Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210240 | XP_003608957.2 | 92.721 | 577 | 12 | 1 | 1 | 577 | 1 | 547 | 0.0 | 1095 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210240 | sp|C0SVV6|CB60A_ARATH | 46.390 | 554 | 210 | 13 | 25 | 570 | 13 | 487 | 1.42e-152 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210240 | G7JNV1 | 92.721 | 577 | 12 | 1 | 1 | 577 | 1 | 547 | 0.0 | 1095 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1210240 | Msa1259270 | 0.988247 | 2.827316e-173 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210240 | MtrunA17_Chr4g0059411 | 92.721 | 577 | 12 | 1 | 1 | 577 | 1 | 547 | 0.0 | 1095 |
| Msa1210240 | MtrunA17_Chr4g0048161 | 50.418 | 359 | 170 | 6 | 4 | 356 | 15 | 371 | 6.23e-118 | 363 |
| Msa1210240 | MtrunA17_Chr2g0281171 | 36.800 | 625 | 318 | 20 | 4 | 571 | 16 | 620 | 3.85e-115 | 355 |
| Msa1210240 | MtrunA17_Chr2g0304831 | 46.648 | 358 | 182 | 5 | 4 | 353 | 11 | 367 | 1.07e-106 | 332 |
| Msa1210240 | MtrunA17_Chr4g0072691 | 48.665 | 337 | 166 | 5 | 25 | 356 | 5 | 339 | 4.22e-106 | 331 |
| Msa1210240 | MtrunA17_Chr8g0391221 | 43.968 | 373 | 191 | 7 | 1 | 359 | 1 | 369 | 7.37e-98 | 306 |
| Msa1210240 | MtrunA17_Chr8g0391211 | 42.857 | 364 | 190 | 7 | 8 | 359 | 83 | 440 | 7.29e-96 | 303 |
| Msa1210240 | MtrunA17_Chr6g0484121 | 42.897 | 359 | 190 | 9 | 9 | 356 | 14 | 368 | 1.36e-88 | 282 |
| Msa1210240 | MtrunA17_Chr6g0484131 | 42.350 | 366 | 182 | 9 | 9 | 356 | 14 | 368 | 2.74e-88 | 281 |
| Msa1210240 | MtrunA17_Chr6g0484111 | 41.504 | 359 | 195 | 9 | 9 | 356 | 14 | 368 | 5.68e-86 | 275 |
| Msa1210240 | MtrunA17_Chr7g0271691 | 40.604 | 298 | 165 | 6 | 43 | 336 | 43 | 332 | 8.03e-63 | 215 |
| Msa1210240 | MtrunA17_Chr7g0271671 | 36.721 | 305 | 182 | 9 | 35 | 333 | 51 | 350 | 1.12e-44 | 166 |
| Msa1210240 | MtrunA17_Chr7g0271681 | 35.889 | 287 | 174 | 7 | 76 | 356 | 3 | 285 | 3.88e-43 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210240 | AT5G62570.1 | 45.913 | 575 | 219 | 14 | 5 | 570 | 11 | 502 | 4.44e-156 | 457 |
| Msa1210240 | AT5G62570.2 | 46.390 | 554 | 210 | 13 | 25 | 570 | 13 | 487 | 1.45e-153 | 450 |
| Msa1210240 | AT5G62570.4 | 59.030 | 371 | 144 | 4 | 5 | 371 | 11 | 377 | 2.41e-153 | 445 |
| Msa1210240 | AT5G62570.3 | 61.348 | 282 | 105 | 2 | 5 | 286 | 11 | 288 | 4.27e-121 | 360 |
| Msa1210240 | AT5G57580.1 | 49.861 | 359 | 172 | 5 | 4 | 356 | 13 | 369 | 2.23e-118 | 365 |
| Msa1210240 | AT4G25800.1 | 51.714 | 350 | 161 | 5 | 14 | 356 | 10 | 358 | 2.70e-118 | 363 |
| Msa1210240 | AT4G25800.2 | 51.714 | 350 | 161 | 5 | 14 | 356 | 10 | 358 | 2.70e-118 | 363 |
| Msa1210240 | AT2G18750.3 | 50.145 | 345 | 161 | 6 | 18 | 356 | 32 | 371 | 1.33e-111 | 347 |
| Msa1210240 | AT2G18750.2 | 50.145 | 345 | 161 | 6 | 18 | 356 | 32 | 371 | 1.33e-111 | 347 |
| Msa1210240 | AT2G18750.1 | 50.145 | 345 | 161 | 6 | 18 | 356 | 32 | 371 | 1.33e-111 | 347 |
| Msa1210240 | AT2G24300.3 | 46.301 | 365 | 186 | 6 | 8 | 366 | 16 | 376 | 9.50e-103 | 323 |
| Msa1210240 | AT2G24300.2 | 46.301 | 365 | 186 | 6 | 8 | 366 | 12 | 372 | 1.01e-102 | 323 |
| Msa1210240 | AT4G31000.1 | 46.667 | 345 | 176 | 4 | 13 | 353 | 21 | 361 | 1.59e-101 | 318 |
| Msa1210240 | AT2G24300.1 | 46.729 | 321 | 162 | 5 | 52 | 366 | 8 | 325 | 8.40e-91 | 290 |
| Msa1210240 | AT1G73805.1 | 42.229 | 341 | 185 | 6 | 9 | 344 | 13 | 346 | 2.28e-84 | 270 |
| Msa1210240 | AT5G26920.3 | 46.984 | 315 | 155 | 6 | 23 | 333 | 25 | 331 | 6.34e-83 | 266 |
| Msa1210240 | AT5G26920.1 | 46.984 | 315 | 155 | 6 | 23 | 333 | 25 | 331 | 1.89e-81 | 266 |
| Msa1210240 | AT5G26920.2 | 46.984 | 315 | 147 | 7 | 23 | 333 | 25 | 323 | 1.53e-79 | 261 |
| Msa1210240 | AT4G31000.2 | 41.369 | 336 | 164 | 4 | 32 | 353 | 24 | 340 | 5.67e-78 | 256 |
Find 155 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | 8_1:-69047243 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | 8_1:-69051076 | None:intergenic |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | 8_1:-69050780 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | 8_1:+69049335 | Msa1210240:CDS |
| CAAGTCTGTCGGATGAAATT+TGG | 0.268317 | 8_1:+69049856 | Msa1210240:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | 8_1:-69050733 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | 8_1:+69049013 | Msa1210240:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | 8_1:+69048950 | Msa1210240:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | 8_1:-69049055 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | 8_1:-69049245 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.314313 | 8_1:+69050864 | Msa1210240:CDS |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | 8_1:-69049127 | None:intergenic |
| ATCGAGCGCCAACAAGCTTT+TGG | 0.321778 | 8_1:+69050644 | Msa1210240:CDS |
| CCCTTAGTCATAGATGTAGA+AGG | 0.351405 | 8_1:-69050984 | None:intergenic |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | 8_1:-69050620 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | 8_1:+69049336 | Msa1210240:CDS |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | 8_1:-69047242 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | 8_1:-69050630 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | 8_1:+69049266 | Msa1210240:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | 8_1:+69049101 | Msa1210240:CDS |
| ACCTTCTACATCTATGACTA+AGG | 0.387186 | 8_1:+69050983 | Msa1210240:CDS |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | 8_1:-69050578 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | 8_1:-69047561 | None:intergenic |
| GCAATCAGTTAGGAATTTGA+TGG | 0.399948 | 8_1:+69048252 | Msa1210240:CDS |
| CGGACCAAGGGCTCTAGAAT+TGG | 0.400280 | 8_1:-69048277 | None:intergenic |
| ACAGTCACTGACCTGCTAAA+AGG | 0.407516 | 8_1:-69047588 | None:intergenic |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.410899 | 8_1:+69048670 | Msa1210240:intron |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | 8_1:-69047259 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | 8_1:+69050563 | Msa1210240:CDS |
| TTGAAGAGCCAAAAGCTTGT+TGG | 0.420145 | 8_1:-69050652 | None:intergenic |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | 8_1:+69047183 | Msa1210240:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | 8_1:-69050935 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | 8_1:+69050801 | Msa1210240:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | 8_1:-69047544 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | 8_1:+69049260 | Msa1210240:CDS |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | 8_1:-69049026 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | 8_1:+69050753 | Msa1210240:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | 8_1:+69051037 | Msa1210240:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | 8_1:+69049292 | Msa1210240:CDS |
| CAAATTTCATCCGACAGACT+TGG | 0.456013 | 8_1:-69049855 | None:intergenic |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | 8_1:+69051030 | Msa1210240:CDS |
| ATTGTTAGCAGATGCTTAGT+AGG | 0.461351 | 8_1:+69051312 | Msa1210240:three_prime_UTR |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 8_1:+69048965 | Msa1210240:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | 8_1:-69047430 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | 8_1:+69051066 | Msa1210240:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | 8_1:+69049073 | Msa1210240:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.471515 | 8_1:+69051003 | Msa1210240:CDS |
| TGATGAAGTTGCAATCAGTT+AGG | 0.472038 | 8_1:+69048242 | Msa1210240:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | 8_1:+69049204 | Msa1210240:CDS |
| GACAGTAAGAATGAAGAAAG+AGG | 0.476292 | 8_1:-69047493 | None:intergenic |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | 8_1:-69050637 | None:intergenic |
| ATTTGGAGACTGGAAAAGAT+AGG | 0.479567 | 8_1:+69049873 | Msa1210240:CDS |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | 8_1:+69049031 | Msa1210240:CDS |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | 8_1:-69049978 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | 8_1:+69051071 | Msa1210240:CDS |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | 8_1:-69050718 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | 8_1:+69050729 | Msa1210240:CDS |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | 8_1:-69050577 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | 8_1:-69050679 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | 8_1:-69049180 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | 8_1:+69049239 | Msa1210240:CDS |
| AAGAATGAAGAAAGAGGAGA+AGG | 0.500129 | 8_1:-69047487 | None:intergenic |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | 8_1:-69047543 | None:intergenic |
| GTCGGATGAAATTTGGAGAC+TGG | 0.502543 | 8_1:+69049863 | Msa1210240:CDS |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | 8_1:-69050619 | None:intergenic |
| CATGTCACATATTAAAGAGT+TGG | 0.505667 | 8_1:-69050841 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | 8_1:-69048959 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | 8_1:+69049882 | Msa1210240:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | 8_1:+69050726 | Msa1210240:CDS |
| GAGAAAAGTAAGGAAATTAG+CGG | 0.510771 | 8_1:-69050435 | None:intergenic |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | 8_1:+69051181 | Msa1210240:three_prime_UTR |
| GAATGAAAATGAGAAAAGTA+AGG | 0.521708 | 8_1:-69050445 | None:intergenic |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | 8_1:+69051010 | Msa1210240:CDS |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | 8_1:+69050339 | Msa1210240:CDS |
| GGAGCCAATTCTAGAGCCCT+TGG | 0.524950 | 8_1:+69048273 | Msa1210240:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.531651 | 8_1:-69050978 | None:intergenic |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | 8_1:-69051217 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | 8_1:+69049279 | Msa1210240:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | 8_1:+69050198 | Msa1210240:intron |
| TAAGCTGTCTGAAACCGAAA+AGG | 0.536648 | 8_1:+69050395 | Msa1210240:CDS |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | 8_1:+69050777 | Msa1210240:CDS |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | 8_1:-69049087 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | 8_1:-69049176 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | 8_1:+69047517 | Msa1210240:exon |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | 8_1:+69049895 | Msa1210240:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | 8_1:-69047253 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | 8_1:+69049054 | Msa1210240:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | 8_1:+69050204 | Msa1210240:intron |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | 8_1:+69047518 | Msa1210240:exon |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | 8_1:+69050327 | Msa1210240:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | 8_1:+69049265 | Msa1210240:CDS |
| ATTTCATCCGACAGACTTGG+AGG | 0.555401 | 8_1:-69049852 | None:intergenic |
| ATATTAAAGAGTTGGAGACT+TGG | 0.555612 | 8_1:-69050833 | None:intergenic |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | 8_1:+69048974 | Msa1210240:CDS |
| AAAGAGTTGGAGACTTGGAC+TGG | 0.557082 | 8_1:-69050828 | None:intergenic |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | 8_1:+69050503 | Msa1210240:CDS |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | 8_1:+69050247 | Msa1210240:CDS |
| CAACTCTTTAATATGTGACA+TGG | 0.568440 | 8_1:+69050842 | Msa1210240:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | 8_1:+69049208 | Msa1210240:CDS |
| TTGTTAGCAGATGCTTAGTA+GGG | 0.569729 | 8_1:+69051313 | Msa1210240:three_prime_UTR |
| ACGCGAAAGAAGAGAGTGAA+AGG | 0.569927 | 8_1:-69047139 | None:intergenic |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | 8_1:+69050621 | Msa1210240:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | 8_1:+69050959 | Msa1210240:CDS |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | 8_1:+69049254 | Msa1210240:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | 8_1:+69049140 | Msa1210240:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | 8_1:+69048658 | Msa1210240:intron |
| AAAATTGAAACCAAACAACA+TGG | 0.574891 | 8_1:-69047459 | None:intergenic |
| TCATACCACTCGGCGGACCA+AGG | 0.575333 | 8_1:-69048290 | None:intergenic |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | 8_1:+69050743 | Msa1210240:CDS |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | 8_1:+69051042 | Msa1210240:CDS |
| CAAAAGAAGCAAAATCGCCT+AGG | 0.582986 | 8_1:-69050542 | None:intergenic |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | 8_1:+69050326 | Msa1210240:CDS |
| GATCTTCATCACCAAAAGCA+TGG | 0.589315 | 8_1:-69050875 | None:intergenic |
| AGAAAAGTAAGGAAATTAGC+GGG | 0.590006 | 8_1:-69050434 | None:intergenic |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | 8_1:+69049018 | Msa1210240:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | 8_1:+69050205 | Msa1210240:intron |
| AAATTGAAACCAAACAACAT+GGG | 0.593653 | 8_1:-69047458 | None:intergenic |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | 8_1:+69049267 | Msa1210240:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | 8_1:-69050729 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | 8_1:+69049072 | Msa1210240:CDS |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | 8_1:+69049051 | Msa1210240:CDS |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | 8_1:+69049245 | Msa1210240:CDS |
| CCTTCTACATCTATGACTAA+GGG | 0.600710 | 8_1:+69050984 | Msa1210240:CDS |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | 8_1:+69050223 | Msa1210240:CDS |
| AATTGAAACCAAACAACATG+GGG | 0.603661 | 8_1:-69047457 | None:intergenic |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.606678 | 8_1:-69047582 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | 8_1:-69049177 | None:intergenic |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | 8_1:+69050620 | Msa1210240:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | 8_1:-69049175 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | 8_1:+69050525 | Msa1210240:CDS |
| TTTGAGCATCAGCCTGATCG+TGG | 0.619616 | 8_1:-69050497 | None:intergenic |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | 8_1:+69050567 | Msa1210240:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | 8_1:-69049911 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | 8_1:+69049145 | Msa1210240:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | 8_1:+69049141 | Msa1210240:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | 8_1:-69047194 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | 8_1:-69050253 | None:intergenic |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | 8_1:-69050343 | None:intergenic |
| TTGGCTCTTCAAAAGACCGG+AGG | 0.639233 | 8_1:+69050663 | Msa1210240:CDS |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | 8_1:+69049845 | Msa1210240:CDS |
| TTTCATCCGACAGACTTGGA+GGG | 0.645792 | 8_1:-69049851 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | 8_1:-69051424 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.653871 | 8_1:-69049848 | None:intergenic |
| AGAGCCCTTGGTCCGCCGAG+TGG | 0.654691 | 8_1:+69048285 | Msa1210240:CDS |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | 8_1:+69050224 | Msa1210240:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | 8_1:-69048958 | None:intergenic |
| GTCACTGACCTGCTAAAAGG+AGG | 0.661563 | 8_1:-69047585 | None:intergenic |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | 8_1:-69050574 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | 8_1:-69050794 | None:intergenic |
| TGACTAAGGGAAAAGCTCAG+AGG | 0.681952 | 8_1:+69050997 | Msa1210240:CDS |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | 8_1:+69049014 | Msa1210240:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | 8_1:-69050324 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | 8_1:+69049346 | Msa1210240:CDS |
| ATTGAAACCAAACAACATGG+GGG | 0.764016 | 8_1:-69047456 | None:intergenic |
| ATAGAGTTCATACCACTCGG+CGG | 0.781351 | 8_1:-69048297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | + | chr8_1:69047754-69047773 | Msa1210240:intron | 10.0% |
| !!! | ATTTAATATTATTTGCTTTT+AGG | + | chr8_1:69048400-69048419 | Msa1210240:intron | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | + | chr8_1:69050012-69050031 | Msa1210240:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | + | chr8_1:69050115-69050134 | Msa1210240:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | + | chr8_1:69050116-69050135 | Msa1210240:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | + | chr8_1:69047753-69047772 | Msa1210240:intron | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | + | chr8_1:69047755-69047774 | Msa1210240:intron | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | + | chr8_1:69049193-69049212 | Msa1210240:CDS | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | + | chr8_1:69049194-69049213 | Msa1210240:CDS | 15.0% |
| !! | TTTGATAGAAGAAAAATTAT+GGG | + | chr8_1:69051143-69051162 | Msa1210240:three_prime_UTR | 15.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | + | chr8_1:69047699-69047718 | Msa1210240:intron | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | + | chr8_1:69047700-69047719 | Msa1210240:intron | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+AGG | + | chr8_1:69048171-69048190 | Msa1210240:intron | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | + | chr8_1:69048413-69048432 | Msa1210240:intron | 20.0% |
| !! | CCAAAAACATAATCAATATA+TGG | - | chr8_1:69048583-69048602 | None:intergenic | 20.0% |
| !!! | CCATATATTGATTATGTTTT+TGG | + | chr8_1:69048580-69048599 | Msa1210240:intron | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | - | chr8_1:69049655-69049674 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | + | chr8_1:69049656-69049675 | Msa1210240:intron | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | - | chr8_1:69049758-69049777 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | + | chr8_1:69049787-69049806 | Msa1210240:intron | 20.0% |
| !! | GTTTGATAGAAGAAAAATTA+TGG | + | chr8_1:69051142-69051161 | Msa1210240:three_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | + | chr8_1:69047321-69047340 | Msa1210240:five_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | - | chr8_1:69047433-69047452 | None:intergenic | 25.0% |
| ! | AAATTGAAACCAAACAACAT+GGG | - | chr8_1:69047461-69047480 | None:intergenic | 25.0% |
| ! | AAAATTGAAACCAAACAACA+TGG | - | chr8_1:69047462-69047481 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | + | chr8_1:69047701-69047720 | Msa1210240:intron | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | - | chr8_1:69047912-69047931 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | + | chr8_1:69047935-69047954 | Msa1210240:intron | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | + | chr8_1:69047936-69047955 | Msa1210240:intron | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+GGG | + | chr8_1:69047965-69047984 | Msa1210240:intron | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | + | chr8_1:69047997-69048016 | Msa1210240:intron | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | - | chr8_1:69048160-69048179 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | + | chr8_1:69048210-69048229 | Msa1210240:intron | 25.0% |
| ! | CATAATCAATATATGGTATC+AGG | - | chr8_1:69048576-69048595 | None:intergenic | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | - | chr8_1:69048629-69048648 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | + | chr8_1:69048809-69048828 | Msa1210240:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | + | chr8_1:69048864-69048883 | Msa1210240:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | - | chr8_1:69049130-69049149 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | - | chr8_1:69049183-69049202 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | + | chr8_1:69049335-69049354 | Msa1210240:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | + | chr8_1:69049336-69049355 | Msa1210240:CDS | 25.0% |
| !!! | ACATGTGCTAATATTTTTTC+TGG | + | chr8_1:69049392-69049411 | Msa1210240:intron | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | + | chr8_1:69049498-69049517 | Msa1210240:intron | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | + | chr8_1:69049704-69049723 | Msa1210240:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | + | chr8_1:69049729-69049748 | Msa1210240:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | + | chr8_1:69050143-69050162 | Msa1210240:intron | 25.0% |
| ! | GAATGAAAATGAGAAAAGTA+AGG | - | chr8_1:69050448-69050467 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | + | chr8_1:69050485-69050504 | Msa1210240:CDS | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | - | chr8_1:69050938-69050957 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | + | chr8_1:69051066-69051085 | Msa1210240:CDS | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | - | chr8_1:69051079-69051098 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | - | chr8_1:69051124-69051143 | None:intergenic | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | + | chr8_1:69051277-69051296 | Msa1210240:three_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | + | chr8_1:69051358-69051377 | Msa1210240:three_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | - | chr8_1:69047256-69047275 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | - | chr8_1:69047262-69047281 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | + | chr8_1:69047354-69047373 | Msa1210240:five_prime_UTR | 30.0% |
| AATTGAAACCAAACAACATG+GGG | - | chr8_1:69047460-69047479 | None:intergenic | 30.0% | |
| !!! | TTGATTGTGTTTTGAGGAAA+TGG | + | chr8_1:69047659-69047678 | Msa1210240:intron | 30.0% |
| ATTGTGAAGCGAATTAATGT+TGG | + | chr8_1:69047804-69047823 | Msa1210240:intron | 30.0% | |
| TTGTGAAGCGAATTAATGTT+GGG | + | chr8_1:69047805-69047824 | Msa1210240:intron | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | + | chr8_1:69047908-69047927 | Msa1210240:intron | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | - | chr8_1:69047913-69047932 | None:intergenic | 30.0% | |
| CCAGAATAATACACAAACAA+TGG | - | chr8_1:69047967-69047986 | None:intergenic | 30.0% | |
| CCATTGTTTGTGTATTATTC+TGG | + | chr8_1:69047964-69047983 | Msa1210240:intron | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | - | chr8_1:69048144-69048163 | None:intergenic | 30.0% |
| ATAATAGAGTTCATACCACT+CGG | - | chr8_1:69048303-69048322 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | + | chr8_1:69048535-69048554 | Msa1210240:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | - | chr8_1:69048854-69048873 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | + | chr8_1:69049239-69049258 | Msa1210240:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | - | chr8_1:69049544-69049563 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | - | chr8_1:69049553-69049572 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | + | chr8_1:69049583-69049602 | Msa1210240:intron | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | + | chr8_1:69050036-69050055 | Msa1210240:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | + | chr8_1:69050180-69050199 | Msa1210240:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | + | chr8_1:69050181-69050200 | Msa1210240:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | - | chr8_1:69050412-69050431 | None:intergenic | 30.0% |
| AGAAAAGTAAGGAAATTAGC+GGG | - | chr8_1:69050437-69050456 | None:intergenic | 30.0% | |
| GAGAAAAGTAAGGAAATTAG+CGG | - | chr8_1:69050438-69050457 | None:intergenic | 30.0% | |
| !! | TTTTGCTTCTTTTGAAGATG+AGG | + | chr8_1:69050551-69050570 | Msa1210240:CDS | 30.0% |
| TTGTGTATAATTGAATCCTC+CGG | - | chr8_1:69050682-69050701 | None:intergenic | 30.0% | |
| ATATTAAAGAGTTGGAGACT+TGG | - | chr8_1:69050836-69050855 | None:intergenic | 30.0% | |
| CATGTCACATATTAAAGAGT+TGG | - | chr8_1:69050844-69050863 | None:intergenic | 30.0% | |
| CAACTCTTTAATATGTGACA+TGG | + | chr8_1:69050842-69050861 | Msa1210240:CDS | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | + | chr8_1:69051071-69051090 | Msa1210240:CDS | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | - | chr8_1:69047197-69047216 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | - | chr8_1:69047369-69047388 | None:intergenic | 35.0% | |
| ATTGAAACCAAACAACATGG+GGG | - | chr8_1:69047459-69047478 | None:intergenic | 35.0% | |
| AAGAATGAAGAAAGAGGAGA+AGG | - | chr8_1:69047490-69047509 | None:intergenic | 35.0% | |
| GACAGTAAGAATGAAGAAAG+AGG | - | chr8_1:69047496-69047515 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | - | chr8_1:69047547-69047566 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | + | chr8_1:69047653-69047672 | Msa1210240:intron | 35.0% |
| !!! | GTGTTTTGAGGAAATGGTAA+TGG | + | chr8_1:69047665-69047684 | Msa1210240:intron | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | + | chr8_1:69047710-69047729 | Msa1210240:intron | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | + | chr8_1:69047837-69047856 | Msa1210240:intron | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | + | chr8_1:69047928-69047947 | Msa1210240:intron | 35.0% | |
| ! | TGGTTTGCAACTGAAATTGT+TGG | + | chr8_1:69048017-69048036 | Msa1210240:intron | 35.0% |
| TGATGAAGTTGCAATCAGTT+AGG | + | chr8_1:69048242-69048261 | Msa1210240:CDS | 35.0% | |
| GCAATCAGTTAGGAATTTGA+TGG | + | chr8_1:69048252-69048271 | Msa1210240:CDS | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | + | chr8_1:69048538-69048557 | Msa1210240:intron | 35.0% | |
| !!! | GATTATGTTTTTGGAAGAGC+TGG | + | chr8_1:69048589-69048608 | Msa1210240:intron | 35.0% |
| !!! | GATTTTGGTTCCACTTTTAC+TGG | + | chr8_1:69048616-69048635 | Msa1210240:intron | 35.0% |
| CATATGCAACTCGATAAATG+AGG | - | chr8_1:69048766-69048785 | None:intergenic | 35.0% | |
| GTTTAGTTGACACCTTAACA+GGG | + | chr8_1:69049014-69049033 | Msa1210240:CDS | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | + | chr8_1:69049101-69049120 | Msa1210240:CDS | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | + | chr8_1:69049140-69049159 | Msa1210240:CDS | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | + | chr8_1:69049141-69049160 | Msa1210240:CDS | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | - | chr8_1:69049179-69049198 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | - | chr8_1:69049180-69049199 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | - | chr8_1:69049248-69049267 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | + | chr8_1:69049292-69049311 | Msa1210240:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | + | chr8_1:69049346-69049365 | Msa1210240:CDS | 35.0% | |
| TGGATTGACCTATTCTAACA+GGG | - | chr8_1:69049524-69049543 | None:intergenic | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | + | chr8_1:69049582-69049601 | Msa1210240:intron | 35.0% | |
| ATTTGGAGACTGGAAAAGAT+AGG | + | chr8_1:69049873-69049892 | Msa1210240:CDS | 35.0% | |
| TTGACATGTTTACCAACTTG+TGG | - | chr8_1:69050051-69050070 | None:intergenic | 35.0% | |
| GTGTGAATAACCATCCATTA+GGG | - | chr8_1:69050580-69050599 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | - | chr8_1:69050581-69050600 | None:intergenic | 35.0% | |
| GTAAATGGATGGCATGATAT+CGG | - | chr8_1:69050721-69050740 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | + | chr8_1:69050801-69050820 | Msa1210240:CDS | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | + | chr8_1:69050864-69050883 | Msa1210240:CDS | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | + | chr8_1:69050896-69050915 | Msa1210240:CDS | 35.0% |
| ACCTTCTACATCTATGACTA+AGG | + | chr8_1:69050983-69051002 | Msa1210240:CDS | 35.0% | |
| CCTTCTACATCTATGACTAA+GGG | + | chr8_1:69050984-69051003 | Msa1210240:CDS | 35.0% | |
| TACAAAAACCAATGCATGGA+GGG | - | chr8_1:69051192-69051211 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | - | chr8_1:69051196-69051215 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | + | chr8_1:69051282-69051301 | Msa1210240:three_prime_UTR | 35.0% |
| ATTGTTAGCAGATGCTTAGT+AGG | + | chr8_1:69051312-69051331 | Msa1210240:three_prime_UTR | 35.0% | |
| TTGTTAGCAGATGCTTAGTA+GGG | + | chr8_1:69051313-69051332 | Msa1210240:three_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | + | chr8_1:69047183-69047202 | Msa1210240:five_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | - | chr8_1:69047245-69047264 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | - | chr8_1:69047246-69047265 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | - | chr8_1:69047546-69047565 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | - | chr8_1:69047564-69047583 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | + | chr8_1:69047866-69047885 | Msa1210240:intron | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | - | chr8_1:69047871-69047890 | None:intergenic | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | - | chr8_1:69048083-69048102 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | - | chr8_1:69048506-69048525 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | - | chr8_1:69048550-69048569 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | + | chr8_1:69048550-69048569 | Msa1210240:intron | 40.0% |
| !!! | TGTTTTTGGAAGAGCTGGTT+TGG | + | chr8_1:69048594-69048613 | Msa1210240:intron | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | + | chr8_1:69048649-69048668 | Msa1210240:intron | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | + | chr8_1:69048670-69048689 | Msa1210240:intron | 40.0% | |
| ! | TCGAGTTGCATATGAAGCAA+AGG | + | chr8_1:69048772-69048791 | Msa1210240:intron | 40.0% |
| CGAGTTGCATATGAAGCAAA+GGG | + | chr8_1:69048773-69048792 | Msa1210240:intron | 40.0% | |
| TGCATATGAAGCAAAGGGAA+TGG | + | chr8_1:69048778-69048797 | Msa1210240:intron | 40.0% | |
| ! | TGAAGCAAAGGGAATGGATT+AGG | + | chr8_1:69048784-69048803 | Msa1210240:intron | 40.0% |
| !! | GAAGCAAAGGGAATGGATTA+GGG | + | chr8_1:69048785-69048804 | Msa1210240:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | + | chr8_1:69048872-69048891 | Msa1210240:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | + | chr8_1:69048877-69048896 | Msa1210240:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | + | chr8_1:69048950-69048969 | Msa1210240:CDS | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | + | chr8_1:69048965-69048984 | Msa1210240:CDS | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | + | chr8_1:69049013-69049032 | Msa1210240:CDS | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | - | chr8_1:69049029-69049048 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | + | chr8_1:69049073-69049092 | Msa1210240:CDS | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | + | chr8_1:69049145-69049164 | Msa1210240:CDS | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | - | chr8_1:69049178-69049197 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | + | chr8_1:69049204-69049223 | Msa1210240:CDS | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | + | chr8_1:69049245-69049264 | Msa1210240:CDS | 40.0% |
| ! | GTGGATTGACCTATTCTAAC+AGG | - | chr8_1:69049525-69049544 | None:intergenic | 40.0% |
| CAAATTTCATCCGACAGACT+TGG | - | chr8_1:69049858-69049877 | None:intergenic | 40.0% | |
| CAAGTCTGTCGGATGAAATT+TGG | + | chr8_1:69049856-69049875 | Msa1210240:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | + | chr8_1:69049882-69049901 | Msa1210240:CDS | 40.0% | |
| ! | TACTAGTTGGCTTCTCTCTA+TGG | + | chr8_1:69050156-69050175 | Msa1210240:intron | 40.0% |
| CTTGGGAATGTGTAGATACT+GGG | + | chr8_1:69050198-69050217 | Msa1210240:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | + | chr8_1:69050395-69050414 | Msa1210240:CDS | 40.0% |
| CAAAAGAAGCAAAATCGCCT+AGG | - | chr8_1:69050545-69050564 | None:intergenic | 40.0% | |
| TGAATAACCATCCATTAGGG+AGG | - | chr8_1:69050577-69050596 | None:intergenic | 40.0% | |
| TTGAAGAGCCAAAAGCTTGT+TGG | - | chr8_1:69050655-69050674 | None:intergenic | 40.0% | |
| !!! | CTTTTGGCTCTTCAAAAGAC+CGG | + | chr8_1:69050660-69050679 | Msa1210240:CDS | 40.0% |
| ATGCCATCCATTTACTCAGT+TGG | + | chr8_1:69050726-69050745 | Msa1210240:CDS | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | - | chr8_1:69050736-69050755 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | + | chr8_1:69050777-69050796 | Msa1210240:CDS | 40.0% | |
| GATCTTCATCACCAAAAGCA+TGG | - | chr8_1:69050878-69050897 | None:intergenic | 40.0% | |
| CCCTTAGTCATAGATGTAGA+AGG | - | chr8_1:69050987-69051006 | None:intergenic | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | + | chr8_1:69051030-69051049 | Msa1210240:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | + | chr8_1:69051037-69051056 | Msa1210240:CDS | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | + | chr8_1:69051042-69051061 | Msa1210240:CDS | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | + | chr8_1:69051181-69051200 | Msa1210240:three_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | - | chr8_1:69051193-69051212 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | - | chr8_1:69051220-69051239 | None:intergenic | 40.0% | |
| ACGCGAAAGAAGAGAGTGAA+AGG | - | chr8_1:69047142-69047161 | None:intergenic | 45.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | + | chr8_1:69047518-69047537 | Msa1210240:exon | 45.0% | |
| ACAGTCACTGACCTGCTAAA+AGG | - | chr8_1:69047591-69047610 | None:intergenic | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | + | chr8_1:69047865-69047884 | Msa1210240:intron | 45.0% | |
| ATAGAGTTCATACCACTCGG+CGG | - | chr8_1:69048300-69048319 | None:intergenic | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | + | chr8_1:69048493-69048512 | Msa1210240:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | + | chr8_1:69048494-69048513 | Msa1210240:intron | 45.0% | |
| !!! | GGAAGAGCTGGTTTGGATTT+TGG | + | chr8_1:69048601-69048620 | Msa1210240:intron | 45.0% |
| GACTTCTTTGCAGGTTAGAG+AGG | + | chr8_1:69048658-69048677 | Msa1210240:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | - | chr8_1:69048961-69048980 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | - | chr8_1:69048962-69048981 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | + | chr8_1:69048974-69048993 | Msa1210240:CDS | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | + | chr8_1:69049018-69049037 | Msa1210240:CDS | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | + | chr8_1:69049031-69049050 | Msa1210240:CDS | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | + | chr8_1:69049051-69049070 | Msa1210240:CDS | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | + | chr8_1:69049054-69049073 | Msa1210240:CDS | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | - | chr8_1:69049058-69049077 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | + | chr8_1:69049072-69049091 | Msa1210240:CDS | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | - | chr8_1:69049090-69049109 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | + | chr8_1:69049208-69049227 | Msa1210240:CDS | 45.0% |
| GAGTAAGGCCCTGTTAGAAT+AGG | + | chr8_1:69049513-69049532 | Msa1210240:intron | 45.0% | |
| TTTCATCCGACAGACTTGGA+GGG | - | chr8_1:69049854-69049873 | None:intergenic | 45.0% | |
| ATTTCATCCGACAGACTTGG+AGG | - | chr8_1:69049855-69049874 | None:intergenic | 45.0% | |
| GTCGGATGAAATTTGGAGAC+TGG | + | chr8_1:69049863-69049882 | Msa1210240:CDS | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | + | chr8_1:69050197-69050216 | Msa1210240:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | + | chr8_1:69050204-69050223 | Msa1210240:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | + | chr8_1:69050205-69050224 | Msa1210240:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | + | chr8_1:69050224-69050243 | Msa1210240:CDS | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | + | chr8_1:69050247-69050266 | Msa1210240:CDS | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | + | chr8_1:69050503-69050522 | Msa1210240:CDS | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | + | chr8_1:69050525-69050544 | Msa1210240:CDS | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | - | chr8_1:69050732-69050751 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | + | chr8_1:69050729-69050748 | Msa1210240:CDS | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | + | chr8_1:69050743-69050762 | Msa1210240:CDS | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | + | chr8_1:69050753-69050772 | Msa1210240:CDS | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | - | chr8_1:69050783-69050802 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | - | chr8_1:69050797-69050816 | None:intergenic | 45.0% | |
| AAAGAGTTGGAGACTTGGAC+TGG | - | chr8_1:69050831-69050850 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | + | chr8_1:69050959-69050978 | Msa1210240:CDS | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | - | chr8_1:69050981-69051000 | None:intergenic | 45.0% |
| TGACTAAGGGAAAAGCTCAG+AGG | + | chr8_1:69050997-69051016 | Msa1210240:CDS | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | + | chr8_1:69051201-69051220 | Msa1210240:three_prime_UTR | 45.0% |
| !!! | ATAGTTTTATTATTATATAT+TGG | + | chr8_1:69047386-69047405 | Msa1210240:five_prime_UTR | 5.0% |
| GTCTACACCCCCATGTTGTT+TGG | + | chr8_1:69047449-69047468 | Msa1210240:five_prime_UTR | 50.0% | |
| CTTCGACTATGTCGCTCAAG+AGG | + | chr8_1:69047517-69047536 | Msa1210240:exon | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | + | chr8_1:69047519-69047538 | Msa1210240:exon | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | + | chr8_1:69047577-69047596 | Msa1210240:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | - | chr8_1:69047585-69047604 | None:intergenic | 50.0% | |
| GTCACTGACCTGCTAAAAGG+AGG | - | chr8_1:69047588-69047607 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | + | chr8_1:69047851-69047870 | Msa1210240:intron | 50.0% | |
| TTACAGCCCACAAAGCATGG+TGG | - | chr8_1:69048503-69048522 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | + | chr8_1:69049166-69049185 | Msa1210240:CDS | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | + | chr8_1:69049254-69049273 | Msa1210240:CDS | 50.0% |
| GCAAAGATGGAGCTTTCCAC+AGG | + | chr8_1:69049895-69049914 | Msa1210240:CDS | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | - | chr8_1:69049914-69049933 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | + | chr8_1:69050223-69050242 | Msa1210240:CDS | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | - | chr8_1:69050256-69050275 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | - | chr8_1:69050327-69050346 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | + | chr8_1:69050326-69050345 | Msa1210240:CDS | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | + | chr8_1:69050327-69050346 | Msa1210240:CDS | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | - | chr8_1:69050500-69050519 | None:intergenic | 50.0% | |
| TGAAGATGAGGCCTCCCTAA+TGG | + | chr8_1:69050563-69050582 | Msa1210240:CDS | 50.0% | |
| ! | ATCGAGCGCCAACAAGCTTT+TGG | + | chr8_1:69050644-69050663 | Msa1210240:CDS | 50.0% |
| ! | TTGGCTCTTCAAAAGACCGG+AGG | + | chr8_1:69050663-69050682 | Msa1210240:CDS | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | + | chr8_1:69051003-69051022 | Msa1210240:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | + | chr8_1:69051010-69051029 | Msa1210240:CDS | 50.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | + | chr8_1:69047850-69047869 | Msa1210240:intron | 55.0% | |
| !! | GGAGCCAATTCTAGAGCCCT+TGG | + | chr8_1:69048273-69048292 | Msa1210240:CDS | 55.0% |
| !! | CGGACCAAGGGCTCTAGAAT+TGG | - | chr8_1:69048280-69048299 | None:intergenic | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | + | chr8_1:69049260-69049279 | Msa1210240:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | + | chr8_1:69049265-69049284 | Msa1210240:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | + | chr8_1:69049266-69049285 | Msa1210240:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | + | chr8_1:69049267-69049286 | Msa1210240:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | + | chr8_1:69049845-69049864 | Msa1210240:CDS | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | - | chr8_1:69049981-69050000 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | + | chr8_1:69050339-69050358 | Msa1210240:CDS | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | - | chr8_1:69050346-69050365 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | + | chr8_1:69050567-69050586 | Msa1210240:CDS | 55.0% | |
| CATACCACTCGGCGGACCAA+GGG | - | chr8_1:69048292-69048311 | None:intergenic | 60.0% | |
| TCATACCACTCGGCGGACCA+AGG | - | chr8_1:69048293-69048312 | None:intergenic | 60.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | + | chr8_1:69049279-69049298 | Msa1210240:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | - | chr8_1:69049851-69049870 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | - | chr8_1:69050622-69050641 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | - | chr8_1:69050623-69050642 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | + | chr8_1:69050621-69050640 | Msa1210240:CDS | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | - | chr8_1:69050640-69050659 | None:intergenic | 60.0% | |
| CCCAAGCTCTCCGAGAACCG+AGG | + | chr8_1:69050620-69050639 | Msa1210240:CDS | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | - | chr8_1:69050624-69050643 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | - | chr8_1:69050633-69050652 | None:intergenic | 65.0% | |
| AGAGCCCTTGGTCCGCCGAG+TGG | + | chr8_1:69048285-69048304 | Msa1210240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 69047136 | 69051439 | 69047136 | ID=Msa1210240;Name=Msa1210240 |
| chr8_1 | mRNA | 69047136 | 69051439 | 69047136 | ID=Msa1210240-mRNA-1;Parent=Msa1210240;Name=Msa1210240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=389|1|1|1|1|1|6|348|577 |
| chr8_1 | exon | 69047136 | 69047598 | 69047136 | ID=Msa1210240-mRNA-1:exon:23068;Parent=Msa1210240-mRNA-1 |
| chr8_1 | exon | 69048228 | 69048306 | 69048228 | ID=Msa1210240-mRNA-1:exon:23069;Parent=Msa1210240-mRNA-1 |
| chr8_1 | exon | 69048671 | 69048723 | 69048671 | ID=Msa1210240-mRNA-1:exon:23070;Parent=Msa1210240-mRNA-1 |
| chr8_1 | exon | 69048886 | 69049373 | 69048886 | ID=Msa1210240-mRNA-1:exon:23071;Parent=Msa1210240-mRNA-1 |
| chr8_1 | exon | 69049835 | 69049995 | 69049835 | ID=Msa1210240-mRNA-1:exon:23072;Parent=Msa1210240-mRNA-1 |
| chr8_1 | exon | 69050213 | 69051439 | 69050213 | ID=Msa1210240-mRNA-1:exon:23073;Parent=Msa1210240-mRNA-1 |
| chr8_1 | five_prime_UTR | 69047136 | 69047524 | 69047136 | ID=Msa1210240-mRNA-1:five_prime_utr;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69047525 | 69047598 | 69047525 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69048228 | 69048306 | 69048228 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69048671 | 69048723 | 69048671 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69048886 | 69049373 | 69048886 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69049835 | 69049995 | 69049835 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | CDS | 69050213 | 69051091 | 69050213 | ID=Msa1210240-mRNA-1:cds;Parent=Msa1210240-mRNA-1 |
| chr8_1 | three_prime_UTR | 69051092 | 69051439 | 69051092 | ID=Msa1210240-mRNA-1:three_prime_utr;Parent=Msa1210240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
