Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064380 | XP_013466989.1 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 3.04e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064380 | G7ZY98 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 1.45e-49 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0064380 | 0.872218 | 3.765140e-67 | -8.615850e-47 |
| Msa0015300 | Msa0064380 | 0.826747 | 2.288963e-54 | -8.615850e-47 |
| Msa0046740 | Msa0064380 | 0.819163 | 1.341344e-52 | -8.615850e-47 |
| Msa0057140 | Msa0064380 | 0.808609 | 2.847194e-50 | -8.615850e-47 |
| Msa0064350 | Msa0064380 | 0.958888 | 7.701417e-117 | -8.615850e-47 |
| Msa0064380 | Msa0082280 | 0.869616 | 2.709506e-66 | -8.615850e-47 |
| Msa0064380 | Msa0086130 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0064380 | Msa0101690 | 0.825463 | 4.623526e-54 | -8.615850e-47 |
| Msa0064380 | Msa0115990 | 0.815354 | 9.653231e-52 | -8.615850e-47 |
| Msa0064380 | Msa0123560 | 0.821753 | 3.414767e-53 | -8.615850e-47 |
| Msa0064380 | Msa0143430 | 0.806614 | 7.551130e-50 | -8.615850e-47 |
| Msa0064380 | Msa0149190 | 0.817690 | 2.893586e-52 | -8.615850e-47 |
| Msa0064380 | Msa0155430 | 0.846403 | 2.220331e-59 | -8.615850e-47 |
| Msa0064380 | Msa0174770 | 0.847865 | 8.822274e-60 | -8.615850e-47 |
| Msa0064380 | Msa0181610 | 0.800134 | 1.661881e-48 | -8.615850e-47 |
| Msa0064380 | Msa0191050 | 0.866501 | 2.722160e-65 | -8.615850e-47 |
| Msa0064380 | Msa0199690 | 0.827992 | 1.151207e-54 | -8.615850e-47 |
| Msa0064380 | Msa0199880 | 0.813359 | 2.663667e-51 | -8.615850e-47 |
| Msa0064380 | Msa0211840 | 0.833030 | 6.738953e-56 | -8.615850e-47 |
| Msa0064380 | Msa0233350 | 0.856635 | 2.816209e-62 | -8.615850e-47 |
| Msa0064380 | Msa0241780 | 0.806401 | 8.373648e-50 | -8.615850e-47 |
| Msa0064380 | Msa0267970 | 0.825802 | 3.842890e-54 | -8.615850e-47 |
| Msa0064380 | Msa0304590 | 0.802406 | 5.695047e-49 | -8.615850e-47 |
| Msa0064380 | Msa0311700 | 0.829912 | 3.947895e-55 | -8.615850e-47 |
| Msa0064380 | Msa0314720 | 0.831939 | 1.255799e-55 | -8.615850e-47 |
| Msa0064380 | Msa0315170 | 0.825682 | 4.102437e-54 | -8.615850e-47 |
| Msa0064380 | Msa0322890 | 0.810202 | 1.295800e-50 | -8.615850e-47 |
| Msa0064380 | Msa0346430 | 0.817020 | 4.095071e-52 | -8.615850e-47 |
| Msa0064380 | Msa0355270 | 0.816638 | 4.987553e-52 | -8.615850e-47 |
| Msa0064380 | Msa0385250 | 0.803764 | 2.983311e-49 | -8.615850e-47 |
| Msa0064380 | Msa0387730 | 0.800792 | 1.220680e-48 | -8.615850e-47 |
| Msa0064380 | Msa0390030 | 0.803619 | 3.197117e-49 | -8.615850e-47 |
| Msa0064380 | Msa0391690 | 0.813948 | 1.976500e-51 | -8.615850e-47 |
| Msa0064380 | Msa0394400 | 0.805301 | 1.426143e-49 | -8.615850e-47 |
| Msa0064380 | Msa0402330 | 0.826243 | 3.019241e-54 | -8.615850e-47 |
| Msa0064380 | Msa0425220 | 0.809353 | 1.972850e-50 | -8.615850e-47 |
| Msa0064380 | Msa0444350 | 0.807500 | 4.903477e-50 | -8.615850e-47 |
| Msa0064380 | Msa0481480 | 0.862773 | 3.995364e-64 | -8.615850e-47 |
| Msa0064380 | Msa0508630 | 0.803005 | 4.285869e-49 | -8.615850e-47 |
| Msa0064380 | Msa0521050 | 0.834372 | 3.113363e-56 | -8.615850e-47 |
