AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206540 MtrunA17_Chr4g0055611 97.048 542 16 0 1 542 1 542 0.0 1088
Msa1206540 MtrunA17_Chr5g0399781 76.680 253 53 4 1 250 1 250 2.36e-127 372
Msa1206540 MtrunA17_Chr5g0399791 61.826 241 80 2 282 522 6 234 1.33e-94 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206540 AT4G17570.3 50.752 532 227 14 1 518 1 511 3.28e-144 426
Msa1206540 AT4G17570.1 50.188 532 226 15 1 518 1 507 2.58e-139 413
Msa1206540 AT4G17570.2 49.807 518 225 14 15 518 27 523 9.62e-132 394
Msa1206540 AT5G47140.1 46.341 533 205 13 1 518 1 467 3.81e-119 360

Find 160 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGTCTTGCAGTCTTC+AGG 0.202442 8_1:+63621428 None:intergenic
CCACATGCATTGCATAAAAT+TGG 0.209606 8_1:+63624221 None:intergenic
GATGAACTAGACAATTATTT+TGG 0.224964 8_1:-63619969 Msa1206540:three_prime_UTR
TGAGCAACCAAGCTAGAATT+TGG 0.226392 8_1:+63620432 None:intergenic
GTCCTTCTCGGTCAGTAGTC+TGG 0.257209 8_1:-63623320 Msa1206540:CDS
TGGAATCCTTGATTATATTC+AGG 0.275290 8_1:+63624008 None:intergenic
TATCCTCATCGACAGCCTTT+TGG 0.278578 8_1:+63623988 None:intergenic
AGCTGCTCCTGTTGCAGTCT+TGG 0.279584 8_1:+63622916 None:intergenic
CATTCATCTGAAGAAATAAA+TGG 0.283008 8_1:-63620017 Msa1206540:three_prime_UTR
TAAGAACAAAGAAGTGAAAT+TGG 0.296795 8_1:-63624084 Msa1206540:CDS
CGGGGAGATACTTCAGTAAT+TGG 0.306286 8_1:+63621745 None:intergenic
GTCTTTGATATCTCTTTGTT+TGG 0.309370 8_1:-63621458 Msa1206540:CDS
AATCGTAAAATGTCATGTTT+TGG 0.310105 8_1:+63619933 None:intergenic
AGCTGGAAAACGTAATGATA+TGG 0.322982 8_1:-63620949 Msa1206540:CDS
GCTGCTCCTGTTGCAGTCTT+GGG 0.330451 8_1:+63622917 None:intergenic
TGGCATGAATTTCTCTTCTC+AGG 0.335218 8_1:-63622968 Msa1206540:CDS
TCAGAAAGCTGCGTTCAATT+TGG 0.340455 8_1:-63623927 Msa1206540:CDS
AACAGGATTGCTGTTGTTCA+TGG 0.347627 8_1:+63623205 None:intergenic
TTCAGAAGAAGCAGAGAAAC+AGG 0.359840 8_1:+63623188 None:intergenic
TGCTGGCCCAAGACTGCAAC+AGG 0.360278 8_1:-63622923 Msa1206540:CDS
AAGACTGCAAGACATGTAAA+AGG 0.374366 8_1:-63621424 Msa1206540:CDS
ATACTGCTAAATTTCCTGAT+AGG 0.379031 8_1:-63621716 Msa1206540:intron
GACATGGAAGCATGCTTATT+AGG 0.380641 8_1:-63623116 Msa1206540:CDS
AATGAGGCATATTCGTGTTA+TGG 0.381814 8_1:-63623018 Msa1206540:CDS
TAACCAGATTCTAACCTATC+AGG 0.386767 8_1:+63621702 None:intergenic
GTTCGATAGCTTTCAATTCA+AGG 0.390519 8_1:-63621519 Msa1206540:CDS
CATTTATTTCTTCAGATGAA+TGG 0.391400 8_1:+63620018 None:intergenic
TCCATAGTACATACTCTTCC+AGG 0.393390 8_1:+63620340 None:intergenic
ACGAATATGCCTCATTCATT+AGG 0.397130 8_1:+63623025 None:intergenic
TTTGATATCTCTTTGTTTGG+AGG 0.399259 8_1:-63621455 Msa1206540:CDS
TACATGTCTTGCAGTCTTCA+GGG 0.401258 8_1:+63621429 None:intergenic
GATAATGCTTATGCTGCATC+TGG 0.405843 8_1:-63624041 Msa1206540:CDS
ACAAGCAATAGATCAAGTTC+AGG 0.405979 8_1:-63623966 Msa1206540:CDS
TGGTTAATTTAGGTCCTTCT+CGG 0.410225 8_1:-63623332 Msa1206540:intron
CATTGCGAGGAAATGCAAAT+AGG 0.412981 8_1:+63620565 None:intergenic
TTGGTTATAAAGAGTTTAGT+TGG 0.418646 8_1:-63619897 Msa1206540:three_prime_UTR
TTGGCAATCCAAGCTCAATA+AGG 0.423805 8_1:+63620215 None:intergenic
ATTGCATAAAATTGGCTTCT+CGG 0.425605 8_1:+63624229 None:intergenic
CGTTGATGAGAGTTCGGATC+AGG 0.428748 8_1:-63620511 Msa1206540:CDS
AAACTTCGTTGATGAGAGTT+CGG 0.431868 8_1:-63620517 Msa1206540:CDS
GGAATCCTTGATTATATTCA+GGG 0.435974 8_1:+63624009 None:intergenic
TTTCTCTGCTTCTTCTGAAG+AGG 0.445798 8_1:-63623184 Msa1206540:CDS
GCTTCTTTGCCACCAGTGCC+AGG 0.446048 8_1:+63620618 None:intergenic
ACCTGGAAGAGTATGTACTA+TGG 0.448507 8_1:-63620341 Msa1206540:three_prime_UTR
AGAGAGAATGAGAGGAAGGA+AGG 0.449351 8_1:+63625942 None:intergenic
TTGCATAAAATTGGCTTCTC+GGG 0.450813 8_1:+63624230 None:intergenic
CCGATGGTCTCTGTTGAGAT+AGG 0.451064 8_1:-63623138 Msa1206540:CDS
ACTTGCAACCTTATTGAGCT+TGG 0.456245 8_1:-63620223 Msa1206540:three_prime_UTR
GAGCAACCAAGCTAGAATTT+GGG 0.456850 8_1:+63620433 None:intergenic
CAATGGTGGCTTGCACATGC+TGG 0.457641 8_1:-63620547 Msa1206540:CDS
CCCATCCAACTTGCATCCCT+TGG 0.461584 8_1:+63620196 None:intergenic
GTCCTTGAATAATCTTTACT+AGG 0.465381 8_1:-63620368 Msa1206540:exon
CTCTTCTCAGGGAGTTGCAA+AGG 0.470360 8_1:-63622956 Msa1206540:CDS
ACTGATATAAGCCATAAGTT+AGG 0.472108 8_1:-63625648 Msa1206540:five_prime_UTR
AACCTAGTAAAGATTATTCA+AGG 0.476906 8_1:+63620366 None:intergenic
CCTGCTCCCAAATTCTAGCT+TGG 0.478457 8_1:-63620439 Msa1206540:CDS
GAAAGCTGCGTTCAATTTGG+CGG 0.481959 8_1:-63623924 Msa1206540:CDS
CAACAATGAGGAGTCCCAAA+AGG 0.482639 8_1:-63620653 Msa1206540:CDS
TCCTTCTCGGTCAGTAGTCT+GGG 0.482866 8_1:-63623319 Msa1206540:CDS
GGAAGAGAAAAGAACATTGA+AGG 0.484756 8_1:+63625871 None:intergenic
GGTGGCAAAGAAGCTGTAGA+TGG 0.485633 8_1:-63620609 Msa1206540:CDS
GCCAGTGTAATCACTAAGCA+TGG 0.486056 8_1:+63622987 None:intergenic
AGAGAGAAAAGGAGAAGGGA+AGG 0.487756 8_1:+63625907 None:intergenic
AATTAGAGAGATTGATAAGT+GGG 0.487796 8_1:+63625818 None:intergenic
AAGGAGAAGGGAAGGTGCAA+TGG 0.490917 8_1:+63625915 None:intergenic
AAGAGTTTAGTTGGCAAGTG+AGG 0.492655 8_1:-63619888 Msa1206540:three_prime_UTR
TGTGGAAAAGAATTGTTAGA+TGG 0.494479 8_1:+63620471 None:intergenic
ATTATACTCCTTTACATGCT+CGG 0.500610 8_1:-63624166 Msa1206540:CDS
TGGATGAATAGCTTTATGAA+TGG 0.500950 8_1:-63619997 Msa1206540:three_prime_UTR
GAATAGCTTTATGAATGGAT+AGG 0.503442 8_1:-63619992 Msa1206540:three_prime_UTR
CTATTTGCATTTCCTCGCAA+TGG 0.505348 8_1:-63620564 Msa1206540:CDS
TGAGGAAAAGATTGAGACAT+GGG 0.507698 8_1:-63625539 Msa1206540:exon
TCTGATGAATGAGAGAGAAA+AGG 0.511143 8_1:+63625896 None:intergenic
CATAAAATTGGCTTCTCGGG+TGG 0.513655 8_1:+63624233 None:intergenic
TTGAGGATCAGAGAGTTTCA+AGG 0.515344 8_1:-63624127 Msa1206540:CDS
GCCAAGGGATGCAAGTTGGA+TGG 0.515362 8_1:-63620197 Msa1206540:three_prime_UTR
CAGAAAGGTGGAAACAAAGC+TGG 0.517998 8_1:-63620966 Msa1206540:CDS
AAAGAGAGAGAATGAGAGGA+AGG 0.520843 8_1:+63625938 None:intergenic
GAATGAGAGAGAAAAGGAGA+AGG 0.521112 8_1:+63625902 None:intergenic
AATAGCTTTATGAATGGATA+GGG 0.521302 8_1:-63619991 Msa1206540:three_prime_UTR
GGCATGAATTTCTCTTCTCA+GGG 0.528773 8_1:-63622967 Msa1206540:CDS
AATTCTAGCTTGGTTGCTCA+AGG 0.529989 8_1:-63620429 Msa1206540:CDS
CGAGTATACTGAGCTACTAC+TGG 0.530369 8_1:+63620401 None:intergenic
CGCAACATTACTTGATGCCA+CGG 0.532105 8_1:+63620917 None:intergenic
GGCACACCACTTTGGCGTAA+CGG 0.532158 8_1:-63624257 Msa1206540:CDS
CCAAGGGATGCAAGTTGGAT+GGG 0.536174 8_1:-63620196 Msa1206540:three_prime_UTR
TAAACAATGCCTAATGAATG+AGG 0.536919 8_1:-63623034 Msa1206540:CDS
AATGAGAGAGAAAAGGAGAA+GGG 0.538089 8_1:+63625903 None:intergenic
TTGCAATAGGCACACCACTT+TGG 0.540892 8_1:-63624265 Msa1206540:intron
TTTCAGAAACTTCTCGAGGA+AGG 0.544680 8_1:-63621482 Msa1206540:CDS
CCAAGCTAGAATTTGGGAGC+AGG 0.546142 8_1:+63620439 None:intergenic
ACCTGTCAAATCACTAGCAT+CGG 0.546237 8_1:+63623899 None:intergenic
GCAAAGGTCAGAAACTCTGC+TGG 0.547430 8_1:-63622940 Msa1206540:CDS
CTTATGGCTTATATCAGTAG+TGG 0.547743 8_1:+63625653 None:intergenic
GTATCTGTCCGAGCATGTAA+AGG 0.548439 8_1:+63624158 None:intergenic
AGAAGAATGCTTCAGACGCC+CGG 0.550473 8_1:+63623263 None:intergenic
AATGGTGTTTCTGTGGAAGG+AGG 0.551675 8_1:+63620036 None:intergenic
ACCGATGCTAGTGATTTGAC+AGG 0.552424 8_1:-63623900 Msa1206540:intron
ATGGAAAGAGAGAGAATGAG+AGG 0.556418 8_1:+63625934 None:intergenic
AACAATGAGGAGTCCCAAAA+GGG 0.557773 8_1:-63620652 Msa1206540:CDS
TTCACCCCTGAATATAATCA+AGG 0.559752 8_1:-63624014 Msa1206540:CDS
ACATTACTTGATGCCACGGC+AGG 0.560071 8_1:+63620921 None:intergenic
GATTGCCAAGGGATGCAAGT+TGG 0.561688 8_1:-63620201 Msa1206540:three_prime_UTR
AATCTTTACTAGGTTATACC+TGG 0.562944 8_1:-63620358 Msa1206540:three_prime_UTR
GGATCTCGATGGAGGACAAA+GGG 0.566793 8_1:-63624200 Msa1206540:CDS
TCGTCACGAGCTATAGAGCT+AGG 0.567657 8_1:+63623090 None:intergenic
ATATAATCAAGGATTCCAAA+AGG 0.569920 8_1:-63624003 Msa1206540:CDS
TCTTGTACAATACAACTAAG+AGG 0.575264 8_1:-63625993 Msa1206540:five_prime_UTR
GATTGAGACATGGGAAAACA+AGG 0.576682 8_1:-63625530 Msa1206540:exon
GAATTAGAGAGATTGATAAG+TGG 0.576897 8_1:+63625817 None:intergenic
TTTGCATTTCCTCGCAATGG+TGG 0.577452 8_1:-63620561 Msa1206540:CDS
TTGAGGAAAAGATTGAGACA+TGG 0.577970 8_1:-63625540 Msa1206540:exon
AATTTAGCAGTATCAACCAC+GGG 0.579103 8_1:+63621726 None:intergenic
ATGGTGTTTCTGTGGAAGGA+GGG 0.580700 8_1:+63620037 None:intergenic
TTACAAAAGTGAAACTCCGA+TGG 0.581064 8_1:-63623154 Msa1206540:CDS
TATTGAGCTTGGATTGCCAA+GGG 0.582624 8_1:-63620212 Msa1206540:three_prime_UTR
CAGTGACATTTAATATGTTG+AGG 0.582964 8_1:+63619855 None:intergenic
GCAGCTTTCTGAATTAGAGA+TGG 0.584857 8_1:+63623938 None:intergenic
CAAGCAATAGATCAAGTTCA+GGG 0.586403 8_1:-63623965 Msa1206540:CDS
AGCTCGTGACGAAGAGTCTG+AGG 0.591447 8_1:-63623079 Msa1206540:CDS
GTCTCTGTTGAGATAGGACA+TGG 0.594614 8_1:-63623132 Msa1206540:CDS
ATGCTTATGCTGCATCTGGA+TGG 0.594811 8_1:-63624037 Msa1206540:CDS
ATAGTAAAACCTGGCACTGG+TGG 0.598374 8_1:-63620627 Msa1206540:CDS
TGGATCTCGATGGAGGACAA+AGG 0.599405 8_1:-63624201 Msa1206540:CDS
TCAGATGAATGGTGTTTCTG+TGG 0.600576 8_1:+63620029 None:intergenic
TGCAACAGGAGCAGCTTGTG+TGG 0.602488 8_1:-63622909 Msa1206540:intron
GTGATAGTAAAACCTGGCAC+TGG 0.602888 8_1:-63620630 Msa1206540:CDS
TTATGGCTTATATCAGTAGT+GGG 0.603224 8_1:+63625654 None:intergenic
TACAATTGCATACAAAACAC+TGG 0.603777 8_1:+63620108 None:intergenic
TTATTGAGCTTGGATTGCCA+AGG 0.608489 8_1:-63620213 Msa1206540:three_prime_UTR
CTGCACTCTTTGAATAGCAA+CGG 0.611302 8_1:-63619835 Msa1206540:three_prime_UTR
TAGGAATCTGTACAATCCAA+TGG 0.620481 8_1:+63625850 None:intergenic
CTTCTACGAGTGCAGAAAGG+TGG 0.623014 8_1:-63620978 Msa1206540:intron
ATGAATGGTGTTTCTGTGGA+AGG 0.623129 8_1:+63620033 None:intergenic
GTAACTCCACAGTGAAAGCA+AGG 0.627202 8_1:+63625506 None:intergenic
CCAGTGTAATCACTAAGCAT+GGG 0.628822 8_1:+63622988 None:intergenic
TATCTCTTGTACAAGGACTT+CGG 0.632890 8_1:+63620266 None:intergenic
AAAAGGGTGATAGTAAAACC+TGG 0.635517 8_1:-63620636 Msa1206540:CDS
CATATATATAGCACAAAATG+CGG 0.640585 8_1:-63620142 Msa1206540:three_prime_UTR
CAGAATTGAAGACAACAATG+AGG 0.642781 8_1:-63620665 Msa1206540:CDS
GGGAGCAGGAGCTCTGCCTG+TGG 0.642912 8_1:+63620453 None:intergenic
ATGTGCAAGCCACCATTGCG+AGG 0.645717 8_1:+63620552 None:intergenic
TCCTTGTACAAGAGATACGA+TGG 0.646277 8_1:-63620260 Msa1206540:three_prime_UTR
CCTATCTCAACAGAGACCAT+CGG 0.650405 8_1:+63623138 None:intergenic
GCCATCGTATCTCTTGTACA+AGG 0.652953 8_1:+63620259 None:intergenic
TGATATGGAATCTCCTGCCG+TGG 0.657248 8_1:-63620934 Msa1206540:CDS
CGATAGCTTTCAATTCAAGG+AGG 0.658269 8_1:-63621516 Msa1206540:CDS
GAATCCTTGATTATATTCAG+GGG 0.659607 8_1:+63624010 None:intergenic
ATTCCAAAAGGCTGTCGATG+AGG 0.660779 8_1:-63623991 Msa1206540:CDS
GCAATGCATGTGGATCTCGA+TGG 0.669120 8_1:-63624211 Msa1206540:CDS
GGTGGCCCGTTACGCCAAAG+TGG 0.670404 8_1:+63624251 None:intergenic
CCCATGCTTAGTGATTACAC+TGG 0.670617 8_1:-63622988 Msa1206540:CDS
TAAGACACAAGCAAAACATG+TGG 0.676172 8_1:+63620293 None:intergenic
ATGCATGTGGATCTCGATGG+AGG 0.680507 8_1:-63624208 Msa1206540:CDS
TTAGGATGTAGTGAACTACA+AGG 0.684148 8_1:-63621802 Msa1206540:intron
AAATTTAGCAGTATCAACCA+CGG 0.687637 8_1:+63621725 None:intergenic
CAAGGACCTTGCTTTCACTG+TGG 0.702292 8_1:-63625512 Msa1206540:CDS
GTCAGTAGTCTGGGATACTG+CGG 0.720733 8_1:-63623310 Msa1206540:CDS
ATTACTGAAGTATCTCCCCG+TGG 0.761483 8_1:-63621742 Msa1206540:CDS
ATTTAGCAGTATCAACCACG+GGG 0.799155 8_1:+63621727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACTGTATAT+TGG + chr8_1:63620370-63620389 None:intergenic 10.0%
!!! TTTTTTTTGCTATTTTTTTT+TGG - chr8_1:63620384-63620403 Msa1206540:CDS 10.0%
!! AATATATTATTTGTTTATGT+TGG + chr8_1:63620537-63620556 None:intergenic 10.0%
!!! AAATTTAAAATGATTCATTT+AGG - chr8_1:63621111-63621130 Msa1206540:intron 10.0%
!!! ATATTTGATTTGAATAAAAA+TGG + chr8_1:63623508-63623527 None:intergenic 10.0%
!!! TTTTGTAATAATTTCATATT+CGG + chr8_1:63625017-63625036 None:intergenic 10.0%
!!! TTAAAGTATTTTGTAAATGA+AGG - chr8_1:63622250-63622269 Msa1206540:intron 15.0%
!!! CATATTAATATAATGTGTTT+TGG - chr8_1:63623577-63623596 Msa1206540:intron 15.0%
!!! AAATGATTTTTAATACTGTT+TGG - chr8_1:63623662-63623681 Msa1206540:intron 15.0%
!!! AATGATTTTTAATACTGTTT+GGG - chr8_1:63623663-63623682 Msa1206540:intron 15.0%
!! TCTTAAAAATAAAAAAGGAT+AGG + chr8_1:63624787-63624806 None:intergenic 15.0%
!! CTAACTCTTAAAAATAAAAA+AGG + chr8_1:63624792-63624811 None:intergenic 15.0%
!!! TATGGACATAATTTTATATT+TGG - chr8_1:63625509-63625528 Msa1206540:CDS 15.0%
!!! CATAATTTTATATTTGGTTA+CGG - chr8_1:63625515-63625534 Msa1206540:CDS 15.0%
!!! GTAAAAAAAAAGCACTTTTA+AGG - chr8_1:63620062-63620081 Msa1206540:three_prime_UTR 20.0%
!! GAATCATAAACAAATGTAAT+TGG - chr8_1:63620695-63620714 Msa1206540:intron 20.0%
!! AATATGATAAAGGATAATCA+TGG + chr8_1:63620919-63620938 None:intergenic 20.0%
!! AAAGCTTCAAAATATGATAA+AGG + chr8_1:63620929-63620948 None:intergenic 20.0%
!! TAAATTCATCAAGCAAATAT+GGG + chr8_1:63621247-63621266 None:intergenic 20.0%
!! ATAAATTCATCAAGCAAATA+TGG + chr8_1:63621248-63621267 None:intergenic 20.0%
!! TATGTAAAATATCTAGTAAC+AGG - chr8_1:63621324-63621343 Msa1206540:intron 20.0%
!! TGTGATTGTTAATTGTTTAT+CGG - chr8_1:63621465-63621484 Msa1206540:CDS 20.0%
!!! TTGCTTTTATTAAAGAAACA+AGG + chr8_1:63622459-63622478 None:intergenic 20.0%
!! TAACTCTAATAACAATAGTT+TGG - chr8_1:63622480-63622499 Msa1206540:CDS 20.0%
!! AACAATAGTTTGGTTAATTT+AGG - chr8_1:63622490-63622509 Msa1206540:CDS 20.0%
!! AAATATTAGAGATAAAACTG+TGG - chr8_1:63623238-63623257 Msa1206540:CDS 20.0%
!! GAATAACTATTAAGTCTTAA+AGG + chr8_1:63623297-63623316 None:intergenic 20.0%
!!! TTATTCCTTTTTGAAATTTC+AGG - chr8_1:63623311-63623330 Msa1206540:CDS 20.0%
!!! TATTCCTTTTTGAAATTTCA+GGG - chr8_1:63623312-63623331 Msa1206540:CDS 20.0%
!! TCAAATATTATATCCTAACA+TGG - chr8_1:63623520-63623539 Msa1206540:intron 20.0%
!!! AAATGATATGATCATGATTT+TGG - chr8_1:63623705-63623724 Msa1206540:intron 20.0%
!!! AATGATATGATCATGATTTT+GGG - chr8_1:63623706-63623725 Msa1206540:intron 20.0%
!!! TCTACAAAGCATTTATAATT+AGG - chr8_1:63623748-63623767 Msa1206540:intron 20.0%
!! AACATAACAAATTGACATTA+TGG - chr8_1:63623862-63623881 Msa1206540:intron 20.0%
!!! ACATTATGGTTTGATTTAAT+TGG - chr8_1:63623876-63623895 Msa1206540:intron 20.0%
!!! TTCAGCATTCATTAATTTTA+TGG + chr8_1:63623989-63624008 None:intergenic 20.0%
!! AAAATTGAAACTTATGTCAA+AGG + chr8_1:63624228-63624247 None:intergenic 20.0%
!! CATATCATTCATATTTATTC+AGG + chr8_1:63624671-63624690 None:intergenic 20.0%
!!! AAAGCTTAACATATTTTGTT+TGG - chr8_1:63624719-63624738 Msa1206540:intron 20.0%
!!! TTAACATATTTTGTTTGGTT+TGG - chr8_1:63624724-63624743 Msa1206540:intron 20.0%
! AATTAGAGAGATTGATAAGT+GGG + chr8_1:63620017-63620036 None:intergenic 25.0%
! TTAAAAACAAAAACTGCTTC+TGG - chr8_1:63620087-63620106 Msa1206540:three_prime_UTR 25.0%
! TAAAAACAAAAACTGCTTCT+GGG - chr8_1:63620088-63620107 Msa1206540:three_prime_UTR 25.0%
!! TTTTTGTTCAAAACTGTTTC+TGG - chr8_1:63620128-63620147 Msa1206540:three_prime_UTR 25.0%
!!! TTTTGTTCAAAACTGTTTCT+GGG - chr8_1:63620129-63620148 Msa1206540:three_prime_UTR 25.0%
!!! TGTTTTTTAAGCCTAACTTA+TGG + chr8_1:63620198-63620217 None:intergenic 25.0%
!! AATCTTTTCCTCAAACAAAA+GGG + chr8_1:63620286-63620305 None:intergenic 25.0%
! TAGTTCACTTATTTCACATT+TGG - chr8_1:63620792-63620811 Msa1206540:intron 25.0%
! GAACATAAGAAAAAGAAAAG+AGG - chr8_1:63620825-63620844 Msa1206540:intron 25.0%
! AAAAAGAAAAGAGGATAATG+TGG - chr8_1:63620834-63620853 Msa1206540:intron 25.0%
! TTGATGAATTTATTGCATAC+CGG - chr8_1:63621255-63621274 Msa1206540:intron 25.0%
! TATCAGTATTCAAGATCATA+AGG + chr8_1:63621385-63621404 None:intergenic 25.0%
! TAACAAATAATCCTTGCAAT+AGG - chr8_1:63621554-63621573 Msa1206540:intron 25.0%
! TAAGAACAAAGAAGTGAAAT+TGG - chr8_1:63621748-63621767 Msa1206540:CDS 25.0%
! ATATAATCAAGGATTCCAAA+AGG - chr8_1:63621829-63621848 Msa1206540:intron 25.0%
! TCTATAGTATTTCAACTGAA+AGG + chr8_1:63622025-63622044 None:intergenic 25.0%
! TTGATTATGCTCAAACAAAT+AGG + chr8_1:63622060-63622079 None:intergenic 25.0%
!! TCAAGAAGTGCATAATAAAA+TGG - chr8_1:63622076-63622095 Msa1206540:intron 25.0%
!! CAAGAAGTGCATAATAAAAT+GGG - chr8_1:63622077-63622096 Msa1206540:intron 25.0%
!! AAGAAGTGCATAATAAAATG+GGG - chr8_1:63622078-63622097 Msa1206540:intron 25.0%
! ATGAATAGTCTTTGTACATA+TGG - chr8_1:63623205-63623224 Msa1206540:CDS 25.0%
!!! TAAAACTGTGGAATTTGTTT+TGG - chr8_1:63623250-63623269 Msa1206540:CDS 25.0%
!!! CTTTTTTTTCCCTCTTTTTA+TGG - chr8_1:63623424-63623443 Msa1206540:intron 25.0%
! ATAATTTCATGCATTACTCT+TGG - chr8_1:63623613-63623632 Msa1206540:intron 25.0%
! TAATTTCATGCATTACTCTT+GGG - chr8_1:63623614-63623633 Msa1206540:intron 25.0%
! TTTCACCATATAGATATTTG+TGG - chr8_1:63623823-63623842 Msa1206540:intron 25.0%
! AACCTCTTACAATTGTATAT+TGG - chr8_1:63623934-63623953 Msa1206540:CDS 25.0%
! TCTTACAATTGTATATTGGT+CGG - chr8_1:63623938-63623957 Msa1206540:CDS 25.0%
!! ATAACTTTTATTCCCTATTC+CGG + chr8_1:63624257-63624276 None:intergenic 25.0%
!! AGAACACTATAATTTTCTCA+AGG - chr8_1:63624466-63624485 Msa1206540:intron 25.0%
!!! AATTTGACTTGAGATACAAT+TGG - chr8_1:63624639-63624658 Msa1206540:intron 25.0%
! TTGGTTTCAAAATTTGTATC+TGG - chr8_1:63624753-63624772 Msa1206540:intron 25.0%
!!! AACCTGGAAAATTTTGATTT+TGG + chr8_1:63624964-63624983 None:intergenic 25.0%
! ATTGATGTGTTTCAAAGTAA+AGG + chr8_1:63625058-63625077 None:intergenic 25.0%
! AACCTAGTAAAGATTATTCA+AGG + chr8_1:63625469-63625488 None:intergenic 25.0%
! CATATATATAGCACAAAATG+CGG - chr8_1:63625690-63625709 Msa1206540:intron 25.0%
!! CATTTATTTCTTCAGATGAA+TGG + chr8_1:63625817-63625836 None:intergenic 25.0%
! CATTCATCTGAAGAAATAAA+TGG - chr8_1:63625815-63625834 Msa1206540:five_prime_UTR 25.0%
!!! AATAGCTTTATGAATGGATA+GGG - chr8_1:63625841-63625860 Msa1206540:five_prime_UTR 25.0%
!! GATGAACTAGACAATTATTT+TGG - chr8_1:63625863-63625882 Msa1206540:five_prime_UTR 25.0%
!! AATCGTAAAATGTCATGTTT+TGG + chr8_1:63625902-63625921 None:intergenic 25.0%
!! AAACATGACATTTTACGATT+AGG - chr8_1:63625902-63625921 Msa1206540:five_prime_UTR 25.0%
! TTGGTTATAAAGAGTTTAGT+TGG - chr8_1:63625935-63625954 Msa1206540:five_prime_UTR 25.0%
TCTTGTACAATACAACTAAG+AGG - chr8_1:63619839-63619858 Msa1206540:three_prime_UTR 30.0%
! AATGTTCTTTTCTCTTCCAT+TGG - chr8_1:63619966-63619985 Msa1206540:three_prime_UTR 30.0%
GAATTAGAGAGATTGATAAG+TGG + chr8_1:63620018-63620037 None:intergenic 30.0%
TTATGGCTTATATCAGTAGT+GGG + chr8_1:63620181-63620200 None:intergenic 30.0%
ACTGATATAAGCCATAAGTT+AGG - chr8_1:63620184-63620203 Msa1206540:three_prime_UTR 30.0%
!! TTTATTTGCCCTTTTGTTTG+AGG - chr8_1:63620275-63620294 Msa1206540:three_prime_UTR 30.0%
! CAATCTTTTCCTCAAACAAA+AGG + chr8_1:63620287-63620306 None:intergenic 30.0%
AAAATTGAGATATGTGTTGC+TGG - chr8_1:63620511-63620530 Msa1206540:CDS 30.0%
!! TTGTTGTTGTCTAGTGTTTT+GGG - chr8_1:63620571-63620590 Msa1206540:CDS 30.0%
!! ATCCACTCATGTGTTTTAAA+AGG - chr8_1:63620880-63620899 Msa1206540:CDS 30.0%
!!! ATCCTTTTAAAACACATGAG+TGG + chr8_1:63620885-63620904 None:intergenic 30.0%
ATTTAAGAGGTCATGTATAC+TGG + chr8_1:63621216-63621235 None:intergenic 30.0%
! TATCTTCTTTTCCTTGCAAA+AGG - chr8_1:63621278-63621297 Msa1206540:intron 30.0%
! ATCTTCTTTTCCTTGCAAAA+GGG - chr8_1:63621279-63621298 Msa1206540:intron 30.0%
ATCTAGTAACAGGAAGATAT+TGG - chr8_1:63621334-63621353 Msa1206540:intron 30.0%
AGATATTGGACAATTTAAGC+AGG - chr8_1:63621348-63621367 Msa1206540:intron 30.0%
TGAACTCAGAAAACATCTTA+AGG + chr8_1:63621424-63621443 None:intergenic 30.0%
TGTTTATCGGTCTTTCTAAT+TGG - chr8_1:63621478-63621497 Msa1206540:CDS 30.0%
! ATTGCATAAAATTGGCTTCT+CGG + chr8_1:63621606-63621625 None:intergenic 30.0%
ATTATACTCCTTTACATGCT+CGG - chr8_1:63621666-63621685 Msa1206540:intron 30.0%
GAATCCTTGATTATATTCAG+GGG + chr8_1:63621825-63621844 None:intergenic 30.0%
GGAATCCTTGATTATATTCA+GGG + chr8_1:63621826-63621845 None:intergenic 30.0%
TGGAATCCTTGATTATATTC+AGG + chr8_1:63621827-63621846 None:intergenic 30.0%
GAATTGCAAATGAACATATG+AGG - chr8_1:63622125-63622144 Msa1206540:intron 30.0%
! TGATAACTTGTCTTCCTTTA+GGG + chr8_1:63622160-63622179 None:intergenic 30.0%
! ATGATAACTTGTCTTCCTTT+AGG + chr8_1:63622161-63622180 None:intergenic 30.0%
TTATCATTGCTTCAAAGTTC+TGG - chr8_1:63622174-63622193 Msa1206540:intron 30.0%
TAAACAATGCCTAATGAATG+AGG - chr8_1:63622798-63622817 Msa1206540:intron 30.0%
CATATGTGTAACTTTAGTAG+TGG + chr8_1:63623103-63623122 None:intergenic 30.0%
TTGTCCCTGAAATTTCAAAA+AGG + chr8_1:63623319-63623338 None:intergenic 30.0%
CTTGAAAAACTAGAAGTTCT+TGG - chr8_1:63623346-63623365 Msa1206540:intron 30.0%
CCAAACAATCCATAAAAAGA+GGG + chr8_1:63623436-63623455 None:intergenic 30.0%
! TTTTAATACTGTTTGGGAGT+AGG - chr8_1:63623669-63623688 Msa1206540:intron 30.0%
CATCTCCACAAATATCTATA+TGG + chr8_1:63623831-63623850 None:intergenic 30.0%
GACCAATATACAATTGTAAG+AGG + chr8_1:63623939-63623958 None:intergenic 30.0%
AATGCAATATCTGTCATGTT+TGG - chr8_1:63624007-63624026 Msa1206540:CDS 30.0%
AATATCTGTCATGTTTGGTT+AGG - chr8_1:63624012-63624031 Msa1206540:CDS 30.0%
AAATTTAGCAGTATCAACCA+CGG + chr8_1:63624110-63624129 None:intergenic 30.0%
ATACTGCTAAATTTCCTGAT+AGG - chr8_1:63624116-63624135 Msa1206540:CDS 30.0%
! AAGTTTCAATTTTGTCTCTC+CGG - chr8_1:63624235-63624254 Msa1206540:CDS 30.0%
AGGGAATAAAAGTTATTGAC+CGG - chr8_1:63624261-63624280 Msa1206540:intron 30.0%
! TTATTTTCAGAAACTTCTCG+AGG - chr8_1:63624346-63624365 Msa1206540:intron 30.0%
GTCTTTGATATCTCTTTGTT+TGG - chr8_1:63624374-63624393 Msa1206540:intron 30.0%
! TTTGATATCTCTTTGTTTGG+AGG - chr8_1:63624377-63624396 Msa1206540:intron 30.0%
!!! TTAGTTTTGCCAGTTTAGAT+TGG - chr8_1:63624808-63624827 Msa1206540:intron 30.0%
TGAACTAATCCAATCTAAAC+TGG + chr8_1:63624820-63624839 None:intergenic 30.0%
! AGCCAAAATCAAAATTTTCC+AGG - chr8_1:63624959-63624978 Msa1206540:intron 30.0%
ACAACTGATAACAATAACAC+AGG + chr8_1:63625096-63625115 None:intergenic 30.0%
!! CAATTCTGAAATTTGCAAGA+TGG + chr8_1:63625155-63625174 None:intergenic 30.0%
TGTGGAAAAGAATTGTTAGA+TGG + chr8_1:63625364-63625383 None:intergenic 30.0%
! ATCTAACAATTCTTTTCCAC+AGG - chr8_1:63625363-63625382 Msa1206540:intron 30.0%
GTCCTTGAATAATCTTTACT+AGG - chr8_1:63625464-63625483 Msa1206540:intron 30.0%
AATCTTTACTAGGTTATACC+TGG - chr8_1:63625474-63625493 Msa1206540:intron 30.0%
TACAATTGCATACAAAACAC+TGG + chr8_1:63625727-63625746 None:intergenic 30.0%
!! TGGATGAATAGCTTTATGAA+TGG - chr8_1:63625835-63625854 Msa1206540:five_prime_UTR 30.0%
!! GAATAGCTTTATGAATGGAT+AGG - chr8_1:63625840-63625859 Msa1206540:five_prime_UTR 30.0%
!! ACGATTAGGATTTTAGTGTT+TGG - chr8_1:63625916-63625935 Msa1206540:five_prime_UTR 30.0%
CAGTGACATTTAATATGTTG+AGG + chr8_1:63625980-63625999 None:intergenic 30.0%
AATGAGAGAGAAAAGGAGAA+GGG + chr8_1:63619932-63619951 None:intergenic 35.0%
TCTGATGAATGAGAGAGAAA+AGG + chr8_1:63619939-63619958 None:intergenic 35.0%
GGAAGAGAAAAGAACATTGA+AGG + chr8_1:63619964-63619983 None:intergenic 35.0%
TAGGAATCTGTACAATCCAA+TGG + chr8_1:63619985-63620004 None:intergenic 35.0%
CTTATGGCTTATATCAGTAG+TGG + chr8_1:63620182-63620201 None:intergenic 35.0%
TTGAGGAAAAGATTGAGACA+TGG - chr8_1:63620292-63620311 Msa1206540:three_prime_UTR 35.0%
TGAGGAAAAGATTGAGACAT+GGG - chr8_1:63620293-63620312 Msa1206540:three_prime_UTR 35.0%
!! GTTGTTGTTGTCTAGTGTTT+TGG - chr8_1:63620570-63620589 Msa1206540:CDS 35.0%
GACACAAAACACATCAAAGT+AGG + chr8_1:63620628-63620647 None:intergenic 35.0%
TCAGAATCTGTTGAATGCAT+AGG - chr8_1:63620731-63620750 Msa1206540:intron 35.0%
TGGATTTGTGAAATGTCCAT+TGG - chr8_1:63620854-63620873 Msa1206540:intron 35.0%
!! TTGCAGGATTAGTTCTATTG+AGG + chr8_1:63620994-63621013 None:intergenic 35.0%
TCAATAGAACTAATCCTGCA+AGG - chr8_1:63620993-63621012 Msa1206540:intron 35.0%
ATGCTTGGATTTGAACCAAA+AGG + chr8_1:63621182-63621201 None:intergenic 35.0%
ATGGGTGAACTCAATTTAAG+AGG + chr8_1:63621229-63621248 None:intergenic 35.0%
TTGCAAGGAAAAGAAGATAC+CGG + chr8_1:63621277-63621296 None:intergenic 35.0%
TTGGACAATTTAAGCAGGAA+TGG - chr8_1:63621353-63621372 Msa1206540:intron 35.0%
! GTTTTCTGAGTTCAGTTTTG+TGG - chr8_1:63621430-63621449 Msa1206540:CDS 35.0%
! TCTCTTTTCTTGTGTACAAG+AGG - chr8_1:63621507-63621526 Msa1206540:CDS 35.0%
! CTCTTTTCTTGTGTACAAGA+GGG - chr8_1:63621508-63621527 Msa1206540:CDS 35.0%
! TTGCATAAAATTGGCTTCTC+GGG + chr8_1:63621605-63621624 None:intergenic 35.0%
CCACATGCATTGCATAAAAT+TGG + chr8_1:63621614-63621633 None:intergenic 35.0%
! CCAATTTTATGCAATGCATG+TGG - chr8_1:63621611-63621630 Msa1206540:intron 35.0%
TTCACCCCTGAATATAATCA+AGG - chr8_1:63621818-63621837 Msa1206540:intron 35.0%
ACAAGCAATAGATCAAGTTC+AGG - chr8_1:63621866-63621885 Msa1206540:intron 35.0%
CAAGCAATAGATCAAGTTCA+GGG - chr8_1:63621867-63621886 Msa1206540:intron 35.0%
TGTTTCTTCATAACCGATCA+TGG - chr8_1:63621990-63622009 Msa1206540:intron 35.0%
GTGTCTCAAAACAATTGCAA+TGG - chr8_1:63622280-63622299 Msa1206540:intron 35.0%
CGTGAAGATTTGCATATATG+AGG - chr8_1:63622364-63622383 Msa1206540:intron 35.0%
TGGTTAATTTAGGTCCTTCT+CGG - chr8_1:63622500-63622519 Msa1206540:CDS 35.0%
!!! GCACATGTTCTCTTTTTTGA+AGG + chr8_1:63622550-63622569 None:intergenic 35.0%
TCAAAAAAGAGAACATGTGC+CGG - chr8_1:63622550-63622569 Msa1206540:intron 35.0%
TTACAAAAGTGAAACTCCGA+TGG - chr8_1:63622678-63622697 Msa1206540:intron 35.0%
ACGAATATGCCTCATTCATT+AGG + chr8_1:63622810-63622829 None:intergenic 35.0%
AATGAGGCATATTCGTGTTA+TGG - chr8_1:63622814-63622833 Msa1206540:intron 35.0%
! TTGATAGTATTCTCCTGAAG+TGG - chr8_1:63623161-63623180 Msa1206540:CDS 35.0%
!! CCCTCTTTTTATGGATTGTT+TGG - chr8_1:63623433-63623452 Msa1206540:intron 35.0%
GCCAAACAATCCATAAAAAG+AGG + chr8_1:63623437-63623456 None:intergenic 35.0%
! TTAGTACTTGCTACAAGACT+GGG + chr8_1:63623483-63623502 None:intergenic 35.0%
! TTTAGTACTTGCTACAAGAC+TGG + chr8_1:63623484-63623503 None:intergenic 35.0%
TTAGGATGTAGTGAACTACA+AGG - chr8_1:63624030-63624049 Msa1206540:CDS 35.0%
AATTTAGCAGTATCAACCAC+GGG + chr8_1:63624109-63624128 None:intergenic 35.0%
TTTCCTGATAGGTTAGAATC+TGG - chr8_1:63624127-63624146 Msa1206540:CDS 35.0%
TAACCAGATTCTAACCTATC+AGG + chr8_1:63624133-63624152 None:intergenic 35.0%
! AATTTTGTCTCTCCGGAATA+GGG - chr8_1:63624242-63624261 Msa1206540:CDS 35.0%
GTTCGATAGCTTTCAATTCA+AGG - chr8_1:63624313-63624332 Msa1206540:intron 35.0%
AAGACTGCAAGACATGTAAA+AGG - chr8_1:63624408-63624427 Msa1206540:intron 35.0%
! AATTTTCTCAAGGTTTGTGC+TGG - chr8_1:63624476-63624495 Msa1206540:intron 35.0%
CTTGTCAGATATCACATCTA+GGG - chr8_1:63624556-63624575 Msa1206540:intron 35.0%
TTGTCAGATATCACATCTAG+GGG - chr8_1:63624557-63624576 Msa1206540:intron 35.0%
!! TTGTTTGGTTTGGATGTAGT+TGG - chr8_1:63624734-63624753 Msa1206540:intron 35.0%
AGCTGGAAAACGTAATGATA+TGG - chr8_1:63624883-63624902 Msa1206540:intron 35.0%
CAGAATTGAAGACAACAATG+AGG - chr8_1:63625167-63625186 Msa1206540:intron 35.0%
! GGTTTTACTATCACCCTTTT+GGG + chr8_1:63625196-63625215 None:intergenic 35.0%
! AGGTTTTACTATCACCCTTT+TGG + chr8_1:63625197-63625216 None:intergenic 35.0%
AAAAGGGTGATAGTAAAACC+TGG - chr8_1:63625196-63625215 Msa1206540:intron 35.0%
! GGAAATGCAAATAGGCTTTT+CGG + chr8_1:63625262-63625281 None:intergenic 35.0%
! AAACTTCGTTGATGAGAGTT+CGG - chr8_1:63625315-63625334 Msa1206540:intron 35.0%
TAAGACACAAGCAAAACATG+TGG + chr8_1:63625542-63625561 None:intergenic 35.0%
TATCTCTTGTACAAGGACTT+CGG + chr8_1:63625569-63625588 None:intergenic 35.0%
!!! TTGGATGGGCTATTTTGTAT+AGG - chr8_1:63625650-63625669 Msa1206540:five_prime_UTR 35.0%
AAAGAGAGAGAATGAGAGGA+AGG + chr8_1:63619897-63619916 None:intergenic 40.0%
ATGGAAAGAGAGAGAATGAG+AGG + chr8_1:63619901-63619920 None:intergenic 40.0%
GAATGAGAGAGAAAAGGAGA+AGG + chr8_1:63619933-63619952 None:intergenic 40.0%
!!! GATAAGTGGGTGTTTTAGCT+AGG + chr8_1:63620004-63620023 None:intergenic 40.0%
GATTGAGACATGGGAAAACA+AGG - chr8_1:63620302-63620321 Msa1206540:three_prime_UTR 40.0%
! CAAAGTCTGTTTTGCAACCT+TGG - chr8_1:63620469-63620488 Msa1206540:CDS 40.0%
CAATATCACAATCAGTGCCA+AGG + chr8_1:63620489-63620508 None:intergenic 40.0%
!!! GTTGTCTAGTGTTTTGGGAT+TGG - chr8_1:63620576-63620595 Msa1206540:CDS 40.0%
!! CACATGAGTGGATTAACCAA+TGG + chr8_1:63620873-63620892 None:intergenic 40.0%
AATGTTGAAGTCGTTGCTGT+TGG - chr8_1:63621077-63621096 Msa1206540:intron 40.0%
AACATTGATGCTGCGATACT+AGG - chr8_1:63621141-63621160 Msa1206540:intron 40.0%
! CGGATAAATGCTAAGCCTTT+TGG - chr8_1:63621164-63621183 Msa1206540:intron 40.0%
CTGGTAAGTAAGACAATGCT+TGG + chr8_1:63621197-63621216 None:intergenic 40.0%
!!! GACAGATACTGTCGATTTTG+AGG - chr8_1:63621688-63621707 Msa1206540:intron 40.0%
TTGAGGATCAGAGAGTTTCA+AGG - chr8_1:63621705-63621724 Msa1206540:intron 40.0%
GATAATGCTTATGCTGCATC+TGG - chr8_1:63621791-63621810 Msa1206540:CDS 40.0%
GCAGCTTTCTGAATTAGAGA+TGG + chr8_1:63621897-63621916 None:intergenic 40.0%
TCAGAAAGCTGCGTTCAATT+TGG - chr8_1:63621905-63621924 Msa1206540:intron 40.0%
ACCTGTCAAATCACTAGCAT+CGG + chr8_1:63621936-63621955 None:intergenic 40.0%
ATGCTAGTGATTTGACAGGT+TGG - chr8_1:63621936-63621955 Msa1206540:intron 40.0%
! GTCTTCCTTTAGGGAAACAA+AGG + chr8_1:63622151-63622170 None:intergenic 40.0%
ATCTACTGCAGCTCAAAAAC+AGG - chr8_1:63622430-63622449 Msa1206540:intron 40.0%
CAAAAAAGAGAACATGTGCC+GGG - chr8_1:63622551-63622570 Msa1206540:intron 40.0%
! AACAGGATTGCTGTTGTTCA+TGG + chr8_1:63622630-63622649 None:intergenic 40.0%
TTCAGAAGAAGCAGAGAAAC+AGG + chr8_1:63622647-63622666 None:intergenic 40.0%
! TTTCTCTGCTTCTTCTGAAG+AGG - chr8_1:63622648-63622667 Msa1206540:intron 40.0%
! GACATGGAAGCATGCTTATT+AGG - chr8_1:63622716-63622735 Msa1206540:intron 40.0%
CCAGTGTAATCACTAAGCAT+GGG + chr8_1:63622847-63622866 None:intergenic 40.0%
TGGCATGAATTTCTCTTCTC+AGG - chr8_1:63622864-63622883 Msa1206540:intron 40.0%
GGCATGAATTTCTCTTCTCA+GGG - chr8_1:63622865-63622884 Msa1206540:intron 40.0%
TAAGATCTTCGTACCACTTC+AGG + chr8_1:63623177-63623196 None:intergenic 40.0%
GGTTAATTGCTATGCACTGA+TGG + chr8_1:63623918-63623937 None:intergenic 40.0%
ATTTAGCAGTATCAACCACG+GGG + chr8_1:63624108-63624127 None:intergenic 40.0%
! CAATTTTGTCTCTCCGGAAT+AGG - chr8_1:63624241-63624260 Msa1206540:CDS 40.0%
CGATAGCTTTCAATTCAAGG+AGG - chr8_1:63624316-63624335 Msa1206540:intron 40.0%
TTTCAGAAACTTCTCGAGGA+AGG - chr8_1:63624350-63624369 Msa1206540:intron 40.0%
TACATGTCTTGCAGTCTTCA+GGG + chr8_1:63624406-63624425 None:intergenic 40.0%
TTACATGTCTTGCAGTCTTC+AGG + chr8_1:63624407-63624426 None:intergenic 40.0%
GCTTGTCAGATATCACATCT+AGG - chr8_1:63624555-63624574 Msa1206540:intron 40.0%
ATTCTTCTACGAGTGCAGAA+AGG - chr8_1:63624851-63624870 Msa1206540:intron 40.0%
! GACAAGAGATTTTGCTAACC+TGG + chr8_1:63624980-63624999 None:intergenic 40.0%
AACAATGAGGAGTCCCAAAA+GGG - chr8_1:63625180-63625199 Msa1206540:intron 40.0%
CATTGCGAGGAAATGCAAAT+AGG + chr8_1:63625270-63625289 None:intergenic 40.0%
CTATTTGCATTTCCTCGCAA+TGG - chr8_1:63625268-63625287 Msa1206540:intron 40.0%
GAGCAACCAAGCTAGAATTT+GGG + chr8_1:63625402-63625421 None:intergenic 40.0%
TGAGCAACCAAGCTAGAATT+TGG + chr8_1:63625403-63625422 None:intergenic 40.0%
!! AATTCTAGCTTGGTTGCTCA+AGG - chr8_1:63625403-63625422 Msa1206540:intron 40.0%
! ACCTGGAAGAGTATGTACTA+TGG - chr8_1:63625491-63625510 Msa1206540:intron 40.0%
TCCATAGTACATACTCTTCC+AGG + chr8_1:63625495-63625514 None:intergenic 40.0%
TCCTTGTACAAGAGATACGA+TGG - chr8_1:63625572-63625591 Msa1206540:five_prime_UTR 40.0%
ACTTGCAACCTTATTGAGCT+TGG - chr8_1:63625609-63625628 Msa1206540:five_prime_UTR 40.0%
TTGGCAATCCAAGCTCAATA+AGG + chr8_1:63625620-63625639 None:intergenic 40.0%
TTATTGAGCTTGGATTGCCA+AGG - chr8_1:63625619-63625638 Msa1206540:five_prime_UTR 40.0%
TATTGAGCTTGGATTGCCAA+GGG - chr8_1:63625620-63625639 Msa1206540:five_prime_UTR 40.0%
! ATGAATGGTGTTTCTGTGGA+AGG + chr8_1:63625802-63625821 None:intergenic 40.0%
! TCAGATGAATGGTGTTTCTG+TGG + chr8_1:63625806-63625825 None:intergenic 40.0%
AAGAGTTTAGTTGGCAAGTG+AGG - chr8_1:63625944-63625963 Msa1206540:five_prime_UTR 40.0%
CTGCACTCTTTGAATAGCAA+CGG - chr8_1:63625997-63626016 Msa1206540:five_prime_UTR 40.0%
AGAGAGAATGAGAGGAAGGA+AGG + chr8_1:63619893-63619912 None:intergenic 45.0%
AGAGAGAAAAGGAGAAGGGA+AGG + chr8_1:63619928-63619947 None:intergenic 45.0%
GTAACTCCACAGTGAAAGCA+AGG + chr8_1:63620329-63620348 None:intergenic 45.0%
TTTAAGAGTTGCAGCCTTGC+AGG + chr8_1:63621010-63621029 None:intergenic 45.0%
ATTGATGCTGCGATACTAGG+CGG - chr8_1:63621144-63621163 Msa1206540:intron 45.0%
AAAGTGGTGTGCCTATTGCA+AGG + chr8_1:63621568-63621587 None:intergenic 45.0%
TTGCAATAGGCACACCACTT+TGG - chr8_1:63621567-63621586 Msa1206540:intron 45.0%
! CATAAAATTGGCTTCTCGGG+TGG + chr8_1:63621602-63621621 None:intergenic 45.0%
GTATCTGTCCGAGCATGTAA+AGG + chr8_1:63621677-63621696 None:intergenic 45.0%
ATGCTTATGCTGCATCTGGA+TGG - chr8_1:63621795-63621814 Msa1206540:CDS 45.0%
ATTCCAAAAGGCTGTCGATG+AGG - chr8_1:63621841-63621860 Msa1206540:intron 45.0%
! TATCCTCATCGACAGCCTTT+TGG + chr8_1:63621847-63621866 None:intergenic 45.0%
GAAAGCTGCGTTCAATTTGG+CGG - chr8_1:63621908-63621927 Msa1206540:intron 45.0%
ACCGATGCTAGTGATTTGAC+AGG - chr8_1:63621932-63621951 Msa1206540:intron 45.0%
AAGGACAATGCTGCCATGAT+CGG + chr8_1:63622006-63622025 None:intergenic 45.0%
! TGAGGCCTTTGTTTCCCTAA+AGG - chr8_1:63622143-63622162 Msa1206540:intron 45.0%
CCTATCTCAACAGAGACCAT+CGG + chr8_1:63622697-63622716 None:intergenic 45.0%
GTCTCTGTTGAGATAGGACA+TGG - chr8_1:63622700-63622719 Msa1206540:intron 45.0%
CCCATGCTTAGTGATTACAC+TGG - chr8_1:63622844-63622863 Msa1206540:intron 45.0%
GCCAGTGTAATCACTAAGCA+TGG + chr8_1:63622848-63622867 None:intergenic 45.0%
ACACTGCAGCAAACCATGTT+AGG + chr8_1:63623536-63623555 None:intergenic 45.0%
!! TGGTTTGCTGCAGTGTTGTT+TGG - chr8_1:63623540-63623559 Msa1206540:intron 45.0%
GCATTACTCTTGGGACTTTC+TGG - chr8_1:63623623-63623642 Msa1206540:intron 45.0%
CGGGGAGATACTTCAGTAAT+TGG + chr8_1:63624090-63624109 None:intergenic 45.0%
! ATTACTGAAGTATCTCCCCG+TGG - chr8_1:63624090-63624109 Msa1206540:CDS 45.0%
TGCTGCACATACAACAATGC+CGG + chr8_1:63624283-63624302 None:intergenic 45.0%
CAGAAAGGTGGAAACAAAGC+TGG - chr8_1:63624866-63624885 Msa1206540:intron 45.0%
CGCAACATTACTTGATGCCA+CGG + chr8_1:63624918-63624937 None:intergenic 45.0%
CAACAATGAGGAGTCCCAAA+AGG - chr8_1:63625179-63625198 Msa1206540:intron 45.0%
GTGATAGTAAAACCTGGCAC+TGG - chr8_1:63625202-63625221 Msa1206540:intron 45.0%
! ATAGTAAAACCTGGCACTGG+TGG - chr8_1:63625205-63625224 Msa1206540:intron 45.0%
TTTGCATTTCCTCGCAATGG+TGG - chr8_1:63625271-63625290 Msa1206540:intron 45.0%
CGAGTATACTGAGCTACTAC+TGG + chr8_1:63625434-63625453 None:intergenic 45.0%
GCCATCGTATCTCTTGTACA+AGG + chr8_1:63625576-63625595 None:intergenic 45.0%
! ATGGTGTTTCTGTGGAAGGA+GGG + chr8_1:63625798-63625817 None:intergenic 45.0%
! AATGGTGTTTCTGTGGAAGG+AGG + chr8_1:63625799-63625818 None:intergenic 45.0%
! AAGGAGAAGGGAAGGTGCAA+TGG + chr8_1:63619920-63619939 None:intergenic 50.0%
CAAGGACCTTGCTTTCACTG+TGG - chr8_1:63620320-63620339 Msa1206540:three_prime_UTR 50.0%
! CATAGCAACGCCCTTTTGCA+AGG + chr8_1:63621292-63621311 None:intergenic 50.0%
GCAATGCATGTGGATCTCGA+TGG - chr8_1:63621621-63621640 Msa1206540:intron 50.0%
ATGCATGTGGATCTCGATGG+AGG - chr8_1:63621624-63621643 Msa1206540:intron 50.0%
TGGATCTCGATGGAGGACAA+AGG - chr8_1:63621631-63621650 Msa1206540:intron 50.0%
GGATCTCGATGGAGGACAAA+GGG - chr8_1:63621632-63621651 Msa1206540:intron 50.0%
TCCTTCTCGGTCAGTAGTCT+GGG - chr8_1:63622513-63622532 Msa1206540:intron 50.0%
! GTCAGTAGTCTGGGATACTG+CGG - chr8_1:63622522-63622541 Msa1206540:intron 50.0%
AGAAGAATGCTTCAGACGCC+CGG + chr8_1:63622572-63622591 None:intergenic 50.0%
CCGATGGTCTCTGTTGAGAT+AGG - chr8_1:63622694-63622713 Msa1206540:intron 50.0%
TCGTCACGAGCTATAGAGCT+AGG + chr8_1:63622745-63622764 None:intergenic 50.0%
CTCTTCTCAGGGAGTTGCAA+AGG - chr8_1:63622876-63622895 Msa1206540:intron 50.0%
GCAAAGGTCAGAAACTCTGC+TGG - chr8_1:63622892-63622911 Msa1206540:intron 50.0%
CTTCTACGAGTGCAGAAAGG+TGG - chr8_1:63624854-63624873 Msa1206540:intron 50.0%
TGATATGGAATCTCCTGCCG+TGG - chr8_1:63624898-63624917 Msa1206540:intron 50.0%
ACATTACTTGATGCCACGGC+AGG + chr8_1:63624914-63624933 None:intergenic 50.0%
GGTGGCAAAGAAGCTGTAGA+TGG - chr8_1:63625223-63625242 Msa1206540:intron 50.0%
! CGTTGATGAGAGTTCGGATC+AGG - chr8_1:63625321-63625340 Msa1206540:intron 50.0%
CCAAGCTAGAATTTGGGAGC+AGG + chr8_1:63625396-63625415 None:intergenic 50.0%
! CCTGCTCCCAAATTCTAGCT+TGG - chr8_1:63625393-63625412 Msa1206540:intron 50.0%
GATTGCCAAGGGATGCAAGT+TGG - chr8_1:63625631-63625650 Msa1206540:five_prime_UTR 50.0%
! CCAAGGGATGCAAGTTGGAT+GGG - chr8_1:63625636-63625655 Msa1206540:five_prime_UTR 50.0%
GGCACACCACTTTGGCGTAA+CGG - chr8_1:63621575-63621594 Msa1206540:intron 55.0%
GCACACCACTTTGGCGTAAC+GGG - chr8_1:63621576-63621595 Msa1206540:intron 55.0%
GTCCTTCTCGGTCAGTAGTC+TGG - chr8_1:63622512-63622531 Msa1206540:intron 55.0%
TCCCAGACTACTGACCGAGA+AGG + chr8_1:63622517-63622536 None:intergenic 55.0%
AGCTCGTGACGAAGAGTCTG+AGG - chr8_1:63622753-63622772 Msa1206540:intron 55.0%
GCTGCTCCTGTTGCAGTCTT+GGG + chr8_1:63622918-63622937 None:intergenic 55.0%
AGCTGCTCCTGTTGCAGTCT+TGG + chr8_1:63622919-63622938 None:intergenic 55.0%
TGCAACAGGAGCAGCTTGTG+TGG - chr8_1:63622923-63622942 Msa1206540:CDS 55.0%
ATGTGCAAGCCACCATTGCG+AGG + chr8_1:63625283-63625302 None:intergenic 55.0%
! CAATGGTGGCTTGCACATGC+TGG - chr8_1:63625285-63625304 Msa1206540:intron 55.0%
! GCCAAGGGATGCAAGTTGGA+TGG - chr8_1:63625635-63625654 Msa1206540:five_prime_UTR 55.0%
CCCATCCAACTTGCATCCCT+TGG + chr8_1:63625639-63625658 None:intergenic 55.0%
TGCTGGCCCAAGACTGCAAC+AGG - chr8_1:63622909-63622928 Msa1206540:intron 60.0%
GCTTCTTTGCCACCAGTGCC+AGG + chr8_1:63625217-63625236 None:intergenic 60.0%
GGTGGCCCGTTACGCCAAAG+TGG + chr8_1:63621584-63621603 None:intergenic 65.0%
GGGAGCAGGAGCTCTGCCTG+TGG + chr8_1:63625382-63625401 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63619811 63626043 63619811 ID=Msa1206540;Name=Msa1206540
chr8_1 mRNA 63619811 63626043 63619811 ID=Msa1206540-mRNA-1;Parent=Msa1206540;Name=Msa1206540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=459|1|1|1|0.87|0.77|9|572|542
chr8_1 exon 63619811 63620684 63619811 ID=Msa1206540-mRNA-1:exon:20734;Parent=Msa1206540-mRNA-1
chr8_1 exon 63620874 63620985 63620874 ID=Msa1206540-mRNA-1:exon:20733;Parent=Msa1206540-mRNA-1
chr8_1 exon 63621367 63621553 63621367 ID=Msa1206540-mRNA-1:exon:20732;Parent=Msa1206540-mRNA-1
chr8_1 exon 63621717 63621820 63621717 ID=Msa1206540-mRNA-1:exon:20731;Parent=Msa1206540-mRNA-1
chr8_1 exon 63622449 63622521 63622449 ID=Msa1206540-mRNA-1:exon:20730;Parent=Msa1206540-mRNA-1
chr8_1 exon 63622910 63623342 63622910 ID=Msa1206540-mRNA-1:exon:20729;Parent=Msa1206540-mRNA-1
chr8_1 exon 63623901 63624278 63623901 ID=Msa1206540-mRNA-1:exon:20728;Parent=Msa1206540-mRNA-1
chr8_1 exon 63625504 63625703 63625504 ID=Msa1206540-mRNA-1:exon:20727;Parent=Msa1206540-mRNA-1
chr8_1 exon 63625745 63626043 63625745 ID=Msa1206540-mRNA-1:exon:20726;Parent=Msa1206540-mRNA-1
chr8_1 five_prime_UTR 63625745 63626043 63625745 ID=Msa1206540-mRNA-1:five_prime_utr;Parent=Msa1206540-mRNA-1
chr8_1 five_prime_UTR 63625544 63625703 63625544 ID=Msa1206540-mRNA-1:five_prime_utr;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63625504 63625543 63625504 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63623901 63624278 63623901 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63622910 63623342 63622910 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63622449 63622521 63622449 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63621717 63621820 63621717 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63621367 63621553 63621367 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63620874 63620985 63620874 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 CDS 63620383 63620684 63620383 ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1 three_prime_UTR 63619811 63620382 63619811 ID=Msa1206540-mRNA-1:three_prime_utr;Parent=Msa1206540-mRNA-1
Gene Sequence

>Msa1206540

ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTCGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGAACATGTGCCGGGCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACAAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAGCTTGTGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTGAACTACAAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCACCAATTACTGAAGTATCTCCCCGTGGTTGATACTGCTAAATTTCCTGATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTTGGAGGAGACCCTGAAGACTGCAAGACATGTAAAAGGCTTGCATTATCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAACCTGGCACTGGTGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA
Protein sequence

>Msa1206540

MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYKSETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSQLEKLEVLGNHDSSLCSIDLNDVVNYKEFSRNLTNEEQHQLLKYLPVVDTAKFPDSIKIMFDSFQFKEELTYFQKLLEEGVFDISLFGGDPEDCKTCKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKPGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP*