AlfalfaGEDB | Msa0212090

M. sativa cultivar zhongmu-4 / Msa0212090

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026910	Msa0212090	0.801493	8.772737e-49	-8.615850e-47
Msa0036140	Msa0212090	0.821890	3.174323e-53	-8.615850e-47
Msa0043980	Msa0212090	0.805626	1.219072e-49	-8.615850e-47
Msa0045790	Msa0212090	0.806464	8.124508e-50	-8.615850e-47
Msa0046160	Msa0212090	0.806111	9.640621e-50	-8.615850e-47
Msa0083280	Msa0212090	0.813890	2.035398e-51	-8.615850e-47
Msa0084080	Msa0212090	0.834521	2.856519e-56	-8.615850e-47
Msa0095560	Msa0212090	0.814728	1.329108e-51	-8.615850e-47
Msa0100160	Msa0212090	0.810751	9.863114e-51	-8.615850e-47
Msa0159770	Msa0212090	0.818897	1.542114e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212090	MtrunA17_Chr4g0073341	62.745	51	19	0	112	162	101	151	6.98e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212090	AT2G33040.1	55.102	49	22	0	114	162	99	147	7.74e-11	61.2

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Find 111 sgRNAs with CRISPR-Local

Find 936 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATTCATAACCTGG+AGG	0.695365	2_1:-53856964	Msa0212090:three_prime_UTR
AAACTCATTCATAACCTGGA+GGG	0.592598	2_1:-53856963	Msa0212090:three_prime_UTR
AAATGTTGATCATTTCAAAG+AGG	0.573112	2_1:-53856803	Msa0212090:three_prime_UTR
AACACATGTTACAGGTACAA+AGG	0.594211	2_1:-53856857	Msa0212090:intron
AACCAGGAAAGGAGGAACGC+TGG	0.559120	2_1:-53863946	Msa0212090:CDS
AACTCATTCATAACCTGGAG+GGG	0.556820	2_1:-53856962	Msa0212090:three_prime_UTR
AACTTACTTCTCATTGAGAT+TGG	0.354150	2_1:+53860649	None:intergenic
AAGCAAATGCCTGTCGTGAT+AGG	0.326896	2_1:-53857005	Msa0212090:three_prime_UTR
AATGAAATGAATGAAGACCA+AGG	0.691600	2_1:-53863808	Msa0212090:intron
AATTCCGGTGCGTCGGTCGG+CGG	0.550616	2_1:+53862762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAATGAATGAAGACCA+AGG	-	chr2_1:53856523-53856542	Msa0212090:three_prime_UTR	30.0%
AAAAGATGAGGAAATTACCT+TGG	+	chr2_1:53856543-53856562	None:intergenic	30.0%
CAAGGAAATCTTCTTCAATT+TGG	-	chr2_1:53857158-53857177	Msa0212090:intron	30.0%
TGACATGTATTGAGAATTCT+TGG	-	chr2_1:53857654-53857673	Msa0212090:intron	30.0%
TAACTTATGTTCGAATTGTC+AGG	+	chr2_1:53858235-53858254	None:intergenic	30.0%
ACAGTCTATTAGCAAAGAAA+GGG	+	chr2_1:53858294-53858313	None:intergenic	30.0%
ACTGTCTAATGTGATTGATT+GGG	-	chr2_1:53858309-53858328	Msa0212090:intron	30.0%
ATTAAATTGTCTCCATTGCA+GGG	+	chr2_1:53858383-53858402	None:intergenic	30.0%
AATTAAATTGTCTCCATTGC+AGG	+	chr2_1:53858384-53858403	None:intergenic	30.0%
TAGAAAATAAACATGGTGCA+GGG	+	chr2_1:53858447-53858466	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	53856330	53864023	53856330	ID=Msa0212090;Name=Msa0212090
chr2_1	mRNA	53856330	53864023	53856330	ID=Msa0212090-mRNA-1;Parent=Msa0212090;Name=Msa0212090-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0.5\|0.36\|0.90\|0.9\|0.90\|11\|1382\|222
chr2_1	exon	53856330	53856865	53856330	ID=Msa0212090-mRNA-1:exon:14966;Parent=Msa0212090-mRNA-1
chr2_1	exon	53856949	53857093	53856949	ID=Msa0212090-mRNA-1:exon:14965;Parent=Msa0212090-mRNA-1
chr2_1	exon	53857733	53857853	53857733	ID=Msa0212090-mRNA-1:exon:14964;Parent=Msa0212090-mRNA-1
chr2_1	exon	53860072	53860747	53860072	ID=Msa0212090-mRNA-1:exon:14963;Parent=Msa0212090-mRNA-1
chr2_1	exon	53862142	53862260	53862142	ID=Msa0212090-mRNA-1:exon:14962;Parent=Msa0212090-mRNA-1
chr2_1	exon	53862456	53862547	53862456	ID=Msa0212090-mRNA-1:exon:14961;Parent=Msa0212090-mRNA-1
chr2_1	exon	53862729	53862842	53862729	ID=Msa0212090-mRNA-1:exon:14960;Parent=Msa0212090-mRNA-1
chr2_1	exon	53863164	53863203	53863164	ID=Msa0212090-mRNA-1:exon:14959;Parent=Msa0212090-mRNA-1
chr2_1	exon	53863612	53863692	53863612	ID=Msa0212090-mRNA-1:exon:14958;Parent=Msa0212090-mRNA-1
chr2_1	exon	53863809	53863830	53863809	ID=Msa0212090-mRNA-1:exon:14957;Parent=Msa0212090-mRNA-1
chr2_1	exon	53863919	53864023	53863919	ID=Msa0212090-mRNA-1:exon:14956;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53863919	53864023	53863919	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53863809	53863830	53863809	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53863612	53863692	53863612	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53863164	53863203	53863164	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53862729	53862842	53862729	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53862456	53862547	53862456	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53862142	53862260	53862142	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	CDS	53860652	53860747	53860652	ID=Msa0212090-mRNA-1:cds;Parent=Msa0212090-mRNA-1
chr2_1	three_prime_UTR	53860072	53860651	53860072	ID=Msa0212090-mRNA-1:three_prime_utr;Parent=Msa0212090-mRNA-1
chr2_1	three_prime_UTR	53857733	53857853	53857733	ID=Msa0212090-mRNA-1:three_prime_utr;Parent=Msa0212090-mRNA-1
chr2_1	three_prime_UTR	53856949	53857093	53856949	ID=Msa0212090-mRNA-1:three_prime_utr;Parent=Msa0212090-mRNA-1
chr2_1	three_prime_UTR	53856330	53856865	53856330	ID=Msa0212090-mRNA-1:three_prime_utr;Parent=Msa0212090-mRNA-1