| Msa0064380 | Msa0552810 | 0.871724 | 5.494933e-67 | -8.615850e-47 |
| Msa0064380 | Msa0566700 | 0.827760 | 1.309183e-54 | -8.615850e-47 |
| Msa0064380 | Msa0573220 | 0.804867 | 1.757489e-49 | -8.615850e-47 |
| Msa0064380 | Msa0581070 | 0.833812 | 4.301589e-56 | -8.615850e-47 |
| Msa0064380 | Msa0585960 | 0.818254 | 2.157516e-52 | -8.615850e-47 |
| Msa0064380 | Msa0622960 | 0.804513 | 2.083513e-49 | -8.615850e-47 |
| Msa0064380 | Msa0623700 | 0.813176 | 2.922307e-51 | -8.615850e-47 |
| Msa0064380 | Msa0626010 | 0.801193 | 1.010576e-48 | -8.615850e-47 |
| Msa0064380 | Msa0644860 | 0.803652 | 3.147492e-49 | -8.615850e-47 |
| Msa0064380 | Msa0651050 | 0.830488 | 2.854487e-55 | -8.615850e-47 |
| Msa0064380 | Msa0663900 | 0.836256 | 1.040846e-56 | -8.615850e-47 |
| Msa0064380 | Msa0680240 | 0.818870 | 1.564142e-52 | -8.615850e-47 |
| Msa0064380 | Msa0687630 | 0.848310 | 6.650738e-60 | -8.615850e-47 |
| Msa0064380 | Msa0692840 | 0.853403 | 2.445515e-61 | -8.615850e-47 |
| Msa0064380 | Msa0692940 | 0.831720 | 1.422332e-55 | -8.615850e-47 |
| Msa0064380 | Msa0713790 | 0.806707 | 7.216603e-50 | -8.615850e-47 |
| Msa0064380 | Msa0713820 | 0.835488 | 1.629410e-56 | -8.615850e-47 |
| Msa0064380 | Msa0756060 | 0.813422 | 2.580997e-51 | -8.615850e-47 |
| Msa0064380 | Msa0784200 | 0.804228 | 2.389378e-49 | -8.615850e-47 |
| Msa0064380 | Msa0797120 | 0.816916 | 4.321452e-52 | -8.615850e-47 |
| Msa0064380 | Msa0797750 | 0.812018 | 5.234309e-51 | -8.615850e-47 |
| Msa0064380 | Msa0818310 | 0.817587 | 3.052982e-52 | -8.615850e-47 |
| Msa0064380 | Msa0835280 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
| Msa0064380 | Msa0837660 | 0.827441 | 1.562248e-54 | -8.615850e-47 |
| Msa0064380 | Msa0858770 | 0.813074 | 3.076859e-51 | -8.615850e-47 |
| Msa0064380 | Msa0881460 | 0.802646 | 5.083523e-49 | -8.615850e-47 |
| Msa0064380 | Msa0925440 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa0064380 | Msa0967370 | 0.831733 | 1.412196e-55 | -8.615850e-47 |
| Msa0064380 | Msa1078270 | 0.846700 | 1.841950e-59 | -8.615850e-47 |
| Msa0064380 | Msa1081990 | 0.804684 | 1.919348e-49 | -8.615850e-47 |
| Msa0064380 | Msa1083150 | 0.812262 | 4.631716e-51 | -8.615850e-47 |
| Msa0064380 | Msa1123500 | 0.839734 | 1.327143e-57 | -8.615850e-47 |
| Msa0064380 | Msa1126510 | 0.825415 | 4.747174e-54 | -8.615850e-47 |
| Msa0064380 | Msa1126770 | 0.848221 | 7.036146e-60 | -8.615850e-47 |
| Msa0064380 | Msa1127890 | 0.833656 | 4.706021e-56 | -8.615850e-47 |
| Msa0064380 | Msa1134110 | 0.845427 | 4.089475e-59 | -8.615850e-47 |
| Msa0064380 | Msa1165870 | 0.848493 | 5.919240e-60 | -8.615850e-47 |
| Msa0064380 | Msa1166860 | 0.815764 | 7.823248e-52 | -8.615850e-47 |
| Msa0064380 | Msa1169770 | 0.844696 | 6.441370e-59 | -8.615850e-47 |
| Msa0064380 | Msa1184370 | 0.825279 | 5.111866e-54 | -8.615850e-47 |
| Msa0064380 | Msa1206280 | 0.803015 | 4.265362e-49 | -8.615850e-47 |
| Msa0064380 | Msa1210810 | 0.833078 | 6.556706e-56 | -8.615850e-47 |
| Msa0064380 | Msa1227690 | 0.802867 | 4.575166e-49 | -8.615850e-47 |
| Msa0064380 | Msa1239910 | 0.856307 | 3.514173e-62 | -8.615850e-47 |
| Msa0064380 | Msa1255040 | -0.802269 | 6.078103e-49 | -8.615850e-47 |
| Msa0064380 | Msa1256470 | 0.814162 | 1.772796e-51 | -8.615850e-47 |
| Msa0064380 | Msa1269300 | 0.805075 | 1.590167e-49 | -8.615850e-47 |
| Msa0064380 | Msa1275540 | 0.811211 | 7.841227e-51 | -8.615850e-47 |
| Msa0064380 | Msa1283170 | 0.832746 | 7.930065e-56 | -8.615850e-47 |
| Msa0064380 | Msa1295490 | -0.809637 | 1.714959e-50 | -8.615850e-47 |
| Msa0064380 | Msa1304820 | 0.868064 | 8.615299e-66 | -8.615850e-47 |
| Msa0064380 | Msa1307950 | 0.844732 | 6.301969e-59 | -8.615850e-47 |
| Msa0064380 | Msa1320390 | 0.811793 | 5.860842e-51 | -8.615850e-47 |
| Msa0064380 | Msa1340020 | 0.806296 | 8.814801e-50 | -8.615850e-47 |
| Msa0064380 | Msa1345450 | 0.827552 | 1.469264e-54 | -8.615850e-47 |
| Msa0064380 | Msa1361100 | 0.824389 | 8.287618e-54 | -8.615850e-47 |
| Msa0064380 | Msa1364910 | 0.842748 | 2.139495e-58 | -8.615850e-47 |
| Msa0064380 | Msa1365150 | 0.819842 | 9.393140e-53 | -8.615850e-47 |
| Msa0064380 | Msa1367880 | 0.827342 | 1.649163e-54 | -8.615850e-47 |
| Msa0064380 | Msa1370860 | 0.862841 | 3.806989e-64 | -8.615850e-47 |
| Msa0064380 | Msa1392200 | 0.802625 | 5.132415e-49 | -8.615850e-47 |
| Msa0064380 | Msa1397810 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0064380 | Msa1404190 | 0.842239 | 2.919375e-58 | -8.615850e-47 |
| Msa0064380 | Msa1435750 | 0.812513 | 4.081546e-51 | -8.615850e-47 |
| Msa0064380 | Msa1437260 | 0.800674 | 1.289893e-48 | -8.615850e-47 |
| Msa0064380 | Msa1442850 | 0.818533 | 1.865646e-52 | -8.615850e-47 |
| Msa0064380 | Msa1443780 | 0.823143 | 1.622997e-53 | -8.615850e-47 |
| Msa0064380 | Msa1450280 | 0.803183 | 3.935924e-49 | -8.615850e-47 |
| Msa0064380 | Msa1460630 | 0.813658 | 2.289338e-51 | -8.615850e-47 |
| Msa0064380 | Msa1461280 | 0.811284 | 7.561157e-51 | -8.615850e-47 |
| Msa0064380 | Msa1465080 | 0.851845 | 6.805644e-61 | -8.615850e-47 |
| Msa0064380 | Msa1465660 | 0.809865 | 1.531876e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064380 | MtrunA17_Chr1g0166111 | 100.000 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 2.79e-53 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064380 | AT4G14615.1 | 66.667 | 75 | 24 | 1 | 1 | 75 | 1 | 74 | 3.82e-32 | 106 |
| Msa0064380 | AT1G52825.2 | 68.182 | 66 | 20 | 1 | 1 | 66 | 1 | 65 | 3.26e-26 | 92.0 |
| Msa0064380 | AT1G52825.1 | 68.182 | 66 | 20 | 1 | 1 | 66 | 1 | 65 | 3.26e-26 | 92.0 |
Find 35 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAATCTCTCTCTTAAA+TGG | 0.118498 | 1_2:-25423594 | None:intergenic |
| TCTAAACTACTCTAAATAAA+AGG | 0.240104 | 1_2:+25426168 | Msa0064380:three_prime_UTR |
| AAGCATCAAACGAATGAAAT+TGG | 0.276298 | 1_2:+25423565 | Msa0064380:five_prime_UTR |
| ATTCTAGAAATTGCAAAGTT+TGG | 0.311771 | 1_2:+25423693 | Msa0064380:CDS |
| CGGTGGCGTATTTGTATCCT+TGG | 0.314633 | 1_2:-25425951 | None:intergenic |
| GAGATTTGATCTGAGTTGTT+TGG | 0.379171 | 1_2:+25423606 | Msa0064380:five_prime_UTR |
| CACCGCCACCAGAGGAACTT+AGG | 0.405202 | 1_2:+25425969 | Msa0064380:CDS |
| GAGTTCATCTTGTTTCTTCA+AGG | 0.411033 | 1_2:+25423634 | Msa0064380:five_prime_UTR |
