intergenic 50.0%
! TCAACACATTGGCCTGTTGG+TGG + chr8_1:63235330-63235349 None:intergenic 50.0%
!! GAGCTGGATTTAGCTTGGTG+TGG + chr8_1:63235386-63235405 None:intergenic 50.0%
CGTTGGAGCTGGATTTAGCT+TGG + chr8_1:63235391-63235410 None:intergenic 50.0%
GCTAAATCCAGCTCCAACGA+AGG - chr8_1:63235392-63235411 Msa1206280:intron 50.0%
GATGTTACCTTCGTTGGAGC+TGG + chr8_1:63235402-63235421 None:intergenic 50.0%
CACCAATGCTCACCAATGCT+TGG + chr8_1:63235451-63235470 None:intergenic 50.0%
!! TTGGTGAGCATTGGTGACTG+AGG - chr8_1:63235455-63235474 Msa1206280:intron 50.0%
GAGAGAGAACTCTCCTCCAA+AGG - chr8_1:63235713-63235732 Msa1206280:intron 50.0%
TAAAAGGGGGAACCCTTTGG+AGG + chr8_1:63235729-63235748 None:intergenic 50.0%
!!! GGGAGGTTTTGGAGTTAGAG+AGG + chr8_1:63235794-63235813 None:intergenic 50.0%
!! TGAGGCTTTAGATTGGGCTG+GGG + chr8_1:63236005-63236024 None:intergenic 50.0%
!! GTGAGGCTTTAGATTGGGCT+GGG + chr8_1:63236006-63236025 None:intergenic 50.0%
!! TGTGAGGCTTTAGATTGGGC+TGG + chr8_1:63236007-63236026 None:intergenic 50.0%
ATAATGCCTCTTCTGCCCCT+CGG + chr8_1:63236274-63236293 None:intergenic 50.0%
!! AGGGGCAGAAGAGGCATTAT+AGG - chr8_1:63236274-63236293 Msa1206280:intron 50.0%
TAGTAGGAATCCTGATGCCG+AGG - chr8_1:63236305-63236324 Msa1206280:intron 50.0%
AGTAGGAATCCTGATGCCGA+GGG - chr8_1:63236306-63236325 Msa1206280:intron 50.0%
TTGAGAAATCCCTCGGCATC+AGG + chr8_1:63236318-63236337 None:intergenic 50.0%
GTCCCCTAGAAATTCCACCT+TGG + chr8_1:63236344-63236363 None:intergenic 50.0%
GGTTGAACTTAGAAGGGAGG+GGG - chr8_1:63236473-63236492 Msa1206280:intron 50.0%
!! CTGCCGGTAGCGGAAAAAAA+AGG + chr8_1:63236934-63236953 None:intergenic 50.0%
ACATCATGTCTCACTCGAGC+TGG + chr8_1:63237002-63237021 None:intergenic 50.0%
CTTCAGAAGAGTTGGAGGAC+CGG - chr8_1:63237075-63237094 Msa1206280:CDS 50.0%
ATGAGACCCTTGACGACCAT+TGG - chr8_1:63237183-63237202 Msa1206280:CDS 50.0%
! TTTCCCAAGTTGGGGAGAAC+TGG - chr8_1:63237404-63237423 Msa1206280:CDS 50.0%
! TTCCCAAGTTGGGGAGAACT+GGG - chr8_1:63237405-63237424 Msa1206280:CDS 50.0%
CGAAGTGAGCGAAGAAGCGA+AGG - chr8_1:63232894-63232913 Msa1206280:three_prime_UTR 55.0%
TTTGCGTTGGGAAGGGAGTG+TGG + chr8_1:63232986-63233005 None:intergenic 55.0%
AGGTTAACTGGCACGTGACG+CGG - chr8_1:63233118-63233137 Msa1206280:three_prime_UTR 55.0%
GGATAGGTTTGGGAGGAGGA+TGG - chr8_1:63233314-63233333 Msa1206280:CDS 55.0%
! TTTGAGGAGGTGTGAGGAGG+CGG - chr8_1:63233368-63233387 Msa1206280:CDS 55.0%
GGCTAAGATTAGAGGGGAGC+AGG - chr8_1:63233398-63233417 Msa1206280:CDS 55.0%
AGATTAGAGGGGAGCAGGAG+AGG - chr8_1:63233403-63233422 Msa1206280:CDS 55.0%
GGAGGAAGAAGAGGAAGAGG+AGG - chr8_1:63233473-63233492 Msa1206280:CDS 55.0%
GGAAGAAGAGGAAGAGGAGG+AGG - chr8_1:63233476-63233495 Msa1206280:CDS 55.0%
AGAAGAGGAAGAGGAGGAGG+AGG - chr8_1:63233479-63233498 Msa1206280:CDS 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr8_1:63234478-63234497 Msa1206280:intron 55.0%
!!! GGTTTTGGGGGGGTTATGGA+GGG + chr8_1:63234673-63234692 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG + chr8_1:63234684-63234703 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG + chr8_1:63234685-63234704 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr8_1:63234765-63234784 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr8_1:63234836-63234855 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr8_1:63234478-63234497 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr8_1:63234477-63234496 None:intergenic 55.0%
CGACTCTTGCTCTCAGGCAA+TGG + chr8_1:63235069-63235088 None:intergenic 55.0%
TCACCAATGCTTGGGCCACT+AGG + chr8_1:63235442-63235461 None:intergenic 55.0%
!! GCCCAAGCATTGGTGAGCAT+TGG - chr8_1:63235446-63235465 Msa1206280:intron 55.0%
AGCAGGGGTCCAAGAATGTG+AGG + chr8_1:63236023-63236042 None:intergenic 55.0%
ACAGAGAGACTGTCCAACCG+AGG - chr8_1:63236254-63236273 Msa1206280:intron 55.0%
CAGAGAGACTGTCCAACCGA+GGG - chr8_1:63236255-63236274 Msa1206280:intron 55.0%
AGAGAGACTGTCCAACCGAG+GGG - chr8_1:63236256-63236275 Msa1206280:intron 55.0%
GTTGAGGTGTGTGTCTCTGC+CGG + chr8_1:63236950-63236969 None:intergenic 55.0%
CCTCTGCCAATGGTCGTCAA+GGG + chr8_1:63237192-63237211 None:intergenic 55.0%
CCTTGACGACCATTGGCAGA+GGG - chr8_1:63237190-63237209 Msa1206280:CDS 55.0%
! TATTGGCCTCCCTCTGCCAA+TGG + chr8_1:63237202-63237221 None:intergenic 55.0%
! TCCCAAGTTGGGGAGAACTG+GGG - chr8_1:63237406-63237425 Msa1206280:CDS 55.0%
TCCCCAGTTCTCCCCAACTT+GGG + chr8_1:63237410-63237429 None:intergenic 55.0%
GGTCGCGAGTGAGAAGAGAG+TGG + chr8_1:63233017-63233036 None:intergenic 60.0%
CTTGTTGAGTCCGACGACGG+AGG - chr8_1:63233149-63233168 Msa1206280:three_prime_UTR 60.0%
CTCCTCAACTCCTCCGTCGT+CGG + chr8_1:63233162-63233181 None:intergenic 60.0%
GACGGAGGAGTTGAGGAGGA+AGG - chr8_1:63233164-63233183 Msa1206280:three_prime_UTR 60.0%
GGAGTTGAGGAGGAAGGCTG+TGG - chr8_1:63233170-63233189 Msa1206280:three_prime_UTR 60.0%
GGAGGCGATGAGAGAACGTG+AGG - chr8_1:63233257-63233276 Msa1206280:three_prime_UTR 60.0%
GGTTTGGGAGGAGGATGGCT+AGG - chr8_1:63233319-63233338 Msa1206280:CDS 60.0%
GTATCAGACCACCTCTCCCC+CGG + chr8_1:63233345-63233364 None:intergenic 60.0%
GTGTGAGGAGGCGGAGATTG+TGG - chr8_1:63233377-63233396 Msa1206280:CDS 60.0%
AGAGGGGAGCAGGAGAGGAT+TGG - chr8_1:63233408-63233427 Msa1206280:CDS 60.0%
TTGGTGTGCCCAGAAGCGAG+TGG - chr8_1:63233427-63233446 Msa1206280:CDS 60.0%
GTGCCCAGAAGCGAGTGGAT+TGG - chr8_1:63233432-63233451 Msa1206280:CDS 60.0%
AGAGGAAGAGGAGGAGGAGG+AGG - chr8_1:63233482-63233501 Msa1206280:CDS 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr8_1:63234483-63234502 Msa1206280:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr8_1:63234484-63234503 Msa1206280:intron 60.0%
