Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259270 | XP_003608957.2 | 96.161 | 547 | 12 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1086 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259270 | sp|C0SVV6|CB60A_ARATH | 47.901 | 524 | 207 | 13 | 25 | 531 | 13 | 487 | 2.37e-152 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259270 | G7JNV1 | 96.161 | 547 | 12 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1086 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714990 | Msa1259270 | 0.807442 | 5.045655e-50 | -8.615850e-47 |
| Msa0757020 | Msa1259270 | 0.806160 | 9.415879e-50 | -8.615850e-47 |
| Msa0836650 | Msa1259270 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
| Msa0429090 | Msa1259270 | 0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0475500 | Msa1259270 | 0.800836 | 1.195646e-48 | -8.615850e-47 |
| Msa1210240 | Msa1259270 | 0.988247 | 2.827316e-173 | -8.615850e-47 |
| Msa0961360 | Msa1259270 | 0.800438 | 1.441302e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259270 | MtrunA17_Chr4g0059411 | 96.161 | 547 | 12 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1086 |
| Msa1259270 | MtrunA17_Chr4g0048161 | 50.857 | 350 | 164 | 6 | 4 | 347 | 15 | 362 | 3.31e-115 | 354 |
| Msa1259270 | MtrunA17_Chr2g0281171 | 49.573 | 351 | 167 | 6 | 4 | 347 | 16 | 363 | 9.46e-112 | 345 |
| Msa1259270 | MtrunA17_Chr2g0304831 | 46.761 | 355 | 180 | 5 | 4 | 350 | 11 | 364 | 1.03e-105 | 328 |
| Msa1259270 | MtrunA17_Chr4g0072691 | 49.390 | 328 | 159 | 5 | 25 | 347 | 5 | 330 | 5.78e-104 | 325 |
| Msa1259270 | MtrunA17_Chr8g0391221 | 48.476 | 328 | 154 | 6 | 1 | 314 | 1 | 327 | 9.73e-98 | 304 |
| Msa1259270 | MtrunA17_Chr8g0391211 | 47.335 | 319 | 153 | 6 | 8 | 314 | 83 | 398 | 1.28e-95 | 301 |
| Msa1259270 | MtrunA17_Chr6g0484121 | 47.727 | 308 | 150 | 7 | 9 | 306 | 14 | 320 | 2.45e-88 | 280 |
| Msa1259270 | MtrunA17_Chr6g0484131 | 46.984 | 315 | 142 | 7 | 9 | 306 | 14 | 320 | 3.13e-88 | 280 |
| Msa1259270 | MtrunA17_Chr6g0484111 | 46.429 | 308 | 154 | 7 | 9 | 306 | 14 | 320 | 2.08e-86 | 275 |
| Msa1259270 | MtrunA17_Chr7g0271691 | 40.604 | 298 | 165 | 6 | 43 | 336 | 43 | 332 | 2.62e-63 | 216 |
| Msa1259270 | MtrunA17_Chr7g0271671 | 36.721 | 305 | 182 | 9 | 35 | 333 | 51 | 350 | 6.63e-45 | 166 |
| Msa1259270 | MtrunA17_Chr7g0271681 | 36.462 | 277 | 168 | 6 | 76 | 348 | 3 | 275 | 6.69e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1259270 | AT5G62570.1 | 47.339 | 545 | 216 | 14 | 5 | 531 | 11 | 502 | 5.67e-156 | 455 |
| Msa1259270 | AT5G62570.2 | 47.901 | 524 | 207 | 13 | 25 | 531 | 13 | 487 | 2.41e-153 | 448 |
| Msa1259270 | AT5G62570.4 | 59.040 | 354 | 140 | 3 | 5 | 357 | 11 | 360 | 1.98e-148 | 431 |
| Msa1259270 | AT5G62570.3 | 61.348 | 282 | 105 | 2 | 5 | 286 | 11 | 288 | 1.62e-121 | 359 |
| Msa1259270 | AT5G57580.1 | 50.857 | 350 | 164 | 5 | 4 | 347 | 13 | 360 | 1.47e-116 | 358 |
| Msa1259270 | AT4G25800.1 | 52.199 | 341 | 155 | 5 | 14 | 347 | 10 | 349 | 1.03e-115 | 355 |
| Msa1259270 | AT4G25800.2 | 52.199 | 341 | 155 | 5 | 14 | 347 | 10 | 349 | 1.03e-115 | 355 |
| Msa1259270 | AT2G18750.3 | 47.074 | 393 | 181 | 10 | 18 | 388 | 32 | 419 | 6.97e-110 | 341 |
| Msa1259270 | AT2G18750.2 | 47.074 | 393 | 181 | 10 | 18 | 388 | 32 | 419 | 6.97e-110 | 341 |
| Msa1259270 | AT2G18750.1 | 47.074 | 393 | 181 | 10 | 18 | 388 | 32 | 419 | 6.97e-110 | 341 |
| Msa1259270 | AT4G31000.1 | 46.903 | 339 | 172 | 4 | 13 | 347 | 21 | 355 | 2.07e-101 | 317 |
| Msa1259270 | AT2G24300.2 | 47.110 | 346 | 175 | 5 | 8 | 347 | 12 | 355 | 2.28e-101 | 318 |
| Msa1259270 | AT2G24300.3 | 47.110 | 346 | 175 | 5 | 8 | 347 | 16 | 359 | 2.40e-101 | 318 |
| Msa1259270 | AT2G24300.1 | 47.682 | 302 | 151 | 4 | 52 | 347 | 8 | 308 | 4.59e-89 | 285 |
| Msa1259270 | AT1G73805.1 | 41.243 | 354 | 196 | 6 | 9 | 357 | 13 | 359 | 3.31e-85 | 271 |
| Msa1259270 | AT5G26920.3 | 46.984 | 315 | 155 | 6 | 23 | 333 | 25 | 331 | 2.91e-83 | 265 |
| Msa1259270 | AT5G26920.1 | 46.984 | 315 | 155 | 6 | 23 | 333 | 25 | 331 | 5.97e-82 | 266 |
| Msa1259270 | AT5G26920.2 | 46.984 | 315 | 147 | 7 | 23 | 333 | 25 | 323 | 6.60e-80 | 261 |
| Msa1259270 | AT4G31000.2 | 41.515 | 330 | 160 | 4 | 32 | 347 | 24 | 334 | 1.19e-77 | 254 |
Find 150 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | 8_2:+60834590 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | 8_2:+60830750 | None:intergenic |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | 8_2:+60831046 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | 8_2:-60832493 | Msa1259270:CDS |
| CAAGTCTGTCGGATGAAATT+TGG | 0.268317 | 8_2:-60831972 | Msa1259270:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | 8_2:+60831093 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | 8_2:-60832815 | Msa1259270:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | 8_2:-60832878 | Msa1259270:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | 8_2:+60832773 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | 8_2:+60832583 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.314313 | 8_2:-60830962 | Msa1259270:CDS |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | 8_2:+60832701 | None:intergenic |
| ATCGAGCGCCAACAAGCTTT+TGG | 0.321778 | 8_2:-60831182 | Msa1259270:CDS |
| CCCTTAGTCATAGATGTAGA+AGG | 0.351405 | 8_2:+60830842 | None:intergenic |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | 8_2:+60831206 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | 8_2:-60832492 | Msa1259270:CDS |