| GTGGGTCGATTGTGCTTTAG+TGG | 0.429882 | 1_2:+25426042 | Msa0064380:three_prime_UTR |
| AATCTCTCTCTTAAATGGGC+TGG | 0.433079 | 1_2:-25423589 | None:intergenic |
| ATCAAATCTCTCTCTTAAAT+GGG | 0.438583 | 1_2:-25423593 | None:intergenic |
| ATCTCTCTCTTAAATGGGCT+GGG | 0.449260 | 1_2:-25423588 | None:intergenic |
| GCCATTTCCCTAAGTTCCTC+TGG | 0.453339 | 1_2:-25425977 | None:intergenic |
| ACCAGAGGAACTTAGGGAAA+TGG | 0.455027 | 1_2:+25425976 | Msa0064380:CDS |
| CTAAGTTCCTCTGGTGGCGG+TGG | 0.488476 | 1_2:-25425968 | None:intergenic |
| GAATTTGTGGAGGGAGTTGT+CGG | 0.502242 | 1_2:-25423766 | None:intergenic |
| CGAGGGAGCTAGCTCGCAAA+AGG | 0.515998 | 1_2:+25425999 | Msa0064380:CDS |
| CAATCACTGATGCTCCTTGT+GGG | 0.517735 | 1_2:+25426024 | Msa0064380:exon |
| GGTGGCGTATTTGTATCCTT+GGG | 0.519575 | 1_2:-25425950 | None:intergenic |
| TCCCTAAGTTCCTCTGGTGG+CGG | 0.519584 | 1_2:-25425971 | None:intergenic |
| AACTCCCTCCACAAATTCAT+CGG | 0.541704 | 1_2:+25423771 | Msa0064380:CDS |
| ACCGCCACCAGAGGAACTTA+GGG | 0.541856 | 1_2:+25425970 | Msa0064380:CDS |
| ATTTGATCTGAGTTGTTTGG+TGG | 0.546522 | 1_2:+25423609 | Msa0064380:five_prime_UTR |
| TCATCACTGGGAACATCGAA+GGG | 0.547643 | 1_2:+25423669 | Msa0064380:CDS |
| GTCATCACTGGGAACATCGA+AGG | 0.550820 | 1_2:+25423668 | Msa0064380:CDS |
| TAAACGTACATAAGAACGAT+TGG | 0.555395 | 1_2:-25423732 | None:intergenic |
| ACTTGAGAATTTCGCAAACA+AGG | 0.566635 | 1_2:-25426204 | None:intergenic |
| ACAATCACTGATGCTCCTTG+TGG | 0.568209 | 1_2:+25426023 | Msa0064380:exon |
| GTCATACATTGAATATCCCA+AGG | 0.616788 | 1_2:+25425934 | Msa0064380:CDS |
| AGGAACTTAGGGAAATGGCG+AGG | 0.624927 | 1_2:+25425981 | Msa0064380:CDS |
| GGAACTTAGGGAAATGGCGA+GGG | 0.630297 | 1_2:+25425982 | Msa0064380:CDS |
| ATTTCCCTAAGTTCCTCTGG+TGG | 0.642092 | 1_2:-25425974 | None:intergenic |
| AAATACGCCACCGCCACCAG+AGG | 0.666326 | 1_2:+25425961 | Msa0064380:CDS |
| TAAAGCACAATCGACCCACA+AGG | 0.677666 | 1_2:-25426038 | None:intergenic |
| CATCACTGGGAACATCGAAG+GGG | 0.716260 | 1_2:+25423670 | Msa0064380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTCTTCTATTTTATT+TGG | + | chr1_2:25425043-25425062 | Msa0064380:intron | 10.0% |
| !! | AAGAATAAATCTAAGAAAAA+AGG | - | chr1_2:25423824-25423843 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGATGTACTAT+CGG | - | chr1_2:25424382-25424401 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACTCCTAA+TGG | - | chr1_2:25425724-25425743 | None:intergenic | 15.0% |
| !! | TAACATAATTGCATTTATTT+GGG | - | chr1_2:25425854-25425873 | None:intergenic | 15.0% |
| !! | TTAACATAATTGCATTTATT+TGG | - | chr1_2:25425855-25425874 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTTTTTTTGTTG+AGG | + | chr1_2:25426073-25426092 | Msa0064380:three_prime_UTR | 15.0% |
| !!! | AGTTTTTTTTTTTTTGTTGA+GGG | + | chr1_2:25426074-25426093 | Msa0064380:three_prime_UTR | 15.0% |
| !!! | TTTTTCAATTAAGAAGACAA+GGG | - | chr1_2:25424016-25424035 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGAAGACA+AGG | - | chr1_2:25424017-25424036 | None:intergenic | 20.0% |
| !!! | ATATTTATACTCTAGTTCAA+TGG | + | chr1_2:25424075-25424094 | Msa0064380:intron | 20.0% |
