AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078900 MtrunA17_Chr1g0189681 80.000 50 10 0 106 155 177 226 2.79e-20 87.8
Msa0078900 MtrunA17_Chr1g0189681 84.444 45 7 0 152 196 292 336 6.70e-19 84.0
Msa0078900 MtrunA17_Chr6g0456641 29.655 145 52 1 106 200 106 250 2.65e-14 71.2
Msa0078900 MtrunA17_Chr6g0456541 56.604 53 23 0 103 155 457 509 2.69e-12 65.9
Msa0078900 MtrunA17_Chr6g0456561 56.604 53 23 0 103 155 446 498 4.41e-12 65.5
Msa0078900 MtrunA17_Chr7g0218781 58.000 50 21 0 106 155 394 443 1.00e-11 64.3
Msa0078900 MtrunA17_Chr6g0456571 56.000 50 22 0 106 155 396 445 1.07e-11 64.3
Msa0078900 MtrunA17_Chr7g0219071 39.773 88 35 1 106 193 443 512 1.22e-11 63.9
Msa0078900 MtrunA17_Chr4g0018941 58.824 51 20 1 106 155 359 409 2.89e-11 62.8
Msa0078900 MtrunA17_Chr1g0189691 43.636 55 23 1 152 206 2 48 4.55e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 52 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAACATTGATCCATATT+GGG 0.256708 1_2:+56590212 Msa0078900:CDS
TTGTAAACATTGATCCATAT+TGG 0.286933 1_2:+56590211 Msa0078900:CDS
CACTCGAGATATTTCCTTGA+TGG 0.293905 1_2:+56590177 Msa0078900:CDS
TCTTCATTTCTCTCCGCTTC+AGG 0.294757 1_2:+56589097 Msa0078900:CDS
GGTGAAACCTTCAAATCCTT+TGG 0.316954 1_2:+56589026 Msa0078900:CDS
CGCTTGATAGGTTTAGAATA+TGG 0.329607 1_2:+56590334 Msa0078900:intron
TTATACTTCTTACCCCAATA+TGG 0.333060 1_2:-56590225 None:intergenic
AATACTTTCCAAAGCTGTTA+AGG 0.338125 1_2:-56590386 None:intergenic
AAACCAGGGTTTGCTTATCT+TGG 0.353049 1_2:+56590466 Msa0078900:CDS
AGTGAACTTGTTGGTGTTGT+TGG 0.356391 1_2:+56589767 Msa0078900:CDS
CACTCACCCAAAGGATTTGA+AGG 0.360881 1_2:-56589033 None:intergenic
TGGAGCAACCTTAACAGCTT+TGG 0.376313 1_2:+56590378 Msa0078900:CDS
GAGAAGATAAGAAAGTTAAC+TGG 0.381599 1_2:+56590669 Msa0078900:CDS
CAGAGTTCTACTTTGTTAAG+TGG 0.395921 1_2:-56589201 None:intergenic
AGGAAATATCTCGAGTGATA+TGG 0.399023 1_2:-56590171 None:intergenic
TTGTGATAAGGAAGGTGCTT+TGG 0.403486 1_2:+56590647 Msa0078900:CDS
GTGAAACCTTCAAATCCTTT+GGG 0.426258 1_2:+56589027 Msa0078900:CDS
GTAACTTGGCACTCTATGAA+TGG 0.450505 1_2:+56589824 Msa0078900:CDS
AGGATTCATAGTAGAAGTTA+AGG 0.451202 1_2:+56590729 Msa0078900:CDS
CTTCAAATCCTTTGGGTGAG+TGG 0.466154 1_2:+56589034 Msa0078900:CDS
TTGGTGTTGTTGGTGATCCA+TGG 0.469297 1_2:+56589777 Msa0078900:CDS
TCTGACTCTAGTTATGACTT+TGG 0.479169 1_2:+56590126 Msa0078900:CDS
GAGTAGACCTTGGAGAAGAA+AGG 0.482739 1_2:+56589625 Msa0078900:intron
TTTGTAGAGAATTTGTGATA+AGG 0.486578 1_2:+56590635 Msa0078900:intron
AGAAGGAATGAATATGTATG+AGG 0.491603 1_2:+56590435 Msa0078900:CDS
GAAGATGACGAGAGGAATCA+AGG 0.500975 1_2:-56589076 None:intergenic
AAATCCTTTGGGTGAGTGGT+TGG 0.505191 1_2:+56589038 Msa0078900:CDS
ACCTTGGAGAAGAAAGGATT+CGG 0.505385 1_2:+56589631 Msa0078900:CDS
TAGAGAATTTGTGATAAGGA+AGG 0.511186 1_2:+56590639 Msa0078900:intron
ACCGAATCCTTTCTTCTCCA+AGG 0.522595 1_2:-56589632 None:intergenic
GACGCCAATGTTGTTACTGT+TGG 0.529324 1_2:+56590358 Msa0078900:CDS
AGTAAGAGACGGGTAGGCGA+AGG 0.549891 1_2:-56589126 None:intergenic
TTTATATGATCAGGAATATG+GGG 0.551445 1_2:+56590078 Msa0078900:intron
GTAAACATTGATCCATATTG+GGG 0.577879 1_2:+56590213 Msa0078900:CDS
AGCATTGATAGTGAACTTGT+TGG 0.579501 1_2:+56589758 Msa0078900:intron
