AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206610 MtrunA17_Chr4g0055611 97.048 542 16 0 1 542 1 542 0.0 1088
Msa1206610 MtrunA17_Chr5g0399781 76.680 253 53 4 1 250 1 250 2.36e-127 372
Msa1206610 MtrunA17_Chr5g0399791 61.826 241 80 2 282 522 6 234 1.33e-94 288
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206610 AT4G17570.3 50.752 532 227 14 1 518 1 511 3.28e-144 426
Msa1206610 AT4G17570.1 50.188 532 226 15 1 518 1 507 2.58e-139 413
Msa1206610 AT4G17570.2 49.807 518 225 14 15 518 27 523 9.62e-132 394
Msa1206610 AT5G47140.1 46.341 533 205 13 1 518 1 467 3.81e-119 360

Find 160 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGTCTTGCAGTCTTC+AGG 0.202442 8_1:+63670173 None:intergenic
CCACATGCATTGCATAAAAT+TGG 0.209606 8_1:+63672967 None:intergenic
GATGAACTAGACAATTATTT+TGG 0.224964 8_1:-63668714 Msa1206610:three_prime_UTR
TGAGCAACCAAGCTAGAATT+TGG 0.226392 8_1:+63669177 None:intergenic
GTCCTTCTCGGTCAGTAGTC+TGG 0.257209 8_1:-63672066 Msa1206610:CDS
TGGAATCCTTGATTATATTC+AGG 0.275290 8_1:+63672754 None:intergenic
TATCCTCATCGACAGCCTTT+TGG 0.278578 8_1:+63672734 None:intergenic
AGCTGCTCCTGTTGCAGTCT+TGG 0.279584 8_1:+63671662 None:intergenic
CATTCATCTGAAGAAATAAA+TGG 0.283008 8_1:-63668762 Msa1206610:three_prime_UTR
TAAGAACAAAGAAGTGAAAT+TGG 0.296795 8_1:-63672830 Msa1206610:CDS
CGGGGAGATACTTCAGTAAT+TGG 0.306286 8_1:+63670490 None:intergenic
GTCTTTGATATCTCTTTGTT+TGG 0.309370 8_1:-63670203 Msa1206610:CDS
AATCGTAAAATGTCATGTTT+TGG 0.310105 8_1:+63668678 None:intergenic
AGCTGGAAAACGTAATGATA+TGG 0.322982 8_1:-63669694 Msa1206610:CDS
GCTGCTCCTGTTGCAGTCTT+GGG 0.330451 8_1:+63671663 None:intergenic
TGGCATGAATTTCTCTTCTC+AGG 0.335218 8_1:-63671714 Msa1206610:CDS
TCAGAAAGCTGCGTTCAATT+TGG 0.340455 8_1:-63672673 Msa1206610:CDS
AACAGGATTGCTGTTGTTCA+TGG 0.347627 8_1:+63671951 None:intergenic
TTCAGAAGAAGCAGAGAAAC+AGG 0.359840 8_1:+63671934 None:intergenic
TGCTGGCCCAAGACTGCAAC+AGG 0.360278 8_1:-63671669 Msa1206610:CDS
AAGACTGCAAGACATGTAAA+AGG 0.374366 8_1:-63670169 Msa1206610:CDS
ATACTGCTAAATTTCCTGAT+AGG 0.379031 8_1:-63670461 Msa1206610:intron
GACATGGAAGCATGCTTATT+AGG 0.380641 8_1:-63671862 Msa1206610:CDS
AATGAGGCATATTCGTGTTA+TGG 0.381814 8_1:-63671764 Msa1206610:CDS
TAACCAGATTCTAACCTATC+AGG 0.386767 8_1:+63670447 None:intergenic
GTTCGATAGCTTTCAATTCA+AGG 0.390519 8_1:-63670264 Msa1206610:CDS
CATTTATTTCTTCAGATGAA+TGG 0.391400 8_1:+63668763 None:intergenic
TCCATAGTACATACTCTTCC+AGG 0.393390 8_1:+63669085 None:intergenic
ACGAATATGCCTCATTCATT+AGG 0.397130 8_1:+63671771 None:intergenic
TTTGATATCTCTTTGTTTGG+AGG 0.399259 8_1:-63670200 Msa1206610:CDS
TACATGTCTTGCAGTCTTCA+GGG 0.401258 8_1:+63670174 None:intergenic
GATAATGCTTATGCTGCATC+TGG 0.405843 8_1:-63672787 Msa1206610:CDS
ACAAGCAATAGATCAAGTTC+AGG 0.405979 8_1:-63672712 Msa1206610:CDS
TGGTTAATTTAGGTCCTTCT+CGG 0.410225 8_1:-63672078 Msa1206610:intron
CATTGCGAGGAAATGCAAAT+AGG 0.412981 8_1:+63669310 None:intergenic
TTGGTTATAAAGAGTTTAGT+TGG 0.418646 8_1:-63668642 Msa1206610:three_prime_UTR
TTGGCAATCCAAGCTCAATA+AGG 0.423805 8_1:+63668960 None:intergenic
ATTGCATAAAATTGGCTTCT+CGG 0.425605 8_1:+63672975 None:intergenic
CGTTGATGAGAGTTCGGATC+AGG 0.428748 8_1:-63669256 Msa1206610:CDS
AAACTTCGTTGATGAGAGTT+CGG 0.431868 8_1:-63669262 Msa1206610:CDS
GGAATCCTTGATTATATTCA+GGG 0.435974 8_1:+63672755 None:intergenic
TTTCTCTGCTTCTTCTGAAG+AGG 0.445798 8_1:-63671930 Msa1206610:CDS
GCTTCTTTGCCACCAGTGCC+AGG 0.446048 8_1:+63669363 None:intergenic
ACCTGGAAGAGTATGTACTA+TGG 0.448507 8_1:-63669086 Msa1206610:three_prime_UTR
AGAGAGAATGAGAGGAAGGA+AGG 0.449351 8_1:+63674687 None:intergenic
TTGCATAAAATTGGCTTCTC+GGG 0.450813 8_1:+63672976 None:intergenic
CCGATGGTCTCTGTTGAGAT+AGG 0.451064 8_1:-63671884 Msa1206610:CDS
ACTTGCAACCTTATTGAGCT+TGG 0.456245 8_1:-63668968 Msa1206610:three_prime_UTR
GAGCAACCAAGCTAGAATTT+GGG 0.456850 8_1:+63669178 None:intergenic
CAATGGTGGCTTGCACATGC+TGG 0.457641 8_1:-63669292 Msa1206610:CDS
CCCATCCAACTTGCATCCCT+TGG 0.461584 8_1:+63668941 None:intergenic
GTCCTTGAATAATCTTTACT+AGG 0.465381 8_1:-63669113 Msa1206610:exon
CTCTTCTCAGGGAGTTGCAA+AGG 0.470360 8_1:-63671702 Msa1206610:CDS
ACTGATATAAGCCATAAGTT+AGG 0.472108 8_1:-63674393 Msa1206610:five_prime_UTR
AACCTAGTAAAGATTATTCA+AGG 0.476906 8_1:+63669111 None:intergenic
CCTGCTCCCAAATTCTAGCT+TGG 0.478457 8_1:-63669184 Msa1206610:CDS
GAAAGCTGCGTTCAATTTGG+CGG 0.481959 8_1:-63672670 Msa1206610:CDS
CAACAATGAGGAGTCCCAAA+AGG 0.482639 8_1:-63669398 Msa1206610:CDS
TCCTTCTCGGTCAGTAGTCT+GGG 0.482866 8_1:-63672065 Msa1206610:CDS
GGAAGAGAAAAGAACATTGA+AGG 0.484756 8_1:+63674616 None:intergenic
GGTGGCAAAGAAGCTGTAGA+TGG 0.485633 8_1:-63669354 Msa1206610:CDS
GCCAGTGTAATCACTAAGCA+TGG 0.486056 8_1:+63671733 None:intergenic
AGAGAGAAAAGGAGAAGGGA+AGG 0.487756 8_1:+63674652 None:intergenic
AATTAGAGAGATTGATAAGT+GGG 0.487796 8_1:+63674563 None:intergenic
AAGGAGAAGGGAAGGTGCAA+TGG 0.490917 8_1:+63674660 None:intergenic
AAGAGTTTAGTTGGCAAGTG+AGG 0.492655 8_1:-63668633 Msa1206610:three_prime_UTR
TGTGGAAAAGAATTGTTAGA+TGG 0.494479 8_1:+63669216 None:intergenic
ATTATACTCCTTTACATGCT+CGG 0.500610 8_1:-63672912 Msa1206610:CDS
TGGATGAATAGCTTTATGAA+TGG 0.500950 8_1:-63668742 Msa1206610:three_prime_UTR
GAATAGCTTTATGAATGGAT+AGG 0.503442 8_1:-63668737 Msa1206610:three_prime_UTR
CTATTTGCATTTCCTCGCAA+TGG 0.505348 8_1:-63669309 Msa1206610:CDS
TGAGGAAAAGATTGAGACAT+GGG 0.507698 8_1:-63674284 Msa1206610:exon
TCTGATGAATGAGAGAGAAA+AGG 0.511143 8_1:+63674641 None:intergenic
CATAAAATTGGCTTCTCGGG+TGG 0.513655 8_1:+63672979 None:intergenic
TTGAGGATCAGAGAGTTTCA+AGG 0.515344 8_1:-63672873 Msa1206610:CDS
GCCAAGGGATGCAAGTTGGA+TGG 0.515362 8_1:-63668942 Msa1206610:three_prime_UTR
CAGAAAGGTGGAAACAAAGC+TGG 0.517998 8_1:-63669711 Msa1206610:CDS
AAAGAGAGAGAATGAGAGGA+AGG 0.520843 8_1:+63674683 None:intergenic
GAATGAGAGAGAAAAGGAGA+AGG 0.521112 8_1:+63674647 None:intergenic
AATAGCTTTATGAATGGATA+GGG 0.521302 8_1:-63668736 Msa1206610:three_prime_UTR
GGCATGAATTTCTCTTCTCA+GGG 0.528773 8_1:-63671713 Msa1206610:CDS
AATTCTAGCTTGGTTGCTCA+AGG 0.529989 8_1:-63669174 Msa1206610:CDS
CGAGTATACTGAGCTACTAC+TGG 0.530369 8_1:+63669146 None:intergenic
CGCAACATTACTTGATGCCA+CGG 0.532105 8_1:+63669662 None:intergenic
GGCACACCACTTTGGCGTAA+CGG 0.532158 8_1:-63673003 Msa1206610:CDS
CCAAGGGATGCAAGTTGGAT+GGG 0.536174 8_1:-63668941 Msa1206610:three_prime_UTR
TAAACAATGCCTAATGAATG+AGG 0.536919 8_1:-63671780 Msa1206610:CDS
AATGAGAGAGAAAAGGAGAA+GGG 0.538089 8_1:+63674648 None:intergenic
TTGCAATAGGCACACCACTT+TGG 0.540892 8_1:-63673011 Msa1206610:intron
TTTCAGAAACTTCTCGAGGA+AGG 0.544680 8_1:-63670227 Msa1206610:CDS
CCAAGCTAGAATTTGGGAGC+AGG 0.546142 8_1:+63669184 None:intergenic
ACCTGTCAAATCACTAGCAT+CGG 0.546237 8_1:+63672645 None:intergenic
GCAAAGGTCAGAAACTCTGC+TGG 0.547430 8_1:-63671686 Msa1206610:CDS
CTTATGGCTTATATCAGTAG+TGG 0.547743 8_1:+63674398 None:intergenic
GTATCTGTCCGAGCATGTAA+AGG 0.548439 8_1:+63672904 None:intergenic
AGAAGAATGCTTCAGACGCC+CGG 0.550473 8_1:+63672009 None:intergenic
AATGGTGTTTCTGTGGAAGG+AGG 0.551675 8_1:+63668781 None:intergenic
ACCGATGCTAGTGATTTGAC+AGG 0.552424 8_1:-63672646 Msa1206610:intron
ATGGAAAGAGAGAGAATGAG+AGG 0.556418 8_1:+63674679 None:intergenic
AACAATGAGGAGTCCCAAAA+GGG 0.557773 8_1:-63669397 Msa1206610:CDS
TTCACCCCTGAATATAATCA+AGG 0.559752 8_1:-63672760 Msa1206610:CDS
ACATTACTTGATGCCACGGC+AGG 0.560071 8_1:+63669666 None:intergenic
GATTGCCAAGGGATGCAAGT+TGG 0.561688 8_1:-63668946 Msa1206610:three_prime_UTR
AATCTTTACTAGGTTATACC+TGG 0.562944 8_1:-63669103 Msa1206610:three_prime_UTR
GGATCTCGATGGAGGACAAA+GGG 0.566793 8_1:-63672946 Msa1206610:CDS
TCGTCACGAGCTATAGAGCT+AGG 0.567657 8_1:+63671836 None:intergenic
ATATAATCAAGGATTCCAAA+AGG 0.569920 8_1:-63672749 Msa1206610:CDS
TCTTGTACAATACAACTAAG+AGG 0.575264 8_1:-63674738 Msa1206610:five_prime_UTR
GATTGAGACATGGGAAAACA+AGG 0.576682 8_1:-63674275 Msa1206610:exon
GAATTAGAGAGATTGATAAG+TGG 0.576897 8_1:+63674562 None:intergenic
TTTGCATTTCCTCGCAATGG+TGG 0.577452 8_1:-63669306 Msa1206610:CDS
TTGAGGAAAAGATTGAGACA+TGG 0.577970 8_1:-63674285 Msa1206610:exon
AATTTAGCAGTATCAACCAC+GGG 0.579103 8_1:+63670471 None:intergenic
ATGGTGTTTCTGTGGAAGGA+GGG 0.580700 8_1:+63668782 None:intergenic
TTACAAAAGTGAAACTCCGA+TGG 0.581064 8_1:-63671900 Msa1206610:CDS
TATTGAGCTTGGATTGCCAA+GGG 0.582624 8_1:-63668957 Msa1206610:three_prime_UTR
CAGTGACATTTAATATGTTG+AGG 0.582964 8_1:+63668600 None:intergenic
GCAGCTTTCTGAATTAGAGA+TGG 0.584857 8_1:+63672684 None:intergenic
CAAGCAATAGATCAAGTTCA+GGG 0.586403 8_1:-63672711 Msa1206610:CDS
AGCTCGTGACGAAGAGTCTG+AGG 0.591447 8_1:-63671825 Msa1206610:CDS
GTCTCTGTTGAGATAGGACA+TGG 0.594614 8_1:-63671878 Msa1206610:CDS
ATGCTTATGCTGCATCTGGA+TGG 0.594811 8_1:-63672783 Msa1206610:CDS
ATAGTAAAACCTGGCACTGG+TGG 0.598374 8_1:-63669372 Msa1206610:CDS
TGGATCTCGATGGAGGACAA+AGG 0.599405 8_1:-63672947 Msa1206610:CDS
TCAGATGAATGGTGTTTCTG+TGG 0.600576 8_1:+63668774 None:intergenic
TGCAACAGGAGCAGCTTGTG+TGG 0.602488 8_1:-63671655 Msa1206610:intron
GTGATAGTAAAACCTGGCAC+TGG 0.602888 8_1:-63669375 Msa1206610:CDS
TTATGGCTTATATCAGTAGT+GGG 0.603224 8_1:+63674399 None:intergenic
TACAATTGCATACAAAACAC+TGG 0.603777 8_1:+63668853 None:intergenic
TTATTGAGCTTGGATTGCCA+AGG 0.608489 8_1:-63668958 Msa1206610:three_prime_UTR
CTGCACTCTTTGAATAGCAA+CGG 0.611302 8_1:-63668580 Msa1206610:three_prime_UTR
TAGGAATCTGTACAATCCAA+TGG 0.620481 8_1:+63674595 None:intergenic
CTTCTACGAGTGCAGAAAGG+TGG 0.623014 8_1:-63669723 Msa1206610:intron
ATGAATGGTGTTTCTGTGGA+AGG 0.623129 8_1:+63668778 None:intergenic
GTAACTCCACAGTGAAAGCA+AGG 0.627202 8_1:+63674251 None:intergenic
CCAGTGTAATCACTAAGCAT+GGG 0.628822 8_1:+63671734 None:intergenic
TATCTCTTGTACAAGGACTT+CGG 0.632890 8_1:+63669011 None:intergenic
AAAAGGGTGATAGTAAAACC+TGG 0.635517 8_1:-63669381 Msa1206610:CDS
CATATATATAGCACAAAATG+CGG 0.640585 8_1:-63668887 Msa1206610:three_prime_UTR
CAGAATTGAAGACAACAATG+AGG 0.642781 8_1:-63669410 Msa1206610:CDS
GGGAGCAGGAGCTCTGCCTG+TGG 0.642912 8_1:+63669198 None:intergenic
ATGTGCAAGCCACCATTGCG+AGG 0.645717 8_1:+63669297 None:intergenic
TCCTTGTACAAGAGATACGA+TGG 0.646277 8_1:-63669005 Msa1206610:three_prime_UTR