| !!! | TTTTAATCTTTTGAGAAACA+GGG | + | chr1_2:25424454-25424473 | Msa0064380:intron | 20.0% |
| !!! | GAATTAGGTATATTTTTCTT+GGG | - | chr1_2:25424674-25424693 | None:intergenic | 20.0% |
| !!! | TGAATTAGGTATATTTTTCT+TGG | - | chr1_2:25424675-25424694 | None:intergenic | 20.0% |
| !!! | ATTAGATTCTTCATTTTCTT+TGG | + | chr1_2:25424829-25424848 | Msa0064380:intron | 20.0% |
| !!! | TTTTAATCTTTTGAGAAACA+GGG | - | chr1_2:25424454-25424473 | None:intergenic | 20.0% |
| !!! | TGTAACCAATTTATTTTACA+CGG | - | chr1_2:25424359-25424378 | None:intergenic | 20.0% |
| !! | GAAACCAAATACATTAATAA+TGG | + | chr1_2:25425374-25425393 | Msa0064380:intron | 20.0% |
| !! | AAGTTATAACTTAATCCATT+AGG | + | chr1_2:25425706-25425725 | Msa0064380:intron | 20.0% |
| !! | TCTAAACTACTCTAAATAAA+AGG | + | chr1_2:25426168-25426187 | Msa0064380:three_prime_UTR | 20.0% |
| ! | ATCAAATCTCTCTCTTAAAT+GGG | - | chr1_2:25423596-25423615 | None:intergenic | 25.0% |
| ! | AAAGTAAAAATGTCATCACT+GGG | + | chr1_2:25423657-25423676 | Msa0064380:exon | 25.0% |
| !! | ATTCTAGAAATTGCAAAGTT+TGG | + | chr1_2:25423693-25423712 | Msa0064380:CDS | 25.0% |
| ! | TTAACTAAAACAGACATGTT+TGG | + | chr1_2:25423889-25423908 | Msa0064380:intron | 25.0% |
| ! | TTATCTCTATTAGTGTGATT+AGG | + | chr1_2:25424154-25424173 | Msa0064380:intron | 25.0% |
| !! | CATCATTTTATATTTCGATC+AGG | - | chr1_2:25424190-25424209 | None:intergenic | 25.0% |
| ! | GTGTAAAATAAATTGGTTAC+AGG | - | chr1_2:25425077-25425096 | None:intergenic | 25.0% |
| ! | ACTATCGGTGTAAAATAAAT+TGG | - | chr1_2:25424367-25424386 | None:intergenic | 25.0% |
| ! | AAGATTAAAACTCAGCTTAT+AGG | - | chr1_2:25424444-25424463 | None:intergenic | 25.0% |
| !!! | GTTTTAATCTTTTGAGAAAC+AGG | + | chr1_2:25424453-25424472 | Msa0064380:intron | 25.0% |
| !! | CGAAGAATAAAAGCATAAAA+TGG | + | chr1_2:25424584-25424603 | Msa0064380:intron | 25.0% |
| ! | TTCAAATCGTTAATAGAATG+AGG | + | chr1_2:25424644-25424663 | Msa0064380:intron | 25.0% |
| ! | TCAAATCGTTAATAGAATGA+GGG | + | chr1_2:25424645-25424664 | Msa0064380:intron | 25.0% |
| !!! | GTTTTAATCTTTTGAGAAAC+AGG | - | chr1_2:25424453-25424472 | None:intergenic | 25.0% |
| ! | AAGATTAAAACTCAACTTGT+AGG | + | chr1_2:25424995-25425014 | Msa0064380:intron | 25.0% |
| ! | ACTATCCGTGTAAAATAAAT+TGG | + | chr1_2:25425070-25425089 | Msa0064380:intron | 25.0% |
| ! | ATTTACATGTCACTAAAAGA+GGG | + | chr1_2:25425125-25425144 | Msa0064380:intron | 25.0% |
| !! | CAACATTTTATATTTCGATC+AGG | + | chr1_2:25425257-25425276 | Msa0064380:intron | 25.0% |
| ! | ACCAAATACATTAATAATGG+TGG | + | chr1_2:25425377-25425396 | Msa0064380:intron | 25.0% |
| ! | TCCACCATTATTAATGTATT+TGG | - | chr1_2:25425381-25425400 | None:intergenic | 25.0% |
| !!! | CATAATACTTTTTTGGTACT+AGG | + | chr1_2:25425432-25425451 | Msa0064380:intron | 25.0% |
| ! | TCAAATCTTGCTACATTATA+GGG | - | chr1_2:25425467-25425486 | None:intergenic | 25.0% |
| ! | TTCAAATCTTGCTACATTAT+AGG | - | chr1_2:25425468-25425487 | None:intergenic | 25.0% |
| ! | ATTGACAATACTATTGTTAC+TGG | + | chr1_2:25425613-25425632 | Msa0064380:intron | 25.0% |
| ! | GAAATCTATCTACATATTCT+TGG | - | chr1_2:25425651-25425670 | None:intergenic | 25.0% |
