Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207410 | XP_003602417.1 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 1.84e-90 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207410 | sp|P30707|RL9_PEA | 96.296 | 135 | 5 | 0 | 1 | 135 | 59 | 193 | 3.56e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207410 | G7J9M6 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 8.78e-91 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116850 | Msa1207410 | 0.844052 | 9.597047e-59 | -8.615850e-47 |
| Msa0730430 | Msa1207410 | 0.801548 | 8.547462e-49 | -8.615850e-47 |
| Msa0750880 | Msa1207410 | 0.803685 | 3.098266e-49 | -8.615850e-47 |
| Msa1207370 | Msa1207410 | 0.888278 | 6.800995e-73 | -8.615850e-47 |
| Msa1207410 | Msa1209460 | 0.809165 | 2.165535e-50 | -8.615850e-47 |
| Msa1207410 | Msa1257590 | 0.843135 | 1.687892e-58 | -8.615850e-47 |
| Msa1207410 | Msa1353060 | 0.802154 | 6.419390e-49 | -8.615850e-47 |
| Msa1207410 | Msa1374120 | 0.817871 | 2.634113e-52 | -8.615850e-47 |
| Msa1207410 | Msa1382620 | 0.801634 | 8.209582e-49 | -8.615850e-47 |
| Msa1207410 | Msa1442820 | 0.803874 | 2.830611e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207410 | MtrunA17_Chr3g0128201 | 98.519 | 135 | 2 | 0 | 1 | 135 | 59 | 193 | 1.69e-94 | 270 |
| Msa1207410 | MtrunA17_Chr5g0428861 | 85.075 | 134 | 20 | 0 | 1 | 134 | 59 | 192 | 4.71e-85 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207410 | AT1G33140.1 | 86.667 | 135 | 18 | 0 | 1 | 135 | 60 | 194 | 5.34e-85 | 247 |
| Msa1207410 | AT1G33120.1 | 86.667 | 135 | 18 | 0 | 1 | 135 | 60 | 194 | 5.34e-85 | 247 |
| Msa1207410 | AT4G10450.1 | 84.444 | 135 | 21 | 0 | 1 | 135 | 60 | 194 | 3.18e-83 | 242 |
| Msa1207410 | AT4G10450.2 | 84.112 | 107 | 17 | 0 | 1 | 107 | 60 | 166 | 3.61e-64 | 193 |
Find 43 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGATCCGAAACTTTAT+TGG | 0.213194 | 8_1:+64858330 | Msa1207410:CDS |
| TCGATGCTTGGTTTGGTTCC+AGG | 0.300629 | 8_1:+64858166 | Msa1207410:CDS |
| GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 8_1:+64858784 | Msa1207410:CDS |
| CTCAAGATCGATGCTTGGTT+TGG | 0.321969 | 8_1:+64858159 | None:intergenic |
| ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 8_1:+64858813 | Msa1207410:CDS |
| TCTTCTCTCCAATAAAGTTT+CGG | 0.368690 | 8_1:-64858338 | None:intergenic |
| CTCAATCGACTTGTTGTCAT+TGG | 0.397158 | 8_1:-64858313 | None:intergenic |
| AATTCTCTCGAAGGGTGATC+AGG | 0.429200 | 8_1:-64859124 | None:intergenic |
| GGTATTTATGTTAGTGAGAA+GGG | 0.433044 | 8_1:+64858995 | Msa1207410:CDS |
| ATTGGTGATGCTAGCGTTGA+TGG | 0.438976 | 8_1:-64858295 | None:intergenic |
| GATGAGAATGTTGCCTACTA+TGG | 0.440637 | 8_1:+64859094 | Msa1207410:three_prime_UTR |
| GATATCAGGAAGTTTCTTGA+TGG | 0.450730 | 8_1:+64858974 | Msa1207410:CDS |
| AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 8_1:+64858737 | Msa1207410:CDS |
| AGCAGTTCTGATGGCGGCGG+AGG | 0.457127 | 8_1:-64858193 | None:intergenic |
| TTCTTCTCAAGATCGATGCT+TGG | 0.472069 | 8_1:+64858154 | None:intergenic |
| AAACTTTATTGGAGAGAAGA+AGG | 0.475592 | 8_1:+64858341 | Msa1207410:CDS |
| TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 8_1:+64858763 | Msa1207410:CDS |
| AATCACCACAATGATCCCTT+AGG | 0.526618 | 8_1:-64859162 | None:intergenic |
| TGGTATTTATGTTAGTGAGA+AGG | 0.531892 | 8_1:+64858994 | Msa1207410:CDS |
| TTGGTGATGCTAGCGTTGAT+GGG | 0.543746 | 8_1:-64858294 | None:intergenic |
| TTATGTTAGTGAGAAGGGAT+CGG | 0.552761 | 8_1:+64859000 | Msa1207410:CDS |
| ATGTTGCCTACTATGGAGAA+AGG | 0.554067 | 8_1:+64859101 | Msa1207410:three_prime_UTR |
| CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 8_1:-64858250 | None:intergenic |
| AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 8_1:+64858253 | Msa1207410:CDS |
| ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 8_1:+64858775 | Msa1207410:CDS |
| CTCATCACCGGTGTTACCAA+GGG | 0.570574 | 8_1:+64858234 | Msa1207410:CDS |
| ATCAGGCCTTTCTCCATAGT+AGG | 0.572838 | 8_1:-64859107 | None:intergenic |
| GAGAGCAGTTCTGATGGCGG+CGG | 0.574544 | 8_1:-64858196 | None:intergenic |
| TAATAACATCTGGTGCCTTG+TGG | 0.575925 | 8_1:-64859048 | None:intergenic |
| GTGGCTGAGAGCAGTTCTGA+TGG | 0.581831 | 8_1:-64858202 | None:intergenic |
| TCTCATCACCGGTGTTACCA+AGG | 0.582174 | 8_1:+64858233 | Msa1207410:CDS |
| CACGTTGAGAATCTCATCAC+CGG | 0.585177 | 8_1:+64858222 | Msa1207410:CDS |
| GTCATGTGCACTTATTAACC+AGG | 0.625933 | 8_1:+64858835 | Msa1207410:CDS |
| TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 8_1:+64858769 | Msa1207410:CDS |
| AGAATAGACGGTGATCCACA+AGG | 0.636640 | 8_1:+64859033 | Msa1207410:exon |
| GCGGAAACCCTTGGTAACAC+CGG | 0.651012 | 8_1:-64858241 | None:intergenic |
| TGTTAGTGAGAAGGGATCGG+TGG | 0.651106 | 8_1:+64859003 | Msa1207410:CDS |
| GGTGGTAACTGAAGAATAGA+CGG | 0.652710 | 8_1:+64859021 | Msa1207410:exon |
| TGGTGATGCTAGCGTTGATG+GGG | 0.676063 | 8_1:-64858293 | None:intergenic |
| GCTGAGAGCAGTTCTGATGG+CGG | 0.677632 | 8_1:-64858199 | None:intergenic |
| ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 8_1:-64858260 | None:intergenic |
| CGGTGATGAGATTCTCAACG+TGG | 0.715055 | 8_1:-64858221 | None:intergenic |
| AATATCCTAAGGGATCATTG+TGG | 0.715624 | 8_1:+64859157 | Msa1207410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr8_1:64858395-64858414 | Msa1207410:intron | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr8_1:64858462-64858481 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr8_1:64858463-64858482 | None:intergenic | 10.0% |
| !!! | ATGAGTTATTTTTTTTATTT+TGG | + | chr8_1:64858605-64858624 | Msa1207410:intron | 10.0% |
| !!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr8_1:64858395-64858414 | Msa1207410:intron | 10.0% |
| !! | TATAAATTAGATTAAAACTA+GGG | - | chr8_1:64858462-64858481 | None:intergenic | 10.0% |
| !! | TTATAAATTAGATTAAAACT+AGG | - | chr8_1:64858463-64858482 | None:intergenic | 10.0% |
| !!! | ATGAGTTATTTTTTTTATTT+TGG | + | chr8_1:64858605-64858624 | Msa1207410:intron | 10.0% |
| !!! | AAATAAGTTAATCTTTTATC+TGG | + | chr8_1:64858573-64858592 | Msa1207410:intron | 15.0% |
| !!! | AAATAAGTTAATCTTTTATC+TGG | + | chr8_1:64858573-64858592 | Msa1207410:intron | 15.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr8_1:64858429-64858448 | None:intergenic | 20.0% |
| !! | ACAAAAAACATAATAACATC+TGG | - | chr8_1:64859061-64859080 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTCAATATCCTA+AGG | + | chr8_1:64859146-64859165 | Msa1207410:three_prime_UTR | 20.0% |