| ACACCCACTGACCTGCTAAA+AGG | 0.368657 | 8_2:+60834245 | None:intergenic |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | 8_2:+60834591 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | 8_2:+60831196 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | 8_2:-60832562 | Msa1259270:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | 8_2:-60832727 | Msa1259270:CDS |
| ACCTTCTACATCTATGACTA+AGG | 0.387186 | 8_2:-60830843 | Msa1259270:CDS |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | 8_2:+60831248 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | 8_2:+60834272 | None:intergenic |
| GCAATCAGTTAGGAATTTGA+TGG | 0.399948 | 8_2:-60833576 | Msa1259270:CDS |
| CGGACCAAGGGCTCTAGAAT+TGG | 0.400280 | 8_2:+60833551 | None:intergenic |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.410899 | 8_2:-60833158 | Msa1259270:CDS |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | 8_2:+60834574 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | 8_2:-60831263 | Msa1259270:CDS |
| TTGAAGAGCCAAAAGCTTGT+TGG | 0.420145 | 8_2:+60831174 | None:intergenic |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | 8_2:-60834650 | Msa1259270:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | 8_2:+60830891 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | 8_2:-60831025 | Msa1259270:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | 8_2:+60834289 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | 8_2:-60832568 | Msa1259270:CDS |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | 8_2:+60832802 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | 8_2:-60831073 | Msa1259270:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | 8_2:-60830789 | Msa1259270:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | 8_2:-60832536 | Msa1259270:CDS |
| CAAATTTCATCCGACAGACT+TGG | 0.456013 | 8_2:+60831973 | None:intergenic |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | 8_2:-60830796 | Msa1259270:CDS |
| ATTGTTAGCAGATGCTTAGT+AGG | 0.461351 | 8_2:-60830514 | Msa1259270:three_prime_UTR |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 8_2:-60832863 | Msa1259270:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | 8_2:+60834403 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | 8_2:-60830760 | Msa1259270:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | 8_2:-60832755 | Msa1259270:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.471515 | 8_2:-60830823 | Msa1259270:CDS |
| TGATGAAGTTGCAATCAGTT+AGG | 0.472038 | 8_2:-60833586 | Msa1259270:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | 8_2:-60832624 | Msa1259270:CDS |
| GACAGTAAGAATGAAGAAAG+AGG | 0.476292 | 8_2:+60834340 | None:intergenic |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | 8_2:+60831189 | None:intergenic |
| ATTTGGAGACTGGAAAAGAT+AGG | 0.479567 | 8_2:-60831955 | Msa1259270:CDS |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | 8_2:-60832797 | Msa1259270:CDS |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | 8_2:+60831850 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | 8_2:-60830755 | Msa1259270:exon |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | 8_2:+60831108 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | 8_2:-60831097 | Msa1259270:CDS |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | 8_2:+60831249 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | 8_2:+60831147 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | 8_2:+60832648 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | 8_2:-60832589 | Msa1259270:CDS |
| AAGAATGAAGAAAGAGGAGA+AGG | 0.500129 | 8_2:+60834346 | None:intergenic |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | 8_2:+60834290 | None:intergenic |
| GTCGGATGAAATTTGGAGAC+TGG | 0.502543 | 8_2:-60831965 | Msa1259270:CDS |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | 8_2:+60831207 | None:intergenic |
| CATGTCACATATTAAAGAGT+TGG | 0.505667 | 8_2:+60830985 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | 8_2:+60832869 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | 8_2:-60831946 | Msa1259270:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | 8_2:-60831100 | Msa1259270:CDS |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | 8_2:-60830645 | Msa1259270:three_prime_UTR |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | 8_2:-60830816 | Msa1259270:CDS |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | 8_2:-60831489 | Msa1259270:CDS |
| GGAGCCAATTCTAGAGCCCT+TGG | 0.524950 | 8_2:-60833555 | Msa1259270:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.531651 | 8_2:+60830848 | None:intergenic |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | 8_2:+60830609 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | 8_2:-60832549 | Msa1259270:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | 8_2:-60831630 | Msa1259270:intron |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | 8_2:-60831049 | Msa1259270:CDS |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | 8_2:+60832741 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | 8_2:+60832652 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | 8_2:-60834316 | Msa1259270:exon |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | 8_2:-60831933 | Msa1259270:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | 8_2:+60834580 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | 8_2:-60832774 | Msa1259270:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | 8_2:-60831624 | Msa1259270:intron |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | 8_2:-60834315 | Msa1259270:exon |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | 8_2:-60831501 | Msa1259270:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | 8_2:-60832563 | Msa1259270:CDS |