!!! GGGTTTTGGGGGGGTTATGG+AGG + chr8_1:63234674-63234693 None:intergenic 60.0%
!!! GGAGGGTTTTGGGGGGGTTA+TGG + chr8_1:63234677-63234696 None:intergenic 60.0%
!!! ATTGGGGGAGGGTTTTGGGG+GGG + chr8_1:63234683-63234702 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr8_1:63234762-63234781 None:intergenic 60.0%
GTGGCTCGACTCTTGCTCTC+AGG + chr8_1:63235075-63235094 None:intergenic 60.0%
GGTCCTAGTGGCCCAAGCAT+TGG - chr8_1:63235436-63235455 Msa1206280:intron 60.0%
GTGTGTGTCTCTGCCGGTAG+CGG + chr8_1:63236944-63236963 None:intergenic 60.0%
CATCTGATCCAGCCAGAGCG+AGG - chr8_1:63237036-63237055 Msa1206280:intron 60.0%
CCCTTGACGACCATTGGCAG+AGG - chr8_1:63237189-63237208 Msa1206280:CDS 60.0%
CCCTCTGCCAATGGTCGTCA+AGG + chr8_1:63237193-63237212 None:intergenic 60.0%
TGACGACCATTGGCAGAGGG+AGG - chr8_1:63237193-63237212 Msa1206280:CDS 60.0%
GTCCCCAGTTCTCCCCAACT+TGG + chr8_1:63237411-63237430 None:intergenic 60.0%
!! GCGGTGGATTGTTGAGCGCG+TGG + chr8_1:63232964-63232983 None:intergenic 65.0%
! TTGGGAAGGGAGTGTGGCGG+TGG + chr8_1:63232980-63232999 None:intergenic 65.0%
! GCGTTGGGAAGGGAGTGTGG+CGG + chr8_1:63232983-63233002 None:intergenic 65.0%
GTCCGACGACGGAGGAGTTG+AGG - chr8_1:63233157-63233176 Msa1206280:three_prime_UTR 65.0%
CGACGACGGAGGAGTTGAGG+AGG - chr8_1:63233160-63233179 Msa1206280:three_prime_UTR 65.0%
TGGGAGGAGGATGGCTAGGC+CGG - chr8_1:63233323-63233342 Msa1206280:CDS 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr8_1:63234482-63234501 Msa1206280:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr8_1:63234487-63234506 Msa1206280:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr8_1:63234488-63234507 Msa1206280:intron 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG - chr8_1:63234495-63234514 Msa1206280:intron 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG - chr8_1:63234496-63234515 Msa1206280:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG - chr8_1:63234497-63234516 Msa1206280:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG + chr8_1:63234831-63234850 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr8_1:63234832-63234851 None:intergenic 65.0%
GTCCAACCGAGGGGCAGAAG+AGG - chr8_1:63236265-63236284 Msa1206280:intron 65.0%
TGCCTCTTCTGCCCCTCGGT+TGG + chr8_1:63236270-63236289 None:intergenic 65.0%
TGATCCAGCCAGAGCGAGGC+AGG - chr8_1:63237040-63237059 Msa1206280:intron 65.0%
GGTTGGATCCTGCCTCGCTC+TGG + chr8_1:63237051-63237070 None:intergenic 65.0%
GGGAGGAGGATGGCTAGGCC+GGG - chr8_1:63233324-63233343 Msa1206280:CDS 70.0%
GGAGGAGGATGGCTAGGCCG+GGG - chr8_1:63233325-63233344 Msa1206280:CDS 70.0%
GAGGAGGATGGCTAGGCCGG+GGG - chr8_1:63233326-63233345 Msa1206280:CDS 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr8_1:63234494-63234513 Msa1206280:intron 70.0%