| !!! | TTTTGATTTCAATATCCTAA+GGG | + | chr8_1:64859147-64859166 | Msa1207410:three_prime_UTR | 20.0% |
| !! | TAAAATTGCATAAAACAACA+AGG | - | chr8_1:64858429-64858448 | None:intergenic | 20.0% |
| !! | ACAAAAAACATAATAACATC+TGG | - | chr8_1:64859061-64859080 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTCAATATCCTA+AGG | + | chr8_1:64859146-64859165 | Msa1207410:three_prime_UTR | 20.0% |
| !!! | TTTTGATTTCAATATCCTAA+GGG | + | chr8_1:64859147-64859166 | Msa1207410:three_prime_UTR | 20.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr8_1:64858639-64858658 | Msa1207410:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr8_1:64858712-64858731 | Msa1207410:intron | 25.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | - | chr8_1:64858879-64858898 | None:intergenic | 25.0% |
| !! | TGATATCCTTCTTTTTAACA+TGG | - | chr8_1:64858961-64858980 | None:intergenic | 25.0% |
| ! | ATGTTAAAAAGAAGGATATC+AGG | + | chr8_1:64858960-64858979 | Msa1207410:CDS | 25.0% |
| ! | AATCAAAAAATTCTCTCGAA+GGG | - | chr8_1:64859135-64859154 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATTCTCTCGA+AGG | - | chr8_1:64859136-64859155 | None:intergenic | 25.0% |
| ! | GAGATAATGTCTGATTTATT+TGG | + | chr8_1:64858639-64858658 | Msa1207410:intron | 25.0% |
| ! | GAATCGAATAATGTTGTATT+AGG | + | chr8_1:64858712-64858731 | Msa1207410:intron | 25.0% |
| ! | ACAAAAATAAAGCATGTTCA+TGG | - | chr8_1:64858879-64858898 | None:intergenic | 25.0% |
| !! | TGATATCCTTCTTTTTAACA+TGG | - | chr8_1:64858961-64858980 | None:intergenic | 25.0% |
| ! | ATGTTAAAAAGAAGGATATC+AGG | + | chr8_1:64858960-64858979 | Msa1207410:CDS | 25.0% |
| ! | AATCAAAAAATTCTCTCGAA+GGG | - | chr8_1:64859135-64859154 | None:intergenic | 25.0% |
| ! | AAATCAAAAAATTCTCTCGA+AGG | - | chr8_1:64859136-64859155 | None:intergenic | 25.0% |
| ATTGAGATCCGAAACTTTAT+TGG | + | chr8_1:64858330-64858349 | Msa1207410:CDS | 30.0% | |
| TCTTCTCTCCAATAAAGTTT+CGG | - | chr8_1:64858341-64858360 | None:intergenic | 30.0% | |
| AAACTTTATTGGAGAGAAGA+AGG | + | chr8_1:64858341-64858360 | Msa1207410:CDS | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | + | chr8_1:64858647-64858666 | Msa1207410:intron | 30.0% | |
| ATTATTCGATTCAATACCAC+AGG | - | chr8_1:64858704-64858723 | None:intergenic | 30.0% | |
| GAATAATGTTGTATTAGGTG+AGG | + | chr8_1:64858717-64858736 | Msa1207410:intron | 30.0% | |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | + | chr8_1:64858925-64858944 | Msa1207410:intron | 30.0% |
| GAAATGCCATGTTAAAAAGA+AGG | + | chr8_1:64858952-64858971 | Msa1207410:intron | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | + | chr8_1:64858994-64859013 | Msa1207410:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | + | chr8_1:64858995-64859014 | Msa1207410:CDS | 30.0% | |
| ATTGAGATCCGAAACTTTAT+TGG | + | chr8_1:64858330-64858349 | Msa1207410:CDS | 30.0% | |
| TCTTCTCTCCAATAAAGTTT+CGG | - | chr8_1:64858341-64858360 | None:intergenic | 30.0% | |
| AAACTTTATTGGAGAGAAGA+AGG | + | chr8_1:64858341-64858360 | Msa1207410:CDS | 30.0% | |
| GTCTGATTTATTTGGTTATC+TGG | + | chr8_1:64858647-64858666 | Msa1207410:intron | 30.0% | |
| ATTATTCGATTCAATACCAC+AGG | - | chr8_1:64858704-64858723 | None:intergenic | 30.0% | |
