AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAAATCTTCTTCAATT+TGG 0.134138 8_1:+66394589 Msa1208360:CDS
TGCATTTCTATTTATGATAT+TGG 0.192579 8_1:+66397655 Msa1208360:three_prime_UTR
CCACTGCTCTTGCAAACTTA+TGG 0.200587 8_1:-66400070 None:intergenic
GTTGCTGGATAATCTTATTT+AGG 0.225537 8_1:+66397360 Msa1208360:three_prime_UTR
CTGTTAGGCACTAGGTAGTT+AGG 0.243498 8_1:+66397247 Msa1208360:three_prime_UTR
AGTTGACTATACATGTATTT+TGG 0.254309 8_1:-66399705 None:intergenic
TTGAAGGAGAGGATCCATTT+TGG 0.260687 8_1:+66400144 Msa1208360:three_prime_UTR
ATTTGAAATTGATTCCAAAA+TGG 0.274454 8_1:-66400158 None:intergenic
GATTAGGAATGTCCTTAAAA+TGG 0.291784 8_1:-66400119 None:intergenic
TTATGATCACAAGCCTTCTT+TGG 0.292775 8_1:-66399003 None:intergenic
CTAAAAGTCTTTAAGAGATT+AGG 0.303530 8_1:-66400043 None:intergenic
AGTACACCAATGTTGTTTAC+AGG 0.312922 8_1:-66398922 None:intergenic
TATATGTTCAAATGTAAATA+TGG 0.316710 8_1:+66397285 Msa1208360:three_prime_UTR
GACTTGAGCAAGTTGAATTC+TGG 0.323031 8_1:+66395307 Msa1208360:CDS
AATTAAATTGTCTCCATTGC+AGG 0.323826 8_1:-66395792 None:intergenic
ATCATATTAAACAAATTATA+TGG 0.340086 8_1:-66400265 None:intergenic
TGCTACTATTTGTTATGCTT+TGG 0.340232 8_1:+66397452 Msa1208360:three_prime_UTR
CAATAAATTTGCAATCTTAG+TGG 0.354102 8_1:-66397581 None:intergenic
AACTTAGTTCTCATTGAGAT+TGG 0.361350 8_1:-66397097 None:intergenic
AAGCAAATGCCTATCGTGAT+AGG 0.362210 8_1:+66399732 Msa1208360:three_prime_UTR
TCCTCCCTACTGCAGGTTGC+TGG 0.377779 8_1:+66397345 Msa1208360:three_prime_UTR
TCTTTGAAATGATCAACATT+TGG 0.390474 8_1:-66399932 None:intergenic
TTCTTCAATTTGGATATTCA+AGG 0.402558 8_1:+66394599 Msa1208360:CDS
AGTGGACAAGGACAACAATA+AGG 0.423837 8_1:+66400088 Msa1208360:three_prime_UTR
GTAAACAACATTGGTGTACT+TGG 0.425488 8_1:+66398925 Msa1208360:three_prime_UTR
TTCCAGCGTTCCTCCTTCCC+TGG 0.428944 8_1:-66393823 None:intergenic
TCAGACAAAGGTCTTTGTGC+TGG 0.429865 8_1:+66395253 Msa1208360:CDS
TGTTAGGCACTAGGTAGTTA+GGG 0.431309 8_1:+66397248 Msa1208360:three_prime_UTR
TGAAGTCTTTAAAAGAGAAC+AGG 0.457083 8_1:+66398951 Msa1208360:three_prime_UTR
TCTAATGACTCGAATCCGTT+TGG 0.458922 8_1:+66397069 Msa1208360:three_prime_UTR
TTGAGATTCCTCCCTACTGC+AGG 0.462297 8_1:+66397338 Msa1208360:three_prime_UTR
GGACATTCCTAATCTATTGA+AGG 0.464122 8_1:+66400128 Msa1208360:three_prime_UTR
TTGAAGAATTAAACTGTGTC+CGG 0.466976 8_1:+66397042 Msa1208360:exon
GAAAAGGAAAACGAGGAAAA+CGG 0.472173 8_1:+66393849 Msa1208360:five_prime_UTR
CTTTATTTCTGTTAGGCACT+AGG 0.472552 8_1:+66397239 Msa1208360:three_prime_UTR
TCTAAAAGAAATACCAAAGA+AGG 0.473802 8_1:+66398990 Msa1208360:three_prime_UTR
GAAGAAACTTTATTTCTGTT+AGG 0.476932 8_1:+66397232 Msa1208360:three_prime_UTR
AGGAACGCTGGAAGCAGAAA+AGG 0.484016 8_1:+66393833 Msa1208360:five_prime_UTR
CAAGGACAACAATAAGGATC+TGG 0.487273 8_1:+66400094 Msa1208360:three_prime_UTR
GTTTACAGGCTGATCATTGA+AGG 0.489399 8_1:-66398908 None:intergenic
ATTCGAGTCATTAGAATATC+CGG 0.497035 8_1:-66397061 None:intergenic
AAGAGAGACGGCGAGAGGAG+AGG 0.501706 8_1:+66393912 Msa1208360:five_prime_UTR
ATTAAATTGTCTCCATTGCA+GGG 0.509397 8_1:-66395791 None:intergenic
ATCAACATTTGGAAAGTCTC+CGG 0.514256 8_1:-66399921 None:intergenic
TTAATATGATGCCTATGTAC+AGG 0.514589 8_1:+66400278 Msa1208360:three_prime_UTR
CCACGGCTGTCAAGATAAGC+AGG 0.514825 8_1:+66395284 Msa1208360:CDS
TGGAGAGGCAATCAAATTGA+AGG 0.517958 8_1:+66397675 Msa1208360:three_prime_UTR
GCTGGATAATCTTATTTAGG+AGG 0.519746 8_1:+66397363 Msa1208360:three_prime_UTR
AGACAATTTAATTTCATACA+TGG 0.522310 8_1:+66395802 Msa1208360:CDS
ACATTTGGAAAGTCTCCGGC+AGG 0.524880 8_1:-66399917 None:intergenic
AGGATTAATATTCATTCCAA+AGG 0.529956 8_1:-66397413 None:intergenic
ATCCTCTCCTTCAATAGATT+AGG 0.535773 8_1:-66400135 None:intergenic
ACACGTGTTACAGGTACAAA+GGG 0.536942 8_1:+66399881 Msa1208360:intron
TTAGCTTTCCCTATCACGAT+AGG 0.543279 8_1:-66399741 None:intergenic
AGCAAATGCCTATCGTGATA+GGG 0.544684 8_1:+66399733 Msa1208360:three_prime_UTR
CAGGTACGTGGCAAGCGAGT+TGG 0.549683 8_1:+66400297 Msa1208360:three_prime_UTR
AGGAGAGGAAAGTGTTGTGT+TGG 0.553945 8_1:+66393927 Msa1208360:five_prime_UTR
ACCGAAAATAATACAAGCTG+TGG 0.554537 8_1:+66399997 Msa1208360:three_prime_UTR
GTTGTTACAGTTTGGAAACA+AGG 0.555998 8_1:+66394571 Msa1208360:intron
AACTCATTCATAACCTGGAG+GGG 0.556820 8_1:+66399775 Msa1208360:three_prime_UTR
ATTACTGTTTCTTCAGACAA+AGG 0.561054 8_1:+66395241 Msa1208360:CDS
TTCCTAATCTATTGAAGGAG+AGG 0.567982 8_1:+66400133 Msa1208360:three_prime_UTR
AAATGTTGATCATTTCAAAG+AGG 0.573112 8_1:+66399934 Msa1208360:three_prime_UTR
ATTATCCAGCAACCTGCAGT+AGG 0.576753 8_1:-66397350 None:intergenic
AACCAGGGAAGGAGGAACGC+TGG 0.578571 8_1:+66393821 Msa1208360:five_prime_UTR
TTGAGATTGGAATCACCAAA+CGG 0.579236 8_1:-66397084 None:intergenic
ACTCATTCATAACCTGGAGG+GGG 0.584199 8_1:+66399776 Msa1208360:three_prime_UTR
TTCAATTCAAATCCCTGCAA+TGG 0.587104 8_1:+66395779 Msa1208360:CDS
AAACTCATTCATAACCTGGA+GGG 0.592598 8_1:+66399774 Msa1208360:three_prime_UTR
CCTGCTTATCTTGACAGCCG+TGG 0.594322 8_1:-66395284 None:intergenic
AACGAAAGAGAGACGGCGAG+AGG 0.594423 8_1:+66393907 Msa1208360:five_prime_UTR