Gene Sequence

>Msa0212090

ATGAGAAAAGAGAGAGAGTACGGGAACGAGAAGAAGAAGGAACTCGTCGGCCAAAAACCAGGAAAGGAGGAACGCTGGAAGCAGAAAAGGAAAACGAGGAAAACGAATGAAATGAATGAAGACCAAGAATTTTCTTGGATCGGAGCAACTTCAACGGCGACCGACGCACCGGAAATCGTTTCCGCCGCTCTGGATTTAGAATCAGAAGTTTGGAAACAAGGAAATCTTCTTCAATTTGGATATTCAAGTTTGTTGTTTGGTTTGGTGTTGCAACGCACAAATTTTATTCTTGATCGGAGCAATTCTCCGCCGACCGACGCACCGGAATTCGCTTCCGCCGCTCTGGATTTAGAATCAGAAGGTGTAATTACTGTTTCTTCAGACAAAGGTCTTTGTGCTGGAATCAACTCCACGGCTGTCAAGATAAGCAGGGACTTGAGCAAGTTGAATTCTGGTAACGAAACTGATGCTAAATTTGTAATGTTGAAATATTTTGATGCGCATAGTGGCTGTTCTGTGGTTCTTCTGAAGATCTTTTGCATCACCAGGGACATTGTTCAACCACCACAAATGGCGTTGAGAGTTGCTAAGAAATTGAAGGATCAAACTGTGTCCGGATATTCTAATGACTCGAATCCGTTTGGTGATTCCAATCTCAATGAGAAGTAA

Protein sequence

>Msa0212090

MRKEREYGNEKKKELVGQKPGKEERWKQKRKTRKTNEMNEDQEFSWIGATSTATDAPEIVSAALDLESEVWKQGNLLQFGYSSLLFGLVLQRTNFILDRSNSPPTDAPEFASAALDLESEGVITVSSDKGLCAGINSTAVKISRDLSKLNSGNETDAKFVMLKYFDAHSGCSVVLLKIFCITRDIVQPPQMALRVAKKLKDQTVSGYSNDSNPFGDSNLNEK*