| !! | TTTTTACAATAATCCAGTCT+GGG | + | chr1_2:25425759-25425778 | Msa0064380:intron | 25.0% |
| AAGCATCAAACGAATGAAAT+TGG | + | chr1_2:25423565-25423584 | Msa0064380:five_prime_UTR | 30.0% | |
| GATCAAATCTCTCTCTTAAA+TGG | - | chr1_2:25423597-25423616 | None:intergenic | 30.0% | |
| GAAAGTAAAAATGTCATCAC+TGG | + | chr1_2:25423656-25423675 | Msa0064380:exon | 30.0% | |
| TAAACGTACATAAGAACGAT+TGG | - | chr1_2:25423735-25423754 | None:intergenic | 30.0% | |
| !! | TTACTTTTCCGATGAATTTG+TGG | - | chr1_2:25423782-25423801 | None:intergenic | 30.0% |
| CTGATTGAATTTGTAGAGTT+TGG | - | chr1_2:25424110-25424129 | None:intergenic | 30.0% | |
| AGAAGAAATTTACCTTTGAG+TGG | + | chr1_2:25424402-25424421 | Msa0064380:intron | 30.0% | |
| AAATGTGAAGAAGCTGAATT+AGG | - | chr1_2:25424689-25424708 | None:intergenic | 30.0% | |
| TCAACAAACATACGAAGTTA+TGG | - | chr1_2:25424801-25424820 | None:intergenic | 30.0% | |
| ! | AGTAGAGATCAGAATTTGTT+TGG | - | chr1_2:25424943-25424962 | None:intergenic | 30.0% |
| ATAGAAGAAATTTACCTGAG+TGG | - | chr1_2:25425037-25425056 | None:intergenic | 30.0% | |
| CATTTACATGTCACTAAAAG+AGG | + | chr1_2:25425124-25425143 | Msa0064380:intron | 30.0% | |
| ! | TAAAAGAGGGTAACTTTTTG+AGG | + | chr1_2:25425138-25425157 | Msa0064380:intron | 30.0% |
| TTACATTAGTGTGACATGTT+AGG | - | chr1_2:25425293-25425312 | None:intergenic | 30.0% | |
| TTGTGATAGATGATCAAGAA+AGG | + | chr1_2:25425321-25425340 | Msa0064380:intron | 30.0% | |
| !! | GTATACAAGCTCTATTTTTC+CGG | + | chr1_2:25425403-25425422 | Msa0064380:intron | 30.0% |
| !! | TATACAAGCTCTATTTTTCC+GGG | + | chr1_2:25425404-25425423 | Msa0064380:intron | 30.0% |
| !! | AAAAAGTATTATGACAGTCC+CGG | - | chr1_2:25425425-25425444 | None:intergenic | 30.0% |
| !!! | GGACTGTCATAATACTTTTT+TGG | + | chr1_2:25425425-25425444 | Msa0064380:intron | 30.0% |
| ATTATATCACTGTGAAGTAG+CGG | + | chr1_2:25425562-25425581 | Msa0064380:intron | 30.0% | |
| TGTCAATCACAAATAACTAG+CGG | - | chr1_2:25425600-25425619 | None:intergenic | 30.0% | |
| ACAATACTATTGTTACTGGA+GGG | + | chr1_2:25425617-25425636 | Msa0064380:intron | 30.0% | |
| ! | GTTTTTACAATAATCCAGTC+TGG | + | chr1_2:25425758-25425777 | Msa0064380:intron | 30.0% |
| ACAAGCAATGACATTCAATT+TGG | - | chr1_2:25425805-25425824 | None:intergenic | 30.0% | |
| AATTGAATGTCATTGCTTGT+TGG | + | chr1_2:25425805-25425824 | Msa0064380:intron | 30.0% | |
| !!! | TTTTTTTTTGTTGAGGGAAG+TGG | + | chr1_2:25426080-25426099 | Msa0064380:three_prime_UTR | 30.0% |
| GAGATTTGATCTGAGTTGTT+TGG | + | chr1_2:25423606-25423625 | Msa0064380:five_prime_UTR | 35.0% | |
| ATTTGATCTGAGTTGTTTGG+TGG | + | chr1_2:25423609-25423628 | Msa0064380:five_prime_UTR | 35.0% | |
| ! | GAGTTCATCTTGTTTCTTCA+AGG | + | chr1_2:25423634-25423653 | Msa0064380:five_prime_UTR | 35.0% |
| ! | TTTTCCGATGAATTTGTGGA+GGG | - | chr1_2:25423778-25423797 | None:intergenic | 35.0% |
| TAAGCTATAAGCTCATGAGA+AGG | - | chr1_2:25423924-25423943 | None:intergenic | 35.0% | |
| CTCTACAAATTCAATCAGCT+AGG | + | chr1_2:25424112-25424131 | Msa0064380:intron | 35.0% | |
| ! | TCAAAGAGGGTAACTTTTTG+AGG | - | chr1_2:25424299-25424318 | None:intergenic | 35.0% |