CCTATCTCAACAGAGACCAT+CGG 0.650405 8_1:+63671884 None:intergenic
GCCATCGTATCTCTTGTACA+AGG 0.652953 8_1:+63669004 None:intergenic
TGATATGGAATCTCCTGCCG+TGG 0.657248 8_1:-63669679 Msa1206610:CDS
CGATAGCTTTCAATTCAAGG+AGG 0.658269 8_1:-63670261 Msa1206610:CDS
GAATCCTTGATTATATTCAG+GGG 0.659607 8_1:+63672756 None:intergenic
ATTCCAAAAGGCTGTCGATG+AGG 0.660779 8_1:-63672737 Msa1206610:CDS
GCAATGCATGTGGATCTCGA+TGG 0.669120 8_1:-63672957 Msa1206610:CDS
GGTGGCCCGTTACGCCAAAG+TGG 0.670404 8_1:+63672997 None:intergenic
CCCATGCTTAGTGATTACAC+TGG 0.670617 8_1:-63671734 Msa1206610:CDS
TAAGACACAAGCAAAACATG+TGG 0.676172 8_1:+63669038 None:intergenic
ATGCATGTGGATCTCGATGG+AGG 0.680507 8_1:-63672954 Msa1206610:CDS
TTAGGATGTAGTGAACTACA+AGG 0.684148 8_1:-63670547 Msa1206610:intron
AAATTTAGCAGTATCAACCA+CGG 0.687637 8_1:+63670470 None:intergenic
CAAGGACCTTGCTTTCACTG+TGG 0.702292 8_1:-63674257 Msa1206610:CDS
GTCAGTAGTCTGGGATACTG+CGG 0.720733 8_1:-63672056 Msa1206610:CDS
ATTACTGAAGTATCTCCCCG+TGG 0.761483 8_1:-63670487 Msa1206610:CDS
ATTTAGCAGTATCAACCACG+GGG 0.799155 8_1:+63670472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACTGTATAT+TGG + chr8_1:63669115-63669134 None:intergenic 10.0%
!!! TTTTTTTTGCTATTTTTTTT+TGG - chr8_1:63669128-63669147 Msa1206610:CDS 10.0%
!! AATATATTATTTGTTTATGT+TGG + chr8_1:63669281-63669300 None:intergenic 10.0%
!!! AAATTTAAAATGATTCATTT+AGG - chr8_1:63669855-63669874 Msa1206610:intron 10.0%
!!! ATATTTGATTTGAATAAAAA+TGG + chr8_1:63672253-63672272 None:intergenic 10.0%
!!! TTTTGTAATAATTTCATATT+CGG + chr8_1:63673762-63673781 None:intergenic 10.0%
!!! TTAAAGTATTTTGTAAATGA+AGG - chr8_1:63670994-63671013 Msa1206610:intron 15.0%
!!! CATATTAATATAATGTGTTT+TGG - chr8_1:63672322-63672341 Msa1206610:intron 15.0%
!!! AAATGATTTTTAATACTGTT+TGG - chr8_1:63672407-63672426 Msa1206610:intron 15.0%
!!! AATGATTTTTAATACTGTTT+GGG - chr8_1:63672408-63672427 Msa1206610:intron 15.0%
!! TCTTAAAAATAAAAAAGGAT+AGG + chr8_1:63673532-63673551 None:intergenic 15.0%
!! CTAACTCTTAAAAATAAAAA+AGG + chr8_1:63673537-63673556 None:intergenic 15.0%
!!! TATGGACATAATTTTATATT+TGG - chr8_1:63674254-63674273 Msa1206610:CDS 15.0%
!!! CATAATTTTATATTTGGTTA+CGG - chr8_1:63674260-63674279 Msa1206610:CDS 15.0%
!!! GTAAAAAAAAAGCACTTTTA+AGG - chr8_1:63668807-63668826 Msa1206610:three_prime_UTR 20.0%
!! GAATCATAAACAAATGTAAT+TGG - chr8_1:63669439-63669458 Msa1206610:intron 20.0%
!! AATATGATAAAGGATAATCA+TGG + chr8_1:63669663-63669682 None:intergenic 20.0%
!! AAAGCTTCAAAATATGATAA+AGG + chr8_1:63669673-63669692 None:intergenic 20.0%
!! TAAATTCATCAAGCAAATAT+GGG + chr8_1:63669991-63670010 None:intergenic 20.0%
!! ATAAATTCATCAAGCAAATA+TGG + chr8_1:63669992-63670011 None:intergenic 20.0%
!! TATGTAAAATATCTAGTAAC+AGG - chr8_1:63670068-63670087 Msa1206610:intron 20.0%
!! TGTGATTGTTAATTGTTTAT+CGG - chr8_1:63670209-63670228 Msa1206610:CDS 20.0%
!!! TTGCTTTTATTAAAGAAACA+AGG + chr8_1:63671203-63671222 None:intergenic 20.0%
!! TAACTCTAATAACAATAGTT+TGG - chr8_1:63671224-63671243 Msa1206610:CDS 20.0%
!! AACAATAGTTTGGTTAATTT+AGG - chr8_1:63671234-63671253 Msa1206610:CDS 20.0%
!! AAATATTAGAGATAAAACTG+TGG - chr8_1:63671983-63672002 Msa1206610:CDS 20.0%
!! GAATAACTATTAAGTCTTAA+AGG + chr8_1:63672042-63672061 None:intergenic 20.0%
!!! TTATTCCTTTTTGAAATTTC+AGG - chr8_1:63672056-63672075 Msa1206610:CDS 20.0%
!!! TATTCCTTTTTGAAATTTCA+GGG - chr8_1:63672057-63672076 Msa1206610:CDS 20.0%
!!! AAATGATATGATCATGATTT+TGG - chr8_1:63672450-63672469 Msa1206610:intron 20.0%
!!! AATGATATGATCATGATTTT+GGG - chr8_1:63672451-63672470 Msa1206610:intron 20.0%
!!! TCTACAAAGCATTTATAATT+AGG - chr8_1:63672493-63672512 Msa1206610:intron 20.0%
!! AACATAACAAATTGACATTA+TGG - chr8_1:63672607-63672626 Msa1206610:intron 20.0%
!!! ACATTATGGTTTGATTTAAT+TGG - chr8_1:63672621-63672640 Msa1206610:intron 20.0%
!!! TTCAGCATTCATTAATTTTA+TGG + chr8_1:63672734-63672753 None:intergenic 20.0%
!! AAAATTGAAACTTATGTCAA+AGG + chr8_1:63672973-63672992 None:intergenic 20.0%
!! CATATCATTCATATTTATTC+AGG + chr8_1:63673416-63673435 None:intergenic 20.0%
!!! AAAGCTTAACATATTTTGTT+TGG - chr8_1:63673464-63673483 Msa1206610:intron 20.0%
!!! TTAACATATTTTGTTTGGTT+TGG - chr8_1:63673469-63673488 Msa1206610:intron 20.0%
! AATTAGAGAGATTGATAAGT+GGG + chr8_1:63668762-63668781 None:intergenic 25.0%
! TTAAAAACAAAAACTGCTTC+TGG - chr8_1:63668832-63668851 Msa1206610:three_prime_UTR 25.0%
! TAAAAACAAAAACTGCTTCT+GGG - chr8_1:63668833-63668852 Msa1206610:three_prime_UTR 25.0%
!! TTTTTGTTCAAAACTGTTTC+TGG - chr8_1:63668873-63668892 Msa1206610:three_prime_UTR 25.0%
!!! TTTTGTTCAAAACTGTTTCT+GGG - chr8_1:63668874-63668893 Msa1206610:three_prime_UTR 25.0%
!!! TGTTTTTTAAGCCTAACTTA+TGG + chr8_1:63668943-63668962 None:intergenic 25.0%
!! AATCTTTTCCTCAAACAAAA+GGG + chr8_1:63669031-63669050 None:intergenic 25.0%
! TAGTTCACTTATTTCACATT+TGG - chr8_1:63669536-63669555 Msa1206610:intron 25.0%
! GAACATAAGAAAAAGAAAAG+AGG - chr8_1:63669569-63669588 Msa1206610:intron 25.0%
! AAAAAGAAAAGAGGATAATG+TGG - chr8_1:63669578-63669597 Msa1206610:intron 25.0%
! TTGATGAATTTATTGCATAC+CGG - chr8_1:63669999-63670018 Msa1206610:intron 25.0%
! TATCAGTATTCAAGATCATA+AGG + chr8_1:63670129-63670148 None:intergenic 25.0%
! TAACAAATAATCCTTGCAAT+AGG - chr8_1:63670298-63670317 Msa1206610:intron 25.0%
! TAAGAACAAAGAAGTGAAAT+TGG - chr8_1:63670492-63670511 Msa1206610:CDS 25.0%
! ATATAATCAAGGATTCCAAA+AGG - chr8_1:63670573-63670592 Msa1206610:intron 25.0%
! TCTATAGTATTTCAACTGAA+AGG + chr8_1:63670769-63670788 None:intergenic 25.0%
! TTGATTATGCTCAAACAAAT+AGG + chr8_1:63670804-63670823 None:intergenic 25.0%
!! TCAAGAAGTGCATAATAAAA+TGG - chr8_1:63670820-63670839 Msa1206610:intron 25.0%
!! CAAGAAGTGCATAATAAAAT+GGG - chr8_1:63670821-63670840 Msa1206610:intron 25.0%
!! AAGAAGTGCATAATAAAATG+GGG - chr8_1:63670822-63670841 Msa1206610:intron 25.0%
! ATGAATAGTCTTTGTACATA+TGG - chr8_1:63671950-63671969 Msa1206610:CDS 25.0%
!!! TAAAACTGTGGAATTTGTTT+TGG - chr8_1:63671995-63672014 Msa1206610:CDS 25.0%
!!! CTTTTTTTTCCCTCTTTTTA+TGG - chr8_1:63672169-63672188 Msa1206610:intron 25.0%
! TCAAATATTCTATCCTAACA+TGG - chr8_1:63672265-63672284 Msa1206610:intron 25.0%
! ATAATTTCATGCATTACTCT+TGG - chr8_1:63672358-63672377 Msa1206610:intron 25.0%
! TAATTTCATGCATTACTCTT+GGG - chr8_1:63672359-63672378 Msa1206610:intron 25.0%
! TTTCACCATATAGATATTTG+TGG - chr8_1:63672568-63672587 Msa1206610:intron 25.0%
! AACCTCTTACAATTGTATAT+TGG - chr8_1:63672679-63672698 Msa1206610:CDS 25.0%
! TCTTACAATTGTATATTGGT+CGG - chr8_1:63672683-63672702 Msa1206610:CDS 25.0%
!! ATAACTTTTATTCCCTATTC+CGG + chr8_1:63673002-63673021 None:intergenic 25.0%
!! AGAACACTATAATTTTCTCA+AGG - chr8_1:63673211-63673230 Msa1206610:intron 25.0%
!!! AATTTGACTTGAGATACAAT+TGG - chr8_1:63673384-63673403 Msa1206610:intron 25.0%
! TTGGTTTCAAAATTTGTATC+TGG - chr8_1:63673498-63673517 Msa1206610:intron 25.0%
!!! AACCTGGAAAATTTTGATTT+TGG + chr8_1:63673709-63673728 None:intergenic 25.0%
! ATTGATGTGTTTCAAAGTAA+AGG + chr8_1:63673803-63673822 None:intergenic 25.0%
! AACCTAGTAAAGATTATTCA+AGG + chr8_1:63674214-63674233 None:intergenic 25.0%
! CATATATATAGCACAAAATG+CGG - chr8_1:63674435-63674454 Msa1206610:intron 25.0%
!! CATTTATTTCTTCAGATGAA+TGG + chr8_1:63674562-63674581 None:intergenic 25.0%
! CATTCATCTGAAGAAATAAA+TGG - chr8_1:63674560-63674579 Msa1206610:five_prime_UTR 25.0%
!!! AATAGCTTTATGAATGGATA+GGG - chr8_1:63674586-63674605 Msa1206610:five_prime_UTR 25.0%
!! GATGAACTAGACAATTATTT+TGG - chr8_1:63674608-63674627 Msa1206610:five_prime_UTR 25.0%
!! AATCGTAAAATGTCATGTTT+TGG + chr8_1:63674647-63674666 None:intergenic 25.0%
!! AAACATGACATTTTACGATT+AGG - chr8_1:63674647-63674666 Msa1206610:five_prime_UTR 25.0%
! TTGGTTATAAAGAGTTTAGT+TGG - chr8_1:63674680-63674699 Msa1206610:five_prime_UTR 25.0%
TCTTGTACAATACAACTAAG+AGG - chr8_1:63668584-63668603 Msa1206610:three_prime_UTR 30.0%
! AATGTTCTTTTCTCTTCCAT+TGG - chr8_1:63668711-63668730 Msa1206610:three_prime_UTR 30.0%
GAATTAGAGAGATTGATAAG+TGG + chr8_1:63668763-63668782 None:intergenic 30.0%
TTATGGCTTATATCAGTAGT+GGG + chr8_1:63668926-63668945 None:intergenic 30.0%
ACTGATATAAGCCATAAGTT+AGG - chr8_1:63668929-63668948 Msa1206610:three_prime_UTR 30.0%
!! TTTATTTGCCCTTTTGTTTG+AGG - chr8_1:63669020-63669039 Msa1206610:three_prime_UTR 30.0%
! CAATCTTTTCCTCAAACAAA+AGG + chr8_1:63669032-63669051 None:intergenic 30.0%
AAAATTGAGATATGTGTTGC+TGG - chr8_1:63669255-63669274 Msa1206610:CDS 30.0%
!! TTGTTGTTGTCTAGTGTTTT+GGG - chr8_1:63669315-63669334 Msa1206610:CDS 30.0%
!! ATCCACTCATGTGTTTTAAA+AGG - chr8_1:63669624-63669643 Msa1206610:CDS 30.0%
!!! ATCCTTTTAAAACACATGAG+TGG + chr8_1:63669629-63669648 None:intergenic 30.0%
ATTTAAGAGGTCATGTATAC+TGG + chr8_1:63669960-63669979 None:intergenic 30.0%
! TATCTTCTTTTCCTTGCAAA+AGG - chr8_1:63670022-63670041 Msa1206610:intron 30.0%
! ATCTTCTTTTCCTTGCAAAA+GGG - chr8_1:63670023-63670042 Msa1206610:intron 30.0%
ATCTAGTAACAGGAAGATAT+TGG - chr8_1:63670078-63670097 Msa1206610:intron 30.0%
AGATATTGGACAATTTAAGC+AGG - chr8_1:63670092-63670111 Msa1206610:intron 30.0%
TGAACTCAGAAAACATCTTA+AGG + chr8_1:63670168-63670187 None:intergenic 30.0%
TGTTTATCGGTCTTTCTAAT+TGG - chr8_1:63670222-63670241 Msa1206610:CDS 30.0%
! ATTGCATAAAATTGGCTTCT+CGG + chr8_1:63670350-63670369 None:intergenic 30.0%
ATTATACTCCTTTACATGCT+CGG - chr8_1:63670410-63670429 Msa1206610:intron 30.0%
GAATCCTTGATTATATTCAG+GGG + chr8_1:63670569-63670588 None:intergenic 30.0%
GGAATCCTTGATTATATTCA+GGG + chr8_1:63670570-63670589 None:intergenic 30.0%
TGGAATCCTTGATTATATTC+AGG + chr8_1:63670571-63670590 None:intergenic 30.0%
GAATTGCAAATGAACATATG+AGG - chr8_1:63670869-63670888 Msa1206610:intron 30.0%
! TGATAACTTGTCTTCCTTTA+GGG + chr8_1:63670904-63670923 None:intergenic 30.0%
! ATGATAACTTGTCTTCCTTT+AGG + chr8_1:63670905-63670924 None:intergenic 30.0%
TTATCATTGCTTCAAAGTTC+TGG - chr8_1:63670918-63670937 Msa1206610:intron 30.0%
TAAACAATGCCTAATGAATG+AGG - chr8_1:63671542-63671561 Msa1206610:intron 30.0%
CATATGTGTAACTTTAGTAG+TGG + chr8_1:63671848-63671867 None:intergenic 30.0%
TTGTCCCTGAAATTTCAAAA+AGG + chr8_1:63672064-63672083 None:intergenic 30.0%
CTTGAAAAACTAGAAGTTCT+TGG - chr8_1:63672091-63672110 Msa1206610:intron 30.0%
CCAAACAATCCATAAAAAGA+GGG + chr8_1:63672181-63672200 None:intergenic 30.0%
! TTTTAATACTGTTTGGGAGT+AGG - chr8_1:63672414-63672433 Msa1206610:intron 30.0%
CATCTCCACAAATATCTATA+TGG + chr8_1:63672576-63672595 None:intergenic 30.0%
GACCAATATACAATTGTAAG+AGG + chr8_1:63672684-63672703 None:intergenic 30.0%
AATGCAATATCTGTCATGTT+TGG - chr8_1:63672752-63672771 Msa1206610:CDS 30.0%
AATATCTGTCATGTTTGGTT+AGG - chr8_1:63672757-63672776 Msa1206610:CDS 30.0%
AAATTTAGCAGTATCAACCA+CGG + chr8_1:63672855-63672874 None:intergenic 30.0%
ATACTGCTAAATTTCCTGAT+AGG - chr8_1:63672861-63672880 Msa1206610:CDS 30.0%
! AAGTTTCAATTTTGTCTCTC+CGG - chr8_1:63672980-63672999 Msa1206610:CDS 30.0%
AGGGAATAAAAGTTATTGAC+CGG - chr8_1:63673006-63673025 Msa1206610:intron 30.0%
! TTATTTTCAGAAACTTCTCG+AGG - chr8_1:63673091-63673110 Msa1206610:intron 30.0%
GTCTTTGATATCTCTTTGTT+TGG - chr8_1:63673119-63673138 Msa1206610:intron 30.0%
! TTTGATATCTCTTTGTTTGG+AGG - chr8_1:63673122-63673141 Msa1206610:intron 30.0%
!!! TTAGTTTTGCCAGTTTAGAT+TGG - chr8_1:63673553-63673572 Msa1206610:intron 30.0%
TGAACTAATCCAATCTAAAC+TGG + chr8_1:63673565-63673584 None:intergenic 30.0%
! AGCCAAAATCAAAATTTTCC+AGG - chr8_1:63673704-63673723 Msa1206610:intron 30.0%
ACAACTGATAACAATAACAC+AGG + chr8_1:63673841-63673860 None:intergenic 30.0%
!! CAATTCTGAAATTTGCAAGA+TGG + chr8_1:63673900-63673919 None:intergenic 30.0%
TGTGGAAAAGAATTGTTAGA+TGG + chr8_1:63674109-63674128 None:intergenic 30.0%
! ATCTAACAATTCTTTTCCAC+AGG - chr8_1:63674108-63674127 Msa1206610:intron 30.0%
GTCCTTGAATAATCTTTACT+AGG - chr8_1:63674209-63674228 Msa1206610:intron 30.0%
AATCTTTACTAGGTTATACC+TGG - chr8_1:63674219-63674238 Msa1206610:intron 30.0%
TACAATTGCATACAAAACAC+TGG + chr8_1:63674472-63674491 None:intergenic 30.0%
!! TGGATGAATAGCTTTATGAA+TGG - chr8_1:63674580-63674599 Msa1206610:five_prime_UTR 30.0%
!! GAATAGCTTTATGAATGGAT+AGG - chr8_1:63674585-63674604 Msa1206610:five_prime_UTR 30.0%
!! ACGATTAGGATTTTAGTGTT+TGG - chr8_1:63674661-63674680 Msa1206610:five_prime_UTR 30.0%
CAGTGACATTTAATATGTTG+AGG + chr8_1:63674725-63674744 None:intergenic 30.0%
AATGAGAGAGAAAAGGAGAA+GGG + chr8_1:63668677-63668696 None:intergenic 35.0%
TCTGATGAATGAGAGAGAAA+AGG + chr8_1:63668684-63668703 None:intergenic 35.0%
GGAAGAGAAAAGAACATTGA+AGG + chr8_1:63668709-63668728 None:intergenic 35.0%
TAGGAATCTGTACAATCCAA+TGG + chr8_1:63668730-63668749 None:intergenic 35.0%
CTTATGGCTTATATCAGTAG+TGG + chr8_1:63668927-63668946 None:intergenic 35.0%
TTGAGGAAAAGATTGAGACA+TGG - chr8_1:63669037-63669056 Msa1206610:three_prime_UTR 35.0%
TGAGGAAAAGATTGAGACAT+GGG - chr8_1:63669038-63669057 Msa1206610:three_prime_UTR 35.0%
!! GTTGTTGTTGTCTAGTGTTT+TGG - chr8_1:63669314-63669333 Msa1206610:CDS 35.0%
GACACAAAACACATCAAAGT+AGG + chr8_1:63669372-63669391 None:intergenic 35.0%
TCAGAATCTGTTGAATGCAT+AGG - chr8_1:63669475-63669494 Msa1206610:intron 35.0%
TGGATTTGTGAAATGTCCAT+TGG - chr8_1:63669598-63669617 Msa1206610:intron 35.0%
!! TTGCAGGATTAGTTCTATTG+AGG + chr8_1:63669738-63669757 None:intergenic 35.0%
TCAATAGAACTAATCCTGCA+AGG - chr8_1:63669737-63669756 Msa1206610:intron 35.0%
ATGCTTGGATTTGAACCAAA+AGG + chr8_1:63669926-63669945 None:intergenic 35.0%
ATGGGTGAACTCAATTTAAG+AGG + chr8_1:63669973-63669992 None:intergenic 35.0%
TTGCAAGGAAAAGAAGATAC+CGG + chr8_1:63670021-63670040 None:intergenic 35.0%
TTGGACAATTTAAGCAGGAA+TGG - chr8_1:63670097-63670116 Msa1206610:intron 35.0%
! GTTTTCTGAGTTCAGTTTTG+TGG - chr8_1:63670174-63670193 Msa1206610:CDS 35.0%
! TCTCTTTTCTTGTGTACAAG+AGG - chr8_1:63670251-63670270 Msa1206610:CDS 35.0%
! CTCTTTTCTTGTGTACAAGA+GGG - chr8_1:63670252-63670271 Msa1206610:CDS 35.0%
! TTGCATAAAATTGGCTTCTC+GGG + chr8_1:63670349-63670368 None:intergenic 35.0%
CCACATGCATTGCATAAAAT+TGG + chr8_1:63670358-63670377 None:intergenic 35.0%
! CCAATTTTATGCAATGCATG+TGG - chr8_1:63670355-63670374 Msa1206610:intron 35.0%
TTCACCCCTGAATATAATCA+AGG - chr8_1:63670562-63670581 Msa1206610:intron 35.0%
ACAAGCAATAGATCAAGTTC+AGG - chr8_1:63670610-63670629 Msa1206610:intron 35.0%
CAAGCAATAGATCAAGTTCA+GGG - chr8_1:63670611-63670630 Msa1206610:intron 35.0%
TGTTTCTTCATAACCGATCA+TGG - chr8_1:63670734-63670753 Msa1206610:intron 35.0%
GTGTCTCAAAACAATTGCAA+TGG - chr8_1:63671024-63671043 Msa1206610:intron 35.0%
CGTGAAGATTTGCATATATG+AGG - chr8_1:63671108-63671127 Msa1206610:intron 35.0%
TGGTTAATTTAGGTCCTTCT+CGG - chr8_1:63671244-63671263 Msa1206610:CDS 35.0%
!!! GCACATGTTCTCTTTTTTGA+AGG + chr8_1:63671294-63671313 None:intergenic 35.0%
TCAAAAAAGAGAACATGTGC+CGG - chr8_1:63671294-63671313 Msa1206610:intron 35.0%
TTACAAAAGTGAAACTCCGA+TGG - chr8_1:63671422-63671441 Msa1206610:intron 35.0%
ACGAATATGCCTCATTCATT+AGG + chr8_1:63671554-63671573 None:intergenic 35.0%
AATGAGGCATATTCGTGTTA+TGG - chr8_1:63671558-63671577 Msa1206610:intron 35.0%
! TTGATAGTATTCTCCTGAAG+TGG - chr8_1:63671906-63671925 Msa1206610:CDS 35.0%
!! CCCTCTTTTTATGGATTGTT+TGG - chr8_1:63672178-63672197 Msa1206610:intron 35.0%
GCCAAACAATCCATAAAAAG+AGG + chr8_1:63672182-63672201 None:intergenic 35.0%
! TTAGTACTTGCTACAAGACT+GGG + chr8_1:63672228-63672247 None:intergenic 35.0%
! TTTAGTACTTGCTACAAGAC+TGG + chr8_1:63672229-63672248 None:intergenic 35.0%
TTAGGATGTAGTGAACTACA+AGG - chr8_1:63672775-63672794 Msa1206610:CDS 35.0%
AATTTAGCAGTATCAACCAC+GGG + chr8_1:63672854-63672873 None:intergenic 35.0%
TTTCCTGATAGGTTAGAATC+TGG - chr8_1:63672872-63672891 Msa1206610:CDS 35.0%
TAACCAGATTCTAACCTATC+AGG + chr8_1:63672878-63672897 None:intergenic 35.0%
! AATTTTGTCTCTCCGGAATA+GGG - chr8_1:63672987-63673006 Msa1206610:CDS 35.0%
GTTCGATAGCTTTCAATTCA+AGG - chr8_1:63673058-63673077 Msa1206610:intron 35.0%
AAGACTGCAAGACATGTAAA+AGG - chr8_1:63673153-63673172 Msa1206610:intron 35.0%
! AATTTTCTCAAGGTTTGTGC+TGG - chr8_1:63673221-63673240 Msa1206610:intron 35.0%
CTTGTCAGATATCACATCTA+GGG - chr8_1:63673301-63673320 Msa1206610:intron 35.0%
TTGTCAGATATCACATCTAG+GGG - chr8_1:63673302-63673321 Msa1206610:intron 35.0%
!! TTGTTTGGTTTGGATGTAGT+TGG - chr8_1:63673479-63673498 Msa1206610:intron 35.0%
AGCTGGAAAACGTAATGATA+TGG - chr8_1:63673628-63673647 Msa1206610:intron 35.0%
CAGAATTGAAGACAACAATG+AGG - chr8_1:63673912-63673931 Msa1206610:intron 35.0%
! GGTTTTACTATCACCCTTTT+GGG + chr8_1:63673941-63673960 None:intergenic 35.0%
! AGGTTTTACTATCACCCTTT+TGG + chr8_1:63673942-63673961 None:intergenic 35.0%
AAAAGGGTGATAGTAAAACC+TGG - chr8_1:63673941-63673960 Msa1206610:intron 35.0%
! GGAAATGCAAATAGGCTTTT+CGG + chr8_1:63674007-63674026 None:intergenic 35.0%
! AAACTTCGTTGATGAGAGTT+CGG - chr8_1:63674060-63674079 Msa1206610:intron 35.0%
TAAGACACAAGCAAAACATG+TGG + chr8_1:63674287-63674306 None:intergenic 35.0%
TATCTCTTGTACAAGGACTT+CGG + chr8_1:63674314-63674333 None:intergenic 35.0%
!!! TTGGATGGGCTATTTTGTAT+AGG - chr8_1:63674395-63674414 Msa1206610:five_prime_UTR 35.0%
AAAGAGAGAGAATGAGAGGA+AGG + chr8_1:63668642-63668661 None:intergenic 40.0%
ATGGAAAGAGAGAGAATGAG+AGG + chr8_1:63668646-63668665 None:intergenic 40.0%
GAATGAGAGAGAAAAGGAGA+AGG + chr8_1:63668678-63668697 None:intergenic 40.0%
!!! GATAAGTGGGTGTTTTAGCT+AGG + chr8_1:63668749-63668768 None:intergenic 40.0%
GATTGAGACATGGGAAAACA+AGG - chr8_1:63669047-63669066 Msa1206610:three_prime_UTR 40.0%
! CAAAGTCTGTTTTGCAACCT+TGG - chr8_1:63669213-63669232 Msa1206610:CDS 40.0%
CAATATCACAATCAGTGCCA+AGG + chr8_1:63669233-63669252 None:intergenic 40.0%
!!! GTTGTCTAGTGTTTTGGGAT+TGG - chr8_1:63669320-63669339 Msa1206610:CDS 40.0%
!! CACATGAGTGGATTAACCAA+TGG + chr8_1:63669617-63669636 None:intergenic 40.0%
AATGTTGAAGTCGTTGCTGT+TGG - chr8_1:63669821-63669840 Msa1206610:intron 40.0%
AACATTGATGCTGCGATACT+AGG - chr8_1:63669885-63669904 Msa1206610:intron 40.0%
! CGGATAAATGCTAAGCCTTT+TGG - chr8_1:63669908-63669927 Msa1206610:intron 40.0%
CTGGTAAGTAAGACAATGCT+TGG + chr8_1:63669941-63669960 None:intergenic 40.0%
!!! GACAGATACTGTCGATTTTG+AGG - chr8_1:63670432-63670451 Msa1206610:intron 40.0%
TTGAGGATCAGAGAGTTTCA+AGG - chr8_1:63670449-63670468 Msa1206610:intron 40.0%
GATAATGCTTATGCTGCATC+TGG - chr8_1:63670535-63670554 Msa1206610:CDS 40.0%
GCAGCTTTCTGAATTAGAGA+TGG + chr8_1:63670641-63670660 None:intergenic 40.0%
TCAGAAAGCTGCGTTCAATT+TGG - chr8_1:63670649-63670668 Msa1206610:intron 40.0%
ACCTGTCAAATCACTAGCAT+CGG + chr8_1:63670680-63670699 None:intergenic 40.0%
ATGCTAGTGATTTGACAGGT+TGG - chr8_1:63670680-63670699 Msa1206610:intron 40.0%
! GTCTTCCTTTAGGGAAACAA+AGG + chr8_1:63670895-63670914 None:intergenic 40.0%
ATCTACTGCAGCTCAAAAAC+AGG - chr8_1:63671174-63671193 Msa1206610:intron 40.0%
CAAAAAAGAGAACATGTGCC+GGG - chr8_1:63671295-63671314 Msa1206610:intron 40.0%
! AACAGGATTGCTGTTGTTCA+TGG + chr8_1:63671374-63671393 None:intergenic 40.0%
TTCAGAAGAAGCAGAGAAAC+AGG + chr8_1:63671391-63671410 None:intergenic 40.0%
! TTTCTCTGCTTCTTCTGAAG+AGG - chr8_1:63671392-63671411 Msa1206610:intron 40.0%
! GACATGGAAGCATGCTTATT+AGG - chr8_1:63671460-63671479 Msa1206610:intron 40.0%
CCAGTGTAATCACTAAGCAT+GGG + chr8_1:63671591-63671610 None:intergenic 40.0%
TGGCATGAATTTCTCTTCTC+AGG - chr8_1:63671608-63671627 Msa1206610:intron 40.0%
GGCATGAATTTCTCTTCTCA+GGG - chr8_1:63671609-63671628 Msa1206610:intron 40.0%
TAAGATCTTCGTACCACTTC+AGG + chr8_1:63671922-63671941 None:intergenic 40.0%
GGTTAATTGCTATGCACTGA+TGG + chr8_1:63672663-63672682 None:intergenic 40.0%
ATTTAGCAGTATCAACCACG+GGG + chr8_1:63672853-63672872 None:intergenic 40.0%
! CAATTTTGTCTCTCCGGAAT+AGG - chr8_1:63672986-63673005 Msa1206610:CDS 40.0%
CGATAGCTTTCAATTCAAGG+AGG - chr8_1:63673061-63673080 Msa1206610:intron 40.0%
TTTCAGAAACTTCTCGAGGA+AGG - chr8_1:63673095-63673114 Msa1206610:intron 40.0%
TACATGTCTTGCAGTCTTCA+GGG + chr8_1:63673151-63673170 None:intergenic 40.0%
TTACATGTCTTGCAGTCTTC+AGG + chr8_1:63673152-63673171 None:intergenic 40.0%
GCTTGTCAGATATCACATCT+AGG - chr8_1:63673300-63673319 Msa1206610:intron 40.0%
ATTCTTCTACGAGTGCAGAA+AGG - chr8_1:63673596-63673615 Msa1206610:intron 40.0%
! GACAAGAGATTTTGCTAACC+TGG + chr8_1:63673725-63673744 None:intergenic 40.0%
AACAATGAGGAGTCCCAAAA+GGG - chr8_1:63673925-63673944 Msa1206610:intron 40.0%
CATTGCGAGGAAATGCAAAT+AGG + chr8_1:63674015-63674034 None:intergenic 40.0%
CTATTTGCATTTCCTCGCAA+TGG - chr8_1:63674013-63674032 Msa1206610:intron 40.0%
GAGCAACCAAGCTAGAATTT+GGG + chr8_1:63674147-63674166 None:intergenic 40.0%
TGAGCAACCAAGCTAGAATT+TGG + chr8_1:63674148-63674167 None:intergenic 40.0%
!! AATTCTAGCTTGGTTGCTCA+AGG - chr8_1:63674148-63674167 Msa1206610:intron 40.0%
! ACCTGGAAGAGTATGTACTA+TGG - chr8_1:63674236-63674255 Msa1206610:intron 40.0%
TCCATAGTACATACTCTTCC+AGG + chr8_1:63674240-63674259 None:intergenic 40.0%
TCCTTGTACAAGAGATACGA+TGG - chr8_1:63674317-63674336 Msa1206610:five_prime_UTR 40.0%
ACTTGCAACCTTATTGAGCT+TGG - chr8_1:63674354-63674373 Msa1206610:five_prime_UTR 40.0%
TTGGCAATCCAAGCTCAATA+AGG + chr8_1:63674365-63674384 None:intergenic 40.0%
TTATTGAGCTTGGATTGCCA+AGG - chr8_1:63674364-63674383 Msa1206610:five_prime_UTR 40.0%
TATTGAGCTTGGATTGCCAA+GGG - chr8_1:63674365-63674384 Msa1206610:five_prime_UTR 40.0%
! ATGAATGGTGTTTCTGTGGA+AGG + chr8_1:63674547-63674566 None:intergenic 40.0%
! TCAGATGAATGGTGTTTCTG+TGG + chr8_1:63674551-63674570 None:intergenic 40.0%
AAGAGTTTAGTTGGCAAGTG+AGG - chr8_1:63674689-63674708 Msa1206610:five_prime_UTR 40.0%
CTGCACTCTTTGAATAGCAA+CGG - chr8_1:63674742-63674761 Msa1206610:five_prime_UTR 40.0%
AGAGAGAATGAGAGGAAGGA+AGG + chr8_1:63668638-63668657 None:intergenic 45.0%
AGAGAGAAAAGGAGAAGGGA+AGG + chr8_1:63668673-63668692 None:intergenic 45.0%
GTAACTCCACAGTGAAAGCA+AGG + chr8_1:63669074-63669093 None:intergenic 45.0%
TTTAAGAGTTGCAGCCTTGC+AGG + chr8_1:63669754-63669773 None:intergenic 45.0%
ATTGATGCTGCGATACTAGG+CGG - chr8_1:63669888-63669907 Msa1206610:intron 45.0%
AAAGTGGTGTGCCTATTGCA+AGG + chr8_1:63670312-63670331 None:intergenic 45.0%
TTGCAATAGGCACACCACTT+TGG - chr8_1:63670311-63670330 Msa1206610:intron 45.0%
! CATAAAATTGGCTTCTCGGG+TGG + chr8_1:63670346-63670365 None:intergenic 45.0%
GTATCTGTCCGAGCATGTAA+AGG + chr8_1:63670421-63670440 None:intergenic 45.0%
ATGCTTATGCTGCATCTGGA+TGG - chr8_1:63670539-63670558 Msa1206610:CDS 45.0%
ATTCCAAAAGGCTGTCGATG+AGG - chr8_1:63670585-63670604 Msa1206610:intron 45.0%
! TATCCTCATCGACAGCCTTT+TGG + chr8_1:63670591-63670610 None:intergenic 45.0%
GAAAGCTGCGTTCAATTTGG+CGG - chr8_1:63670652-63670671 Msa1206610:intron 45.0%
ACCGATGCTAGTGATTTGAC+AGG - chr8_1:63670676-63670695 Msa1206610:intron 45.0%
AAGGACAATGCTGCCATGAT+CGG + chr8_1:63670750-63670769 None:intergenic 45.0%
! TGAGGCCTTTGTTTCCCTAA+AGG - chr8_1:63670887-63670906 Msa1206610:intron 45.0%
CCTATCTCAACAGAGACCAT+CGG + chr8_1:63671441-63671460 None:intergenic 45.0%
GTCTCTGTTGAGATAGGACA+TGG - chr8_1:63671444-63671463 Msa1206610:intron 45.0%
CCCATGCTTAGTGATTACAC+TGG - chr8_1:63671588-63671607 Msa1206610:intron 45.0%
GCCAGTGTAATCACTAAGCA+TGG + chr8_1:63671592-63671611 None:intergenic 45.0%
ACACTGCAGCAAACCATGTT+AGG + chr8_1:63672281-63672300 None:intergenic 45.0%
!! TGGTTTGCTGCAGTGTTGTT+TGG - chr8_1:63672285-63672304 Msa1206610:intron 45.0%
GCATTACTCTTGGGACTTTC+TGG - chr8_1:63672368-63672387 Msa1206610:intron 45.0%
CGGGGAGATACTTCAGTAAT+TGG + chr8_1:63672835-63672854 None:intergenic 45.0%
! ATTACTGAAGTATCTCCCCG+TGG - chr8_1:63672835-63672854 Msa1206610:CDS 45.0%
TGCTGCACATACAACAATGC+CGG + chr8_1:63673028-63673047 None:intergenic 45.0%
CAGAAAGGTGGAAACAAAGC+TGG - chr8_1:63673611-63673630 Msa1206610:intron 45.0%
CGCAACATTACTTGATGCCA+CGG + chr8_1:63673663-63673682 None:intergenic 45.0%
CAACAATGAGGAGTCCCAAA+AGG - chr8_1:63673924-63673943 Msa1206610:intron 45.0%
GTGATAGTAAAACCTGGCAC+TGG - chr8_1:63673947-63673966 Msa1206610:intron 45.0%
! ATAGTAAAACCTGGCACTGG+TGG - chr8_1:63673950-63673969 Msa1206610:intron 45.0%
TTTGCATTTCCTCGCAATGG+TGG - chr8_1:63674016-63674035 Msa1206610:intron 45.0%
CGAGTATACTGAGCTACTAC+TGG + chr8_1:63674179-63674198 None:intergenic 45.0%
GCCATCGTATCTCTTGTACA+AGG + chr8_1:63674321-63674340 None:intergenic 45.0%
! ATGGTGTTTCTGTGGAAGGA+GGG + chr8_1:63674543-63674562 None:intergenic 45.0%
! AATGGTGTTTCTGTGGAAGG+AGG + chr8_1:63674544-63674563 None:intergenic 45.0%
! AAGGAGAAGGGAAGGTGCAA+TGG + chr8_1:63668665-63668684 None:intergenic 50.0%
CAAGGACCTTGCTTTCACTG+TGG - chr8_1:63669065-63669084 Msa1206610:three_prime_UTR 50.0%
! CATAGCAACGCCCTTTTGCA+AGG + chr8_1:63670036-63670055 None:intergenic 50.0%
GCAATGCATGTGGATCTCGA+TGG - chr8_1:63670365-63670384 Msa1206610:intron 50.0%
ATGCATGTGGATCTCGATGG+AGG - chr8_1:63670368-63670387 Msa1206610:intron 50.0%
TGGATCTCGATGGAGGACAA+AGG - chr8_1:63670375-63670394 Msa1206610:intron 50.0%
GGATCTCGATGGAGGACAAA+GGG - chr8_1:63670376-63670395 Msa1206610:intron 50.0%
TCCTTCTCGGTCAGTAGTCT+GGG - chr8_1:63671257-63671276 Msa1206610:intron 50.0%
! GTCAGTAGTCTGGGATACTG+CGG - chr8_1:63671266-63671285 Msa1206610:intron 50.0%
AGAAGAATGCTTCAGACGCC+CGG + chr8_1:63671316-63671335 None:intergenic 50.0%
CCGATGGTCTCTGTTGAGAT+AGG - chr8_1:63671438-63671457 Msa1206610:intron 50.0%
TCGTCACGAGCTATAGAGCT+AGG + chr8_1:63671489-63671508 None:intergenic 50.0%
CTCTTCTCAGGGAGTTGCAA+AGG - chr8_1:63671620-63671639 Msa1206610:intron 50.0%
GCAAAGGTCAGAAACTCTGC+TGG - chr8_1:63671636-63671655 Msa1206610:intron 50.0%
CTTCTACGAGTGCAGAAAGG+TGG - chr8_1:63673599-63673618 Msa1206610:intron 50.0%
TGATATGGAATCTCCTGCCG+TGG - chr8_1:63673643-63673662 Msa1206610:intron 50.0%
ACATTACTTGATGCCACGGC+AGG + chr8_1:63673659-63673678 None:intergenic 50.0%
GGTGGCAAAGAAGCTGTAGA+TGG - chr8_1:63673968-63673987 Msa1206610:intron 50.0%
! CGTTGATGAGAGTTCGGATC+AGG - chr8_1:63674066-63674085 Msa1206610:intron 50.0%
CCAAGCTAGAATTTGGGAGC+AGG + chr8_1:63674141-63674160 None:intergenic 50.0%
! CCTGCTCCCAAATTCTAGCT+TGG - chr8_1:63674138-63674157 Msa1206610:intron 50.0%
GATTGCCAAGGGATGCAAGT+TGG - chr8_1:63674376-63674395 Msa1206610:five_prime_UTR 50.0%
! CCAAGGGATGCAAGTTGGAT+GGG - chr8_1:63674381-63674400 Msa1206610:five_prime_UTR 50.0%
GGCACACCACTTTGGCGTAA+CGG - chr8_1:63670319-63670338 Msa1206610:intron 55.0%
GCACACCACTTTGGCGTAAC+GGG - chr8_1:63670320-63670339 Msa1206610:intron 55.0%
GTCCTTCTCGGTCAGTAGTC+TGG - chr8_1:63671256-63671275 Msa1206610:intron 55.0%
TCCCAGACTACTGACCGAGA+AGG + chr8_1:63671261-63671280 None:intergenic 55.0%
AGCTCGTGACGAAGAGTCTG+AGG - chr8_1:63671497-63671516 Msa1206610:intron 55.0%
GCTGCTCCTGTTGCAGTCTT+GGG + chr8_1:63671662-63671681 None:intergenic 55.0%
AGCTGCTCCTGTTGCAGTCT+TGG + chr8_1:63671663-63671682 None:intergenic 55.0%
TGCAACAGGAGCAGCTTGTG+TGG - chr8_1:63671667-63671686 Msa1206610:CDS 55.0%
ATGTGCAAGCCACCATTGCG+AGG + chr8_1:63674028-63674047 None:intergenic 55.0%
! CAATGGTGGCTTGCACATGC+TGG - chr8_1:63674030-63674049 Msa1206610:intron 55.0%
! GCCAAGGGATGCAAGTTGGA+TGG - chr8_1:63674380-63674399 Msa1206610:five_prime_UTR 55.0%
CCCATCCAACTTGCATCCCT+TGG + chr8_1:63674384-63674403 None:intergenic 55.0%
TGCTGGCCCAAGACTGCAAC+AGG - chr8_1:63671653-63671672 Msa1206610:intron 60.0%
GCTTCTTTGCCACCAGTGCC+AGG + chr8_1:63673962-63673981 None:intergenic 60.0%
GGTGGCCCGTTACGCCAAAG+TGG + chr8_1:63670328-63670347 None:intergenic 65.0%
GGGAGCAGGAGCTCTGCCTG+TGG + chr8_1:63674127-63674146 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63668556 63674788 63668556 ID=Msa1206610;Name=Msa1206610
chr8_1 mRNA 63668556 63674788 63668556 ID=Msa1206610-mRNA-1;Parent=Msa1206610;Name=Msa1206610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=459|1|1|1|0.87|0.77|9|572|542
chr8_1 exon 63668556 63669429 63668556 ID=Msa1206610-mRNA-1:exon:20743;Parent=Msa1206610-mRNA-1
chr8_1 exon 63669619 63669730 63669619 ID=Msa1206610-mRNA-1:exon:20742;Parent=Msa1206610-mRNA-1
chr8_1 exon 63670112 63670298 63670112 ID=Msa1206610-mRNA-1:exon:20741;Parent=Msa1206610-mRNA-1
chr8_1 exon 63670462 63670565 63670462 ID=Msa1206610-mRNA-1:exon:20740;Parent=Msa1206610-mRNA-1
chr8_1 exon 63671194 63671266 63671194 ID=Msa1206610-mRNA-1:exon:20739;Parent=Msa1206610-mRNA-1
chr8_1 exon 63671656 63672088 63671656 ID=Msa1206610-mRNA-1:exon:20738;Parent=Msa1206610-mRNA-1
chr8_1 exon 63672647 63673024 63672647 ID=Msa1206610-mRNA-1:exon:20737;Parent=Msa1206610-mRNA-1
chr8_1 exon 63674249 63674448 63674249 ID=Msa1206610-mRNA-1:exon:20736;Parent=Msa1206610-mRNA-1
chr8_1 exon 63674490 63674788 63674490 ID=Msa1206610-mRNA-1:exon:20735;Parent=Msa1206610-mRNA-1
chr8_1 five_prime_UTR 63674490 63674788 63674490 ID=Msa1206610-mRNA-1:five_prime_utr;Parent=Msa1206610-mRNA-1
chr8_1 five_prime_UTR 63674289 63674448 63674289 ID=Msa1206610-mRNA-1:five_prime_utr;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63674249 63674288 63674249 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63672647 63673024 63672647 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63671656 63672088 63671656 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63671194 63671266 63671194 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63670462 63670565 63670462 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63670112 63670298 63670112 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63669619 63669730 63669619 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 CDS 63669128 63669429 63669128 ID=Msa1206610-mRNA-1:cds;Parent=Msa1206610-mRNA-1
chr8_1 three_prime_UTR 63668556 63669127 63668556 ID=Msa1206610-mRNA-1:three_prime_utr;Parent=Msa1206610-mRNA-1
Gene Sequence

>Msa1206610

ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTCGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGAACATGTGCCGGGCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACAAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAGCTTGTGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTGAACTACAAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCACCAATTACTGAAGTATCTCCCCGTGGTTGATACTGCTAAATTTCCTGATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTTGGAGGAGACCCTGAAGACTGCAAGACATGTAAAAGGCTTGCATTATCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAACCTGGCACTGGTGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA
Protein sequence

>Msa1206610

MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYKSETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSQLEKLEVLGNHDSSLCSIDLNDVVNYKEFSRNLTNEEQHQLLKYLPVVDTAKFPDSIKIMFDSFQFKEELTYFQKLLEEGVFDISLFGGDPEDCKTCKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKPGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP*