AlfalfaGEDB | Msa1206540

M. sativa cultivar zhongmu-4 / Msa1206540

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206540	XP_024637991.1	97.048	542	16	0	1	542	1	542	0.0	1088

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206540	sp\|Q8W4H1\|GAT26_ARATH	50.188	532	226	15	1	518	1	507	2.54e-138	413

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206540	A0A396IEH1	97.048	542	16	0	1	542	1	542	0.0	1088

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TFs/TRs:

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Gene ID	Type	Classification
Msa1206540	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1206540	Msa1206610	0.998068	2.168378e-255	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206540	MtrunA17_Chr4g0055611	97.048	542	16	0	1	542	1	542	0.0	1088
Msa1206540	MtrunA17_Chr5g0399781	76.680	253	53	4	1	250	1	250	2.36e-127	372
Msa1206540	MtrunA17_Chr5g0399791	61.826	241	80	2	282	522	6	234	1.33e-94	288

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206540	AT4G17570.3	50.752	532	227	14	1	518	1	511	3.28e-144	426
Msa1206540	AT4G17570.1	50.188	532	226	15	1	518	1	507	2.58e-139	413
Msa1206540	AT4G17570.2	49.807	518	225	14	15	518	27	523	9.62e-132	394
Msa1206540	AT5G47140.1	46.341	533	205	13	1	518	1	467	3.81e-119	360

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Find 160 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTGATAGTAAAACC+TGG	0.635517	8_1:-63620636	Msa1206540:CDS
AAACTTCGTTGATGAGAGTT+CGG	0.431868	8_1:-63620517	Msa1206540:CDS
AAAGAGAGAGAATGAGAGGA+AGG	0.520843	8_1:+63625938	None:intergenic
AAATTTAGCAGTATCAACCA+CGG	0.687637	8_1:+63621725	None:intergenic
AACAATGAGGAGTCCCAAAA+GGG	0.557773	8_1:-63620652	Msa1206540:CDS
AACAGGATTGCTGTTGTTCA+TGG	0.347627	8_1:+63623205	None:intergenic
AACCTAGTAAAGATTATTCA+AGG	0.476906	8_1:+63620366	None:intergenic
AAGACTGCAAGACATGTAAA+AGG	0.374366	8_1:-63621424	Msa1206540:CDS
AAGAGTTTAGTTGGCAAGTG+AGG	0.492655	8_1:-63619888	Msa1206540:three_prime_UTR
AAGGAGAAGGGAAGGTGCAA+TGG	0.490917	8_1:+63625915	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTGTACAATACAACTAAG+AGG	-	chr8_1:63619839-63619858	Msa1206540:three_prime_UTR	30.0%
GAATTAGAGAGATTGATAAG+TGG	+	chr8_1:63620018-63620037	None:intergenic	30.0%
TTATGGCTTATATCAGTAGT+GGG	+	chr8_1:63620181-63620200	None:intergenic	30.0%
ACTGATATAAGCCATAAGTT+AGG	-	chr8_1:63620184-63620203	Msa1206540:three_prime_UTR	30.0%
AAAATTGAGATATGTGTTGC+TGG	-	chr8_1:63620511-63620530	Msa1206540:CDS	30.0%
ATTTAAGAGGTCATGTATAC+TGG	+	chr8_1:63621216-63621235	None:intergenic	30.0%
ATCTAGTAACAGGAAGATAT+TGG	-	chr8_1:63621334-63621353	Msa1206540:intron	30.0%
AGATATTGGACAATTTAAGC+AGG	-	chr8_1:63621348-63621367	Msa1206540:intron	30.0%
TGAACTCAGAAAACATCTTA+AGG	+	chr8_1:63621424-63621443	None:intergenic	30.0%
TGTTTATCGGTCTTTCTAAT+TGG	-	chr8_1:63621478-63621497	Msa1206540:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	63619811	63626043	63619811	ID=Msa1206540;Name=Msa1206540
chr8_1	mRNA	63619811	63626043	63619811	ID=Msa1206540-mRNA-1;Parent=Msa1206540;Name=Msa1206540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=459\|1\|1\|1\|0.87\|0.77\|9\|572\|542
chr8_1	exon	63619811	63620684	63619811	ID=Msa1206540-mRNA-1:exon:20734;Parent=Msa1206540-mRNA-1
chr8_1	exon	63620874	63620985	63620874	ID=Msa1206540-mRNA-1:exon:20733;Parent=Msa1206540-mRNA-1
chr8_1	exon	63621367	63621553	63621367	ID=Msa1206540-mRNA-1:exon:20732;Parent=Msa1206540-mRNA-1
chr8_1	exon	63621717	63621820	63621717	ID=Msa1206540-mRNA-1:exon:20731;Parent=Msa1206540-mRNA-1
chr8_1	exon	63622449	63622521	63622449	ID=Msa1206540-mRNA-1:exon:20730;Parent=Msa1206540-mRNA-1
chr8_1	exon	63622910	63623342	63622910	ID=Msa1206540-mRNA-1:exon:20729;Parent=Msa1206540-mRNA-1
chr8_1	exon	63623901	63624278	63623901	ID=Msa1206540-mRNA-1:exon:20728;Parent=Msa1206540-mRNA-1
chr8_1	exon	63625504	63625703	63625504	ID=Msa1206540-mRNA-1:exon:20727;Parent=Msa1206540-mRNA-1
chr8_1	exon	63625745	63626043	63625745	ID=Msa1206540-mRNA-1:exon:20726;Parent=Msa1206540-mRNA-1
chr8_1	five_prime_UTR	63625745	63626043	63625745	ID=Msa1206540-mRNA-1:five_prime_utr;Parent=Msa1206540-mRNA-1
chr8_1	five_prime_UTR	63625544	63625703	63625544	ID=Msa1206540-mRNA-1:five_prime_utr;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63625504	63625543	63625504	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63623901	63624278	63623901	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63622910	63623342	63622910	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63622449	63622521	63622449	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63621717	63621820	63621717	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63621367	63621553	63621367	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63620874	63620985	63620874	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	CDS	63620383	63620684	63620383	ID=Msa1206540-mRNA-1:cds;Parent=Msa1206540-mRNA-1
chr8_1	three_prime_UTR	63619811	63620382	63619811	ID=Msa1206540-mRNA-1:three_prime_utr;Parent=Msa1206540-mRNA-1

Gene Sequence

>Msa1206540

ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTCGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGAACATGTGCCGGGCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACAAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAGCTTGTGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTGAACTACAAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCACCAATTACTGAAGTATCTCCCCGTGGTTGATACTGCTAAATTTCCTGATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTTGGAGGAGACCCTGAAGACTGCAAGACATGTAAAAGGCTTGCATTATCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAACCTGGCACTGGTGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA

Protein sequence

>Msa1206540

MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYKSETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSQLEKLEVLGNHDSSLCSIDLNDVVNYKEFSRNLTNEEQHQLLKYLPVVDTAKFPDSIKIMFDSFQFKEELTYFQKLLEEGVFDISLFGGDPEDCKTCKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKPGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP*