Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206350 | A0A2Z6NCH5 | 45.020 | 251 | 70 | 6 | 27 | 218 | 38 | 279 | 1.03e-44 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078900 | Msa1206350 | 0.800487 | 1.408430e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206350 | MtrunA17_Chr8g0335481 | 44.292 | 219 | 66 | 4 | 27 | 198 | 39 | 248 | 1.04e-45 | 152 |
| Msa1206350 | MtrunA17_Chr3g0111401 | 40.359 | 223 | 84 | 3 | 20 | 202 | 44 | 257 | 5.02e-39 | 135 |
| Msa1206350 | MtrunA17_Chr3g0112031 | 37.179 | 234 | 103 | 6 | 5 | 202 | 11 | 236 | 4.63e-38 | 132 |
| Msa1206350 | MtrunA17_Chr3g0111381 | 40.092 | 217 | 80 | 3 | 27 | 202 | 42 | 249 | 1.43e-37 | 132 |
| Msa1206350 | MtrunA17_Chr3g0111411 | 38.863 | 211 | 81 | 2 | 27 | 198 | 52 | 253 | 9.56e-37 | 131 |
| Msa1206350 | MtrunA17_Chr3g0110521 | 35.246 | 244 | 91 | 5 | 27 | 217 | 38 | 267 | 4.92e-34 | 122 |
| Msa1206350 | MtrunA17_Chr8g0382941 | 36.771 | 223 | 84 | 5 | 27 | 201 | 43 | 256 | 2.71e-32 | 119 |
| Msa1206350 | MtrunA17_Chr5g0410011 | 37.915 | 211 | 83 | 4 | 27 | 198 | 41 | 242 | 2.28e-31 | 115 |
| Msa1206350 | MtrunA17_Chr1g0168481 | 32.645 | 242 | 105 | 5 | 10 | 202 | 26 | 258 | 1.93e-29 | 110 |
| Msa1206350 | MtrunA17_Chr6g0455431 | 37.500 | 216 | 83 | 6 | 27 | 198 | 371 | 578 | 6.02e-28 | 110 |
| Msa1206350 | MtrunA17_Chr6g0455431 | 37.037 | 216 | 84 | 6 | 27 | 198 | 37 | 244 | 3.59e-27 | 108 |
| Msa1206350 | MtrunA17_Chr3g0110831 | 36.916 | 214 | 78 | 6 | 37 | 206 | 32 | 232 | 1.04e-27 | 105 |
| Msa1206350 | MtrunA17_Chr3g0119451 | 34.951 | 206 | 86 | 2 | 20 | 186 | 56 | 252 | 3.09e-27 | 105 |
| Msa1206350 | MtrunA17_Chr5g0415061 | 34.375 | 224 | 83 | 5 | 27 | 198 | 33 | 244 | 3.87e-27 | 104 |
| Msa1206350 | MtrunA17_Chr3g0110871 | 38.605 | 215 | 81 | 5 | 27 | 198 | 41 | 247 | 9.04e-27 | 104 |
| Msa1206350 | MtrunA17_Chr3g0110911 | 59.804 | 102 | 36 | 2 | 98 | 198 | 73 | 170 | 1.08e-26 | 101 |
| Msa1206350 | MtrunA17_Chr2g0285661 | 34.722 | 216 | 93 | 4 | 31 | 205 | 49 | 257 | 3.21e-25 | 100 |
| Msa1206350 | MtrunA17_Chr2g0285751 | 36.702 | 188 | 99 | 7 | 27 | 205 | 48 | 224 | 1.43e-24 | 97.8 |
| Msa1206350 | MtrunA17_Chr3g0111421 | 34.259 | 216 | 95 | 3 | 27 | 205 | 43 | 248 | 2.28e-24 | 98.6 |
| Msa1206350 | MtrunA17_Chr7g0233591 | 36.898 | 187 | 81 | 5 | 20 | 205 | 44 | 194 | 3.42e-23 | 92.8 |
| Msa1206350 | MtrunA17_Chr1g0168491 | 33.482 | 224 | 93 | 6 | 27 | 202 | 43 | 258 | 5.00e-23 | 94.0 |
| Msa1206350 | MtrunA17_Chr2g0285671 | 31.982 | 222 | 107 | 4 | 27 | 205 | 44 | 264 | 6.12e-23 | 94.4 |
| Msa1206350 | MtrunA17_Chr3g0119481 | 33.333 | 201 | 84 | 4 | 27 | 186 | 33 | 224 | 1.11e-22 | 92.4 |
| Msa1206350 | MtrunA17_Chr8g0353511 | 36.869 | 198 | 80 | 6 | 27 | 194 | 30 | 212 | 4.69e-22 | 89.7 |
| Msa1206350 | MtrunA17_Chr3g0110491 | 33.178 | 214 | 95 | 4 | 27 | 198 | 67 | 274 | 2.17e-21 | 90.1 |
| Msa1206350 | MtrunA17_Chr2g0285641 | 32.394 | 213 | 96 | 4 | 31 | 202 | 52 | 257 | 5.24e-21 | 89.4 |
| Msa1206350 | MtrunA17_Chr3g0119461 | 31.797 | 217 | 97 | 4 | 27 | 202 | 33 | 239 | 5.90e-21 | 87.8 |
| Msa1206350 | MtrunA17_Chr3g0119441 | 39.355 | 155 | 73 | 5 | 33 | 184 | 2 | 138 | 9.92e-20 | 81.6 |
| Msa1206350 | MtrunA17_Chr3g0119471 | 32.673 | 202 | 85 | 5 | 27 | 187 | 14 | 205 | 1.84e-18 | 80.9 |
| Msa1206350 | MtrunA17_Chr3g0111041 | 48.101 | 79 | 33 | 2 | 27 | 99 | 43 | 119 | 4.63e-16 | 72.4 |
| Msa1206350 | MtrunA17_Chr3g0119501 | 31.016 | 187 | 78 | 4 | 56 | 202 | 4 | 179 | 1.56e-15 | 72.0 |
| Msa1206350 | MtrunA17_Chr3g0110881 | 32.597 | 181 | 66 | 3 | 66 | 202 | 18 | 186 | 1.66e-14 | 69.7 |
| Msa1206350 | MtrunA17_Chr3g0110851 | 73.171 | 41 | 11 | 0 | 27 | 67 | 39 | 79 | 1.36e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGCACTTATCACAATATA+AGG | 0.192453 | 8_1:+63315894 | None:intergenic |
| TCAGTCCAGGTTTGGGAAAA+AGG | 0.212488 | 8_1:-63315088 | Msa1206350:CDS |
| TGATGATGGTTTAGCTTATA+TGG | 0.223706 | 8_1:-63315045 | Msa1206350:CDS |
| CCCAAACCTGGACTGAAATT+AGG | 0.238146 | 8_1:+63315095 | None:intergenic |
| GGTGGATTGCCTGCTCTTCT+TGG | 0.249994 | 8_1:-63315164 | Msa1206350:CDS |
| AAGGATTGCCTTGAAGTTAT+TGG | 0.267970 | 8_1:-63315356 | Msa1206350:CDS |
| TCCTAATTTCAGTCCAGGTT+TGG | 0.324736 | 8_1:-63315096 | Msa1206350:CDS |
| ATGTAGCAACAGCCTATCTA+AGG | 0.330677 | 8_1:-63315375 | Msa1206350:intron |
| CCTAATTTCAGTCCAGGTTT+GGG | 0.348191 | 8_1:-63315095 | Msa1206350:CDS |
| TGACCTAAGTTGCGGTCATC+TGG | 0.358457 | 8_1:-63315751 | Msa1206350:CDS |
| TGAATAGTACGCCACATTAG+AGG | 0.395399 | 8_1:+63315834 | None:intergenic |
| ATCTGGAAGACATTGCTGTT+AGG | 0.397175 | 8_1:-63315734 | Msa1206350:CDS |
| TCTGGAAGACATTGCTGTTA+GGG | 0.418174 | 8_1:-63315733 | Msa1206350:CDS |
| CTTTGTCCTAATTTCAGTCC+AGG | 0.422251 | 8_1:-63315101 | Msa1206350:CDS |
| CTTCAAGGCAATCCTTAGAT+AGG | 0.426030 | 8_1:+63315363 | None:intergenic |
| GTGCACTTATCACAATATAA+GGG | 0.439528 | 8_1:+63315895 | None:intergenic |
| GGGCAGCCACCAAGAAGAGC+AGG | 0.453076 | 8_1:+63315155 | None:intergenic |
| CTTCCAGATGACCGCAACTT+AGG | 0.468161 | 8_1:+63315748 | None:intergenic |
| CTACAAACTGTAGTCTCAAA+AGG | 0.472883 | 8_1:-63316046 | Msa1206350:CDS |
| GACAGTTACTACTATGATGA+TGG | 0.473623 | 8_1:-63315059 | Msa1206350:CDS |
| GGATTGCCTGCTCTTCTTGG+TGG | 0.500640 | 8_1:-63315161 | Msa1206350:CDS |
| TTGTAGCTTGTGCATTTCCA+TGG | 0.509851 | 8_1:+63316063 | None:intergenic |
| TGACTTTAGTCGTTCGCGCA+TGG | 0.515901 | 8_1:-63315796 | Msa1206350:CDS |
| ATAATGTTTGTCCTTTGTTG+TGG | 0.521429 | 8_1:-63315872 | Msa1206350:CDS |
| AAAATCCTTTCAATTCAAGA+TGG | 0.523642 | 8_1:+63315198 | None:intergenic |
| TTATGCCATCTTGAATTGAA+AGG | 0.524548 | 8_1:-63315203 | Msa1206350:CDS |
| CATATATTTGAAAAGTTCGT+CGG | 0.525469 | 8_1:+63315701 | None:intergenic |
| AGATTTAGTGACTTCAAAAG+AGG | 0.529554 | 8_1:+63315323 | None:intergenic |
| AACATCGACCAATAACTTCA+AGG | 0.541666 | 8_1:+63315348 | None:intergenic |
| TTTGTTGTGGAATATTTGCA+AGG | 0.550495 | 8_1:-63315859 | Msa1206350:CDS |
| AGATTAAGAGATTTAAGAAG+AGG | 0.553863 | 8_1:+63315134 | None:intergenic |
| TCAATCAAAGCACTAATGGC+GGG | 0.559871 | 8_1:-63315286 | Msa1206350:CDS |
| TTCAATCAAAGCACTAATGG+CGG | 0.560412 | 8_1:-63315287 | Msa1206350:CDS |
| GATTAAGAGATTTAAGAAGA+GGG | 0.565300 | 8_1:+63315135 | None:intergenic |
| CTGGAAGACATTGCTGTTAG+GGG | 0.578454 | 8_1:-63315732 | Msa1206350:CDS |
| GTTTGTGTACTCTTATGACG+AGG | 0.606788 | 8_1:-63315264 | Msa1206350:CDS |
| GATTTAGTGACTTCAAAAGA+GGG | 0.608330 | 8_1:+63315324 | None:intergenic |
| TGGAAGACATTGCTGTTAGG+GGG | 0.619762 | 8_1:-63315731 | Msa1206350:CDS |
| TTGCAAATATTCCACAACAA+AGG | 0.620126 | 8_1:+63315861 | None:intergenic |
| CTTAAATCTCTTAATCTACG+AGG | 0.638093 | 8_1:-63315128 | Msa1206350:CDS |
| CATCATAGTAGTAACTGTCA+CGG | 0.647854 | 8_1:+63315063 | None:intergenic |
| TGTGCGATTGACCTAAGTTG+CGG | 0.650753 | 8_1:-63315759 | Msa1206350:CDS |
| TTTGTGTACTCTTATGACGA+GGG | 0.653464 | 8_1:-63315263 | Msa1206350:CDS |
| TTTGCAAGGATCCTCTAATG+TGG | 0.672324 | 8_1:-63315845 | Msa1206350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAAATTATTATGAAAC+TGG | + | chr8_1:63315444-63315463 | None:intergenic | 15.0% |
| !! | ATAACAAATTATTATGAAAC+TGG | + | chr8_1:63315444-63315463 | None:intergenic | 15.0% |
| !! | AAATATCTTCAGAAATGAAA+AGG | + | chr8_1:63315149-63315168 | None:intergenic | 20.0% |
| !! | ATTATGCTAAATGACTAAAA+AGG | + | chr8_1:63315569-63315588 | None:intergenic | 20.0% |
| !! | AAATATCTTCAGAAATGAAA+AGG | + | chr8_1:63315149-63315168 | None:intergenic | 20.0% |
| !! | ATTATGCTAAATGACTAAAA+AGG | + | chr8_1:63315569-63315588 | None:intergenic | 20.0% |