| ATTTCATCCGACAGACTTGG+AGG | 0.555401 | 8_2:+60831976 | None:intergenic |
| ATATTAAAGAGTTGGAGACT+TGG | 0.555612 | 8_2:+60830993 | None:intergenic |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | 8_2:-60832854 | Msa1259270:CDS |
| AAAGAGTTGGAGACTTGGAC+TGG | 0.557082 | 8_2:+60830998 | None:intergenic |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | 8_2:-60831323 | Msa1259270:intron |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | 8_2:-60831581 | Msa1259270:CDS |
| CAACTCTTTAATATGTGACA+TGG | 0.568440 | 8_2:-60830984 | Msa1259270:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | 8_2:-60832620 | Msa1259270:CDS |
| TTGTTAGCAGATGCTTAGTA+GGG | 0.569729 | 8_2:-60830513 | Msa1259270:three_prime_UTR |
| ACGCGAAAGAAGAGAGTGAA+AGG | 0.569927 | 8_2:+60834694 | None:intergenic |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | 8_2:-60831205 | Msa1259270:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | 8_2:-60830867 | Msa1259270:CDS |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | 8_2:-60832574 | Msa1259270:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | 8_2:-60832688 | Msa1259270:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | 8_2:-60833170 | Msa1259270:intron |
| AAAATTGAAACCAAACAACA+TGG | 0.574891 | 8_2:+60834374 | None:intergenic |
| TCATACCACTCGGCGGACCA+AGG | 0.575333 | 8_2:+60833538 | None:intergenic |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | 8_2:-60831083 | Msa1259270:CDS |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | 8_2:-60830784 | Msa1259270:CDS |
| CAAAAGAAGCAAAATCGCCT+AGG | 0.582986 | 8_2:+60831284 | None:intergenic |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | 8_2:-60831502 | Msa1259270:CDS |
| GATCTTCATCACCAAAAGCA+TGG | 0.589315 | 8_2:+60830951 | None:intergenic |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | 8_2:-60832810 | Msa1259270:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | 8_2:-60831623 | Msa1259270:intron |
| AAATTGAAACCAAACAACAT+GGG | 0.593653 | 8_2:+60834375 | None:intergenic |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | 8_2:-60832561 | Msa1259270:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | 8_2:+60831097 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | 8_2:-60832756 | Msa1259270:CDS |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | 8_2:-60832777 | Msa1259270:CDS |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | 8_2:-60832583 | Msa1259270:CDS |
| CCTTCTACATCTATGACTAA+GGG | 0.600710 | 8_2:-60830842 | Msa1259270:CDS |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | 8_2:-60831605 | Msa1259270:CDS |
| AATTGAAACCAAACAACATG+GGG | 0.603661 | 8_2:+60834376 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | 8_2:+60832651 | None:intergenic |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | 8_2:-60831206 | Msa1259270:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | 8_2:+60832653 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | 8_2:-60831301 | Msa1259270:CDS |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | 8_2:-60831259 | Msa1259270:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | 8_2:+60831917 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | 8_2:-60832683 | Msa1259270:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | 8_2:-60832687 | Msa1259270:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | 8_2:+60834639 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | 8_2:+60831575 | None:intergenic |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.629231 | 8_2:+60834251 | None:intergenic |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | 8_2:+60831485 | None:intergenic |
| TTGGCTCTTCAAAAGACCGG+AGG | 0.639233 | 8_2:-60831163 | Msa1259270:CDS |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | 8_2:-60831983 | Msa1259270:CDS |
| TTTCATCCGACAGACTTGGA+GGG | 0.645792 | 8_2:+60831977 | None:intergenic |
| CCCACTGACCTGCTAAAAGG+AGG | 0.648847 | 8_2:+60834248 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | 8_2:+60830402 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.653871 | 8_2:+60831980 | None:intergenic |
| AGAGCCCTTGGTCCGCCGAG+TGG | 0.654691 | 8_2:-60833543 | Msa1259270:intron |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | 8_2:-60831604 | Msa1259270:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | 8_2:+60832870 | None:intergenic |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | 8_2:+60831252 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | 8_2:+60831032 | None:intergenic |
| TGACTAAGGGAAAAGCTCAG+AGG | 0.681952 | 8_2:-60830829 | Msa1259270:CDS |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | 8_2:-60832814 | Msa1259270:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | 8_2:+60831504 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | 8_2:-60832482 | Msa1259270:CDS |
| ATTGAAACCAAACAACATGG+GGG | 0.764016 | 8_2:+60834377 | None:intergenic |
| ATAGAGTTCATACCACTCGG+CGG | 0.781351 | 8_2:+60833531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | - | chr8_2:60831030-60831049 | Msa1259270:CDS | 10.0% |
| !!! | ATTTAATATTATTTGCTTTT+AGG | - | chr8_2:60831678-60831697 | Msa1259270:intron | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | - | chr8_2:60833290-60833309 | Msa1259270:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | - | chr8_2:60833393-60833412 | Msa1259270:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | - | chr8_2:60833394-60833413 | Msa1259270:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | - | chr8_2:60831029-60831048 | Msa1259270:CDS | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | - | chr8_2:60831031-60831050 | Msa1259270:CDS | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | - | chr8_2:60832471-60832490 | Msa1259270:intron | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | - | chr8_2:60832472-60832491 | Msa1259270:intron | 15.0% |
| !! | TTTGATAGAAGAAAAATTAT+GGG | - | chr8_2:60834423-60834442 | Msa1259270:five_prime_UTR | 15.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | - | chr8_2:60830975-60830994 | Msa1259270:CDS | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | - | chr8_2:60830976-60830995 | Msa1259270:CDS | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+AGG | - | chr8_2:60831449-60831468 | Msa1259270:intron | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | - | chr8_2:60831691-60831710 | Msa1259270:intron | 20.0% |
| !! | CCAAAAACATAATCAATATA+TGG | + | chr8_2:60831861-60831880 | None:intergenic | 20.0% |
| !!! | CCATATATTGATTATGTTTT+TGG | - | chr8_2:60831858-60831877 | Msa1259270:CDS | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | + | chr8_2:60832933-60832952 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | - | chr8_2:60832934-60832953 | Msa1259270:CDS | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | + | chr8_2:60833036-60833055 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | - | chr8_2:60833065-60833084 | Msa1259270:intron | 20.0% |
| !! | GTTTGATAGAAGAAAAATTA+TGG | - | chr8_2:60834422-60834441 | Msa1259270:five_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | - | chr8_2:60830594-60830613 | Msa1259270:three_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | + | chr8_2:60830706-60830725 | None:intergenic | 25.0% |
| ! | AAATTGAAACCAAACAACAT+GGG | + | chr8_2:60830734-60830753 | None:intergenic | 25.0% |
| ! | AAAATTGAAACCAAACAACA+TGG | + | chr8_2:60830735-60830754 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | - | chr8_2:60830977-60830996 | Msa1259270:CDS | 25.0% |
| ! | ATTGTGAAGAGAATTAATGT+TGG | - | chr8_2:60831082-60831101 | Msa1259270:CDS | 25.0% |
| ! | TTGTGAAGAGAATTAATGTT+GGG | - | chr8_2:60831083-60831102 | Msa1259270:CDS | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | + | chr8_2:60831190-60831209 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | - | chr8_2:60831213-60831232 | Msa1259270:CDS | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | - | chr8_2:60831214-60831233 | Msa1259270:CDS | 25.0% |
| ! | CAAGAATAATACACAAACAA+TGG | + | chr8_2:60831245-60831264 | None:intergenic | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+TGG | - | chr8_2:60831243-60831262 | Msa1259270:CDS | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | - | chr8_2:60831275-60831294 | Msa1259270:CDS | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | + | chr8_2:60831438-60831457 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | - | chr8_2:60831488-60831507 | Msa1259270:CDS | 25.0% |
| ! | CATAATCAATATATGGTATC+AGG | + | chr8_2:60831854-60831873 | None:intergenic | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | + | chr8_2:60831907-60831926 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | - | chr8_2:60832087-60832106 | Msa1259270:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | - | chr8_2:60832142-60832161 | Msa1259270:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | + | chr8_2:60832408-60832427 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | + | chr8_2:60832461-60832480 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | - | chr8_2:60832613-60832632 | Msa1259270:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | - | chr8_2:60832614-60832633 | Msa1259270:CDS | 25.0% |
| !!! | ACATGTGCTAATATTTTTTC+TGG | - | chr8_2:60832670-60832689 | Msa1259270:CDS | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | - | chr8_2:60832776-60832795 | Msa1259270:CDS | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | - | chr8_2:60832982-60833001 | Msa1259270:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | - | chr8_2:60833007-60833026 | Msa1259270:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | - | chr8_2:60833421-60833440 | Msa1259270:intron | 25.0% |
| ! | GAATGAAAATGAGAAAAGTA+AGG | + | chr8_2:60833726-60833745 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | - | chr8_2:60833765-60833784 | Msa1259270:intron | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | + | chr8_2:60834218-60834237 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | - | chr8_2:60834346-60834365 | Msa1259270:five_prime_UTR | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | + | chr8_2:60834359-60834378 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | + | chr8_2:60834404-60834423 | None:intergenic | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | - | chr8_2:60834557-60834576 | Msa1259270:five_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | - | chr8_2:60834638-60834657 | Msa1259270:five_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | + | chr8_2:60830529-60830548 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | + | chr8_2:60830535-60830554 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | - | chr8_2:60830627-60830646 | Msa1259270:three_prime_UTR | 30.0% |
| AATTGAAACCAAACAACATG+GGG | + | chr8_2:60830733-60830752 | None:intergenic | 30.0% | |
| TTTAATTGGGGTGCAAAAAT+TGG | - | chr8_2:60831043-60831062 | Msa1259270:CDS | 30.0% | |
| TTAATTGGGGTGCAAAAATT+GGG | - | chr8_2:60831044-60831063 | Msa1259270:CDS | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | - | chr8_2:60831186-60831205 | Msa1259270:CDS | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | + | chr8_2:60831191-60831210 | None:intergenic | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | + | chr8_2:60831422-60831441 | None:intergenic | 30.0% |
| ATAATAGAGTTCATACCACT+CGG | + | chr8_2:60831581-60831600 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | - | chr8_2:60831813-60831832 | Msa1259270:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | + | chr8_2:60832132-60832151 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | - | chr8_2:60832517-60832536 | Msa1259270:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | + | chr8_2:60832822-60832841 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | + | chr8_2:60832831-60832850 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | - | chr8_2:60832861-60832880 | Msa1259270:CDS | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | - | chr8_2:60833314-60833333 | Msa1259270:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | - | chr8_2:60833458-60833477 | Msa1259270:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | - | chr8_2:60833459-60833478 | Msa1259270:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | + | chr8_2:60833690-60833709 | None:intergenic | 30.0% |
| AGAAAAGTAAGGAAATTAGC+GGG | + | chr8_2:60833715-60833734 | None:intergenic | 30.0% | |
| GAGAAAAGTAAGGAAATTAG+CGG | + | chr8_2:60833716-60833735 | None:intergenic | 30.0% | |
| !! | TTTTGCTTCTTTTGAAGATG+AGG | - | chr8_2:60833831-60833850 | Msa1259270:intron | 30.0% |
| TTGTGTATAATTGAATCCTC+CGG | + | chr8_2:60833962-60833981 | None:intergenic | 30.0% | |
| ATATTAAAGAGTTGGAGACT+TGG | + | chr8_2:60834116-60834135 | None:intergenic | 30.0% | |
| CATGTCACATATTAAAGAGT+TGG | + | chr8_2:60834124-60834143 | None:intergenic | 30.0% | |
| CAACTCTTTAATATGTGACA+TGG | - | chr8_2:60834122-60834141 | Msa1259270:intron | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | - | chr8_2:60834351-60834370 | Msa1259270:five_prime_UTR | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | + | chr8_2:60830470-60830489 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | + | chr8_2:60830642-60830661 | None:intergenic | 35.0% | |
| ATTGAAACCAAACAACATGG+GGG | + | chr8_2:60830732-60830751 | None:intergenic | 35.0% | |
| AAGAATGAAGAAAGAGGAGA+AGG | + | chr8_2:60830763-60830782 | None:intergenic | 35.0% | |
| GACAGTAAGAATGAAGAAAG+AGG | + | chr8_2:60830769-60830788 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | + | chr8_2:60830820-60830839 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | - | chr8_2:60830929-60830948 | Msa1259270:CDS | 35.0% |
| !!! | GTGTTTTGAGGAAATGAGAA+TGG | - | chr8_2:60830941-60830960 | Msa1259270:CDS | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | - | chr8_2:60830986-60831005 | Msa1259270:CDS | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | - | chr8_2:60831115-60831134 | Msa1259270:CDS | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | - | chr8_2:60831206-60831225 | Msa1259270:CDS | 35.0% | |
| ! | TGGTTTGCAACTGAAATTGT+TGG | - | chr8_2:60831295-60831314 | Msa1259270:CDS | 35.0% |
| TGATGAAGTTGCAATCAGTT+AGG | - | chr8_2:60831520-60831539 | Msa1259270:CDS | 35.0% | |
| GCAATCAGTTAGGAATTTGA+TGG | - | chr8_2:60831530-60831549 | Msa1259270:CDS | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | - | chr8_2:60831816-60831835 | Msa1259270:intron | 35.0% | |
| !!! | GATTATGTTTTTGGAAGAGC+TGG | - | chr8_2:60831867-60831886 | Msa1259270:CDS | 35.0% |
| !!! | GATTTTGGTTCCACTTTTAC+TGG | - | chr8_2:60831894-60831913 | Msa1259270:CDS | 35.0% |
| CATATGCAACTCGATAAATG+AGG | + | chr8_2:60832044-60832063 | None:intergenic | 35.0% | |
| GTTTAGTTGACACCTTAACA+GGG | - | chr8_2:60832292-60832311 | Msa1259270:intron | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | - | chr8_2:60832379-60832398 | Msa1259270:intron | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | - | chr8_2:60832418-60832437 | Msa1259270:intron | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | - | chr8_2:60832419-60832438 | Msa1259270:intron | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | + | chr8_2:60832457-60832476 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | + | chr8_2:60832458-60832477 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | + | chr8_2:60832526-60832545 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | - | chr8_2:60832570-60832589 | Msa1259270:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | - | chr8_2:60832624-60832643 | Msa1259270:CDS | 35.0% | |
| TGGATTGACCTATTCTAACA+GGG | + | chr8_2:60832802-60832821 | None:intergenic | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | - | chr8_2:60832860-60832879 | Msa1259270:CDS | 35.0% | |
| ATTTGGAGACTGGAAAAGAT+AGG | - | chr8_2:60833151-60833170 | Msa1259270:CDS | 35.0% | |
| TTGACATGTTTACCAACTTG+TGG | + | chr8_2:60833329-60833348 | None:intergenic | 35.0% | |
| GTGTGAATAACCATCCATTA+GGG | + | chr8_2:60833860-60833879 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | + | chr8_2:60833861-60833880 | None:intergenic | 35.0% | |
| GTAAATGGATGGCATGATAT+CGG | + | chr8_2:60834001-60834020 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | - | chr8_2:60834081-60834100 | Msa1259270:intron | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | - | chr8_2:60834144-60834163 | Msa1259270:intron | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | - | chr8_2:60834176-60834195 | Msa1259270:intron | 35.0% |
| ACCTTCTACATCTATGACTA+AGG | - | chr8_2:60834263-60834282 | Msa1259270:CDS | 35.0% | |
| CCTTCTACATCTATGACTAA+GGG | - | chr8_2:60834264-60834283 | Msa1259270:CDS | 35.0% | |
| TACAAAAACCAATGCATGGA+GGG | + | chr8_2:60834472-60834491 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | + | chr8_2:60834476-60834495 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | - | chr8_2:60834562-60834581 | Msa1259270:five_prime_UTR | 35.0% |
| ATTGTTAGCAGATGCTTAGT+AGG | - | chr8_2:60834592-60834611 | Msa1259270:five_prime_UTR | 35.0% | |
| TTGTTAGCAGATGCTTAGTA+GGG | - | chr8_2:60834593-60834612 | Msa1259270:five_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | - | chr8_2:60830456-60830475 | Msa1259270:three_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | + | chr8_2:60830518-60830537 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | + | chr8_2:60830519-60830538 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | + | chr8_2:60830819-60830838 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | + | chr8_2:60830837-60830856 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | - | chr8_2:60831144-60831163 | Msa1259270:CDS | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | + | chr8_2:60831149-60831168 | None:intergenic | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | + | chr8_2:60831361-60831380 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | + | chr8_2:60831784-60831803 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | + | chr8_2:60831828-60831847 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | - | chr8_2:60831828-60831847 | Msa1259270:intron | 40.0% |
| !!! | TGTTTTTGGAAGAGCTGGTT+TGG | - | chr8_2:60831872-60831891 | Msa1259270:CDS | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | - | chr8_2:60831927-60831946 | Msa1259270:CDS | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | - | chr8_2:60831948-60831967 | Msa1259270:CDS | 40.0% | |
| ! | TCGAGTTGCATATGAAGCAA+AGG | - | chr8_2:60832050-60832069 | Msa1259270:intron | 40.0% |
| CGAGTTGCATATGAAGCAAA+GGG | - | chr8_2:60832051-60832070 | Msa1259270:intron | 40.0% | |
| TGCATATGAAGCAAAGGGAA+TGG | - | chr8_2:60832056-60832075 | Msa1259270:intron | 40.0% | |
| ! | TGAAGCAAAGGGAATGGATT+AGG | - | chr8_2:60832062-60832081 | Msa1259270:intron | 40.0% |
| !! | GAAGCAAAGGGAATGGATTA+GGG | - | chr8_2:60832063-60832082 | Msa1259270:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | - | chr8_2:60832150-60832169 | Msa1259270:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | - | chr8_2:60832155-60832174 | Msa1259270:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | - | chr8_2:60832228-60832247 | Msa1259270:intron | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | - | chr8_2:60832243-60832262 | Msa1259270:intron | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | - | chr8_2:60832291-60832310 | Msa1259270:intron | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | + | chr8_2:60832307-60832326 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | - | chr8_2:60832351-60832370 | Msa1259270:intron | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | - | chr8_2:60832423-60832442 | Msa1259270:intron | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | + | chr8_2:60832456-60832475 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | - | chr8_2:60832482-60832501 | Msa1259270:CDS | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | - | chr8_2:60832523-60832542 | Msa1259270:CDS | 40.0% |
| ! | GTGGATTGACCTATTCTAAC+AGG | + | chr8_2:60832803-60832822 | None:intergenic | 40.0% |
| CAAATTTCATCCGACAGACT+TGG | + | chr8_2:60833136-60833155 | None:intergenic | 40.0% | |
| CAAGTCTGTCGGATGAAATT+TGG | - | chr8_2:60833134-60833153 | Msa1259270:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | - | chr8_2:60833160-60833179 | Msa1259270:CDS | 40.0% | |
| ! | TACTAGTTGGCTTCTCTCTA+TGG | - | chr8_2:60833434-60833453 | Msa1259270:intron | 40.0% |
| CTTGGGAATGTGTAGATACT+GGG | - | chr8_2:60833476-60833495 | Msa1259270:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | - | chr8_2:60833673-60833692 | Msa1259270:intron | 40.0% |
| CAAAAGAAGCAAAATCGCCT+AGG | + | chr8_2:60833825-60833844 | None:intergenic | 40.0% | |
| TGAATAACCATCCATTAGGG+AGG | + | chr8_2:60833857-60833876 | None:intergenic | 40.0% | |
| TTGAAGAGCCAAAAGCTTGT+TGG | + | chr8_2:60833935-60833954 | None:intergenic | 40.0% | |
| !!! | CTTTTGGCTCTTCAAAAGAC+CGG | - | chr8_2:60833940-60833959 | Msa1259270:intron | 40.0% |
| ATGCCATCCATTTACTCAGT+TGG | - | chr8_2:60834006-60834025 | Msa1259270:intron | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | + | chr8_2:60834016-60834035 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | - | chr8_2:60834057-60834076 | Msa1259270:intron | 40.0% | |
| GATCTTCATCACCAAAAGCA+TGG | + | chr8_2:60834158-60834177 | None:intergenic | 40.0% | |
| CCCTTAGTCATAGATGTAGA+AGG | + | chr8_2:60834267-60834286 | None:intergenic | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | - | chr8_2:60834310-60834329 | Msa1259270:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | - | chr8_2:60834317-60834336 | Msa1259270:exon | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | - | chr8_2:60834322-60834341 | Msa1259270:exon | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | - | chr8_2:60834461-60834480 | Msa1259270:five_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | + | chr8_2:60834473-60834492 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | + | chr8_2:60834500-60834519 | None:intergenic | 40.0% | |