CAAGAACAGCAATACCATCA+AGG 0.580016 1_2:-56590191 None:intergenic
GCGAAGGAGTTAACCTGAAG+CGG 0.584261 1_2:-56589110 None:intergenic
ATGATTGAATGAGTAAGAGA+CGG 0.586872 1_2:-56589137 None:intergenic
TGATTGAATGAGTAAGAGAC+GGG 0.590176 1_2:-56589136 None:intergenic
ATGTGGTGGCATGTAAGAGA+AGG 0.604058 1_2:+56590418 Msa0078900:CDS
TGAATGAGTAAGAGACGGGT+AGG 0.605038 1_2:-56589132 None:intergenic
GGAGGAGTTGTTACAAAACA+AGG 0.618888 1_2:+56590099 Msa0078900:CDS
AACACCAACCACTCACCCAA+AGG 0.626193 1_2:-56589042 None:intergenic
GAAATGAAGAAGATGACGAG+AGG 0.627048 1_2:-56589084 None:intergenic
ATATGATCAGGAATATGGGG+AGG 0.640187 1_2:+56590081 Msa0078900:intron
TGCTCCAACAGTAACAACAT+TGG 0.651685 1_2:-56590362 None:intergenic
AAAGTATTAGAGCTCAAATG+TGG 0.658452 1_2:+56590401 Msa0078900:CDS
GTATTAGAGCTCAAATGTGG+TGG 0.662975 1_2:+56590404 Msa0078900:CDS
GCACCAAGATAAGCAAACCC+TGG 0.666993 1_2:-56590469 None:intergenic
CATTGAGTAATCCATCGTGG+AGG 0.703515 1_2:+56590709 Msa0078900:CDS
CTACTATGAATCCTCCACGA+TGG 0.712044 1_2:-56590720 None:intergenic
ATTCATTGAGTAATCCATCG+TGG 0.717546 1_2:+56590706 Msa0078900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATGAAATTGTTT+CGG + chr1_2:56589859-56589878 Msa0078900:intron 10.0%
!! ATTATATTATGAAATTGTTT+CGG + chr1_2:56589859-56589878 Msa0078900:intron 10.0%
!!! AAATGGATTTTTATATGATC+AGG + chr1_2:56590069-56590088 Msa0078900:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG + chr1_2:56590076-56590095 Msa0078900:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG + chr1_2:56590077-56590096 Msa0078900:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG - chr1_2:56590537-56590556 None:intergenic 20.0%
!!! AAATGGATTTTTATATGATC+AGG + chr1_2:56590069-56590088 Msa0078900:intron 20.0%
!!! TTTTTATATGATCAGGAATA+TGG + chr1_2:56590076-56590095 Msa0078900:intron 20.0%
!!! TTTTATATGATCAGGAATAT+GGG + chr1_2:56590077-56590096 Msa0078900:intron 20.0%
!!! AAAACAAACACTTTTGAAAT+AGG - chr1_2:56590537-56590556 None:intergenic 20.0%
! ATGTAAATGACGAAGAAAAT+GGG - chr1_2:56589231-56589250 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG - chr1_2:56589475-56589494 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG + chr1_2:56589475-56589494 Msa0078900:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG + chr1_2:56589906-56589925 Msa0078900:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG + chr1_2:56589926-56589945 Msa0078900:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG + chr1_2:56589942-56589961 Msa0078900:intron 25.0%
!! TTCAAATACTTCCTAACTTT+TGG - chr1_2:56590010-56590029 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG + chr1_2:56590078-56590097 Msa0078900:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG + chr1_2:56590211-56590230 Msa0078900:CDS 25.0%
! TGTAAACATTGATCCATATT+GGG + chr1_2:56590212-56590231 Msa0078900:CDS 25.0%
! TTTGTAGAGAATTTGTGATA+AGG + chr1_2:56590635-56590654 Msa0078900:intron 25.0%
! ATGTAAATGACGAAGAAAAT+GGG - chr1_2:56589231-56589250 None:intergenic 25.0%
! GTGATAATTAATGTAACCAT+AGG - chr1_2:56589475-56589494 None:intergenic 25.0%
! ATGGTTACATTAATTATCAC+CGG + chr1_2:56589475-56589494 Msa0078900:intron 25.0%
!! TAAATTCATCTGAGATAACA+AGG + chr1_2:56589906-56589925 Msa0078900:intron 25.0%
!!! AGGACTTCATCTTATTTTTA+TGG + chr1_2:56589926-56589945 Msa0078900:intron 25.0%
! TTTATGGATAATTGATTGCA+AGG + chr1_2:56589942-56589961 Msa0078900:intron 25.0%
!! TTCAAATACTTCCTAACTTT+TGG - chr1_2:56590010-56590029 None:intergenic 25.0%
! TTTATATGATCAGGAATATG+GGG + chr1_2:56590078-56590097 Msa0078900:intron 25.0%
! TTGTAAACATTGATCCATAT+TGG + chr1_2:56590211-56590230 Msa0078900:CDS 25.0%
! TGTAAACATTGATCCATATT+GGG + chr1_2:56590212-56590231 Msa0078900:CDS 25.0%
! TTTGTAGAGAATTTGTGATA+AGG + chr1_2:56590635-56590654 Msa0078900:intron 25.0%
ATGATTGAATGAGTAAGAGA+CGG - chr1_2:56589140-56589159 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG - chr1_2:56589232-56589251 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG + chr1_2:56589371-56589390 Msa0078900:intron 30.0%
TTAGGATCTCCATAGTTTAA+TGG + chr1_2:56589405-56589424 Msa0078900:intron 30.0%
CAAAACTATCCTAATCTATG+AGG - chr1_2:56589511-56589530 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG + chr1_2:56589996-56590015 Msa0078900:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG + chr1_2:56590052-56590071 Msa0078900:intron 30.0%
GTAAACATTGATCCATATTG+GGG + chr1_2:56590213-56590232 Msa0078900:CDS 30.0%
TTATACTTCTTACCCCAATA+TGG - chr1_2:56590228-56590247 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG - chr1_2:56590306-56590325 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG - chr1_2:56590389-56590408 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG + chr1_2:56590401-56590420 Msa0078900:CDS 30.0%
AGAAGGAATGAATATGTATG+AGG + chr1_2:56590435-56590454 Msa0078900:CDS 30.0%
! TATGAGGAAGATTTTAAACC+AGG + chr1_2:56590451-56590470 Msa0078900:CDS 30.0%
! ATGAGGAAGATTTTAAACCA+GGG + chr1_2:56590452-56590471 Msa0078900:CDS 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG - chr1_2:56590528-56590547 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG + chr1_2:56590555-56590574 Msa0078900:intron 30.0%
TAGAGAATTTGTGATAAGGA+AGG + chr1_2:56590639-56590658 Msa0078900:intron 30.0%
GAGAAGATAAGAAAGTTAAC+TGG + chr1_2:56590669-56590688 Msa0078900:CDS 30.0%
!!! AAGTTAACTGGTTTTGATGA+TGG + chr1_2:56590681-56590700 Msa0078900:CDS 30.0%
ATGATTGAATGAGTAAGAGA+CGG - chr1_2:56589140-56589159 None:intergenic 30.0%
GATGTAAATGACGAAGAAAA+TGG - chr1_2:56589232-56589251 None:intergenic 30.0%
!!! ATTGTTTCTGATGCGTTTTA+TGG + chr1_2:56589371-56589390 Msa0078900:intron 30.0%
TTAGGATCTCCATAGTTTAA+TGG + chr1_2:56589405-56589424 Msa0078900:intron 30.0%
CAAAACTATCCTAATCTATG+AGG - chr1_2:56589511-56589530 None:intergenic 30.0%
TTGATGTGATTCCAAAAGTT+AGG + chr1_2:56589996-56590015 Msa0078900:intron 30.0%
GATGGAACTTTCAAAGAAAA+TGG + chr1_2:56590052-56590071 Msa0078900:intron 30.0%
GTAAACATTGATCCATATTG+GGG + chr1_2:56590213-56590232 Msa0078900:CDS 30.0%
TTATACTTCTTACCCCAATA+TGG - chr1_2:56590228-56590247 None:intergenic 30.0%
AGTATGCATTAACAACTTCA+CGG - chr1_2:56590306-56590325 None:intergenic 30.0%
AATACTTTCCAAAGCTGTTA+AGG - chr1_2:56590389-56590408 None:intergenic 30.0%
! AAAGTATTAGAGCTCAAATG+TGG + chr1_2:56590401-56590420 Msa0078900:CDS 30.0%
AGAAGGAATGAATATGTATG+AGG + chr1_2:56590435-56590454 Msa0078900:CDS 30.0%
! TATGAGGAAGATTTTAAACC+AGG + chr1_2:56590451-56590470 Msa0078900:CDS 30.0%
! ATGAGGAAGATTTTAAACCA+GGG + chr1_2:56590452-56590471 Msa0078900:CDS 30.0%
!!! ACTTTTGAAATAGGCAACAA+TGG - chr1_2:56590528-56590547 None:intergenic 30.0%
TTCTGATGTTGAATATGTGA+AGG + chr1_2:56590555-56590574 Msa0078900:intron 30.0%
TAGAGAATTTGTGATAAGGA+AGG + chr1_2:56590639-56590658 Msa0078900:intron 30.0%
GAGAAGATAAGAAAGTTAAC+TGG + chr1_2:56590669-56590688 Msa0078900:CDS 30.0%
!!! AAGTTAACTGGTTTTGATGA+TGG + chr1_2:56590681-56590700 Msa0078900:CDS 30.0%
GTGAAACCTTCAAATCCTTT+GGG + chr1_2:56589027-56589046 Msa0078900:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG - chr1_2:56589139-56589158 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG - chr1_2:56589204-56589223 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG - chr1_2:56589295-56589314 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG - chr1_2:56589296-56589315 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG - chr1_2:56589312-56589331 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG - chr1_2:56589330-56589349 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG - chr1_2:56589331-56589350 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG - chr1_2:56589337-56589356 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG - chr1_2:56589338-56589357 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG + chr1_2:56589387-56589406 Msa0078900:intron 35.0%
CTAACTAGGCCATTAAACTA+TGG - chr1_2:56589417-56589436 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG + chr1_2:56589421-56589440 Msa0078900:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG + chr1_2:56589758-56589777 Msa0078900:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG - chr1_2:56589813-56589832 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG + chr1_2:56589946-56589965 Msa0078900:intron 35.0%
TGAAAGAGATCATTGAGCTT+TGG + chr1_2:56590026-56590045 Msa0078900:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG + chr1_2:56590126-56590145 Msa0078900:CDS 35.0%
AGGAAATATCTCGAGTGATA+TGG - chr1_2:56590174-56590193 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG - chr1_2:56590305-56590324 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG + chr1_2:56590334-56590353 Msa0078900:intron 35.0%
GAATATGTGAAGGAACTTGT+CGG + chr1_2:56590565-56590584 Msa0078900:intron 35.0%
AATATGTGAAGGAACTTGTC+GGG + chr1_2:56590566-56590585 Msa0078900:intron 35.0%
ATTCATTGAGTAATCCATCG+TGG + chr1_2:56590706-56590725 Msa0078900:CDS 35.0%
GTGAAACCTTCAAATCCTTT+GGG + chr1_2:56589027-56589046 Msa0078900:CDS 35.0%
TGATTGAATGAGTAAGAGAC+GGG - chr1_2:56589139-56589158 None:intergenic 35.0%
CAGAGTTCTACTTTGTTAAG+TGG - chr1_2:56589204-56589223 None:intergenic 35.0%
!! TGCAGGTGATAGTGATTTTA+GGG - chr1_2:56589295-56589314 None:intergenic 35.0%
!! TTGCAGGTGATAGTGATTTT+AGG - chr1_2:56589296-56589315 None:intergenic 35.0%
TAGGGTTTAACAAACATTGC+AGG - chr1_2:56589312-56589331 None:intergenic 35.0%
! GTTGATTGATTCAGGGTTTA+GGG - chr1_2:56589330-56589349 None:intergenic 35.0%
! AGTTGATTGATTCAGGGTTT+AGG - chr1_2:56589331-56589350 None:intergenic 35.0%
!! GAGCTAAGTTGATTGATTCA+GGG - chr1_2:56589337-56589356 None:intergenic 35.0%
!! TGAGCTAAGTTGATTGATTC+AGG - chr1_2:56589338-56589357 None:intergenic 35.0%
TTTATGGCCTAGTTAGACTT+AGG + chr1_2:56589387-56589406 Msa0078900:intron 35.0%
CTAACTAGGCCATTAAACTA+TGG - chr1_2:56589417-56589436 None:intergenic 35.0%
TTAATGGCCTAGTTAGACTT+AGG + chr1_2:56589421-56589440 Msa0078900:intron 35.0%
!! AGCATTGATAGTGAACTTGT+TGG + chr1_2:56589758-56589777 Msa0078900:intron 35.0%
CCAAGTTACAAAAACAGGAT+CGG - chr1_2:56589813-56589832 None:intergenic 35.0%
TGGATAATTGATTGCAAGGT+TGG + chr1_2:56589946-56589965 Msa0078900:intron 35.0%
TGAAAGAGATCATTGAGCTT+TGG + chr1_2:56590026-56590045 Msa0078900:intron 35.0%
TCTGACTCTAGTTATGACTT+TGG + chr1_2:56590126-56590145 Msa0078900:CDS 35.0%
AGGAAATATCTCGAGTGATA+TGG - chr1_2:56590174-56590193 None:intergenic 35.0%
GTATGCATTAACAACTTCAC+GGG - chr1_2:56590305-56590324 None:intergenic 35.0%
! CGCTTGATAGGTTTAGAATA+TGG + chr1_2:56590334-56590353 Msa0078900:intron 35.0%
GAATATGTGAAGGAACTTGT+CGG + chr1_2:56590565-56590584 Msa0078900:intron 35.0%
AATATGTGAAGGAACTTGTC+GGG + chr1_2:56590566-56590585 Msa0078900:intron 35.0%
ATTCATTGAGTAATCCATCG+TGG + chr1_2:56590706-56590725 Msa0078900:CDS 35.0%
GGTGAAACCTTCAAATCCTT+TGG + chr1_2:56589026-56589045 Msa0078900:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG - chr1_2:56589087-56589106 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_2:56589397-56589416 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_2:56589397-56589416 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG + chr1_2:56589499-56589518 Msa0078900:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG + chr1_2:56589584-56589603 Msa0078900:intron 40.0%
TGTTTGGATTGAGTAGACCT+TGG + chr1_2:56589615-56589634 Msa0078900:intron 40.0%
ACCTTGGAGAAGAAAGGATT+CGG + chr1_2:56589631-56589650 Msa0078900:CDS 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG + chr1_2:56589767-56589786 Msa0078900:CDS 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG + chr1_2:56589810-56589829 Msa0078900:CDS 40.0%
GAGTGCCAAGTTACAAAAAC+AGG - chr1_2:56589818-56589837 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG + chr1_2:56589824-56589843 Msa0078900:CDS 40.0%
GTTCCTTTGAACGATGTTGA+GGG + chr1_2:56589881-56589900 Msa0078900:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG + chr1_2:56590034-56590053 Msa0078900:intron 40.0%
ATATGATCAGGAATATGGGG+AGG + chr1_2:56590081-56590100 Msa0078900:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG + chr1_2:56590099-56590118 Msa0078900:CDS 40.0%
CACTCGAGATATTTCCTTGA+TGG + chr1_2:56590177-56590196 Msa0078900:CDS 40.0%
CAAGAACAGCAATACCATCA+AGG - chr1_2:56590194-56590213 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG + chr1_2:56590248-56590267 Msa0078900:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG + chr1_2:56590322-56590341 Msa0078900:intron 40.0%
TGCTCCAACAGTAACAACAT+TGG - chr1_2:56590365-56590384 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG + chr1_2:56590404-56590423 Msa0078900:CDS 40.0%
! AAACCAGGGTTTGCTTATCT+TGG + chr1_2:56590466-56590485 Msa0078900:CDS 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG + chr1_2:56590485-56590504 Msa0078900:intron 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG + chr1_2:56590647-56590666 Msa0078900:CDS 40.0%
GGTGAAACCTTCAAATCCTT+TGG + chr1_2:56589026-56589045 Msa0078900:CDS 40.0%
GAAATGAAGAAGATGACGAG+AGG - chr1_2:56589087-56589106 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_2:56589397-56589416 None:intergenic 40.0%
TGGAGATCCTAAGTCTAACT+AGG - chr1_2:56589397-56589416 None:intergenic 40.0%
GTTGATGTGCCTCATAGATT+AGG + chr1_2:56589499-56589518 Msa0078900:intron 40.0%
! GTTTGTTACACTGTGTCTAG+TGG + chr1_2:56589584-56589603 Msa0078900:intron 40.0%
TGTTTGGATTGAGTAGACCT+TGG + chr1_2:56589615-56589634 Msa0078900:intron 40.0%
ACCTTGGAGAAGAAAGGATT+CGG + chr1_2:56589631-56589650 Msa0078900:CDS 40.0%
!! AGTGAACTTGTTGGTGTTGT+TGG + chr1_2:56589767-56589786 Msa0078900:CDS 40.0%
!!! CCGATCCTGTTTTTGTAACT+TGG + chr1_2:56589810-56589829 Msa0078900:CDS 40.0%
GAGTGCCAAGTTACAAAAAC+AGG - chr1_2:56589818-56589837 None:intergenic 40.0%
GTAACTTGGCACTCTATGAA+TGG + chr1_2:56589824-56589843 Msa0078900:CDS 40.0%
GTTCCTTTGAACGATGTTGA+GGG + chr1_2:56589881-56589900 Msa0078900:intron 40.0%
!! ATCATTGAGCTTTGGCTTGA+TGG + chr1_2:56590034-56590053 Msa0078900:intron 40.0%
ATATGATCAGGAATATGGGG+AGG + chr1_2:56590081-56590100 Msa0078900:intron 40.0%
GGAGGAGTTGTTACAAAACA+AGG + chr1_2:56590099-56590118 Msa0078900:CDS 40.0%
CACTCGAGATATTTCCTTGA+TGG + chr1_2:56590177-56590196 Msa0078900:CDS 40.0%
CAAGAACAGCAATACCATCA+AGG - chr1_2:56590194-56590213 None:intergenic 40.0%
! GCGTCAAACTTGTTCACTTA+TGG + chr1_2:56590248-56590267 Msa0078900:intron 40.0%
TACTATTCTGCTCGCTTGAT+AGG + chr1_2:56590322-56590341 Msa0078900:intron 40.0%
TGCTCCAACAGTAACAACAT+TGG - chr1_2:56590365-56590384 None:intergenic 40.0%
GTATTAGAGCTCAAATGTGG+TGG + chr1_2:56590404-56590423 Msa0078900:CDS 40.0%
! AAACCAGGGTTTGCTTATCT+TGG + chr1_2:56590466-56590485 Msa0078900:CDS 40.0%
!! TTGGTGCTAGAGACAATGTA+TGG + chr1_2:56590485-56590504 Msa0078900:intron 40.0%
!! TTGTGATAAGGAAGGTGCTT+TGG + chr1_2:56590647-56590666 Msa0078900:CDS 40.0%
CACTCACCCAAAGGATTTGA+AGG - chr1_2:56589036-56589055 None:intergenic 45.0%
CTTCAAATCCTTTGGGTGAG+TGG + chr1_2:56589034-56589053 Msa0078900:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG + chr1_2:56589038-56589057 Msa0078900:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG - chr1_2:56589079-56589098 None:intergenic 45.0%
TCTTCATTTCTCTCCGCTTC+AGG + chr1_2:56589097-56589116 Msa0078900:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG - chr1_2:56589135-56589154 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG - chr1_2:56589463-56589482 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG - chr1_2:56589497-56589516 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG + chr1_2:56589599-56589618 Msa0078900:intron 45.0%
GAGTAGACCTTGGAGAAGAA+AGG + chr1_2:56589625-56589644 Msa0078900:intron 45.0%
ACCGAATCCTTTCTTCTCCA+AGG - chr1_2:56589635-56589654 None:intergenic 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG + chr1_2:56589777-56589796 Msa0078900:CDS 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG - chr1_2:56589797-56589816 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG + chr1_2:56589880-56589899 Msa0078900:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG - chr1_2:56589887-56589906 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG + chr1_2:56590358-56590377 Msa0078900:CDS 45.0%
TGGAGCAACCTTAACAGCTT+TGG + chr1_2:56590378-56590397 Msa0078900:CDS 45.0%
ATGTGGTGGCATGTAAGAGA+AGG + chr1_2:56590418-56590437 Msa0078900:CDS 45.0%
CATTGAGTAATCCATCGTGG+AGG + chr1_2:56590709-56590728 Msa0078900:CDS 45.0%
CTACTATGAATCCTCCACGA+TGG - chr1_2:56590723-56590742 None:intergenic 45.0%
CACTCACCCAAAGGATTTGA+AGG - chr1_2:56589036-56589055 None:intergenic 45.0%
CTTCAAATCCTTTGGGTGAG+TGG + chr1_2:56589034-56589053 Msa0078900:CDS 45.0%
AAATCCTTTGGGTGAGTGGT+TGG + chr1_2:56589038-56589057 Msa0078900:CDS 45.0%
GAAGATGACGAGAGGAATCA+AGG - chr1_2:56589079-56589098 None:intergenic 45.0%
TCTTCATTTCTCTCCGCTTC+AGG + chr1_2:56589097-56589116 Msa0078900:CDS 45.0%
TGAATGAGTAAGAGACGGGT+AGG - chr1_2:56589135-56589154 None:intergenic 45.0%
GTAACCATAGGTGTCAGACT+CGG - chr1_2:56589463-56589482 None:intergenic 45.0%
TCTATGAGGCACATCAACAC+CGG - chr1_2:56589497-56589516 None:intergenic 45.0%
TCTAGTGGTGAAGCTGTGTT+TGG + chr1_2:56589599-56589618 Msa0078900:intron 45.0%
GAGTAGACCTTGGAGAAGAA+AGG + chr1_2:56589625-56589644 Msa0078900:intron 45.0%
ACCGAATCCTTTCTTCTCCA+AGG - chr1_2:56589635-56589654 None:intergenic 45.0%
!! TTGGTGTTGTTGGTGATCCA+TGG + chr1_2:56589777-56589796 Msa0078900:CDS 45.0%
!! GGATCGGTTTTCAAAAGCCA+TGG - chr1_2:56589797-56589816 None:intergenic 45.0%
GGTTCCTTTGAACGATGTTG+AGG + chr1_2:56589880-56589899 Msa0078900:intron 45.0%
AGTCCCTCAACATCGTTCAA+AGG - chr1_2:56589887-56589906 None:intergenic 45.0%
GACGCCAATGTTGTTACTGT+TGG + chr1_2:56590358-56590377 Msa0078900:CDS 45.0%
TGGAGCAACCTTAACAGCTT+TGG + chr1_2:56590378-56590397 Msa0078900:CDS 45.0%
ATGTGGTGGCATGTAAGAGA+AGG + chr1_2:56590418-56590437 Msa0078900:CDS 45.0%
CATTGAGTAATCCATCGTGG+AGG + chr1_2:56590709-56590728 Msa0078900:CDS 45.0%
CTACTATGAATCCTCCACGA+TGG - chr1_2:56590723-56590742 None:intergenic 45.0%
AACACCAACCACTCACCCAA+AGG - chr1_2:56589045-56589064 None:intergenic 50.0%
GCGAAGGAGTTAACCTGAAG+CGG - chr1_2:56589113-56589132 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG - chr1_2:56590472-56590491 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG + chr1_2:56590570-56590589 Msa0078900:intron 50.0%
GTGAAGGAACTTGTCGGGTT+GGG + chr1_2:56590571-56590590 Msa0078900:intron 50.0%
AACACCAACCACTCACCCAA+AGG - chr1_2:56589045-56589064 None:intergenic 50.0%
GCGAAGGAGTTAACCTGAAG+CGG - chr1_2:56589113-56589132 None:intergenic 50.0%
GCACCAAGATAAGCAAACCC+TGG - chr1_2:56590472-56590491 None:intergenic 50.0%
TGTGAAGGAACTTGTCGGGT+TGG + chr1_2:56590570-56590589 Msa0078900:intron 50.0%
GTGAAGGAACTTGTCGGGTT+GGG + chr1_2:56590571-56590590 Msa0078900:intron 50.0%
AGTAAGAGACGGGTAGGCGA+AGG - chr1_2:56589129-56589148 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG - chr1_2:56589459-56589478 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG + chr1_2:56590586-56590605 Msa0078900:intron 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG + chr1_2:56590587-56590606 Msa0078900:intron 55.0%
AGTAAGAGACGGGTAGGCGA+AGG - chr1_2:56589129-56589148 None:intergenic 55.0%
CCATAGGTGTCAGACTCGGA+CGG - chr1_2:56589459-56589478 None:intergenic 55.0%
GGGTTGGGACTGCTTGGTTT+GGG + chr1_2:56590586-56590605 Msa0078900:intron 55.0%
! GGTTGGGACTGCTTGGTTTG+GGG + chr1_2:56590587-56590606 Msa0078900:intron 55.0%
! GTCAGACTCGGACGGTGCTA+TGG - chr1_2:56589451-56589470 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG + chr1_2:56589456-56589475 Msa0078900:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG + chr1_2:56590580-56590599 Msa0078900:intron 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG + chr1_2:56590585-56590604 Msa0078900:intron 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG + chr1_2:56590591-56590610 Msa0078900:intron 60.0%
! GTCAGACTCGGACGGTGCTA+TGG - chr1_2:56589451-56589470 None:intergenic 60.0%
CCGTCCGAGTCTGACACCTA+TGG + chr1_2:56589456-56589475 Msa0078900:intron 60.0%
!! CTTGTCGGGTTGGGACTGCT+TGG + chr1_2:56590580-56590599 Msa0078900:intron 60.0%
! CGGGTTGGGACTGCTTGGTT+TGG + chr1_2:56590585-56590604 Msa0078900:intron 60.0%
!! GGGACTGCTTGGTTTGGGGA+AGG + chr1_2:56590591-56590610 Msa0078900:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56589024 56590749 56589024 ID=Msa0078900;Name=Msa0078900
chr1_2 mRNA 56589024 56590749 56589024 ID=Msa0078900-mRNA-1;Parent=Msa0078900;Name=Msa0078900-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|0.6|0.66|6|0|239
chr1_2 exon 56589024 56589212 56589024 ID=Msa0078900-mRNA-1:exon:17767;Parent=Msa0078900-mRNA-1
chr1_2 exon 56589631 56589665 56589631 ID=Msa0078900-mRNA-1:exon:17768;Parent=Msa0078900-mRNA-1
chr1_2 exon 56589760 56589845 56589760 ID=Msa0078900-mRNA-1:exon:17769;Parent=Msa0078900-mRNA-1
chr1_2 exon 56590091 56590234 56590091 ID=Msa0078900-mRNA-1:exon:17770;Parent=Msa0078900-mRNA-1
chr1_2 exon 56590344 56590501 56590344 ID=Msa0078900-mRNA-1:exon:17771;Parent=Msa0078900-mRNA-1
chr1_2 exon 56590642 56590749 56590642 ID=Msa0078900-mRNA-1:exon:17772;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56589024 56589212 56589024 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56589631 56589665 56589631 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56589760 56589845 56589760 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56590091 56590234 56590091 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56590344 56590501 56590344 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
chr1_2 CDS 56590642 56590749 56590642 ID=Msa0078900-mRNA-1:cds;Parent=Msa0078900-mRNA-1
Gene Sequence

>Msa0078900

ATGGTGAAACCTTCAAATCCTTTGGGTGAGTGGTTGGTGTTATCACTGCGTTCCTTGATTCCTCTCGTCATCTTCTTCATTTCTCTCCGCTTCAGGTTAACTCCTTCGCCTACCCGTCTCTTACTCATTCAATCATTTGTAAGTCAGATTCTTTTTTTGCTAAGAAATTTCAACAAACCACTTAACAAAACCTTGGAGAAGAAAGGATTCGGTGATTTGTTATTCATTGATAGTGAACTTGTTGGTGTTGTTGGTGATCCATGGCTTTTGAAAACCGATCCTGTTTTTGTAACTTGGCACTCTATGAATGGAATATGGGGAGGAGTTGTTACAAAACAAGGATGTTCTGACTCTAGTTATGACTTTGGATCTGAATTTTATACTTCTCAACCATATCACTCGAGATATTTCCTTGATGGTATTGCTGTTCTTGTAAACATTGATCCATATTGGGGTTTAGAATATGGTGACGCCAATGTTGTTACTGTTGGAGCAACCTTAACAGCTTTGGAAAGTATTAGAGCTCAAATGTGGTGGCATGTAAGAGAAGGAATGAATATGTATGAGGAAGATTTTAAACCAGGGTTTGCTTATCTTGGTGCTAGAGACAATAGAATTTGTGATAAGGAAGGTGCTTTGGAGAAGATAAGAAAGTTAACTGGTTTTGATGATGGAAATTCATTGAGTAATCCATCGTGGAGGATTCATAGTAGAAGTTAA

Protein sequence

>Msa0078900

MVKPSNPLGEWLVLSLRSLIPLVIFFISLRFRLTPSPTRLLLIQSFVSQILFLLRNFNKPLNKTLEKKGFGDLLFIDSELVGVVGDPWLLKTDPVFVTWHSMNGIWGGVVTKQGCSDSSYDFGSEFYTSQPYHSRYFLDGIAVLVNIDPYWGLEYGDANVVTVGATLTALESIRAQMWWHVREGMNMYEEDFKPGFAYLGARDNRICDKEGALEKIRKLTGFDDGNSLSNPSWRIHSRS*