Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207370 | XP_003602417.1 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 1.84e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207370 | sp|P30707|RL9_PEA | 96.296 | 135 | 5 | 0 | 1 | 135 | 59 | 193 | 3.56e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207370 | G7J9M6 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 8.78e-91 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1207370 | Msa1207410 | 0.888278 | 6.800995e-73 | -8.615850e-47 |
| Msa1207370 | Msa1257590 | 0.801219 | 9.985430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207370 | MtrunA17_Chr3g0128201 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 1.69e-94 | 270 |
| Msa1207370 | MtrunA17_Chr5g0428861 | 85.075 | 134 | 20 | 0 | 1 | 134 | 59 | 192 | 4.71e-85 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207370 | AT1G33140.1 | 86.667 | 135 | 18 | 0 | 1 | 135 | 60 | 194 | 5.34e-85 | 247 |
| Msa1207370 | AT1G33120.1 | 86.667 | 135 | 18 | 0 | 1 | 135 | 60 | 194 | 5.34e-85 | 247 |
| Msa1207370 | AT4G10450.1 | 84.444 | 135 | 21 | 0 | 1 | 135 | 60 | 194 | 3.18e-83 | 242 |
| Msa1207370 | AT4G10450.2 | 84.112 | 107 | 17 | 0 | 1 | 107 | 60 | 166 | 3.61e-64 | 193 |
Find 46 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGATCCGAAACTTTAT+TGG | 0.213194 | 8_1:+64788564 | Msa1207370:CDS |
| TCGATGCTTGGTTTGGTTCC+AGG | 0.300629 | 8_1:+64788400 | Msa1207370:CDS |
| GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 8_1:+64789018 | Msa1207370:CDS |
| CTCAAGATCGATGCTTGGTT+TGG | 0.321969 | 8_1:+64788393 | None:intergenic |
| ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 8_1:+64789047 | Msa1207370:CDS |
| TCTTCTCTCCAATAAAGTTT+CGG | 0.368690 | 8_1:-64788572 | None:intergenic |
| CTCAATCGACTTGTTGTCAT+TGG | 0.397158 | 8_1:-64788547 | None:intergenic |
| AATTCTCTCGAAGGGTGATC+AGG | 0.429200 | 8_1:-64789355 | None:intergenic |
| GGTATTTATGTTAGTGAGAA+GGG | 0.433044 | 8_1:+64789226 | Msa1207370:CDS |
| ATTGGTGATGCTAGCGTTGA+TGG | 0.438976 | 8_1:-64788529 | None:intergenic |
| GATATCAGGAAGTTTCTTGA+TGG | 0.450730 | 8_1:+64789205 | Msa1207370:CDS |
| AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 8_1:+64788971 | Msa1207370:CDS |
| AGCAGTTCTGATGGCGGCGG+AGG | 0.457127 | 8_1:-64788427 | None:intergenic |
| TTCTTCTCAAGATCGATGCT+TGG | 0.472069 | 8_1:+64788388 | None:intergenic |
| AAACTTTATTGGAGAGAAGA+AGG | 0.475592 | 8_1:+64788575 | Msa1207370:CDS |
| TTTCTGATTTCAATATCCTA+AGG | 0.480186 | 8_1:+64789377 | Msa1207370:three_prime_UTR |
| TTCTGATTTCAATATCCTAA+GGG | 0.516306 | 8_1:+64789378 | Msa1207370:three_prime_UTR |
| TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 8_1:+64788997 | Msa1207370:CDS |
| AATCACCACAATGATCCCTT+AGG | 0.526618 | 8_1:-64789393 | None:intergenic |
| TGGTATTTATGTTAGTGAGA+AGG | 0.531892 | 8_1:+64789225 | Msa1207370:CDS |
| TTGGTGATGCTAGCGTTGAT+GGG | 0.543746 | 8_1:-64788528 | None:intergenic |
| TTATGTTAGTGAGAAGGGAT+CGG | 0.552761 | 8_1:+64789231 | Msa1207370:CDS |
| CACGTTGAGAATCTCATCAC+TGG | 0.554104 | 8_1:+64788456 | Msa1207370:CDS |
| ATGTTGCCTACTGTGGAGAA+AGG | 0.556363 | 8_1:+64789332 | Msa1207370:three_prime_UTR |
| CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 8_1:-64788484 | None:intergenic |
| AATCAGAAAATTCTCTCGAA+GGG | 0.559197 | 8_1:-64789363 | None:intergenic |
| AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 8_1:+64788487 | Msa1207370:CDS |
| AAATCAGAAAATTCTCTCGA+AGG | 0.566339 | 8_1:-64789364 | None:intergenic |
| ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 8_1:+64789009 | Msa1207370:CDS |
| CTCATCACTGGTGTTACCAA+GGG | 0.573994 | 8_1:+64788468 | Msa1207370:CDS |
| GAGAGCAGTTCTGATGGCGG+CGG | 0.574544 | 8_1:-64788430 | None:intergenic |