TTCTATTTATGATATTGGAG+AGG 0.595194 8_1:+66397660 Msa1208360:three_prime_UTR
GTTTGCAAGAGCAGTGGACA+AGG 0.596035 8_1:+66400076 Msa1208360:three_prime_UTR
GTACGGGAACGAGAGAAAGA+AGG 0.597431 8_1:+66393783 None:intergenic
GGAGTTCTATCTCTCCCTGC+CGG 0.603820 8_1:+66399902 Msa1208360:three_prime_UTR
AACACGTGTTACAGGTACAA+AGG 0.616391 8_1:+66399880 Msa1208360:intron
GATCAGCCTGTAAACAACAT+TGG 0.617494 8_1:+66398916 Msa1208360:three_prime_UTR
CCATAAGTTTGCAAGAGCAG+TGG 0.618027 8_1:+66400070 Msa1208360:three_prime_UTR
TTATCCAGCAACCTGCAGTA+GGG 0.626919 8_1:-66397349 None:intergenic
CTTGCCACGTACCTGTACAT+AGG 0.628289 8_1:-66400289 None:intergenic
TCCAGCAACCTGCAGTAGGG+AGG 0.636504 8_1:-66397346 None:intergenic
CTCATTCATAACCTGGAGGG+GGG 0.639818 8_1:+66399777 Msa1208360:three_prime_UTR
TTGTGCTGGAATCAACTCCA+CGG 0.642170 8_1:+66395267 Msa1208360:CDS
AGGTGAAAACGAAAGAGAGA+CGG 0.651922 8_1:+66393900 Msa1208360:five_prime_UTR
GGAAGCAGAAAAGGAAAACG+AGG 0.667902 8_1:+66393842 Msa1208360:five_prime_UTR
CACGGCTGTCAAGATAAGCA+GGG 0.686355 8_1:+66395285 Msa1208360:CDS
GAGAGAAAGAAGGAACTCGT+CGG 0.687998 8_1:+66393793 None:intergenic
AATGAAATGAATGAAGACCA+AGG 0.691600 8_1:+66393959 Msa1208360:exon
CATTTGGAAAGTCTCCGGCA+GGG 0.691744 8_1:-66399916 None:intergenic
AAAACTCATTCATAACCTGG+AGG 0.695365 8_1:+66399773 Msa1208360:three_prime_UTR
GATGCCTATGTACAGGTACG+TGG 0.714052 8_1:+66400285 Msa1208360:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTTTATTTTAATTG+AGG + chr8_1:66394289-66394308 Msa1208360:intron 10.0%
!!! CAATATTCTAAAATAAAAAT+CGG - chr8_1:66394662-66394681 None:intergenic 10.0%
!!! AAGAAAATTATGTTTTATAT+AGG + chr8_1:66396255-66396274 Msa1208360:intron 10.0%
!!! AGAAAATTATGTTTTATATA+GGG + chr8_1:66396256-66396275 Msa1208360:intron 10.0%
!! TTAATAACTTTATTACAAAA+AGG + chr8_1:66396338-66396357 Msa1208360:intron 10.0%
!! TAATAACTTTATTACAAAAA+GGG + chr8_1:66396339-66396358 Msa1208360:intron 10.0%
!! AACTAAAAATTAATAAAGTT+GGG - chr8_1:66396430-66396449 None:intergenic 10.0%
!! TAACTAAAAATTAATAAAGT+TGG - chr8_1:66396431-66396450 None:intergenic 10.0%
!!! TTTTTAAAATTTTCTTCTAT+AGG - chr8_1:66396671-66396690 None:intergenic 10.0%
!!! AATTTTTTAAATTTTTTGTG+TGG + chr8_1:66397479-66397498 Msa1208360:three_prime_UTR 10.0%
!!! TTTTCTTATGAAATTAATAT+GGG + chr8_1:66399398-66399417 Msa1208360:intron 10.0%
!! ATCATATTAAACAAATTATA+TGG - chr8_1:66400268-66400287 None:intergenic 10.0%
!!! AAATTGTGATTTTTAATTCA+AGG + chr8_1:66394198-66394217 Msa1208360:intron 15.0%
!!! TTATTCTTACAGAATTTTTT+TGG + chr8_1:66394229-66394248 Msa1208360:intron 15.0%
!!! TATTCTTACAGAATTTTTTT+GGG + chr8_1:66394230-66394249 Msa1208360:intron 15.0%
!! TTCAATAAAATGAACAAAAA+AGG - chr8_1:66394521-66394540 None:intergenic 15.0%
!! AATAAAAAATAGAACAACTA+TGG - chr8_1:66394638-66394657 None:intergenic 15.0%
!!! AAATAAACATATCTTTTCAT+AGG - chr8_1:66395190-66395209 None:intergenic 15.0%
!! ATGTTTATTTATAGTGATTA+TGG + chr8_1:66395200-66395219 Msa1208360:intron 15.0%
!!! TGTTGTTTTTTTTTTTTTGT+AGG - chr8_1:66396148-66396167 None:intergenic 15.0%
!!! GAAAATTATGTTTTATATAG+GGG + chr8_1:66396257-66396276 Msa1208360:intron 15.0%
!! TATTAACATACTAAATAGTA+TGG - chr8_1:66396324-66396343 None:intergenic 15.0%
!!! ATGAATTTAATTGGTTTAAA+GGG + chr8_1:66396959-66396978 Msa1208360:intron 15.0%
!! TACTATATCAAAAAAGATTA+GGG - chr8_1:66397133-66397152 None:intergenic 15.0%
!! TTACTATATCAAAAAAGATT+AGG - chr8_1:66397134-66397153 None:intergenic 15.0%
!! TATATGTTCAAATGTAAATA+TGG + chr8_1:66397285-66397304 Msa1208360:three_prime_UTR 15.0%
!! GAAAAAACTAAGTTAATTAT+TGG + chr8_1:66397315-66397334 Msa1208360:three_prime_UTR 15.0%
!! ACAATTTAAATATATCCATA+TGG + chr8_1:66398571-66398590 Msa1208360:intron 15.0%
!! ATAATAACAAAGAAAATCTT+GGG - chr8_1:66398819-66398838 None:intergenic 15.0%
!! AATAATAACAAAGAAAATCT+TGG - chr8_1:66398820-66398839 None:intergenic 15.0%
!!! GTTTTCTTATGAAATTAATA+TGG + chr8_1:66399397-66399416 Msa1208360:intron 15.0%
!!! TTGCTTAAAATTTTAAGAAA+TGG - chr8_1:66400393-66400412 None:intergenic 15.0%
!! TGAAGAGAAAAAATAAAAAC+TGG + chr8_1:66393873-66393892 Msa1208360:five_prime_UTR 20.0%
!! AAAAAATAAAAACTGGAAGA+AGG + chr8_1:66393880-66393899 Msa1208360:five_prime_UTR 20.0%
!!! TTTTGATTAAACAAAAGATG+AGG - chr8_1:66393991-66394010 None:intergenic 20.0%
!! GTTTAATCAAAAATCATGAT+CGG + chr8_1:66393999-66394018 Msa1208360:intron 20.0%
!! GAATTAAAAATCACAATTTG+CGG - chr8_1:66394197-66394216 None:intergenic 20.0%
!! TGTATATCATAAGTGAAAAT+TGG + chr8_1:66394355-66394374 Msa1208360:intron 20.0%
!!! TACAGATTTTTTGTTTTGTT+TGG + chr8_1:66394458-66394477 Msa1208360:intron 20.0%
!!! TTTTAATTTGGTTTGTTGTT+TGG + chr8_1:66394910-66394929 Msa1208360:intron 20.0%
!!! CAAAGGTTATAAATTTTTTC+GGG - chr8_1:66395462-66395481 None:intergenic 20.0%
!!! GCAAAGGTTATAAATTTTTT+CGG - chr8_1:66395463-66395482 None:intergenic 20.0%
!!! AGACAATTTAATTTCATACA+TGG + chr8_1:66395802-66395821 Msa1208360:CDS 20.0%
!!! GATTTTATTTGAGATGATTT+AGG + chr8_1:66396079-66396098 Msa1208360:intron 20.0%
!! CGATATTTGTACTTATTATT+CGG - chr8_1:66396370-66396389 None:intergenic 20.0%
!! AAGTTATAAGCAAAATATCA+AGG + chr8_1:66396395-66396414 Msa1208360:intron 20.0%
!! GATTTGTCTGTTAAAAAAAT+TGG - chr8_1:66396504-66396523 None:intergenic 20.0%
!!! TAATGTTTTTCTACAATGAA+GGG - chr8_1:66396808-66396827 None:intergenic 20.0%
!!! TTAATGTTTTTCTACAATGA+AGG - chr8_1:66396809-66396828 None:intergenic 20.0%
!! AACTATAAATTTCAAAAGCT+TGG - chr8_1:66396854-66396873 None:intergenic 20.0%
!! TTTAGTTGCAAATAAAGAAA+AGG + chr8_1:66396899-66396918 Msa1208360:intron 20.0%
!! TTAGTTGCAAATAAAGAAAA+GGG + chr8_1:66396900-66396919 Msa1208360:intron 20.0%
!! TAAATTCATGAAAACACAAT+CGG - chr8_1:66396948-66396967 None:intergenic 20.0%
!!! TGTGTTTTCATGAATTTAAT+TGG + chr8_1:66396950-66396969 Msa1208360:intron 20.0%
!!! CATGAATTTAATTGGTTTAA+AGG + chr8_1:66396958-66396977 Msa1208360:intron 20.0%
!! AGAAAAAATTGAATAACCTT+TGG + chr8_1:66397397-66397416 Msa1208360:three_prime_UTR 20.0%
!! AGCAATCATAAAAAAATTCA+AGG - chr8_1:66397436-66397455 None:intergenic 20.0%
!!! TTTTTAAATTTTTTGTGTGG+AGG + chr8_1:66397482-66397501 Msa1208360:three_prime_UTR 20.0%
!!! TTTTAAATTTTTTGTGTGGA+GGG + chr8_1:66397483-66397502 Msa1208360:three_prime_UTR 20.0%
!!! TCAGTTTTTTCTGTTTTATT+TGG + chr8_1:66397556-66397575 Msa1208360:three_prime_UTR 20.0%
!! TGCATTTCTATTTATGATAT+TGG + chr8_1:66397655-66397674 Msa1208360:three_prime_UTR 20.0%
!!! TTTCTTTTAGATATGTAAGA+AGG - chr8_1:66398981-66399000 None:intergenic 20.0%
!!! CATGTACTTTTTAGTATATT+TGG + chr8_1:66399180-66399199 Msa1208360:intron 20.0%
!!! TACTTTTTAGTATATTTGGT+GGG + chr8_1:66399184-66399203 Msa1208360:intron 20.0%
!!! TGATATTTTATTTAGTGTGA+AGG + chr8_1:66399429-66399448 Msa1208360:intron 20.0%
!!! GATATTTTATTTAGTGTGAA+GGG + chr8_1:66399430-66399449 Msa1208360:intron 20.0%
!!! ATATTTTATTTAGTGTGAAG+GGG + chr8_1:66399431-66399450 Msa1208360:intron 20.0%
!! CTTAGATTTATAATCTAAGA+GGG - chr8_1:66399498-66399517 None:intergenic 20.0%
!! AATATTAAATGTTAGCATAG+TGG - chr8_1:66399595-66399614 None:intergenic 20.0%
!!! ATTTGAAATTGATTCCAAAA+TGG - chr8_1:66400161-66400180 None:intergenic 20.0%
!!! ATTCACTTTTAATAAAGAGA+GGG - chr8_1:66400194-66400213 None:intergenic 20.0%
!! TTCTGGAAAAACAAAAAACT+TGG - chr8_1:66394079-66394098 None:intergenic 25.0%
!!! TTGTTTTTCCAGAATTTTCT+TGG + chr8_1:66394085-66394104 Msa1208360:intron 25.0%
!!! TTACAGAATTTTTTTGGGTT+AGG + chr8_1:66394235-66394254 Msa1208360:intron 25.0%
!!! TACAGAATTTTTTTGGGTTA+GGG + chr8_1:66394236-66394255 Msa1208360:intron 25.0%
!!! CAAATTTTTTCACTTGTTTG+TGG - chr8_1:66394383-66394402 None:intergenic 25.0%
! ATTTGAGAGAGAAGAAATAT+TGG + chr8_1:66394398-66394417 Msa1208360:intron 25.0%
! TTTGAGAGAGAAGAAATATT+GGG + chr8_1:66394399-66394418 Msa1208360:intron 25.0%
!!! ATTTTTTGTTTTGTTTGGTC+TGG + chr8_1:66394463-66394482 Msa1208360:intron 25.0%
!!! TTTTTTGTTTTGTTTGGTCT+GGG + chr8_1:66394464-66394483 Msa1208360:intron 25.0%
! GAACAAAAAAGGATTTCTTT+AGG - chr8_1:66394510-66394529 None:intergenic 25.0%
! TTCTTCAATTTGGATATTCA+AGG + chr8_1:66394599-66394618 Msa1208360:CDS 25.0%
!! TGACATGTATTGAGAATTTT+TGG + chr8_1:66395085-66395104 Msa1208360:intron 25.0%
!! TTTTCATAGGAACAAACTTT+TGG - chr8_1:66395177-66395196 None:intergenic 25.0%
! CGATGTATAAATTGTCTATA+AGG + chr8_1:66395482-66395501 Msa1208360:intron 25.0%
! TAGAAAATAAATATGGTGCA+GGG - chr8_1:66395858-66395877 None:intergenic 25.0%
! CAGGTTGTAGAAAATAAATA+TGG - chr8_1:66395865-66395884 None:intergenic 25.0%
! TTAGAACATCTAACTATCTA+AGG - chr8_1:66395906-66395925 None:intergenic 25.0%
! TAATAGTAATCTTCTATCCT+AGG + chr8_1:66396034-66396053 Msa1208360:intron 25.0%
! AATAGTAATCTTCTATCCTA+GGG + chr8_1:66396035-66396054 Msa1208360:intron 25.0%
!!! TTTTTTTTTTTTGTAGGCTG+TGG - chr8_1:66396142-66396161 None:intergenic 25.0%
!!! TTTTAGTTAGTCTTTTGCTA+TGG + chr8_1:66396442-66396461 Msa1208360:intron 25.0%
!! AATTTTCTTCTATAGGACTT+AGG - chr8_1:66396664-66396683 None:intergenic 25.0%
!!! TGTTTTTTACAGATGTGTAT+TGG + chr8_1:66397174-66397193 Msa1208360:three_prime_UTR 25.0%
!!! GAAGAAACTTTATTTCTGTT+AGG + chr8_1:66397232-66397251 Msa1208360:three_prime_UTR 25.0%
! AGGATTAATATTCATTCCAA+AGG - chr8_1:66397416-66397435 None:intergenic 25.0%
! AAAACAGAAAAAACTGAAGA+GGG - chr8_1:66397553-66397572 None:intergenic 25.0%
! TAAAACAGAAAAAACTGAAG+AGG - chr8_1:66397554-66397573 None:intergenic 25.0%
! CAATAAATTTGCAATCTTAG+TGG - chr8_1:66397584-66397603 None:intergenic 25.0%
! TTCTATTTATGATATTGGAG+AGG + chr8_1:66397660-66397679 Msa1208360:three_prime_UTR 25.0%
!!! ATAATCCTGGTTTTTAATCA+TGG + chr8_1:66397699-66397718 Msa1208360:intron 25.0%
!! TTTCATTTTCATGCAGTAAA+AGG + chr8_1:66397752-66397771 Msa1208360:intron 25.0%
! TACATACACACTTATATGAT+AGG - chr8_1:66398605-66398624 None:intergenic 25.0%
!!! AAACTATCTTTTAGAGCTTT+TGG + chr8_1:66398695-66398714 Msa1208360:intron 25.0%
! TCTAAAAGAAATACCAAAGA+AGG + chr8_1:66398990-66399009 Msa1208360:three_prime_UTR 25.0%
! TGTATCTCATCATAGAATTT+AGG - chr8_1:66399110-66399129 None:intergenic 25.0%
! CAATTATCTTTCAACTTATG+TGG - chr8_1:66399159-66399178 None:intergenic 25.0%
!! CACATAAGTTGAAAGATAAT+TGG + chr8_1:66399157-66399176 Msa1208360:intron 25.0%
!!! GTACTTTTTAGTATATTTGG+TGG + chr8_1:66399183-66399202 Msa1208360:intron 25.0%
! CAACAAAAATTTGCATAACA+TGG - chr8_1:66399252-66399271 None:intergenic 25.0%
! TCTTATGAAATTAATATGGG+AGG + chr8_1:66399401-66399420 Msa1208360:intron 25.0%
! CTTATGAAATTAATATGGGA+GGG + chr8_1:66399402-66399421 Msa1208360:intron 25.0%
! TTATGAAATTAATATGGGAG+GGG + chr8_1:66399403-66399422 Msa1208360:intron 25.0%
! GCTTAGATTTATAATCTAAG+AGG - chr8_1:66399499-66399518 None:intergenic 25.0%
! TCTATTGAAGTTACATTTCT+TGG + chr8_1:66399624-66399643 Msa1208360:intron 25.0%
! ATTCATTGATCTACATGTAT+AGG - chr8_1:66399664-66399683 None:intergenic 25.0%
!! AGTTGACTATACATGTATTT+TGG - chr8_1:66399708-66399727 None:intergenic 25.0%
!!! TCTTTGAAATGATCAACATT+TGG - chr8_1:66399935-66399954 None:intergenic 25.0%
! AAATGTTGATCATTTCAAAG+AGG + chr8_1:66399934-66399953 Msa1208360:three_prime_UTR 25.0%
!! CTAAAAGTCTTTAAGAGATT+AGG - chr8_1:66400046-66400065 None:intergenic 25.0%
!!! CATTCACTTTTAATAAAGAG+AGG - chr8_1:66400195-66400214 None:intergenic 25.0%
!! TTCTATACTCTTTTACTTAG+TGG + chr8_1:66400336-66400355 Msa1208360:three_prime_UTR 25.0%
AATGAAATGAATGAAGACCA+AGG + chr8_1:66393959-66393978 Msa1208360:exon 30.0%
AAAAGATGAGGAAATTACCT+TGG - chr8_1:66393979-66393998 None:intergenic 30.0%
! TTTCCAGAATTTTCTTGGAT+CGG + chr8_1:66394090-66394109 Msa1208360:intron 30.0%
!!! AGGGTTTGATCTTTTGATTT+TGG + chr8_1:66394309-66394328 Msa1208360:intron 30.0%
!!! GGGTTTGATCTTTTGATTTT+GGG + chr8_1:66394310-66394329 Msa1208360:intron 30.0%
!! TGTTTGTTGTTGTTACAGTT+TGG + chr8_1:66394563-66394582 Msa1208360:intron 30.0%
CAAGGAAATCTTCTTCAATT+TGG + chr8_1:66394589-66394608 Msa1208360:CDS 30.0%
!! TTGAGTTTGTTGATTGAAGT+TGG + chr8_1:66394679-66394698 Msa1208360:intron 30.0%
! GATTGAAGTTGGTCTAATTA+TGG + chr8_1:66394690-66394709 Msa1208360:intron 30.0%
! AGTTGGTCTAATTATGGAAA+TGG + chr8_1:66394696-66394715 Msa1208360:intron 30.0%
! CTTTTTCCTTAATGTATCTC+CGG + chr8_1:66394860-66394879 Msa1208360:intron 30.0%
!!! TCTGGGTTTCGATTTTAATT+TGG + chr8_1:66394898-66394917 Msa1208360:intron 30.0%
!! TTTCAGTTTGTTGTTTGGTT+TGG + chr8_1:66394936-66394955 Msa1208360:intron 30.0%
! ATTACTGTTTCTTCAGACAA+AGG + chr8_1:66395241-66395260 Msa1208360:CDS 30.0%
AAACAAAACTGATGCAATTG+TGG - chr8_1:66395394-66395413 None:intergenic 30.0%
AGACAATTTATACATCGCAA+AGG - chr8_1:66395479-66395498 None:intergenic 30.0%
!!! AAATATTTTGATGCGCATAG+TGG + chr8_1:66395536-66395555 Msa1208360:intron 30.0%
TAACTTATGTTCGAATTGTC+AGG - chr8_1:66395646-66395665 None:intergenic 30.0%
! GAAAGTAATGCTTCTCTTTT+TGG + chr8_1:66395666-66395685 Msa1208360:intron 30.0%
ACAGTCTATTAGCAAAGAAA+GGG - chr8_1:66395705-66395724 None:intergenic 30.0%
ACTGTCTAATGTGATTGATT+GGG + chr8_1:66395720-66395739 Msa1208360:intron 30.0%
ATTAAATTGTCTCCATTGCA+GGG - chr8_1:66395794-66395813 None:intergenic 30.0%
AATTAAATTGTCTCCATTGC+AGG - chr8_1:66395795-66395814 None:intergenic 30.0%
GTAGAAAATAAATATGGTGC+AGG - chr8_1:66395859-66395878 None:intergenic 30.0%
!!! TCCTTGTTTTAGTGATCTAA+GGG - chr8_1:66396105-66396124 None:intergenic 30.0%
!!! TTCCTTGTTTTAGTGATCTA+AGG - chr8_1:66396106-66396125 None:intergenic 30.0%
! TAAATGACCTAATGGATGAA+TGG + chr8_1:66396590-66396609 Msa1208360:intron 30.0%
! AAATGACCTAATGGATGAAT+GGG + chr8_1:66396591-66396610 Msa1208360:intron 30.0%
ATTAAATAACCAAGAGCAAG+AGG - chr8_1:66396637-66396656 None:intergenic 30.0%
! ATGTAATTTTCCCTGCATTA+TGG + chr8_1:66396733-66396752 Msa1208360:intron 30.0%
! TGTAATTTTCCCTGCATTAT+GGG + chr8_1:66396734-66396753 Msa1208360:intron 30.0%
TCACCAGAAAACATTAAAAG+CGG - chr8_1:66396778-66396797 None:intergenic 30.0%
!! ATTTATAGTTTGCTGAGTGA+CGG + chr8_1:66396864-66396883 Msa1208360:intron 30.0%
TTGAAGAATTAAACTGTGTC+CGG + chr8_1:66397042-66397061 Msa1208360:exon 30.0%
ATTCGAGTCATTAGAATATC+CGG - chr8_1:66397064-66397083 None:intergenic 30.0%
! AACTTAGTTCTCATTGAGAT+TGG - chr8_1:66397100-66397119 None:intergenic 30.0%
! GTTGCTGGATAATCTTATTT+AGG + chr8_1:66397360-66397379 Msa1208360:three_prime_UTR 30.0%
!! TGCTACTATTTGTTATGCTT+TGG + chr8_1:66397452-66397471 Msa1208360:three_prime_UTR 30.0%
! TCAAATTGAAGGTATAATCC+TGG + chr8_1:66397686-66397705 Msa1208360:intron 30.0%
GTGGATAGAAATTAGATTTG+TGG + chr8_1:66397774-66397793 Msa1208360:intron 30.0%
ATTGATTGCTATACTACAAC+TGG + chr8_1:66397920-66397939 Msa1208360:intron 30.0%
ACTGTTGTACCTAATTAAAG+TGG + chr8_1:66398226-66398245 Msa1208360:intron 30.0%
TTGTACCTAATTAAAGTGGT+AGG + chr8_1:66398230-66398249 Msa1208360:intron 30.0%
TGTACCTAATTAAAGTGGTA+GGG + chr8_1:66398231-66398250 Msa1208360:intron 30.0%
TATAAGTATGCCAATGTACA+TGG + chr8_1:66398463-66398482 Msa1208360:intron 30.0%
! CTCTTGTCAATATTTTGTCT+TGG - chr8_1:66398501-66398520 None:intergenic 30.0%
CAAGACAAAATATTGACAAG+AGG + chr8_1:66398499-66398518 Msa1208360:intron 30.0%
! TGAAGTCTTTAAAAGAGAAC+AGG + chr8_1:66398951-66398970 Msa1208360:three_prime_UTR 30.0%
TATGATGAGATACATTTGTG+CGG + chr8_1:66399116-66399135 Msa1208360:intron 30.0%
GGTGGGAAAACATTAATAAA+AGG + chr8_1:66399201-66399220 Msa1208360:intron 30.0%
!! TATTGATTTCATAGCTGTTG+TGG + chr8_1:66399275-66399294 Msa1208360:intron 30.0%
! TAAGCTGAAATTCTAGAGAT+TGG - chr8_1:66399303-66399322 None:intergenic 30.0%
TATGAAATTAATATGGGAGG+GGG + chr8_1:66399404-66399423 Msa1208360:intron 30.0%
ACAAAAACTCATTCATAACC+TGG + chr8_1:66399770-66399789 Msa1208360:three_prime_UTR 30.0%
AAAATTGAAACACGTGTTAC+AGG + chr8_1:66399872-66399891 Msa1208360:intron 30.0%
! TCCACAGCTTGTATTATTTT+CGG - chr8_1:66400001-66400020 None:intergenic 30.0%
GATTAGGAATGTCCTTAAAA+TGG - chr8_1:66400122-66400141 None:intergenic 30.0%
TTAATATGATGCCTATGTAC+AGG + chr8_1:66400278-66400297 Msa1208360:three_prime_UTR 30.0%
GAAAAGGAAAACGAGGAAAA+CGG + chr8_1:66393849-66393868 Msa1208360:five_prime_UTR 35.0%
TTCTGATTCTAAATCCAGAG+CGG - chr8_1:66394157-66394176 None:intergenic 35.0%
GTTGTTACAGTTTGGAAACA+AGG + chr8_1:66394571-66394590 Msa1208360:intron 35.0%
AACATACCGGAGATACATTA+AGG - chr8_1:66394869-66394888 None:intergenic 35.0%
AAAATCGAAACCCAGAACAA+AGG - chr8_1:66394894-66394913 None:intergenic 35.0%
!! GGTGATTTCAGTTTGTTGTT+TGG + chr8_1:66394931-66394950 Msa1208360:intron 35.0%
TTCTGATTCTAAATCCAGAG+CGG - chr8_1:66394157-66394176 None:intergenic 35.0%
! CTCTGGATTTAGAATCAGAA+GGG + chr8_1:66394157-66394176 Msa1208360:intron 35.0%
TTGAAACTGCAGACAATTGT+GGG - chr8_1:66395418-66395437 None:intergenic 35.0%
! AGTAATGCTTCTCTTTTTGG+TGG + chr8_1:66395669-66395688 Msa1208360:intron 35.0%
GACAGTCTATTAGCAAAGAA+AGG - chr8_1:66395706-66395725 None:intergenic 35.0%
GACTGTCTAATGTGATTGAT+TGG + chr8_1:66395719-66395738 Msa1208360:intron 35.0%
ATGTGATTGATTGGGATTTC+TGG + chr8_1:66395728-66395747 Msa1208360:intron 35.0%
TTCAATTCAAATCCCTGCAA+TGG + chr8_1:66395779-66395798 Msa1208360:CDS 35.0%
AAATAAATATGGTGCAGGGA+AGG - chr8_1:66395854-66395873 None:intergenic 35.0%
! GAGAAGTAAAGCATCATATG+CGG + chr8_1:66395953-66395972 Msa1208360:intron 35.0%
AAGCATCATATGCGGATAAT+AGG + chr8_1:66395961-66395980 Msa1208360:intron 35.0%
CGTAAAACAATAATCACCCT+AGG - chr8_1:66396054-66396073 None:intergenic 35.0%
ATATCTCCCATTCATCCATT+AGG - chr8_1:66396600-66396619 None:intergenic 35.0%
ACCAGAAAACATTAAAAGCG+GGG - chr8_1:66396776-66396795 None:intergenic 35.0%
CACCAGAAAACATTAAAAGC+GGG - chr8_1:66396777-66396796 None:intergenic 35.0%
! ATGAAAACACAATCGGTTTC+AGG - chr8_1:66396941-66396960 None:intergenic 35.0%
!! CTTGGTGTTGAATTGTTCTT+TGG + chr8_1:66396986-66397005 Msa1208360:intron 35.0%
!!! TGTTCTTTGGTTTTGTGTTC+AGG + chr8_1:66396999-66397018 Msa1208360:intron 35.0%
TTGAGATTGGAATCACCAAA+CGG - chr8_1:66397087-66397106 None:intergenic 35.0%
AAAAAGATTAGGGAGAAGAG+AGG - chr8_1:66397123-66397142 None:intergenic 35.0%
!! CTTTATTTCTGTTAGGCACT+AGG + chr8_1:66397239-66397258 Msa1208360:three_prime_UTR 35.0%
! GCTGGATAATCTTATTTAGG+AGG + chr8_1:66397363-66397382 Msa1208360:three_prime_UTR 35.0%
!!! TAAATTTTTTGTGTGGAGGG+TGG + chr8_1:66397486-66397505 Msa1208360:three_prime_UTR 35.0%
!!! AAATTTTTTGTGTGGAGGGT+GGG + chr8_1:66397487-66397506 Msa1208360:three_prime_UTR 35.0%
TCAAGCCATGATTAAAAACC+AGG - chr8_1:66397707-66397726 None:intergenic 35.0%
! CATTTTCATGCAGTAAAAGG+TGG + chr8_1:66397755-66397774 Msa1208360:intron 35.0%
!! GAGTGTTGTGTTTGTAGTTT+TGG + chr8_1:66397811-66397830 Msa1208360:intron 35.0%
CTTGTCTGCTAAACAAATTC+TGG - chr8_1:66397992-66398011 None:intergenic 35.0%
CTTATCAATCACAAGCTTCA+TGG - chr8_1:66398023-66398042 None:intergenic 35.0%
CATGAAGCTTGTGATTGATA+AGG + chr8_1:66398021-66398040 Msa1208360:intron 35.0%
AAGCTTGTGATTGATAAGGA+GGG + chr8_1:66398025-66398044 Msa1208360:intron 35.0%
! AAACGCTTTTCACCTCATAA+AGG + chr8_1:66398084-66398103 Msa1208360:intron 35.0%
! AACGCTTTTCACCTCATAAA+GGG + chr8_1:66398085-66398104 Msa1208360:intron 35.0%
! AACCTCCTGATCTAAAATCA+GGG - chr8_1:66398165-66398184 None:intergenic 35.0%
! AAACCTCCTGATCTAAAATC+AGG - chr8_1:66398166-66398185 None:intergenic 35.0%
GGTGTTCTGTTGTCAAAAAA+TGG + chr8_1:66398195-66398214 Msa1208360:intron 35.0%
GTACCTAATTAAAGTGGTAG+GGG + chr8_1:66398232-66398251 Msa1208360:intron 35.0%
ATTCCCCTACCACTTTAATT+AGG - chr8_1:66398238-66398257 None:intergenic 35.0%
TAAAGTGGTAGGGGAATATA+AGG + chr8_1:66398241-66398260 Msa1208360:intron 35.0%
TTGCACTTTAAGTCATCTAG+AGG + chr8_1:66398329-66398348 Msa1208360:intron 35.0%
TGCACTTTAAGTCATCTAGA+GGG + chr8_1:66398330-66398349 Msa1208360:intron 35.0%
TTGAGTTATTCTGTAGTGTG+TGG + chr8_1:66398424-66398443 Msa1208360:intron 35.0%
GACAAAATATTGACAAGAGG+TGG + chr8_1:66398502-66398521 Msa1208360:intron 35.0%
TGTTATCTTTGTCCAATGTC+TGG + chr8_1:66398539-66398558 Msa1208360:intron 35.0%
GTTATCTTTGTCCAATGTCT+GGG + chr8_1:66398540-66398559 Msa1208360:intron 35.0%
AAGAAAATCTTGGGTCTGTT+CGG - chr8_1:66398810-66398829 None:intergenic 35.0%
CTTGTGACATTGCCTTATAT+TGG + chr8_1:66398880-66398899 Msa1208360:intron 35.0%
TTGAAGGATCTGCCAATATA+AGG - chr8_1:66398895-66398914 None:intergenic 35.0%
! AGTACACCAATGTTGTTTAC+AGG - chr8_1:66398925-66398944 None:intergenic 35.0%
GTAAACAACATTGGTGTACT+TGG + chr8_1:66398925-66398944 Msa1208360:three_prime_UTR 35.0%
TTATGATCACAAGCCTTCTT+TGG - chr8_1:66399006-66399025 None:intergenic 35.0%
AACATGGTACAAAATGTGGT+AGG - chr8_1:66399236-66399255 None:intergenic 35.0%
GCATAACATGGTACAAAATG+TGG - chr8_1:66399240-66399259 None:intergenic 35.0%
GATTTCAGTTCAAACTCTGA+TGG - chr8_1:66399542-66399561 None:intergenic 35.0%
AAAACTCATTCATAACCTGG+AGG + chr8_1:66399773-66399792 Msa1208360:three_prime_UTR 35.0%
AAACTCATTCATAACCTGGA+GGG + chr8_1:66399774-66399793 Msa1208360:three_prime_UTR 35.0%
ATCAACATTTGGAAAGTCTC+CGG - chr8_1:66399924-66399943 None:intergenic 35.0%
ACCGAAAATAATACAAGCTG+TGG + chr8_1:66399997-66400016 Msa1208360:three_prime_UTR 35.0%
! AAGGATCTGGATCCATTTTA+AGG + chr8_1:66400107-66400126 Msa1208360:three_prime_UTR 35.0%
GGACATTCCTAATCTATTGA+AGG + chr8_1:66400128-66400147 Msa1208360:three_prime_UTR 35.0%
TTCCTAATCTATTGAAGGAG+AGG + chr8_1:66400133-66400152 Msa1208360:three_prime_UTR 35.0%
ATCCTCTCCTTCAATAGATT+AGG - chr8_1:66400138-66400157 None:intergenic 35.0%
AGGTGAAAACGAAAGAGAGA+CGG + chr8_1:66393900-66393919 Msa1208360:five_prime_UTR 40.0%
! GCTCTGGATTTAGAATCAGA+AGG + chr8_1:66394156-66394175 Msa1208360:intron 40.0%
TTTGGTCTGGGAAGAATTAC+TGG + chr8_1:66394476-66394495 Msa1208360:intron 40.0%
TTGGTCTGGGAAGAATTACT+GGG + chr8_1:66394477-66394496 Msa1208360:intron 40.0%
! TGGGAAGAATTACTGGGTTT+TGG + chr8_1:66394483-66394502 Msa1208360:intron 40.0%
CAGAACAAAGGTCAACATAC+CGG - chr8_1:66394882-66394901 None:intergenic 40.0%
GGTATGTTGACCTTTGTTCT+GGG + chr8_1:66394881-66394900 Msa1208360:intron 40.0%
! GCTCTGGATTTAGAATCAGA+AGG + chr8_1:66394156-66394175 Msa1208360:intron 40.0%
GGTAATGTGACTACTGTGTT+TGG + chr8_1:66395106-66395125 Msa1208360:intron 40.0%
! GACTTGAGCAAGTTGAATTC+TGG + chr8_1:66395307-66395326 Msa1208360:CDS 40.0%
TCTTTGTGTGTGTACTGTGA+TGG + chr8_1:66395340-66395359 Msa1208360:intron 40.0%
AACTGATGCAATTGTGGATG+TGG - chr8_1:66395388-66395407 None:intergenic 40.0%
CTTGAAACTGCAGACAATTG+TGG - chr8_1:66395419-66395438 None:intergenic 40.0%
CACAATTGTCTGCAGTTTCA+AGG + chr8_1:66395417-66395436 Msa1208360:intron 40.0%
! TGAAGATCTTTTGCATCACC+AGG + chr8_1:66395576-66395595 Msa1208360:intron 40.0%
! GAAGATCTTTTGCATCACCA+GGG + chr8_1:66395577-66395596 Msa1208360:intron 40.0%
CATTGTTCAACCACCACATA+TGG + chr8_1:66395601-66395620 Msa1208360:intron 40.0%
CAATCAACAACCATATGTGG+TGG - chr8_1:66395614-66395633 None:intergenic 40.0%
GGACAATCAACAACCATATG+TGG - chr8_1:66395617-66395636 None:intergenic 40.0%
GTTCGAATTGTCAGGACAAA+TGG - chr8_1:66395638-66395657 None:intergenic 40.0%
GTCTATTAGCAAAGAAAGGG+AGG - chr8_1:66395702-66395721 None:intergenic 40.0%
GCCCTTAGATCACTAAAACA+AGG + chr8_1:66396101-66396120 Msa1208360:intron 40.0%
AACAACATTGACCTCAGCAT+TGG + chr8_1:66396161-66396180 Msa1208360:intron 40.0%
TTCAGTGCTAACAACTAACC+TGG + chr8_1:66396531-66396550 Msa1208360:intron 40.0%
TCAATTGACTGATGTCATCC+AGG - chr8_1:66396552-66396571 None:intergenic 40.0%
TCAATTGAGACAGTGCAAGA+TGG + chr8_1:66396564-66396583 Msa1208360:intron 40.0%
GATGGAGCTAAATGACCTAA+TGG + chr8_1:66396582-66396601 Msa1208360:intron 40.0%
!! TCCCCGCTTTTAATGTTTTC+TGG + chr8_1:66396772-66396791 Msa1208360:intron 40.0%
! ATTGGTTTAAAGGGTGTGCT+TGG + chr8_1:66396968-66396987 Msa1208360:intron 40.0%
TCTAATGACTCGAATCCGTT+TGG + chr8_1:66397069-66397088 Msa1208360:three_prime_UTR 40.0%
TGTTAGGCACTAGGTAGTTA+GGG + chr8_1:66397248-66397267 Msa1208360:three_prime_UTR 40.0%
TGGAGAGGCAATCAAATTGA+AGG + chr8_1:66397675-66397694 Msa1208360:three_prime_UTR 40.0%
TACTACAACTGGCAGAGTAT+TGG + chr8_1:66397931-66397950 Msa1208360:intron 40.0%
! ACTACAACTGGCAGAGTATT+GGG + chr8_1:66397932-66397951 Msa1208360:intron 40.0%
GAAGCTTGTGATTGATAAGG+AGG + chr8_1:66398024-66398043 Msa1208360:intron 40.0%
TTGTGATTGATAAGGAGGGT+GGG + chr8_1:66398029-66398048 Msa1208360:intron 40.0%
! ACCTCCTGATCTAAAATCAG+GGG - chr8_1:66398164-66398183 None:intergenic 40.0%
! TAGATCAGGAGGTTTTCTTG+TGG + chr8_1:66398171-66398190 Msa1208360:intron 40.0%
! CATCTAGAGGGTTTTTGCTT+CGG + chr8_1:66398342-66398361 Msa1208360:intron 40.0%
! TTGCTTCGGTATTTTCCTTC+TGG + chr8_1:66398356-66398375 Msa1208360:intron 40.0%
! TGCTTCGGTATTTTCCTTCT+GGG + chr8_1:66398357-66398376 Msa1208360:intron 40.0%
TTGAATTGTCTTTGCCCAGA+AGG - chr8_1:66398374-66398393 None:intergenic 40.0%
TCAAAATCCAACCACTGTGT+GGG - chr8_1:66398408-66398427 None:intergenic 40.0%
ATATTGACAAGAGGTGGCAT+TGG + chr8_1:66398508-66398527 Msa1208360:intron 40.0%
TGATAGGCAGTTATGCCATA+TGG - chr8_1:66398589-66398608 None:intergenic 40.0%
GTTTACAGGCTGATCATTGA+AGG - chr8_1:66398911-66398930 None:intergenic 40.0%
GATCAGCCTGTAAACAACAT+TGG + chr8_1:66398916-66398935 Msa1208360:three_prime_UTR 40.0%
GCTTGGCATGTAATCTAAAG+AGG - chr8_1:66399567-66399586 None:intergenic 40.0%
TTAGCATAGTGGTAACTGCT+TGG - chr8_1:66399584-66399603 None:intergenic 40.0%
AAGCAAATGCCTATCGTGAT+AGG + chr8_1:66399732-66399751 Msa1208360:three_prime_UTR 40.0%
AGCAAATGCCTATCGTGATA+GGG + chr8_1:66399733-66399752 Msa1208360:three_prime_UTR 40.0%
! TTAGCTTTCCCTATCACGAT+AGG - chr8_1:66399744-66399763 None:intergenic 40.0%
AACTCATTCATAACCTGGAG+GGG + chr8_1:66399775-66399794 Msa1208360:three_prime_UTR 40.0%
AACACGTGTTACAGGTACAA+AGG + chr8_1:66399880-66399899 Msa1208360:intron 40.0%
ACACGTGTTACAGGTACAAA+GGG + chr8_1:66399881-66399900 Msa1208360:intron 40.0%
AGTGGACAAGGACAACAATA+AGG + chr8_1:66400088-66400107 Msa1208360:three_prime_UTR 40.0%
CAAGGACAACAATAAGGATC+TGG + chr8_1:66400094-66400113 Msa1208360:three_prime_UTR 40.0%
! TTGAAGGAGAGGATCCATTT+TGG + chr8_1:66400144-66400163 Msa1208360:three_prime_UTR 40.0%
GGAAGCAGAAAAGGAAAACG+AGG + chr8_1:66393842-66393861 Msa1208360:five_prime_UTR 45.0%
!! AGGAGAGGAAAGTGTTGTGT+TGG + chr8_1:66393927-66393946 Msa1208360:five_prime_UTR 45.0%
GCTCCGATCCAAGAAAATTC+TGG - chr8_1:66394096-66394115 None:intergenic 45.0%
TTGGATCGGAGCAACTTCAA+CGG + chr8_1:66394104-66394123 Msa1208360:intron 45.0%
TGATTCTAAATCCAGAGCGG+CGG - chr8_1:66394154-66394173 None:intergenic 45.0%
CGGTATGTTGACCTTTGTTC+TGG + chr8_1:66394880-66394899 Msa1208360:intron 45.0%
TGATTCTAAATCCAGAGCGG+CGG - chr8_1:66394154-66394173 None:intergenic 45.0%
TCAGACAAAGGTCTTTGTGC+TGG + chr8_1:66395253-66395272 Msa1208360:CDS 45.0%
TTGTGCTGGAATCAACTCCA+CGG + chr8_1:66395267-66395286 Msa1208360:CDS 45.0%
GTTGCATATGCAGTATGTGC+AGG - chr8_1:66395884-66395903 None:intergenic 45.0%
AATAGGACTGAGCTCGAAGT+TGG + chr8_1:66395978-66395997 Msa1208360:intron 45.0%
ATAGGACTGAGCTCGAAGTT+GGG + chr8_1:66395979-66395998 Msa1208360:intron 45.0%
GAATGGGAGATATGACCTGA+AGG + chr8_1:66396607-66396626 Msa1208360:intron 45.0%
! ATTTTCCCTGCATTATGGGC+TGG + chr8_1:66396738-66396757 Msa1208360:intron 45.0%
! TTTTCCCTGCATTATGGGCT+GGG + chr8_1:66396739-66396758 Msa1208360:intron 45.0%
!! AGTTTGCTGAGTGACGGATA+TGG + chr8_1:66396870-66396889 Msa1208360:intron 45.0%
!! GTTTGCTGAGTGACGGATAT+GGG + chr8_1:66396871-66396890 Msa1208360:intron 45.0%
!! TTTGCTGAGTGACGGATATG+GGG + chr8_1:66396872-66396891 Msa1208360:intron 45.0%
CTGTTAGGCACTAGGTAGTT+AGG + chr8_1:66397247-66397266 Msa1208360:three_prime_UTR 45.0%
TTATCCAGCAACCTGCAGTA+GGG - chr8_1:66397352-66397371 None:intergenic 45.0%
ATTATCCAGCAACCTGCAGT+AGG - chr8_1:66397353-66397372 None:intergenic 45.0%
CTTGTGATTGATAAGGAGGG+TGG + chr8_1:66398028-66398047 Msa1208360:intron 45.0%
! GCTTTTCACCTCATAAAGGG+CGG + chr8_1:66398088-66398107 Msa1208360:intron 45.0%
TCTTAGATGGATGTAGCGTG+CGG + chr8_1:66398117-66398136 Msa1208360:intron 45.0%
! ACCTCCCCTGATTTTAGATC+AGG + chr8_1:66398157-66398176 Msa1208360:intron 45.0%
! TCCTGATCTAAAATCAGGGG+AGG - chr8_1:66398161-66398180 None:intergenic 45.0%
! TCCCCTGATTTTAGATCAGG+AGG + chr8_1:66398160-66398179 Msa1208360:intron 45.0%
! ATCAGGAGGTTTTCTTGTGG+TGG + chr8_1:66398174-66398193 Msa1208360:intron 45.0%
TTTCTCCTATTCCCACACAG+TGG + chr8_1:66398394-66398413 Msa1208360:intron 45.0%
CTCAAAATCCAACCACTGTG+TGG - chr8_1:66398409-66398428 None:intergenic 45.0%
TGCCAATGTACATGGTTGCA+AGG + chr8_1:66398471-66398490 Msa1208360:intron 45.0%
AGCCTTGCAACCATGTACAT+TGG - chr8_1:66398476-66398495 None:intergenic 45.0%
! TCTGATGGATGCTAGCACAT+TGG - chr8_1:66399527-66399546 None:intergenic 45.0%
ACTCATTCATAACCTGGAGG+GGG + chr8_1:66399776-66399795 Msa1208360:three_prime_UTR 45.0%
CCACTGCTCTTGCAAACTTA+TGG - chr8_1:66400073-66400092 None:intergenic 45.0%
CCATAAGTTTGCAAGAGCAG+TGG + chr8_1:66400070-66400089 Msa1208360:three_prime_UTR 45.0%
!!! TTATTTTTTATTTTAATTGA+GGG + chr8_1:66394290-66394309 Msa1208360:intron 5.0%
!!! TTTTAGATATTTTAAATATT+TGG + chr8_1:66397855-66397874 Msa1208360:intron 5.0%
AACTCGTCGGCCAAAAACCA+GGG + chr8_1:66393806-66393825 Msa1208360:five_prime_UTR 50.0%
!! GTTCCTCCTTCCCTGGTTTT+TGG - chr8_1:66393819-66393838 None:intergenic 50.0%
AGGAACGCTGGAAGCAGAAA+AGG + chr8_1:66393833-66393852 Msa1208360:five_prime_UTR 50.0%
GGAAACGATTTCCGGTGCAT+CGG - chr8_1:66394133-66394152 None:intergenic 50.0%
CACGGCTGTCAAGATAAGCA+GGG + chr8_1:66395285-66395304 Msa1208360:CDS 50.0%
TGCGCATAGTGGTTGTTCTG+TGG + chr8_1:66395547-66395566 Msa1208360:intron 50.0%
TGGTGGTTGAACAATGTCCC+TGG - chr8_1:66395597-66395616 None:intergenic 50.0%
GTGACAGTGTACCAATGCTG+AGG - chr8_1:66396175-66396194 None:intergenic 50.0%
AGAGCAAGAGGAACACCTTC+AGG - chr8_1:66396625-66396644 None:intergenic 50.0%
!! GAAGGTGTTCCTCTTGCTCT+TGG + chr8_1:66396625-66396644 Msa1208360:intron 50.0%
TCAACCCAGCCCATAATGCA+GGG - chr8_1:66396746-66396765 None:intergenic 50.0%
ATCAACCCAGCCCATAATGC+AGG - chr8_1:66396747-66396766 None:intergenic 50.0%
!! TTGCTGAGTGACGGATATGG+GGG + chr8_1:66396873-66396892 Msa1208360:intron 50.0%
TTGAGATTCCTCCCTACTGC+AGG + chr8_1:66397338-66397357 Msa1208360:three_prime_UTR 50.0%
!! CAACTGGCAGAGTATTGGGT+TGG + chr8_1:66397936-66397955 Msa1208360:intron 50.0%
GATACAGACCGCCCTTTATG+AGG - chr8_1:66398099-66398118 None:intergenic 50.0%
AGGGCGGTCTGTATCTTAGA+TGG + chr8_1:66398104-66398123 Msa1208360:intron 50.0%
TCCTATTCCCACACAGTGGT+TGG + chr8_1:66398398-66398417 Msa1208360:intron 50.0%
TCCAACCACTGTGTGGGAAT+AGG - chr8_1:66398402-66398421 None:intergenic 50.0%
TCTTTGTCCAATGTCTGGGC+TGG + chr8_1:66398544-66398563 Msa1208360:intron 50.0%
TGTTTGTCCAGCCCAGACAT+TGG - chr8_1:66398554-66398573 None:intergenic 50.0%
CTCATTCATAACCTGGAGGG+GGG + chr8_1:66399777-66399796 Msa1208360:three_prime_UTR 50.0%
CATTTGGAAAGTCTCCGGCA+GGG - chr8_1:66399919-66399938 None:intergenic 50.0%
ACATTTGGAAAGTCTCCGGC+AGG - chr8_1:66399920-66399939 None:intergenic 50.0%
GTTTGCAAGAGCAGTGGACA+AGG + chr8_1:66400076-66400095 Msa1208360:three_prime_UTR 50.0%
GATGCCTATGTACAGGTACG+TGG + chr8_1:66400285-66400304 Msa1208360:three_prime_UTR 50.0%
CTTGCCACGTACCTGTACAT+AGG - chr8_1:66400292-66400311 None:intergenic 50.0%
GAACTCGTCGGCCAAAAACC+AGG + chr8_1:66393805-66393824 Msa1208360:five_prime_UTR 55.0%
AACGAAAGAGAGACGGCGAG+AGG + chr8_1:66393907-66393926 Msa1208360:five_prime_UTR 55.0%
AGAGCGGCGGAAACGATTTC+CGG - chr8_1:66394141-66394160 None:intergenic 55.0%
CCTGCTTATCTTGACAGCCG+TGG - chr8_1:66395287-66395306 None:intergenic 55.0%
CCACGGCTGTCAAGATAAGC+AGG + chr8_1:66395284-66395303 Msa1208360:CDS 55.0%
CTTTGTGAATTCCCCCCTCC+AGG - chr8_1:66399791-66399810 None:intergenic 55.0%
CTGGAGGGGGGAATTCACAA+AGG + chr8_1:66399789-66399808 Msa1208360:three_prime_UTR 55.0%
GGAGTTCTATCTCTCCCTGC+CGG + chr8_1:66399902-66399921 Msa1208360:three_prime_UTR 55.0%
CGTCGGCCAAAAACCAGGGA+AGG + chr8_1:66393810-66393829 Msa1208360:five_prime_UTR 60.0%
CGGCCAAAAACCAGGGAAGG+AGG + chr8_1:66393813-66393832 Msa1208360:five_prime_UTR 60.0%
AACCAGGGAAGGAGGAACGC+TGG + chr8_1:66393821-66393840 Msa1208360:five_prime_UTR 60.0%
TTCCAGCGTTCCTCCTTCCC+TGG - chr8_1:66393826-66393845 None:intergenic 60.0%
AAGAGAGACGGCGAGAGGAG+AGG + chr8_1:66393912-66393931 Msa1208360:five_prime_UTR 60.0%
TTCAACGGCGACCGATGCAC+CGG + chr8_1:66394119-66394138 Msa1208360:intron 60.0%
GGAAATCGTTTCCGCCGCTC+TGG + chr8_1:66394140-66394159 Msa1208360:intron 60.0%
GGAAGCGAATTCCGGTGCGT+CGG - chr8_1:66395010-66395029 None:intergenic 60.0%
AGAGCGGCGGAAGCGAATTC+CGG - chr8_1:66395018-66395037 None:intergenic 60.0%
TCCTCCCTACTGCAGGTTGC+TGG + chr8_1:66397345-66397364 Msa1208360:three_prime_UTR 60.0%
TCCAGCAACCTGCAGTAGGG+AGG - chr8_1:66397349-66397368 None:intergenic 60.0%
CAGGTACGTGGCAAGCGAGT+TGG + chr8_1:66400297-66400316 Msa1208360:three_prime_UTR 60.0%
! AATTCCGGTGCGTCGGTCGG+CGG - chr8_1:66395003-66395022 None:intergenic 65.0%
! GCGAATTCCGGTGCGTCGGT+CGG - chr8_1:66395006-66395025 None:intergenic 65.0%
GGAATTCGCTTCCGCCGCTC+TGG + chr8_1:66395017-66395036 Msa1208360:intron 65.0%
TTCTCCGCCGACCGACGCAC+CGG + chr8_1:66394996-66395015 Msa1208360:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66393798 66400429 66393798 ID=Msa1208360;Name=Msa1208360
chr8_1 mRNA 66393798 66400429 66393798 ID=Msa1208360-mRNA-1;Parent=Msa1208360;Name=Msa1208360-mRNA-1;_AED=0.23;_eAED=0.23;_QI=167|0.57|0.75|1|0.14|0.5|8|1437|81
chr8_1 exon 66393798 66393980 66393798 ID=Msa1208360-mRNA-1:exon:21864;Parent=Msa1208360-mRNA-1
chr8_1 exon 66394581 66394620 66394581 ID=Msa1208360-mRNA-1:exon:21865;Parent=Msa1208360-mRNA-1
chr8_1 exon 66395237 66395328 66395237 ID=Msa1208360-mRNA-1:exon:21866;Parent=Msa1208360-mRNA-1
chr8_1 exon 66395759 66395823 66395759 ID=Msa1208360-mRNA-1:exon:21867;Parent=Msa1208360-mRNA-1
chr8_1 exon 66397021 66397696 66397021 ID=Msa1208360-mRNA-1:exon:21868;Parent=Msa1208360-mRNA-1
chr8_1 exon 66398906 66399026 66398906 ID=Msa1208360-mRNA-1:exon:21869;Parent=Msa1208360-mRNA-1
chr8_1 exon 66399674 66399810 66399674 ID=Msa1208360-mRNA-1:exon:21870;Parent=Msa1208360-mRNA-1
chr8_1 exon 66399894 66400429 66399894 ID=Msa1208360-mRNA-1:exon:21871;Parent=Msa1208360-mRNA-1
chr8_1 five_prime_UTR 66393798 66393964 66393798 ID=Msa1208360-mRNA-1:five_prime_utr;Parent=Msa1208360-mRNA-1
chr8_1 CDS 66393965 66393980 66393965 ID=Msa1208360-mRNA-1:cds;Parent=Msa1208360-mRNA-1
chr8_1 CDS 66394581 66394620 66394581 ID=Msa1208360-mRNA-1:cds;Parent=Msa1208360-mRNA-1
chr8_1 CDS 66395237 66395328 66395237 ID=Msa1208360-mRNA-1:cds;Parent=Msa1208360-mRNA-1
chr8_1 CDS 66395759 66395823 66395759 ID=Msa1208360-mRNA-1:cds;Parent=Msa1208360-mRNA-1
chr8_1 CDS 66397021 66397053 66397021 ID=Msa1208360-mRNA-1:cds;Parent=Msa1208360-mRNA-1
chr8_1 three_prime_UTR 66397054 66397696 66397054 ID=Msa1208360-mRNA-1:three_prime_utr;Parent=Msa1208360-mRNA-1
chr8_1 three_prime_UTR 66398906 66399026 66398906 ID=Msa1208360-mRNA-1:three_prime_utr;Parent=Msa1208360-mRNA-1
chr8_1 three_prime_UTR 66399674 66399810 66399674 ID=Msa1208360-mRNA-1:three_prime_utr;Parent=Msa1208360-mRNA-1
chr8_1 three_prime_UTR 66399894 66400429 66399894 ID=Msa1208360-mRNA-1:three_prime_utr;Parent=Msa1208360-mRNA-1
Gene Sequence

>Msa1208360

ATGAATGAAGACCAAGTTTGGAAACAAGGAAATCTTCTTCAATTTGGATATTCAAGTGTAATTACTGTTTCTTCAGACAAAGGTCTTTGTGCTGGAATCAACTCCACGGCTGTCAAGATAAGCAGGGACTTGAGCAAGTTGAATTCTGAATTCTTAGTGTTCATGAGCTTCAATTCAAATCCCTGCAATGGAGACAATTTAATTTCATACATGGCGTTGAAAGTTGCTAAGAAATTGAAGAATTAA
Protein sequence

>Msa1208360

MNEDQVWKQGNLLQFGYSSVITVSSDKGLCAGINSTAVKISRDLSKLNSEFLVFMSFNSNPCNGDNLISYMALKVAKKLKN*