| ATTTCCATGTCACTCAAAGA+GGG | - | chr1_2:25424312-25424331 | None:intergenic | 35.0% | |
| ACATGGAAATGCATGATTGA+GGG | + | chr1_2:25424322-25424341 | Msa0064380:intron | 35.0% | |
| CATGTTCATTCGCAAACTAA+CGG | - | chr1_2:25424725-25424744 | None:intergenic | 35.0% | |
| ! | TCGTATGTTTGTTGAGCATA+AGG | + | chr1_2:25424806-25424825 | Msa0064380:intron | 35.0% |
| AGTAATGCTCCAAATAACCA+GGG | - | chr1_2:25424878-25424897 | None:intergenic | 35.0% | |
| TAGTAATGCTCCAAATAACC+AGG | - | chr1_2:25424879-25424898 | None:intergenic | 35.0% | |
| TGCATGATTGAGTGATAGAA+GGG | - | chr1_2:25425106-25425125 | None:intergenic | 35.0% | |
| ATGCATGATTGAGTGATAGA+AGG | - | chr1_2:25425107-25425126 | None:intergenic | 35.0% | |
| GACAATACTATTGTTACTGG+AGG | + | chr1_2:25425616-25425635 | Msa0064380:intron | 35.0% | |
| TGAGCTTCTGTTACAAGTAA+TGG | - | chr1_2:25425683-25425702 | None:intergenic | 35.0% | |
| CAATGACATTCAATTTGGCA+AGG | - | chr1_2:25425800-25425819 | None:intergenic | 35.0% | |
| GTCATACATTGAATATCCCA+AGG | + | chr1_2:25425934-25425953 | Msa0064380:CDS | 35.0% | |
| ACTTGAGAATTTCGCAAACA+AGG | - | chr1_2:25426207-25426226 | None:intergenic | 35.0% | |
| ! | ATCTCTCTCTTAAATGGGCT+GGG | - | chr1_2:25423591-25423610 | None:intergenic | 40.0% |
| AATCTCTCTCTTAAATGGGC+TGG | - | chr1_2:25423592-25423611 | None:intergenic | 40.0% | |
| AACTCCCTCCACAAATTCAT+CGG | + | chr1_2:25423771-25423790 | Msa0064380:CDS | 40.0% | |
| ! | CTTTTCCGATGAATTTGTGG+AGG | - | chr1_2:25423779-25423798 | None:intergenic | 40.0% |
| TAAGCTCATGAGAAGGTCAA+GGG | - | chr1_2:25423917-25423936 | None:intergenic | 40.0% | |
| ATAAGCTCATGAGAAGGTCA+AGG | - | chr1_2:25423918-25423937 | None:intergenic | 40.0% | |
| CATTTCCATGTCACTCAAAG+AGG | - | chr1_2:25424313-25424332 | None:intergenic | 40.0% | |
| GACATGGAAATGCATGATTG+AGG | + | chr1_2:25424321-25424340 | Msa0064380:intron | 40.0% | |
| ATGCATGATTGAGGGATAGA+AGG | + | chr1_2:25424330-25424349 | Msa0064380:intron | 40.0% | |
| AACTGTTCTCTACCACTCAA+AGG | - | chr1_2:25424417-25424436 | None:intergenic | 40.0% | |
| !! | CGTTAGTTTGCGAATGAACA+TGG | + | chr1_2:25424723-25424742 | Msa0064380:intron | 40.0% |
| GAATGAACATGGTAGCTATG+TGG | + | chr1_2:25424734-25424753 | Msa0064380:intron | 40.0% | |
| AGTTATGGCAAACACAGAGA+TGG | - | chr1_2:25424786-25424805 | None:intergenic | 40.0% | |
| TGAGTGGTAGAGAACAGTTA+GGG | - | chr1_2:25424418-25424437 | None:intergenic | 40.0% | |
| TCATCACTGGGAACATCGAA+GGG | + | chr1_2:25423669-25423688 | Msa0064380:CDS | 45.0% | |
| GAATTTGTGGAGGGAGTTGT+CGG | - | chr1_2:25423769-25423788 | None:intergenic | 45.0% | |
| GTTACCCTCTTTGAGTGACA+TGG | + | chr1_2:25424305-25424324 | Msa0064380:intron | 45.0% | |
| TTAAACTTGCCTTCGTTCCC+TGG | + | chr1_2:25424858-25424877 | Msa0064380:intron | 45.0% | |
| TCCAAATAACCAGGGAACGA+AGG | - | chr1_2:25424870-25424889 | None:intergenic | 45.0% | |
| CTGAGTGGTAGAGAACAGTT+AGG | - | chr1_2:25425022-25425041 | None:intergenic | 45.0% | |
| CTAACTGTTCTCTACCACTC+AGG | + | chr1_2:25425020-25425039 | Msa0064380:intron | 45.0% | |
| GTGACGTAGCAATGCATGAT+TGG | + | chr1_2:25425185-25425204 | Msa0064380:intron | 45.0% | |
| TTAGCTACTAAGACCCAGAC+TGG | - | chr1_2:25425775-25425794 | None:intergenic | 45.0% | |
| GGTGGCGTATTTGTATCCTT+GGG | - | chr1_2:25425953-25425972 | None:intergenic | 45.0% | |
| ATTTCCCTAAGTTCCTCTGG+TGG | - | chr1_2:25425977-25425996 | None:intergenic | 45.0% | |
| ACCAGAGGAACTTAGGGAAA+TGG | + | chr1_2:25425976-25425995 | Msa0064380:CDS | 45.0% | |
| ACAATCACTGATGCTCCTTG+TGG | + | chr1_2:25426023-25426042 | Msa0064380:exon | 45.0% | |
| CAATCACTGATGCTCCTTGT+GGG | + | chr1_2:25426024-25426043 | Msa0064380:exon | 45.0% | |
| TAAAGCACAATCGACCCACA+AGG | - | chr1_2:25426041-25426060 | None:intergenic | 45.0% | |
| GTCATCACTGGGAACATCGA+AGG | + | chr1_2:25423668-25423687 | Msa0064380:CDS | 50.0% | |
| CATCACTGGGAACATCGAAG+GGG | + | chr1_2:25423670-25423689 | Msa0064380:CDS | 50.0% | |
| GCCTTCGTTCCCTGGTTATT+TGG | + | chr1_2:25424866-25424885 | Msa0064380:intron | 50.0% | |
| GCTTGACTGAGACGAAAGAC+AGG | - | chr1_2:25425350-25425369 | None:intergenic | 50.0% | |
| CGGTGGCGTATTTGTATCCT+TGG | - | chr1_2:25425954-25425973 | None:intergenic | 50.0% | |
| GCCATTTCCCTAAGTTCCTC+TGG | - | chr1_2:25425980-25425999 | None:intergenic | 50.0% | |
| AGGAACTTAGGGAAATGGCG+AGG | + | chr1_2:25425981-25426000 | Msa0064380:CDS | 50.0% | |
| GGAACTTAGGGAAATGGCGA+GGG | + | chr1_2:25425982-25426001 | Msa0064380:CDS | 50.0% | |
| GTGGGTCGATTGTGCTTTAG+TGG | + | chr1_2:25426042-25426061 | Msa0064380:three_prime_UTR | 50.0% | |
| !! | GAAACAGGGTATCGCAGCTC+AGG | + | chr1_2:25424468-25424487 | Msa0064380:intron | 55.0% |
| !! | GAAACAGGGTATCGCAGCTC+AGG | - | chr1_2:25424468-25424487 | None:intergenic | 55.0% |
| ACCGCCACCAGAGGAACTTA+GGG | + | chr1_2:25425970-25425989 | Msa0064380:CDS | 55.0% | |
| TCCCTAAGTTCCTCTGGTGG+CGG | - | chr1_2:25425974-25425993 | None:intergenic | 55.0% | |
| AAATACGCCACCGCCACCAG+AGG | + | chr1_2:25425961-25425980 | Msa0064380:CDS | 60.0% | |
| !! | CTAAGTTCCTCTGGTGGCGG+TGG | - | chr1_2:25425971-25425990 | None:intergenic | 60.0% |
| CACCGCCACCAGAGGAACTT+AGG | + | chr1_2:25425969-25425988 | Msa0064380:CDS | 60.0% | |
| CGAGGGAGCTAGCTCGCAAA+AGG | + | chr1_2:25425999-25426018 | Msa0064380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25423557 | 25426267 | 25423557 | ID=Msa0064380;Name=Msa0064380 |
| chr1_2 | mRNA | 25423557 | 25426267 | 25423557 | ID=Msa0064380-mRNA-1;Parent=Msa0064380;Name=Msa0064380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|0|0|2|234|77 |
| chr1_2 | exon | 25423557 | 25423797 | 25423557 | ID=Msa0064380-mRNA-1:exon:9080;Parent=Msa0064380-mRNA-1 |
| chr1_2 | exon | 25425932 | 25426267 | 25425932 | ID=Msa0064380-mRNA-1:exon:9081;Parent=Msa0064380-mRNA-1 |
| chr1_2 | five_prime_UTR | 25423557 | 25423665 | 25423557 | ID=Msa0064380-mRNA-1:five_prime_utr;Parent=Msa0064380-mRNA-1 |
| chr1_2 | CDS | 25423666 | 25423797 | 25423666 | ID=Msa0064380-mRNA-1:cds;Parent=Msa0064380-mRNA-1 |
| chr1_2 | CDS | 25425932 | 25426033 | 25425932 | ID=Msa0064380-mRNA-1:cds;Parent=Msa0064380-mRNA-1 |
| chr1_2 | three_prime_UTR | 25426034 | 25426267 | 25426034 | ID=Msa0064380-mRNA-1:three_prime_utr;Parent=Msa0064380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