| GAATAATGTTGTATTAGGTG+AGG | + | chr8_1:64858717-64858736 | Msa1207410:intron | 30.0% | |
| !! | GAATGTTGTTGTTGTGTTTT+TGG | + | chr8_1:64858925-64858944 | Msa1207410:intron | 30.0% |
| GAAATGCCATGTTAAAAAGA+AGG | + | chr8_1:64858952-64858971 | Msa1207410:intron | 30.0% | |
| TGGTATTTATGTTAGTGAGA+AGG | + | chr8_1:64858994-64859013 | Msa1207410:CDS | 30.0% | |
| GGTATTTATGTTAGTGAGAA+GGG | + | chr8_1:64858995-64859014 | Msa1207410:CDS | 30.0% | |
| ! | TTTACTAGTTTGAGAACCTG+TGG | + | chr8_1:64858685-64858704 | Msa1207410:intron | 35.0% |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr8_1:64858737-64858756 | Msa1207410:CDS | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr8_1:64858763-64858782 | Msa1207410:CDS | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr8_1:64858813-64858832 | Msa1207410:CDS | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | - | chr8_1:64858866-64858885 | None:intergenic | 35.0% | |
| GATATCAGGAAGTTTCTTGA+TGG | + | chr8_1:64858974-64858993 | Msa1207410:CDS | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | + | chr8_1:64859000-64859019 | Msa1207410:CDS | 35.0% | |
| AATATCCTAAGGGATCATTG+TGG | + | chr8_1:64859157-64859176 | Msa1207410:three_prime_UTR | 35.0% | |
| ! | TTTACTAGTTTGAGAACCTG+TGG | + | chr8_1:64858685-64858704 | Msa1207410:intron | 35.0% |
| ! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr8_1:64858737-64858756 | Msa1207410:CDS | 35.0% |
| TTCAATTGTTCGATCTGAGA+AGG | + | chr8_1:64858763-64858782 | Msa1207410:CDS | 35.0% | |
| ! | ATGACATTGAGCTTGTTTCT+AGG | + | chr8_1:64858813-64858832 | Msa1207410:CDS | 35.0% |
| ATGTTCATGGACCATGTTAA+GGG | - | chr8_1:64858866-64858885 | None:intergenic | 35.0% | |
| GATATCAGGAAGTTTCTTGA+TGG | + | chr8_1:64858974-64858993 | Msa1207410:CDS | 35.0% | |
| TTATGTTAGTGAGAAGGGAT+CGG | + | chr8_1:64859000-64859019 | Msa1207410:CDS | 35.0% | |
| AATATCCTAAGGGATCATTG+TGG | + | chr8_1:64859157-64859176 | Msa1207410:three_prime_UTR | 35.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr8_1:64858263-64858282 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr8_1:64858316-64858335 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr8_1:64858788-64858807 | Msa1207410:CDS | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | + | chr8_1:64858835-64858854 | Msa1207410:CDS | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr8_1:64858865-64858884 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr8_1:64858867-64858886 | None:intergenic | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | + | chr8_1:64859021-64859040 | Msa1207410:exon | 40.0% | |
| TAATAACATCTGGTGCCTTG+TGG | - | chr8_1:64859051-64859070 | None:intergenic | 40.0% | |
| GATGAGAATGTTGCCTACTA+TGG | + | chr8_1:64859094-64859113 | Msa1207410:three_prime_UTR | 40.0% | |
| ATGTTGCCTACTATGGAGAA+AGG | + | chr8_1:64859101-64859120 | Msa1207410:three_prime_UTR | 40.0% | |
| AATCACCACAATGATCCCTT+AGG | - | chr8_1:64859165-64859184 | None:intergenic | 40.0% | |
| ACACAAACCTCATCTTGTAG+CGG | - | chr8_1:64858263-64858282 | None:intergenic | 40.0% | |
| !! | CTCAATCGACTTGTTGTCAT+TGG | - | chr8_1:64858316-64858335 | None:intergenic | 40.0% |
| !!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr8_1:64858788-64858807 | Msa1207410:CDS | 40.0% |
| GTCATGTGCACTTATTAACC+AGG | + | chr8_1:64858835-64858854 | Msa1207410:CDS | 40.0% | |
| TGTTCATGGACCATGTTAAG+GGG | - | chr8_1:64858865-64858884 | None:intergenic | 40.0% | |
| CATGTTCATGGACCATGTTA+AGG | - | chr8_1:64858867-64858886 | None:intergenic | 40.0% | |
| GGTGGTAACTGAAGAATAGA+CGG | + | chr8_1:64859021-64859040 | Msa1207410:exon | 40.0% | |
| TAATAACATCTGGTGCCTTG+TGG | - | chr8_1:64859051-64859070 | None:intergenic | 40.0% | |
| GATGAGAATGTTGCCTACTA+TGG | + | chr8_1:64859094-64859113 | Msa1207410:three_prime_UTR | 40.0% | |
| ATGTTGCCTACTATGGAGAA+AGG | + | chr8_1:64859101-64859120 | Msa1207410:three_prime_UTR | 40.0% | |
| AATCACCACAATGATCCCTT+AGG | - | chr8_1:64859165-64859184 | None:intergenic | 40.0% | |
| CACGTTGAGAATCTCATCAC+CGG | + | chr8_1:64858222-64858241 | Msa1207410:CDS | 45.0% | |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr8_1:64858297-64858316 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr8_1:64858298-64858317 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr8_1:64858769-64858788 | Msa1207410:CDS | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr8_1:64858775-64858794 | Msa1207410:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr8_1:64858784-64858803 | Msa1207410:CDS | 45.0% |
| AGAATAGACGGTGATCCACA+AGG | + | chr8_1:64859033-64859052 | Msa1207410:exon | 45.0% | |
| ATCAGGCCTTTCTCCATAGT+AGG | - | chr8_1:64859110-64859129 | None:intergenic | 45.0% | |
| AATTCTCTCGAAGGGTGATC+AGG | - | chr8_1:64859127-64859146 | None:intergenic | 45.0% | |
| CACGTTGAGAATCTCATCAC+CGG | + | chr8_1:64858222-64858241 | Msa1207410:CDS | 45.0% | |
| !! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr8_1:64858297-64858316 | None:intergenic | 45.0% |
| !! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr8_1:64858298-64858317 | None:intergenic | 45.0% |
| TGTTCGATCTGAGAAGGTGA+AGG | + | chr8_1:64858769-64858788 | Msa1207410:CDS | 45.0% | |
| ATCTGAGAAGGTGAAGGATG+AGG | + | chr8_1:64858775-64858794 | Msa1207410:CDS | 45.0% | |
| ! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr8_1:64858784-64858803 | Msa1207410:CDS | 45.0% |
| AGAATAGACGGTGATCCACA+AGG | + | chr8_1:64859033-64859052 | Msa1207410:exon | 45.0% | |
| ATCAGGCCTTTCTCCATAGT+AGG | - | chr8_1:64859110-64859129 | None:intergenic | 45.0% | |
| AATTCTCTCGAAGGGTGATC+AGG | - | chr8_1:64859127-64859146 | None:intergenic | 45.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr8_1:64858166-64858185 | Msa1207410:CDS | 50.0% |
| CGGTGATGAGATTCTCAACG+TGG | - | chr8_1:64858224-64858243 | None:intergenic | 50.0% | |
| !! | TCTCATCACCGGTGTTACCA+AGG | + | chr8_1:64858233-64858252 | Msa1207410:CDS | 50.0% |
| !! | CTCATCACCGGTGTTACCAA+GGG | + | chr8_1:64858234-64858253 | Msa1207410:CDS | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr8_1:64858253-64858272 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr8_1:64858253-64858272 | Msa1207410:CDS | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | - | chr8_1:64858296-64858315 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | + | chr8_1:64858852-64858871 | Msa1207410:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr8_1:64858856-64858875 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | + | chr8_1:64859003-64859022 | Msa1207410:CDS | 50.0% | |
| !! | TCGATGCTTGGTTTGGTTCC+AGG | + | chr8_1:64858166-64858185 | Msa1207410:CDS | 50.0% |
| CGGTGATGAGATTCTCAACG+TGG | - | chr8_1:64858224-64858243 | None:intergenic | 50.0% | |
| !! | TCTCATCACCGGTGTTACCA+AGG | + | chr8_1:64858233-64858252 | Msa1207410:CDS | 50.0% |
| !! | CTCATCACCGGTGTTACCAA+GGG | + | chr8_1:64858234-64858253 | Msa1207410:CDS | 50.0% |
| ! | CATCTTGTAGCGGAAACCCT+TGG | - | chr8_1:64858253-64858272 | None:intergenic | 50.0% |
| AGGGTTTCCGCTACAAGATG+AGG | + | chr8_1:64858253-64858272 | Msa1207410:CDS | 50.0% | |
| !! | TGGTGATGCTAGCGTTGATG+GGG | - | chr8_1:64858296-64858315 | None:intergenic | 50.0% |
| ACCAGGTACACCCCTTAACA+TGG | + | chr8_1:64858852-64858871 | Msa1207410:intron | 50.0% | |
| ! | ACCATGTTAAGGGGTGTACC+TGG | - | chr8_1:64858856-64858875 | None:intergenic | 50.0% |
| TGTTAGTGAGAAGGGATCGG+TGG | + | chr8_1:64859003-64859022 | Msa1207410:CDS | 50.0% | |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | - | chr8_1:64858202-64858221 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | - | chr8_1:64858205-64858224 | None:intergenic | 55.0% |
| ! | GCGGAAACCCTTGGTAACAC+CGG | - | chr8_1:64858244-64858263 | None:intergenic | 55.0% |
| ! | GCTGAGAGCAGTTCTGATGG+CGG | - | chr8_1:64858202-64858221 | None:intergenic | 55.0% |
| ! | GTGGCTGAGAGCAGTTCTGA+TGG | - | chr8_1:64858205-64858224 | None:intergenic | 55.0% |
| ! | GCGGAAACCCTTGGTAACAC+CGG | - | chr8_1:64858244-64858263 | None:intergenic | 55.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | - | chr8_1:64858199-64858218 | None:intergenic | 60.0% |
| !! | GAGAGCAGTTCTGATGGCGG+CGG | - | chr8_1:64858199-64858218 | None:intergenic | 60.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | - | chr8_1:64858187-64858206 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | - | chr8_1:64858196-64858215 | None:intergenic | 65.0% |
| !! | GATGGCGGCGGAGGTTTTCC+TGG | - | chr8_1:64858187-64858206 | None:intergenic | 65.0% |
| !! | AGCAGTTCTGATGGCGGCGG+AGG | - | chr8_1:64858196-64858215 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 64858165 | 64859184 | 64858165 | ID=Msa1207410;Name=Msa1207410 |
| chr8_1 | mRNA | 64858165 | 64859184 | 64858165 | ID=Msa1207410-mRNA-1;Parent=Msa1207410;Name=Msa1207410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.66|1|1|1|3|145|135 |
| chr8_1 | exon | 64858165 | 64858362 | 64858165 | ID=Msa1207410-mRNA-1:exon:21264;Parent=Msa1207410-mRNA-1 |
| chr8_1 | exon | 64858734 | 64858856 | 64858734 | ID=Msa1207410-mRNA-1:exon:21265;Parent=Msa1207410-mRNA-1 |
| chr8_1 | exon | 64858953 | 64859184 | 64858953 | ID=Msa1207410-mRNA-1:exon:21266;Parent=Msa1207410-mRNA-1 |
| chr8_1 | CDS | 64858165 | 64858362 | 64858165 | ID=Msa1207410-mRNA-1:cds;Parent=Msa1207410-mRNA-1 |
| chr8_1 | CDS | 64858734 | 64858856 | 64858734 | ID=Msa1207410-mRNA-1:cds;Parent=Msa1207410-mRNA-1 |
| chr8_1 | CDS | 64858953 | 64859039 | 64858953 | ID=Msa1207410-mRNA-1:cds;Parent=Msa1207410-mRNA-1 |
| chr8_1 | three_prime_UTR | 64859040 | 64859184 | 64859040 | ID=Msa1207410-mRNA-1:three_prime_utr;Parent=Msa1207410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