| ACGCGAAAGAAGAGAGTGAA+AGG | + | chr8_2:60830415-60830434 | None:intergenic | 45.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | - | chr8_2:60830791-60830810 | Msa1259270:CDS | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | - | chr8_2:60831143-60831162 | Msa1259270:CDS | 45.0% | |
| ATAGAGTTCATACCACTCGG+CGG | + | chr8_2:60831578-60831597 | None:intergenic | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | - | chr8_2:60831771-60831790 | Msa1259270:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | - | chr8_2:60831772-60831791 | Msa1259270:intron | 45.0% | |
| !!! | GGAAGAGCTGGTTTGGATTT+TGG | - | chr8_2:60831879-60831898 | Msa1259270:CDS | 45.0% |
| GACTTCTTTGCAGGTTAGAG+AGG | - | chr8_2:60831936-60831955 | Msa1259270:CDS | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | + | chr8_2:60832239-60832258 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | + | chr8_2:60832240-60832259 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | - | chr8_2:60832252-60832271 | Msa1259270:intron | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | - | chr8_2:60832296-60832315 | Msa1259270:intron | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | - | chr8_2:60832309-60832328 | Msa1259270:intron | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | - | chr8_2:60832329-60832348 | Msa1259270:intron | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | - | chr8_2:60832332-60832351 | Msa1259270:intron | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | + | chr8_2:60832336-60832355 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | - | chr8_2:60832350-60832369 | Msa1259270:intron | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | + | chr8_2:60832368-60832387 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | - | chr8_2:60832486-60832505 | Msa1259270:CDS | 45.0% |
| GAGTAAGGCCCTGTTAGAAT+AGG | - | chr8_2:60832791-60832810 | Msa1259270:CDS | 45.0% | |
| TTTCATCCGACAGACTTGGA+GGG | + | chr8_2:60833132-60833151 | None:intergenic | 45.0% | |
| ATTTCATCCGACAGACTTGG+AGG | + | chr8_2:60833133-60833152 | None:intergenic | 45.0% | |
| GTCGGATGAAATTTGGAGAC+TGG | - | chr8_2:60833141-60833160 | Msa1259270:CDS | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | - | chr8_2:60833475-60833494 | Msa1259270:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | - | chr8_2:60833482-60833501 | Msa1259270:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | - | chr8_2:60833483-60833502 | Msa1259270:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | - | chr8_2:60833502-60833521 | Msa1259270:intron | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | - | chr8_2:60833525-60833544 | Msa1259270:intron | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | - | chr8_2:60833783-60833802 | Msa1259270:intron | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | - | chr8_2:60833805-60833824 | Msa1259270:intron | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | + | chr8_2:60834012-60834031 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | - | chr8_2:60834009-60834028 | Msa1259270:intron | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | - | chr8_2:60834023-60834042 | Msa1259270:intron | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | - | chr8_2:60834033-60834052 | Msa1259270:intron | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | + | chr8_2:60834063-60834082 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | + | chr8_2:60834077-60834096 | None:intergenic | 45.0% | |
| AAAGAGTTGGAGACTTGGAC+TGG | + | chr8_2:60834111-60834130 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | - | chr8_2:60834239-60834258 | Msa1259270:intron | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | + | chr8_2:60834261-60834280 | None:intergenic | 45.0% |
| TGACTAAGGGAAAAGCTCAG+AGG | - | chr8_2:60834277-60834296 | Msa1259270:CDS | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | - | chr8_2:60834481-60834500 | Msa1259270:five_prime_UTR | 45.0% |
| !!! | ATAGTTTTATTATTATATAT+TGG | - | chr8_2:60830659-60830678 | Msa1259270:three_prime_UTR | 5.0% |
| GTCTACACCCCCATGTTGTT+TGG | - | chr8_2:60830722-60830741 | Msa1259270:three_prime_UTR | 50.0% | |
| CTTCGACTATGTCGCTCAAG+AGG | - | chr8_2:60830790-60830809 | Msa1259270:CDS | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | - | chr8_2:60830792-60830811 | Msa1259270:CDS | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | - | chr8_2:60830850-60830869 | Msa1259270:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | + | chr8_2:60830858-60830877 | None:intergenic | 50.0% | |
| ! | TCCTCCTTTTAGCAGGTCAG+TGG | - | chr8_2:60830857-60830876 | Msa1259270:CDS | 50.0% |
| ! | CCTCCTTTTAGCAGGTCAGT+GGG | - | chr8_2:60830858-60830877 | Msa1259270:CDS | 50.0% |
| ACACCCACTGACCTGCTAAA+AGG | + | chr8_2:60830864-60830883 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | - | chr8_2:60831129-60831148 | Msa1259270:CDS | 50.0% | |
| TTACAGCCCACAAAGCATGG+TGG | + | chr8_2:60831781-60831800 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | - | chr8_2:60832444-60832463 | Msa1259270:intron | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | - | chr8_2:60832532-60832551 | Msa1259270:CDS | 50.0% |
| GCAAAGATGGAGCTTTCCAC+AGG | - | chr8_2:60833173-60833192 | Msa1259270:intron | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | + | chr8_2:60833192-60833211 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | - | chr8_2:60833501-60833520 | Msa1259270:intron | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | + | chr8_2:60833534-60833553 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | + | chr8_2:60833605-60833624 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | - | chr8_2:60833604-60833623 | Msa1259270:intron | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | - | chr8_2:60833605-60833624 | Msa1259270:intron | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | + | chr8_2:60833780-60833799 | None:intergenic | 50.0% | |
| TGAAGATGAGGCCTCCCTAA+TGG | - | chr8_2:60833843-60833862 | Msa1259270:intron | 50.0% | |
| ! | ATCGAGCGCCAACAAGCTTT+TGG | - | chr8_2:60833924-60833943 | Msa1259270:intron | 50.0% |
| ! | TTGGCTCTTCAAAAGACCGG+AGG | - | chr8_2:60833943-60833962 | Msa1259270:intron | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | - | chr8_2:60834283-60834302 | Msa1259270:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | - | chr8_2:60834290-60834309 | Msa1259270:CDS | 50.0% | |
| CCCACTGACCTGCTAAAAGG+AGG | + | chr8_2:60830861-60830880 | None:intergenic | 55.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | - | chr8_2:60831128-60831147 | Msa1259270:CDS | 55.0% | |
| !! | GGAGCCAATTCTAGAGCCCT+TGG | - | chr8_2:60831551-60831570 | Msa1259270:CDS | 55.0% |
| !! | CGGACCAAGGGCTCTAGAAT+TGG | + | chr8_2:60831558-60831577 | None:intergenic | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | - | chr8_2:60832538-60832557 | Msa1259270:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | - | chr8_2:60832543-60832562 | Msa1259270:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | - | chr8_2:60832544-60832563 | Msa1259270:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | - | chr8_2:60832545-60832564 | Msa1259270:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | - | chr8_2:60833123-60833142 | Msa1259270:intron | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | + | chr8_2:60833259-60833278 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | - | chr8_2:60833617-60833636 | Msa1259270:intron | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | + | chr8_2:60833624-60833643 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | - | chr8_2:60833847-60833866 | Msa1259270:intron | 55.0% | |
| CATACCACTCGGCGGACCAA+GGG | + | chr8_2:60831570-60831589 | None:intergenic | 60.0% | |
| TCATACCACTCGGCGGACCA+AGG | + | chr8_2:60831571-60831590 | None:intergenic | 60.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | - | chr8_2:60832557-60832576 | Msa1259270:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | + | chr8_2:60833129-60833148 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | + | chr8_2:60833902-60833921 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | + | chr8_2:60833903-60833922 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | - | chr8_2:60833901-60833920 | Msa1259270:intron | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | + | chr8_2:60833920-60833939 | None:intergenic | 60.0% | |
| CCCAAGCTCTCCGAGAACCG+AGG | - | chr8_2:60833900-60833919 | Msa1259270:intron | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | + | chr8_2:60833904-60833923 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | + | chr8_2:60833913-60833932 | None:intergenic | 65.0% | |
| AGAGCCCTTGGTCCGCCGAG+TGG | - | chr8_2:60831563-60831582 | Msa1259270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 60830409 | 60834719 | 60830409 | ID=Msa1259270;Name=Msa1259270 |
| chr8_2 | mRNA | 60830409 | 60834719 | 60830409 | ID=Msa1259270-mRNA-1;Parent=Msa1259270;Name=Msa1259270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=389|0.83|0.85|1|1|1|7|348|538 |
| chr8_2 | exon | 60830409 | 60831341 | 60830409 | ID=Msa1259270-mRNA-1:exon:19098;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60831461 | 60831637 | 60831461 | ID=Msa1259270-mRNA-1:exon:19097;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60831855 | 60832015 | 60831855 | ID=Msa1259270-mRNA-1:exon:19096;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60832477 | 60832964 | 60832477 | ID=Msa1259270-mRNA-1:exon:19095;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60833127 | 60833179 | 60833127 | ID=Msa1259270-mRNA-1:exon:19094;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60833544 | 60833622 | 60833544 | ID=Msa1259270-mRNA-1:exon:19093;Parent=Msa1259270-mRNA-1 |
| chr8_2 | exon | 60834257 | 60834719 | 60834257 | ID=Msa1259270-mRNA-1:exon:19092;Parent=Msa1259270-mRNA-1 |
| chr8_2 | five_prime_UTR | 60834331 | 60834719 | 60834331 | ID=Msa1259270-mRNA-1:five_prime_utr;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60834257 | 60834330 | 60834257 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60833544 | 60833622 | 60833544 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60833127 | 60833179 | 60833127 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60832477 | 60832964 | 60832477 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60831855 | 60832015 | 60831855 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60831461 | 60831637 | 60831461 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | CDS | 60830757 | 60831341 | 60830757 | ID=Msa1259270-mRNA-1:cds;Parent=Msa1259270-mRNA-1 |
| chr8_2 | three_prime_UTR | 60830409 | 60830756 | 60830409 | ID=Msa1259270-mRNA-1:three_prime_utr;Parent=Msa1259270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