!! GAGGGGAGGGCTTTGGGGGT+TGG - chr8_1:63234501-63234520 Msa1206280:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG + chr8_1:63234821-63234840 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG + chr8_1:63234827-63234846 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG + chr8_1:63234828-63234847 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr8_1:63234833-63234852 None:intergenic 70.0%
GGATCCTGCCTCGCTCTGGC+TGG + chr8_1:63237047-63237066 None:intergenic 70.0%
GGATGGCTAGGCCGGGGGAG+AGG - chr8_1:63233331-63233350 Msa1206280:CDS 75.0%
TGGCTAGGCCGGGGGAGAGG+TGG - chr8_1:63233334-63233353 Msa1206280:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63232871 63237695 63232871 ID=Msa1206280;Name=Msa1206280
chr8_1 mRNA 63232871 63237695 63232871 ID=Msa1206280-mRNA-1;Parent=Msa1206280;Name=Msa1206280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|0|1|2|439|318
chr8_1 exon 63232871 63233612 63232871 ID=Msa1206280-mRNA-1:exon:20472;Parent=Msa1206280-mRNA-1
chr8_1 exon 63237042 63237695 63237042 ID=Msa1206280-mRNA-1:exon:20471;Parent=Msa1206280-mRNA-1
chr8_1 CDS 63237042 63237695 63237042 ID=Msa1206280-mRNA-1:cds;Parent=Msa1206280-mRNA-1
chr8_1 CDS 63233310 63233612 63233310 ID=Msa1206280-mRNA-1:cds;Parent=Msa1206280-mRNA-1
chr8_1 three_prime_UTR 63232871 63233309 63232871 ID=Msa1206280-mRNA-1:three_prime_utr;Parent=Msa1206280-mRNA-1
Gene Sequence

>Msa1206280

ATGGAAGTGAAGCAGAAGAAAAACGAAGTGAGCGAAGAAGCGAAGGAGAAAATCTCAGAAAGACTATCAAATCTAGAGAATCTATGGTTTCCACGCGCTCAACAATCCACCGCCACACTCCCTTCCCAACGCAAATCCATCTTCCACTCTCTTCTCACTCGCGACCCATCCCTCTTCCTAGAACGCTACGGTTCCAATCTCACTTCCATCGAATTAACCGAATTCGAAACCCTAAAAGATGATTACGAGGTTAACTGGCACGTGACGCGGTTGCAAAGCTTGTTGAGTCCGACGACGGAGGAGTTGAGGAGGAAGGCTGTGGTTGCGAAGAATAGGAGGAGGGCTTATTTGGATAAGTTGATGGTTGGTGGAGTGTATTTTTCGGAGGAGGCGATGAGAGAACGTGAGGCGTATTTGCATTATGAGTATGTTGGGAAGTTTCAGGATAGGTTTGGGAGGAGGATGGCTAGGCCGGGGGAGAGGTGGTCTGATACACTTTTGAGGAGGTGTGAGGAGGCGGAGATTGTGGCTAAGATTAGAGGGGAGCAGGAGAGGATTGGTGTGCCCAGAAGCGAGTGGATTGGTAATGAAGGACTTCAAGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGATAGACACACACCTCAACCTGATGTAAGTGACAATGGCACATCTGATCCAGCTCGAGTGAGACATGATGTAACTGATAATGGCACATCTGATCCAGCCAGAGCGAGGCAGGATCCAACCTTAACTTCAGAAGAGTTGGAGGACCGGATGAATCAATTCACTTACATCATGCAGCAGAAGTTTCTATTAGGAGAAGATCACGAACATGTAGATTATGCTAAAATAGATAATGATGAGACCCTTGACGACCATTGGCAGAGGGAGGCCAATATTGATGCAGAAGAGAGATATTTTGCTGATGATTAA
Protein sequence

>Msa1206280

MEVKQKKNEVSEEAKEKISERLSNLENLWFPRAQQSTATLPSQRKSIFHSLLTRDPSLFLERYGSNLTSIELTEFETLKDDYEVNWHVTRLQSLLSPTTEELRRKAVVAKNRRRAYLDKLMVGGVYFSEEAMREREAYLHYEYVGKFQDRFGRRMARPGERWSDTLLRRCEEAEIVAKIRGEQERIGVPRSEWIGNEGLQEEEEEEEEEEEEEEEEEDRHTPQPDVSDNGTSDPARVRHDVTDNGTSDPARARQDPTLTSEELEDRMNQFTYIMQQKFLLGEDHEHVDYAKIDNDETLDDHWQREANIDAEERYFADD*