| !! | AAACTTGCTTTCATATCAAT+TGG | + | chr8_1:63315125-63315144 | None:intergenic | 25.0% |
| ! | CATATATTTGAAAAGTTCGT+CGG | + | chr8_1:63315388-63315407 | None:intergenic | 25.0% |
| !! | TTTTCAAATATATGGCTCAT+AGG | - | chr8_1:63315394-63315413 | Msa1206350:intron | 25.0% |
| ! | ATGACTAAAAAGGAGAATAT+GGG | + | chr8_1:63315559-63315578 | None:intergenic | 25.0% |
| ! | AATGACTAAAAAGGAGAATA+TGG | + | chr8_1:63315560-63315579 | None:intergenic | 25.0% |
| ! | CAACTCAAATAGATATTAAC+TGG | - | chr8_1:63315621-63315640 | Msa1206350:intron | 25.0% |
| ! | TGGAATGAAATTTCAGATAA+AGG | - | chr8_1:63315659-63315678 | Msa1206350:intron | 25.0% |
| ! | GGAATGAAATTTCAGATAAA+GGG | - | chr8_1:63315660-63315679 | Msa1206350:intron | 25.0% |
| !!! | TTTTTCAATCAAAGCACTAA+TGG | - | chr8_1:63315796-63315815 | Msa1206350:CDS | 25.0% |
| ! | TTATTGCAAAAACAATGTCT+GGG | - | chr8_1:63315860-63315879 | Msa1206350:CDS | 25.0% |
| ! | AAAATCCTTTCAATTCAAGA+TGG | + | chr8_1:63315891-63315910 | None:intergenic | 25.0% |
| !! | AAAGGATTTTTGCGTAATTA+TGG | - | chr8_1:63315901-63315920 | Msa1206350:CDS | 25.0% |
| ! | GATTAAGAGATTTAAGAAGA+GGG | + | chr8_1:63315954-63315973 | None:intergenic | 25.0% |
| ! | AGATTAAGAGATTTAAGAAG+AGG | + | chr8_1:63315955-63315974 | None:intergenic | 25.0% |
| !! | AAACTTGCTTTCATATCAAT+TGG | + | chr8_1:63315125-63315144 | None:intergenic | 25.0% |
| ! | CATATATTTGAAAAGTTCGT+CGG | + | chr8_1:63315388-63315407 | None:intergenic | 25.0% |
| !! | TTTTCAAATATATGGCTCAT+AGG | - | chr8_1:63315394-63315413 | Msa1206350:intron | 25.0% |
| ! | ATGACTAAAAAGGAGAATAT+GGG | + | chr8_1:63315559-63315578 | None:intergenic | 25.0% |
| ! | AATGACTAAAAAGGAGAATA+TGG | + | chr8_1:63315560-63315579 | None:intergenic | 25.0% |
| ! | CAACTCAAATAGATATTAAC+TGG | - | chr8_1:63315621-63315640 | Msa1206350:intron | 25.0% |
| ! | TGGAATGAAATTTCAGATAA+AGG | - | chr8_1:63315659-63315678 | Msa1206350:intron | 25.0% |
| ! | GGAATGAAATTTCAGATAAA+GGG | - | chr8_1:63315660-63315679 | Msa1206350:intron | 25.0% |
| !!! | TTTTTCAATCAAAGCACTAA+TGG | - | chr8_1:63315796-63315815 | Msa1206350:CDS | 25.0% |
| ! | TTATTGCAAAAACAATGTCT+GGG | - | chr8_1:63315860-63315879 | Msa1206350:CDS | 25.0% |
| ! | AAAATCCTTTCAATTCAAGA+TGG | + | chr8_1:63315891-63315910 | None:intergenic | 25.0% |
| !! | AAAGGATTTTTGCGTAATTA+TGG | - | chr8_1:63315901-63315920 | Msa1206350:CDS | 25.0% |
| ! | GATTAAGAGATTTAAGAAGA+GGG | + | chr8_1:63315954-63315973 | None:intergenic | 25.0% |
| ! | AGATTAAGAGATTTAAGAAG+AGG | + | chr8_1:63315955-63315974 | None:intergenic | 25.0% |
| ATTGTTAGTCAGACTAAGTT+TGG | - | chr8_1:63315090-63315109 | Msa1206350:CDS | 30.0% | |
| GTGCACTTATCACAATATAA+GGG | + | chr8_1:63315194-63315213 | None:intergenic | 30.0% | |
| TGTGCACTTATCACAATATA+AGG | + | chr8_1:63315195-63315214 | None:intergenic | 30.0% | |
| ATAATGTTTGTCCTTTGTTG+TGG | - | chr8_1:63315214-63315233 | Msa1206350:CDS | 30.0% | |
| TTGCAAATATTCCACAACAA+AGG | + | chr8_1:63315228-63315247 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGGAATATTTGCA+AGG | - | chr8_1:63315227-63315246 | Msa1206350:CDS | 30.0% |
| ! | CGACGAACTTTTCAAATATA+TGG | - | chr8_1:63315386-63315405 | Msa1206350:intron | 30.0% |
| ! | ATTAACTGGTTACGACTTTT+TGG | - | chr8_1:63315635-63315654 | Msa1206350:intron | 30.0% |
| GATTTAGTGACTTCAAAAGA+GGG | + | chr8_1:63315765-63315784 | None:intergenic | 30.0% | |
| AGATTTAGTGACTTCAAAAG+AGG | + | chr8_1:63315766-63315785 | None:intergenic | 30.0% | |
| GTTATTGCAAAAACAATGTC+TGG | - | chr8_1:63315859-63315878 | Msa1206350:CDS | 30.0% | |
| TTATGCCATCTTGAATTGAA+AGG | - | chr8_1:63315883-63315902 | Msa1206350:CDS | 30.0% | |
| CTTAAATCTCTTAATCTACG+AGG | - | chr8_1:63315958-63315977 | Msa1206350:intron | 30.0% | |
| !! | TGATGATGGTTTAGCTTATA+TGG | - | chr8_1:63316041-63316060 | Msa1206350:CDS | 30.0% |
| ATTGTTAGTCAGACTAAGTT+TGG | - | chr8_1:63315090-63315109 | Msa1206350:CDS | 30.0% | |
| GTGCACTTATCACAATATAA+GGG | + | chr8_1:63315194-63315213 | None:intergenic | 30.0% | |
| TGTGCACTTATCACAATATA+AGG | + | chr8_1:63315195-63315214 | None:intergenic | 30.0% | |
| ATAATGTTTGTCCTTTGTTG+TGG | - | chr8_1:63315214-63315233 | Msa1206350:CDS | 30.0% | |
| TTGCAAATATTCCACAACAA+AGG | + | chr8_1:63315228-63315247 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGGAATATTTGCA+AGG | - | chr8_1:63315227-63315246 | Msa1206350:CDS | 30.0% |
| ! | CGACGAACTTTTCAAATATA+TGG | - | chr8_1:63315386-63315405 | Msa1206350:intron | 30.0% |
| ! | ATTAACTGGTTACGACTTTT+TGG | - | chr8_1:63315635-63315654 | Msa1206350:intron | 30.0% |
| GATTTAGTGACTTCAAAAGA+GGG | + | chr8_1:63315765-63315784 | None:intergenic | 30.0% | |
| AGATTTAGTGACTTCAAAAG+AGG | + | chr8_1:63315766-63315785 | None:intergenic | 30.0% | |
| GTTATTGCAAAAACAATGTC+TGG | - | chr8_1:63315859-63315878 | Msa1206350:CDS | 30.0% | |
| TTATGCCATCTTGAATTGAA+AGG | - | chr8_1:63315883-63315902 | Msa1206350:CDS | 30.0% | |
| CTTAAATCTCTTAATCTACG+AGG | - | chr8_1:63315958-63315977 | Msa1206350:intron | 30.0% | |
| !! | TGATGATGGTTTAGCTTATA+TGG | - | chr8_1:63316041-63316060 | Msa1206350:CDS | 30.0% |
| CTACAAACTGTAGTCTCAAA+AGG | - | chr8_1:63315040-63315059 | Msa1206350:CDS | 35.0% | |
| ATAAGGGTTACTGAGCAAAA+TGG | + | chr8_1:63315178-63315197 | None:intergenic | 35.0% | |
| AGCAAGATGACATATCAAGA+AGG | + | chr8_1:63315480-63315499 | None:intergenic | 35.0% | |
| TATGTCATCTTGCTTAACGA+TGG | - | chr8_1:63315486-63315505 | Msa1206350:intron | 35.0% | |
| AAGGATTGCCTTGAAGTTAT+TGG | - | chr8_1:63315730-63315749 | Msa1206350:CDS | 35.0% | |
| AACATCGACCAATAACTTCA+AGG | + | chr8_1:63315741-63315760 | None:intergenic | 35.0% | |
| ! | TTCAATCAAAGCACTAATGG+CGG | - | chr8_1:63315799-63315818 | Msa1206350:CDS | 35.0% |
| TTTGTGTACTCTTATGACGA+GGG | - | chr8_1:63315823-63315842 | Msa1206350:CDS | 35.0% | |
| ! | GGATTTTTGCGTAATTATGG+TGG | - | chr8_1:63315904-63315923 | Msa1206350:intron | 35.0% |
| CATCATAGTAGTAACTGTCA+CGG | + | chr8_1:63316026-63316045 | None:intergenic | 35.0% | |
| GACAGTTACTACTATGATGA+TGG | - | chr8_1:63316027-63316046 | Msa1206350:CDS | 35.0% | |
| CTACAAACTGTAGTCTCAAA+AGG | - | chr8_1:63315040-63315059 | Msa1206350:CDS | 35.0% | |
| ATAAGGGTTACTGAGCAAAA+TGG | + | chr8_1:63315178-63315197 | None:intergenic | 35.0% | |
| AGCAAGATGACATATCAAGA+AGG | + | chr8_1:63315480-63315499 | None:intergenic | 35.0% | |
| TATGTCATCTTGCTTAACGA+TGG | - | chr8_1:63315486-63315505 | Msa1206350:intron | 35.0% | |
| AAGGATTGCCTTGAAGTTAT+TGG | - | chr8_1:63315730-63315749 | Msa1206350:CDS | 35.0% | |
| AACATCGACCAATAACTTCA+AGG | + | chr8_1:63315741-63315760 | None:intergenic | 35.0% | |
| ! | TTCAATCAAAGCACTAATGG+CGG | - | chr8_1:63315799-63315818 | Msa1206350:CDS | 35.0% |
| TTTGTGTACTCTTATGACGA+GGG | - | chr8_1:63315823-63315842 | Msa1206350:CDS | 35.0% | |
| ! | GGATTTTTGCGTAATTATGG+TGG | - | chr8_1:63315904-63315923 | Msa1206350:intron | 35.0% |
| CATCATAGTAGTAACTGTCA+CGG | + | chr8_1:63316026-63316045 | None:intergenic | 35.0% | |
| GACAGTTACTACTATGATGA+TGG | - | chr8_1:63316027-63316046 | Msa1206350:CDS | 35.0% | |
| TTTGCAAGGATCCTCTAATG+TGG | - | chr8_1:63315241-63315260 | Msa1206350:CDS | 40.0% | |
| TGAATAGTACGCCACATTAG+AGG | + | chr8_1:63315255-63315274 | None:intergenic | 40.0% | |
| ! | ATCTGGAAGACATTGCTGTT+AGG | - | chr8_1:63315352-63315371 | Msa1206350:CDS | 40.0% |
| ! | TCTGGAAGACATTGCTGTTA+GGG | - | chr8_1:63315353-63315372 | Msa1206350:CDS | 40.0% |
| GGTTGAGTGAATTTGTGAAG+AGG | - | chr8_1:63315681-63315700 | Msa1206350:intron | 40.0% | |
| ATGTAGCAACAGCCTATCTA+AGG | - | chr8_1:63315711-63315730 | Msa1206350:CDS | 40.0% | |
| CTTCAAGGCAATCCTTAGAT+AGG | + | chr8_1:63315726-63315745 | None:intergenic | 40.0% | |
| ! | TCAATCAAAGCACTAATGGC+GGG | - | chr8_1:63315800-63315819 | Msa1206350:CDS | 40.0% |
| GTTTGTGTACTCTTATGACG+AGG | - | chr8_1:63315822-63315841 | Msa1206350:CDS | 40.0% | |
| CTTTGTCCTAATTTCAGTCC+AGG | - | chr8_1:63315985-63316004 | Msa1206350:intron | 40.0% | |
| TCCTAATTTCAGTCCAGGTT+TGG | - | chr8_1:63315990-63316009 | Msa1206350:intron | 40.0% | |
| CCTAATTTCAGTCCAGGTTT+GGG | - | chr8_1:63315991-63316010 | Msa1206350:intron | 40.0% | |
| TTTGCAAGGATCCTCTAATG+TGG | - | chr8_1:63315241-63315260 | Msa1206350:CDS | 40.0% | |
| TGAATAGTACGCCACATTAG+AGG | + | chr8_1:63315255-63315274 | None:intergenic | 40.0% | |
| ! | ATCTGGAAGACATTGCTGTT+AGG | - | chr8_1:63315352-63315371 | Msa1206350:CDS | 40.0% |
| ! | TCTGGAAGACATTGCTGTTA+GGG | - | chr8_1:63315353-63315372 | Msa1206350:CDS | 40.0% |
| GGTTGAGTGAATTTGTGAAG+AGG | - | chr8_1:63315681-63315700 | Msa1206350:intron | 40.0% | |
| ATGTAGCAACAGCCTATCTA+AGG | - | chr8_1:63315711-63315730 | Msa1206350:CDS | 40.0% | |
| CTTCAAGGCAATCCTTAGAT+AGG | + | chr8_1:63315726-63315745 | None:intergenic | 40.0% | |
| ! | TCAATCAAAGCACTAATGGC+GGG | - | chr8_1:63315800-63315819 | Msa1206350:CDS | 40.0% |
| GTTTGTGTACTCTTATGACG+AGG | - | chr8_1:63315822-63315841 | Msa1206350:CDS | 40.0% | |
| CTTTGTCCTAATTTCAGTCC+AGG | - | chr8_1:63315985-63316004 | Msa1206350:intron | 40.0% | |
| TCCTAATTTCAGTCCAGGTT+TGG | - | chr8_1:63315990-63316009 | Msa1206350:intron | 40.0% | |
| CCTAATTTCAGTCCAGGTTT+GGG | - | chr8_1:63315991-63316010 | Msa1206350:intron | 40.0% | |
| TGTGCGATTGACCTAAGTTG+CGG | - | chr8_1:63315327-63315346 | Msa1206350:CDS | 45.0% | |
| ! | CTGGAAGACATTGCTGTTAG+GGG | - | chr8_1:63315354-63315373 | Msa1206350:CDS | 45.0% |
| ! | TGGAAGACATTGCTGTTAGG+GGG | - | chr8_1:63315355-63315374 | Msa1206350:CDS | 45.0% |
| !! | ACTGGTTACGACTTTTTGGC+TGG | - | chr8_1:63315639-63315658 | Msa1206350:intron | 45.0% |
| CCCAAACCTGGACTGAAATT+AGG | + | chr8_1:63315994-63316013 | None:intergenic | 45.0% | |
| TCAGTCCAGGTTTGGGAAAA+AGG | - | chr8_1:63315998-63316017 | Msa1206350:intron | 45.0% | |
| TGTGCGATTGACCTAAGTTG+CGG | - | chr8_1:63315327-63315346 | Msa1206350:CDS | 45.0% | |
| ! | CTGGAAGACATTGCTGTTAG+GGG | - | chr8_1:63315354-63315373 | Msa1206350:CDS | 45.0% |
| ! | TGGAAGACATTGCTGTTAGG+GGG | - | chr8_1:63315355-63315374 | Msa1206350:CDS | 45.0% |
| !! | ACTGGTTACGACTTTTTGGC+TGG | - | chr8_1:63315639-63315658 | Msa1206350:intron | 45.0% |
| CCCAAACCTGGACTGAAATT+AGG | + | chr8_1:63315994-63316013 | None:intergenic | 45.0% | |
| TCAGTCCAGGTTTGGGAAAA+AGG | - | chr8_1:63315998-63316017 | Msa1206350:intron | 45.0% | |
| TGACTTTAGTCGTTCGCGCA+TGG | - | chr8_1:63315290-63315309 | Msa1206350:CDS | 50.0% | |
| TGACCTAAGTTGCGGTCATC+TGG | - | chr8_1:63315335-63315354 | Msa1206350:CDS | 50.0% | |
| CTTCCAGATGACCGCAACTT+AGG | + | chr8_1:63315341-63315360 | None:intergenic | 50.0% | |
| ! | GACATTGCTGTTAGGGGGTT+CGG | - | chr8_1:63315360-63315379 | Msa1206350:CDS | 50.0% |
| ! | CGGAACCTTTTTCCCAAACC+TGG | + | chr8_1:63316006-63316025 | None:intergenic | 50.0% |
| TGACTTTAGTCGTTCGCGCA+TGG | - | chr8_1:63315290-63315309 | Msa1206350:CDS | 50.0% | |
| TGACCTAAGTTGCGGTCATC+TGG | - | chr8_1:63315335-63315354 | Msa1206350:CDS | 50.0% | |
| CTTCCAGATGACCGCAACTT+AGG | + | chr8_1:63315341-63315360 | None:intergenic | 50.0% | |
| ! | GACATTGCTGTTAGGGGGTT+CGG | - | chr8_1:63315360-63315379 | Msa1206350:CDS | 50.0% |
| ! | CGGAACCTTTTTCCCAAACC+TGG | + | chr8_1:63316006-63316025 | None:intergenic | 50.0% |
| !! | GGTGGATTGCCTGCTCTTCT+TGG | - | chr8_1:63315922-63315941 | Msa1206350:intron | 55.0% |
| GGATTGCCTGCTCTTCTTGG+TGG | - | chr8_1:63315925-63315944 | Msa1206350:intron | 55.0% | |
| !! | GGTGGATTGCCTGCTCTTCT+TGG | - | chr8_1:63315922-63315941 | Msa1206350:intron | 55.0% |
| GGATTGCCTGCTCTTCTTGG+TGG | - | chr8_1:63315925-63315944 | Msa1206350:intron | 55.0% | |
| GGGCAGCCACCAAGAAGAGC+AGG | + | chr8_1:63315934-63315953 | None:intergenic | 65.0% | |
| GGGCAGCCACCAAGAAGAGC+AGG | + | chr8_1:63315934-63315953 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 63315025 | 63316083 | 63315025 | ID=Msa1206350;Name=Msa1206350 |
| chr8_1 | mRNA | 63315025 | 63316083 | 63315025 | ID=Msa1206350-mRNA-1;Parent=Msa1206350;Name=Msa1206350-mRNA-1;_AED=0.41;_eAED=0.74;_QI=0|0|0|1|1|1|3|0|218 |
| chr8_1 | exon | 63316016 | 63316083 | 63316016 | ID=Msa1206350-mRNA-1:exon:20575;Parent=Msa1206350-mRNA-1 |
| chr8_1 | exon | 63315693 | 63315920 | 63315693 | ID=Msa1206350-mRNA-1:exon:20574;Parent=Msa1206350-mRNA-1 |
| chr8_1 | exon | 63315025 | 63315385 | 63315025 | ID=Msa1206350-mRNA-1:exon:20573;Parent=Msa1206350-mRNA-1 |
| chr8_1 | CDS | 63316016 | 63316083 | 63316016 | ID=Msa1206350-mRNA-1:cds;Parent=Msa1206350-mRNA-1 |
| chr8_1 | CDS | 63315693 | 63315920 | 63315693 | ID=Msa1206350-mRNA-1:cds;Parent=Msa1206350-mRNA-1 |
| chr8_1 | CDS | 63315025 | 63315385 | 63315025 | ID=Msa1206350-mRNA-1:cds;Parent=Msa1206350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