| TAATAACATCTGGTGCCTTG+TGG | 0.575925 | 8_1:-64789279 | None:intergenic |
| GTGGCTGAGAGCAGTTCTGA+TGG | 0.581831 | 8_1:-64788436 | None:intergenic |
| TCTCATCACTGGTGTTACCA+AGG | 0.595050 | 8_1:+64788467 | Msa1207370:CDS |
| GTCATGTGCACTTATTAACC+AGG | 0.625933 | 8_1:+64789069 | Msa1207370:CDS |
| TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 8_1:+64789003 | Msa1207370:CDS |
| AGAATAGACGGTGATCCACA+AGG | 0.636640 | 8_1:+64789264 | Msa1207370:exon |
| TGTTAGTGAGAAGGGATCGG+TGG | 0.651106 | 8_1:+64789234 | Msa1207370:CDS |
| GGTGGTAACTGAAGAATAGA+CGG | 0.652710 | 8_1:+64789252 | Msa1207370:exon |
| GATGAGAATGTTGCCTACTG+TGG | 0.669353 | 8_1:+64789325 | Msa1207370:three_prime_UTR |
| TGGTGATGCTAGCGTTGATG+GGG | 0.676063 | 8_1:-64788527 | None:intergenic |
| GCTGAGAGCAGTTCTGATGG+CGG | 0.677632 | 8_1:-64788433 | None:intergenic |
| ATCAGGCCTTTCTCCACAGT+AGG | 0.680336 | 8_1:-64789338 | None:intergenic |
| ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 8_1:-64788494 | None:intergenic |
| AATATCCTAAGGGATCATTG+TGG | 0.715624 | 8_1:+64789388 | Msa1207370:three_prime_UTR |
| CAGTGATGAGATTCTCAACG+TGG | 0.725921 | 8_1:-64788455 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr8_1:64788629-64788648 | Msa1207370:intron | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr8_1:64788696-64788715 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr8_1:64788697-64788716 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | + | chr8_1:64788839-64788858 | Msa1207370:intron | 10.0% |
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr8_1:64788629-64788648 | Msa1207370:intron | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr8_1:64788696-64788715 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr8_1:64788697-64788716 | None:intergenic | 10.0% |
| !!! | ATGAGTTAATTTTTTTATTT+TGG | + | chr8_1:64788839-64788858 | Msa1207370:intron | 10.0% |
| !!! | AAATAAGTTAATCTTTTATC+TGG | + | chr8_1:64788807-64788826 | Msa1207370:intron | 15.0% |
| !!! | AAATAAGTTAATCTTTTATC+TGG | + | chr8_1:64788807-64788826 | Msa1207370:intron | 15.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr8_1:64788663-64788682 | None:intergenic | 20.0% |
| !! | ACAAAAAACATAATAACATC+TGG | - | chr8_1:64789292-64789311 | None:intergenic | 20.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr8_1:64788663-64788682 | None:intergenic | 20.0% |
| !! | ACAAAAAACATAATAACATC+TGG | - | chr8_1:64789292-64789311 | None:intergenic | 20.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr8_1:64788873-64788892 | Msa1207370:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr8_1:64788946-64788965 | Msa1207370:intron | 25.0% |
| ! | ACAAAAATAAACCATGTTCA+TGG | - | chr8_1:64789113-64789132 | None:intergenic | 25.0% |
| !! | TCTGAATATTGTTGTGTTTT+TGG | + | chr8_1:64789156-64789175 | Msa1207370:intron | 25.0% |
| !! | TGATATCCTTCTTTTTAACA+TGG | - | chr8_1:64789192-64789211 | None:intergenic | 25.0% |
| ! | ATGTTAAAAAGAAGGATATC+AGG | + | chr8_1:64789191-64789210 | Msa1207370:CDS | 25.0% |
| ! | TTTCTGATTTCAATATCCTA+AGG | + | chr8_1:64789377-64789396 | Msa1207370:three_prime_UTR | 25.0% |
| ! | TTCTGATTTCAATATCCTAA+GGG | + | chr8_1:64789378-64789397 | Msa1207370:three_prime_UTR | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr8_1:64788873-64788892 | Msa1207370:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr8_1:64788946-64788965 | Msa1207370:intron | 25.0% |
| ! | ACAAAAATAAACCATGTTCA+TGG | - | chr8_1:64789113-64789132 | None:intergenic | 25.0% |
| !! | TCTGAATATTGTTGTGTTTT+TGG | + | chr8_1:64789156-64789175 | Msa1207370:intron | 25.0% |
| !! | TGATATCCTTCTTTTTAACA+TGG | - | chr8_1:64789192-64789211 | None:intergenic | 25.0% |
| ! | ATGTTAAAAAGAAGGATATC+AGG | + | chr8_1:64789191-64789210 | Msa1207370:CDS | 25.0% |
| ! | TTTCTGATTTCAATATCCTA+AGG | + | chr8_1:64789377-64789396 | Msa1207370:three_prime_UTR | 25.0% |
| ! | TTCTGATTTCAATATCCTAA+GGG | + | chr8_1:64789378-64789397 | Msa1207370:three_prime_UTR | 25.0% |
| ATTGAGATCCGAAACTTTAT+TGG | + | chr8_1:64788564-64788583 | Msa1207370:CDS | 30.0% | |
| TCTTCTCTCCAATAAAGTTT+CGG | - | chr8_1:64788575-64788594 | None:intergenic | 30.0% | |
| AAACTTTATTGGAGAGAAGA+AGG | + | chr8_1:64788575-64788594 | Msa1207370:CDS | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | + | chr8_1:64788881-64788900 | Msa1207370:intron | 30.0% | |
| ! | TTTACTAGTTTGAGAATCTG+TGG | + | chr8_1:64788919-64788938 | Msa1207370:intron | 30.0% |
| GAATAATGTTGTATTAGGTG+AGG | + | chr8_1:64788951-64788970 | Msa1207370:intron | 30.0% | |
| GAAATGCCATGTTAAAAAGA+AGG | + | chr8_1:64789183-64789202 | Msa1207370:intron | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | + | chr8_1:64789225-64789244 | Msa1207370:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | + | chr8_1:64789226-64789245 | Msa1207370:CDS | 30.0% | |
| AATCAGAAAATTCTCTCGAA+GGG | - | chr8_1:64789366-64789385 | None:intergenic | 30.0% | |
| AAATCAGAAAATTCTCTCGA+AGG | - | chr8_1:64789367-64789386 | None:intergenic | 30.0% | |
| ATTGAGATCCGAAACTTTAT+TGG | + | chr8_1:64788564-64788583 | Msa1207370:CDS | 30.0% | |
| TCTTCTCTCCAATAAAGTTT+CGG | - | chr8_1:64788575-64788594 | None:intergenic | 30.0% | |
| AAACTTTATTGGAGAGAAGA+AGG | + | chr8_1:64788575-64788594 | Msa1207370:CDS | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | + | chr8_1:64788881-64788900 | Msa1207370:intron | 30.0% | |
| ! | TTTACTAGTTTGAGAATCTG+TGG | + | chr8_1:64788919-64788938 | Msa1207370:intron | 30.0% |
| GAATAATGTTGTATTAGGTG+AGG | + | chr8_1:64788951-64788970 | Msa1207370:intron | 30.0% | |
| GAAATGCCATGTTAAAAAGA+AGG | + | chr8_1:64789183-64789202 | Msa1207370:intron | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | + | chr8_1:64789225-64789244 | Msa1207370:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | + | chr8_1:64789226-64789245 | Msa1207370:CDS | 30.0% | |
| AATCAGAAAATTCTCTCGAA+GGG | - | chr8_1:64789366-64789385 | None:intergenic | 30.0% | |
| AAATCAGAAAATTCTCTCGA+AGG | - | chr8_1:64789367-64789386 | None:intergenic | 30.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr8_1:64788971-64788990 | Msa1207370:CDS | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr8_1:64788997-64789016 | Msa1207370:CDS | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr8_1:64789047-64789066 | Msa1207370:CDS | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | - | chr8_1:64789100-64789119 | None:intergenic | 35.0% | |
| GATATCAGGAAGTTTCTTGA+TGG | + | chr8_1:64789205-64789224 | Msa1207370:CDS | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | + | chr8_1:64789231-64789250 | Msa1207370:CDS | 35.0% | |
| AATATCCTAAGGGATCATTG+TGG | + | chr8_1:64789388-64789407 | Msa1207370:three_prime_UTR | 35.0% | |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr8_1:64788971-64788990 | Msa1207370:CDS | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr8_1:64788997-64789016 | Msa1207370:CDS | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr8_1:64789047-64789066 | Msa1207370:CDS | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | - | chr8_1:64789100-64789119 | None:intergenic | 35.0% | |
| GATATCAGGAAGTTTCTTGA+TGG | + | chr8_1:64789205-64789224 | Msa1207370:CDS | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | + | chr8_1:64789231-64789250 | Msa1207370:CDS | 35.0% | |
| AATATCCTAAGGGATCATTG+TGG | + | chr8_1:64789388-64789407 | Msa1207370:three_prime_UTR | 35.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr8_1:64788497-64788516 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr8_1:64788550-64788569 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr8_1:64789022-64789041 | Msa1207370:CDS | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | + | chr8_1:64789069-64789088 | Msa1207370:CDS | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr8_1:64789099-64789118 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr8_1:64789101-64789120 | None:intergenic | 40.0% | |
| CTTAACATGGTCCATGAACA+TGG | + | chr8_1:64789099-64789118 | Msa1207370:intron | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | + | chr8_1:64789252-64789271 | Msa1207370:exon | 40.0% | |
| TAATAACATCTGGTGCCTTG+TGG | - | chr8_1:64789282-64789301 | None:intergenic | 40.0% | |
| AATCACCACAATGATCCCTT+AGG | - | chr8_1:64789396-64789415 | None:intergenic | 40.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr8_1:64788497-64788516 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr8_1:64788550-64788569 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr8_1:64789022-64789041 | Msa1207370:CDS | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | + | chr8_1:64789069-64789088 | Msa1207370:CDS | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr8_1:64789099-64789118 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr8_1:64789101-64789120 | None:intergenic | 40.0% | |
| CTTAACATGGTCCATGAACA+TGG | + | chr8_1:64789099-64789118 | Msa1207370:intron | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | + | chr8_1:64789252-64789271 | Msa1207370:exon | 40.0% | |
| TAATAACATCTGGTGCCTTG+TGG | - | chr8_1:64789282-64789301 | None:intergenic | 40.0% | |
| AATCACCACAATGATCCCTT+AGG | - | chr8_1:64789396-64789415 | None:intergenic | 40.0% | |
| CAGTGATGAGATTCTCAACG+TGG | - | chr8_1:64788458-64788477 | None:intergenic | 45.0% | |
| CACGTTGAGAATCTCATCAC+TGG | + | chr8_1:64788456-64788475 | Msa1207370:CDS | 45.0% | |
| !! | TCTCATCACTGGTGTTACCA+AGG | + | chr8_1:64788467-64788486 | Msa1207370:CDS | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | + | chr8_1:64788468-64788487 | Msa1207370:CDS | 45.0% |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr8_1:64788531-64788550 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr8_1:64788532-64788551 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr8_1:64789003-64789022 | Msa1207370:CDS | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr8_1:64789009-64789028 | Msa1207370:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr8_1:64789018-64789037 | Msa1207370:CDS | 45.0% |
| AGAATAGACGGTGATCCACA+AGG | + | chr8_1:64789264-64789283 | Msa1207370:exon | 45.0% | |
| GATGAGAATGTTGCCTACTG+TGG | + | chr8_1:64789325-64789344 | Msa1207370:three_prime_UTR | 45.0% | |
| ATGTTGCCTACTGTGGAGAA+AGG | + | chr8_1:64789332-64789351 | Msa1207370:three_prime_UTR | 45.0% | |
| AATTCTCTCGAAGGGTGATC+AGG | - | chr8_1:64789358-64789377 | None:intergenic | 45.0% | |
| CAGTGATGAGATTCTCAACG+TGG | - | chr8_1:64788458-64788477 | None:intergenic | 45.0% | |
| CACGTTGAGAATCTCATCAC+TGG | + | chr8_1:64788456-64788475 | Msa1207370:CDS | 45.0% | |
| !! | TCTCATCACTGGTGTTACCA+AGG | + | chr8_1:64788467-64788486 | Msa1207370:CDS | 45.0% |
| !! | CTCATCACTGGTGTTACCAA+GGG | + | chr8_1:64788468-64788487 | Msa1207370:CDS | 45.0% |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr8_1:64788531-64788550 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr8_1:64788532-64788551 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr8_1:64789003-64789022 | Msa1207370:CDS | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr8_1:64789009-64789028 | Msa1207370:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr8_1:64789018-64789037 | Msa1207370:CDS | 45.0% |
| AGAATAGACGGTGATCCACA+AGG | + | chr8_1:64789264-64789283 | Msa1207370:exon | 45.0% | |
| GATGAGAATGTTGCCTACTG+TGG | + | chr8_1:64789325-64789344 | Msa1207370:three_prime_UTR | 45.0% | |
| ATGTTGCCTACTGTGGAGAA+AGG | + | chr8_1:64789332-64789351 | Msa1207370:three_prime_UTR | 45.0% | |
| AATTCTCTCGAAGGGTGATC+AGG | - | chr8_1:64789358-64789377 | None:intergenic | 45.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr8_1:64788400-64788419 | Msa1207370:CDS | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr8_1:64788487-64788506 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr8_1:64788487-64788506 | Msa1207370:CDS | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | - | chr8_1:64788530-64788549 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | + | chr8_1:64789086-64789105 | Msa1207370:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr8_1:64789090-64789109 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | + | chr8_1:64789234-64789253 | Msa1207370:CDS | 50.0% | |
| ATCAGGCCTTTCTCCACAGT+AGG | - | chr8_1:64789341-64789360 | None:intergenic | 50.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr8_1:64788400-64788419 | Msa1207370:CDS | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr8_1:64788487-64788506 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr8_1:64788487-64788506 | Msa1207370:CDS | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | - | chr8_1:64788530-64788549 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | + | chr8_1:64789086-64789105 | Msa1207370:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr8_1:64789090-64789109 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | + | chr8_1:64789234-64789253 | Msa1207370:CDS | 50.0% | |
| ATCAGGCCTTTCTCCACAGT+AGG | - | chr8_1:64789341-64789360 | None:intergenic | 50.0% | |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | - | chr8_1:64788436-64788455 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | - | chr8_1:64788439-64788458 | None:intergenic | 55.0% |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | - | chr8_1:64788436-64788455 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | - | chr8_1:64788439-64788458 | None:intergenic | 55.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | - | chr8_1:64788433-64788452 | None:intergenic | 60.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | - | chr8_1:64788433-64788452 | None:intergenic | 60.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | - | chr8_1:64788421-64788440 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | - | chr8_1:64788430-64788449 | None:intergenic | 65.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | - | chr8_1:64788421-64788440 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | - | chr8_1:64788430-64788449 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 64788399 | 64789415 | 64788399 | ID=Msa1207370;Name=Msa1207370 |
| chr8_1 | mRNA | 64788399 | 64789415 | 64788399 | ID=Msa1207370-mRNA-1;Parent=Msa1207370;Name=Msa1207370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.66|1|1|1|3|145|135 |
| chr8_1 | exon | 64788399 | 64788596 | 64788399 | ID=Msa1207370-mRNA-1:exon:21261;Parent=Msa1207370-mRNA-1 |
| chr8_1 | exon | 64788968 | 64789090 | 64788968 | ID=Msa1207370-mRNA-1:exon:21262;Parent=Msa1207370-mRNA-1 |
| chr8_1 | exon | 64789184 | 64789415 | 64789184 | ID=Msa1207370-mRNA-1:exon:21263;Parent=Msa1207370-mRNA-1 |
| chr8_1 | CDS | 64788399 | 64788596 | 64788399 | ID=Msa1207370-mRNA-1:cds;Parent=Msa1207370-mRNA-1 |
| chr8_1 | CDS | 64788968 | 64789090 | 64788968 | ID=Msa1207370-mRNA-1:cds;Parent=Msa1207370-mRNA-1 |
| chr8_1 | CDS | 64789184 | 64789270 | 64789184 | ID=Msa1207370-mRNA-1:cds;Parent=Msa1207370-mRNA-1 |
| chr8_1 | three_prime_UTR | 64789271 | 64789415 | 64789271 | ID=Msa1207370-mRNA-1:three_prime_utr;Parent=Msa1207370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
