Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210330 | XP_003608937.2 | 96.279 | 215 | 3 | 2 | 1 | 210 | 1 | 215 | 5.54e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210330 | sp|Q9SB04|ARR5_ARATH | 73.077 | 156 | 40 | 2 | 23 | 177 | 25 | 179 | 1.10e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1210330 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0998560 | Msa1210330 | 0.804224 | 2.393393e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210330 | MtrunA17_Chr4g0059571 | 95.814 | 215 | 3 | 3 | 1 | 210 | 1 | 214 | 3.51e-142 | 395 |
| Msa1210330 | MtrunA17_Chr3g0118211 | 72.038 | 211 | 47 | 5 | 1 | 210 | 1 | 200 | 1.43e-96 | 279 |
| Msa1210330 | MtrunA17_Chr5g0414931 | 71.528 | 144 | 36 | 2 | 22 | 161 | 15 | 157 | 4.42e-63 | 196 |
| Msa1210330 | MtrunA17_Chr1g0170741 | 69.718 | 142 | 39 | 2 | 18 | 156 | 3 | 143 | 1.13e-61 | 191 |
| Msa1210330 | MtrunA17_Chr7g0256551 | 55.215 | 163 | 63 | 3 | 18 | 171 | 4 | 165 | 7.76e-55 | 174 |
| Msa1210330 | MtrunA17_Chr8g0352871 | 55.090 | 167 | 64 | 3 | 18 | 175 | 4 | 168 | 2.46e-53 | 169 |
| Msa1210330 | MtrunA17_Chr3g0082861 | 52.381 | 168 | 62 | 3 | 21 | 175 | 2 | 164 | 8.87e-50 | 159 |
| Msa1210330 | MtrunA17_Chr3g0128691 | 58.647 | 133 | 50 | 2 | 24 | 153 | 19 | 149 | 1.71e-48 | 155 |
| Msa1210330 | MtrunA17_Chr3g0124861 | 50.667 | 150 | 54 | 3 | 22 | 153 | 21 | 168 | 5.21e-44 | 147 |
| Msa1210330 | MtrunA17_Chr4g0021731 | 55.682 | 88 | 39 | 0 | 13 | 100 | 1 | 88 | 3.04e-25 | 94.4 |
| Msa1210330 | MtrunA17_Chr3g0123131 | 31.690 | 142 | 81 | 5 | 17 | 158 | 14 | 139 | 7.94e-15 | 72.4 |
| Msa1210330 | MtrunA17_Chr7g0275891 | 34.351 | 131 | 74 | 3 | 23 | 153 | 9 | 127 | 8.62e-15 | 72.0 |
| Msa1210330 | MtrunA17_Chr7g0275401 | 33.588 | 131 | 74 | 3 | 23 | 153 | 9 | 126 | 5.06e-14 | 69.3 |
| Msa1210330 | MtrunA17_Chr8g0345901 | 29.545 | 132 | 83 | 2 | 25 | 156 | 38 | 159 | 7.16e-14 | 69.7 |
| Msa1210330 | MtrunA17_Chr8g0376881 | 29.605 | 152 | 91 | 4 | 8 | 159 | 17 | 152 | 8.13e-14 | 69.7 |
| Msa1210330 | MtrunA17_Chr1g0149851 | 32.061 | 131 | 76 | 2 | 23 | 153 | 9 | 126 | 3.65e-13 | 67.8 |
| Msa1210330 | MtrunA17_Chr3g0127941 | 29.771 | 131 | 82 | 2 | 23 | 153 | 56 | 176 | 6.44e-13 | 67.0 |
| Msa1210330 | MtrunA17_Chr1g0149841 | 31.298 | 131 | 77 | 2 | 23 | 153 | 9 | 126 | 9.11e-13 | 66.2 |
| Msa1210330 | MtrunA17_Chr7g0276361 | 26.415 | 159 | 107 | 3 | 23 | 181 | 14 | 162 | 6.42e-12 | 63.9 |
| Msa1210330 | MtrunA17_Chr4g0030271 | 30.534 | 131 | 81 | 2 | 23 | 153 | 89 | 209 | 1.04e-11 | 63.5 |
| Msa1210330 | MtrunA17_Chr1g0181811 | 29.771 | 131 | 82 | 3 | 23 | 153 | 85 | 205 | 7.32e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210330 | AT3G48100.1 | 73.077 | 156 | 40 | 2 | 23 | 177 | 25 | 179 | 1.11e-74 | 223 |
| Msa1210330 | AT5G62920.1 | 73.203 | 153 | 40 | 1 | 23 | 175 | 25 | 176 | 6.04e-72 | 216 |
| Msa1210330 | AT1G74890.1 | 72.483 | 149 | 37 | 3 | 22 | 167 | 17 | 164 | 5.97e-68 | 207 |
| Msa1210330 | AT1G59940.1 | 58.000 | 200 | 73 | 4 | 13 | 203 | 23 | 220 | 5.88e-67 | 206 |
| Msa1210330 | AT1G19050.1 | 64.286 | 168 | 46 | 4 | 3 | 164 | 2 | 161 | 8.36e-67 | 204 |
| Msa1210330 | AT1G10470.3 | 72.340 | 141 | 38 | 1 | 13 | 153 | 10 | 149 | 1.01e-65 | 203 |
| Msa1210330 | AT1G59940.2 | 58.000 | 200 | 73 | 4 | 13 | 203 | 115 | 312 | 1.43e-65 | 205 |
| Msa1210330 | AT1G10470.1 | 72.340 | 141 | 38 | 1 | 13 | 153 | 24 | 163 | 1.79e-65 | 202 |
| Msa1210330 | AT2G40670.2 | 62.222 | 135 | 48 | 1 | 22 | 153 | 28 | 162 | 2.40e-55 | 174 |
| Msa1210330 | AT3G56380.2 | 62.406 | 133 | 49 | 1 | 22 | 153 | 19 | 151 | 5.63e-55 | 172 |
| Msa1210330 | AT3G57040.2 | 58.940 | 151 | 51 | 3 | 18 | 158 | 4 | 153 | 1.89e-53 | 171 |
| Msa1210330 | AT3G57040.1 | 58.940 | 151 | 51 | 3 | 18 | 158 | 4 | 153 | 1.89e-53 | 171 |
| Msa1210330 | AT2G41310.1 | 60.000 | 145 | 49 | 2 | 21 | 157 | 7 | 150 | 3.30e-53 | 170 |
| Msa1210330 | AT2G40670.1 | 61.481 | 135 | 48 | 2 | 22 | 153 | 28 | 161 | 1.28e-52 | 167 |
| Msa1210330 | AT3G56380.1 | 61.654 | 133 | 49 | 2 | 22 | 153 | 19 | 150 | 4.16e-52 | 165 |
| Msa1210330 | AT1G10470.2 | 62.667 | 75 | 27 | 1 | 91 | 164 | 25 | 99 | 7.21e-24 | 94.0 |
| Msa1210330 | AT2G07440.1 | 58.730 | 63 | 26 | 0 | 95 | 157 | 2 | 64 | 2.29e-17 | 75.5 |
| Msa1210330 | AT5G07210.2 | 29.630 | 162 | 100 | 3 | 22 | 183 | 15 | 162 | 6.71e-16 | 75.9 |
| Msa1210330 | AT1G67710.1 | 32.692 | 156 | 89 | 5 | 13 | 165 | 1 | 143 | 7.67e-16 | 75.9 |
| Msa1210330 | AT5G24470.1 | 29.851 | 134 | 84 | 2 | 23 | 156 | 50 | 173 | 6.07e-14 | 70.5 |
| Msa1210330 | AT2G25180.1 | 29.787 | 141 | 83 | 4 | 13 | 153 | 10 | 134 | 3.35e-13 | 68.2 |
| Msa1210330 | AT5G60100.7 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 4.14e-12 | 64.7 |
| Msa1210330 | AT5G60100.6 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 4.14e-12 | 64.7 |
| Msa1210330 | AT5G60100.4 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 4.14e-12 | 64.7 |
| Msa1210330 | AT2G46790.3 | 28.244 | 131 | 84 | 2 | 23 | 153 | 37 | 157 | 4.22e-12 | 64.7 |
| Msa1210330 | AT5G60100.2 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 4.68e-12 | 64.7 |
| Msa1210330 | AT2G46790.1 | 28.244 | 131 | 84 | 2 | 23 | 153 | 37 | 157 | 5.17e-12 | 64.7 |
| Msa1210330 | AT5G60100.5 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 7.03e-12 | 64.3 |
| Msa1210330 | AT5G60100.3 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 7.03e-12 | 64.3 |
| Msa1210330 | AT5G60100.1 | 32.061 | 131 | 79 | 3 | 23 | 153 | 64 | 184 | 7.03e-12 | 64.3 |
| Msa1210330 | AT3G16857.1 | 29.577 | 142 | 84 | 4 | 12 | 153 | 29 | 154 | 1.56e-11 | 63.2 |
| Msa1210330 | AT3G16857.2 | 29.577 | 142 | 84 | 4 | 12 | 153 | 29 | 154 | 1.62e-11 | 63.2 |
| Msa1210330 | AT2G27070.1 | 29.560 | 159 | 93 | 5 | 22 | 177 | 15 | 157 | 3.19e-11 | 62.4 |
| Msa1210330 | AT2G01760.1 | 30.380 | 158 | 88 | 7 | 14 | 170 | 5 | 141 | 3.34e-11 | 62.0 |
| Msa1210330 | AT5G02810.1 | 29.771 | 131 | 82 | 3 | 23 | 153 | 78 | 198 | 7.08e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACATTAGTATTGCAAAAT+TGG | 0.190761 | 8_1:-69179406 | None:intergenic |
| CTCTCATGATGAAATCTTTC+AGG | 0.203021 | 8_1:-69179181 | None:intergenic |
| ATTCATTGTTCAGTTTGTTA+TGG | 0.345892 | 8_1:+69177487 | Msa1210330:exon |
| TGGTTAACAAATTCAAAATA+TGG | 0.348329 | 8_1:-69179427 | None:intergenic |
| TTCACTAATTTGCAGGTGTT+TGG | 0.354372 | 8_1:+69179103 | Msa1210330:intron |
| TTGCAAAATTGGAGAAATAT+AGG | 0.385342 | 8_1:-69179395 | None:intergenic |
| GTTATATTTACATGAGCGTT+AGG | 0.414029 | 8_1:-69177379 | None:intergenic |
| TTGATGGAGGAATCACCTTC+AGG | 0.429557 | 8_1:+69177539 | Msa1210330:CDS |
| ATGACGGATTATTCCATGCC+TGG | 0.447268 | 8_1:+69177946 | Msa1210330:CDS |
| TATTCCATGCCTGGGATGAC+AGG | 0.450141 | 8_1:+69177955 | Msa1210330:CDS |
| TAATAAATAGTGAAATAAGA+TGG | 0.461191 | 8_1:-69177056 | None:intergenic |
| GAGGAATCACCTTCAGGTGC+AGG | 0.470142 | 8_1:+69177545 | Msa1210330:CDS |
| CTTACATCTGACAATTTGAC+TGG | 0.476820 | 8_1:-69179155 | None:intergenic |
| AATAAATAGTGAAATAAGAT+GGG | 0.492951 | 8_1:-69177055 | None:intergenic |
| GATGGAGAGAACAGTGATGT+TGG | 0.500241 | 8_1:+69177796 | Msa1210330:CDS |
| CAGTTTGTTATGGCTGCCGC+CGG | 0.507838 | 8_1:+69177497 | Msa1210330:exon |
| TTGAAGATTTCTTCATGCAA+AGG | 0.508242 | 8_1:+69177629 | Msa1210330:CDS |
| GAAGGTTAATTTGATAATGA+CGG | 0.519870 | 8_1:+69177930 | Msa1210330:CDS |
| ACTAATTTGCAGGTGTTTGG+AGG | 0.520826 | 8_1:+69179106 | Msa1210330:intron |
| ATTTGCAGGTGTTTGGAGGA+AGG | 0.521653 | 8_1:+69179110 | Msa1210330:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536780 | 8_1:-69177964 | None:intergenic |
| GATAATGTTGATGGCGAAAG+TGG | 0.540401 | 8_1:-69179332 | None:intergenic |
| TGAATTACTCAAGAAAATCA+AGG | 0.543151 | 8_1:+69177981 | Msa1210330:CDS |
| TGCAATTCCCCTGCACCTGA+AGG | 0.564770 | 8_1:-69177554 | None:intergenic |
| TGACGGATTATTCCATGCCT+GGG | 0.567665 | 8_1:+69177947 | Msa1210330:CDS |
| AGGAATCACCTTCAGGTGCA+GGG | 0.570190 | 8_1:+69177546 | Msa1210330:CDS |
| CGTTAGGAAAGAGAAAATGA+AGG | 0.576825 | 8_1:-69177363 | None:intergenic |
| ATATCCTGTCATCCCAGGCA+TGG | 0.578908 | 8_1:-69177959 | None:intergenic |
| TCAGACGACATGATCACCAC+TGG | 0.582337 | 8_1:-69178169 | None:intergenic |
| ATTCCTCCATCAAATTCGAC+CGG | 0.585814 | 8_1:-69177529 | None:intergenic |
| AAAATGAGAAATGAAAGAGT+GGG | 0.590305 | 8_1:-69177403 | None:intergenic |
| GTTATGGTGGCAGGGTGTGA+AGG | 0.590843 | 8_1:+69177912 | Msa1210330:intron |
| CTGAAAGATTTCATCATGAG+AGG | 0.595036 | 8_1:+69179182 | Msa1210330:CDS |
| CAGGTGTTTGGAGGAAGGAG+CGG | 0.597585 | 8_1:+69179115 | Msa1210330:intron |
| AAATGAGAAATGAAAGAGTG+GGG | 0.598880 | 8_1:-69177402 | None:intergenic |
| CATCATGAGAGGTGAAGTGA+AGG | 0.602332 | 8_1:+69179193 | Msa1210330:CDS |
| GGATCACATGAATGACGCAT+TGG | 0.604562 | 8_1:-69179290 | None:intergenic |
| ATTCGACCGGAAAATCTCGC+CGG | 0.617787 | 8_1:-69177516 | None:intergenic |
| GAGAATGTAGTTGATAGAGA+TGG | 0.621435 | 8_1:-69179266 | None:intergenic |
| GTGTTTGGAGGAAGGAGCGG+AGG | 0.624937 | 8_1:+69179118 | Msa1210330:CDS |
| GTTAGGAAAGAGAAAATGAA+GGG | 0.630292 | 8_1:-69177362 | None:intergenic |
| TTTCCGGTCGAATTTGATGG+AGG | 0.631772 | 8_1:+69177526 | Msa1210330:CDS |
| GGAATCACCTTCAGGTGCAG+GGG | 0.635571 | 8_1:+69177547 | Msa1210330:CDS |
| TGAGTACAAACTGTATAGAG+TGG | 0.655712 | 8_1:-69179447 | None:intergenic |
| CGACCGGAAAATCTCGCCGG+CGG | 0.669618 | 8_1:-69177513 | None:intergenic |
| ATGAGAGGTGAAGTGAAGGA+TGG | 0.680662 | 8_1:+69179197 | Msa1210330:CDS |
| AGTGGTGAGAACACTGACGA+TGG | 0.682583 | 8_1:-69179314 | None:intergenic |
| AATGAGAAATGAAAGAGTGG+GGG | 0.683813 | 8_1:-69177401 | None:intergenic |
| GGTGAGAACACTGACGATGG+CGG | 0.683927 | 8_1:-69179311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTTCTTTTTATTTTTT+TGG | - | chr8_1:69178837-69178856 | None:intergenic | 10.0% |
| !! | AATAAAAAGAAACTAATAAA+AGG | + | chr8_1:69178841-69178860 | Msa1210330:intron | 10.0% |
| !! | AATAAATAGTGAAATAAGAT+GGG | - | chr8_1:69177058-69177077 | None:intergenic | 15.0% |
| !! | TAATAAATAGTGAAATAAGA+TGG | - | chr8_1:69177059-69177078 | None:intergenic | 15.0% |
| !! | AATTATCAACAATTCAAATA+AGG | - | chr8_1:69178035-69178054 | None:intergenic | 15.0% |
| !!! | TTTTTGAAATTTTATATTGG+AGG | + | chr8_1:69178076-69178095 | Msa1210330:intron | 15.0% |
| !! | AAACTAATAAAAGGAATATT+TGG | + | chr8_1:69178850-69178869 | Msa1210330:intron | 15.0% |
| !! | ATTACAATTACATTAATAGA+AGG | - | chr8_1:69178900-69178919 | None:intergenic | 15.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | + | chr8_1:69177291-69177310 | Msa1210330:intron | 20.0% |
| !!! | AATGTTTTTTGTTTCAGTTA+CGG | + | chr8_1:69177732-69177751 | Msa1210330:intron | 20.0% |
| !! | AAATCAAGGTGATTAATTAT+TGG | + | chr8_1:69177995-69178014 | Msa1210330:intron | 20.0% |
| !! | ATTAGAATTAAGAAACTGTA+TGG | - | chr8_1:69178408-69178427 | None:intergenic | 20.0% |
| !! | ACAGTTTCTTAATTCTAATT+TGG | + | chr8_1:69178409-69178428 | Msa1210330:intron | 20.0% |
| !! | AATGAATTTATTTCCTGATT+AGG | - | chr8_1:69178478-69178497 | None:intergenic | 20.0% |
| !!! | AATCAGTTTATTTTTTTGAC+TGG | + | chr8_1:69178709-69178728 | Msa1210330:intron | 20.0% |
| !!! | TTGTTTTCATATGATTGATA+AGG | - | chr8_1:69178775-69178794 | None:intergenic | 20.0% |
| !!! | ACAAATGTGCATATTATTTT+GGG | - | chr8_1:69178952-69178971 | None:intergenic | 20.0% |
| !!! | TACAAATGTGCATATTATTT+TGG | - | chr8_1:69178953-69178972 | None:intergenic | 20.0% |
| !! | AAATAAAACTATTAAGAAGC+AGG | - | chr8_1:69179084-69179103 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCACTAATTTGC+AGG | + | chr8_1:69179096-69179115 | Msa1210330:intron | 20.0% |
| !! | TGGTTAACAAATTCAAAATA+TGG | - | chr8_1:69179430-69179449 | None:intergenic | 20.0% |
| !!! | ATAACAGAATCACTATTTTT+TGG | + | chr8_1:69179497-69179516 | Msa1210330:three_prime_UTR | 20.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr8_1:69177304-69177323 | Msa1210330:intron | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr8_1:69177305-69177324 | Msa1210330:intron | 25.0% |
| ! | AAAATGAGAAATGAAAGAGT+GGG | - | chr8_1:69177406-69177425 | None:intergenic | 25.0% |
| ! | AAAAATGAGAAATGAAAGAG+TGG | - | chr8_1:69177407-69177426 | None:intergenic | 25.0% |
| !!! | ATTCATTGTTCAGTTTGTTA+TGG | + | chr8_1:69177487-69177506 | Msa1210330:exon | 25.0% |
| ! | ATGTAAGCAAATTATGTTTC+TGG | + | chr8_1:69177824-69177843 | Msa1210330:intron | 25.0% |
| ! | TCTGGATTATTAACTTTGTT+TGG | + | chr8_1:69177842-69177861 | Msa1210330:intron | 25.0% |
| ! | TTTGTTTGGATGTTGTAATT+TGG | + | chr8_1:69177856-69177875 | Msa1210330:intron | 25.0% |
| !!! | GTTGTTGTTTTGTTATGTTA+TGG | + | chr8_1:69177896-69177915 | Msa1210330:intron | 25.0% |
| !!! | GAAGGTTAATTTGATAATGA+CGG | + | chr8_1:69177930-69177949 | Msa1210330:CDS | 25.0% |
| ! | TGAATTACTCAAGAAAATCA+AGG | + | chr8_1:69177981-69178000 | Msa1210330:CDS | 25.0% |
| !! | TGAAATTTTATATTGGAGGA+AGG | + | chr8_1:69178080-69178099 | Msa1210330:intron | 25.0% |
| ! | TTCTAGTGTGATTTAAACTT+TGG | + | chr8_1:69178250-69178269 | Msa1210330:intron | 25.0% |
| ! | AATTAAGAAACTGTATGGAA+TGG | - | chr8_1:69178403-69178422 | None:intergenic | 25.0% |
| !! | ATATTTGGCAAGAATCTTTT+AGG | + | chr8_1:69178865-69178884 | Msa1210330:intron | 25.0% |
| ! | ATATGCACATTTGTATTGTA+TGG | + | chr8_1:69178958-69178977 | Msa1210330:intron | 25.0% |
| !!! | TTTTTAGAGGATAATGTTGA+TGG | - | chr8_1:69179344-69179363 | None:intergenic | 25.0% |
| !!! | TCACAATCTAGATTTTTTAG+AGG | - | chr8_1:69179357-69179376 | None:intergenic | 25.0% |
| ! | TTGCAAAATTGGAGAAATAT+AGG | - | chr8_1:69179398-69179417 | None:intergenic | 25.0% |
| !! | TCAAGATTTTCAATGAGAAA+GGG | + | chr8_1:69179467-69179486 | Msa1210330:three_prime_UTR | 25.0% |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr8_1:69177092-69177111 | None:intergenic | 30.0% | |
| AGAAAAATAGAGTCAAAGCA+TGG | + | chr8_1:69177261-69177280 | Msa1210330:intron | 30.0% | |
| GTTAGGAAAGAGAAAATGAA+GGG | - | chr8_1:69177365-69177384 | None:intergenic | 30.0% | |
| GTTATATTTACATGAGCGTT+AGG | - | chr8_1:69177382-69177401 | None:intergenic | 30.0% | |
| AAATGAGAAATGAAAGAGTG+GGG | - | chr8_1:69177405-69177424 | None:intergenic | 30.0% | |
| TTGAAGATTTCTTCATGCAA+AGG | + | chr8_1:69177629-69177648 | Msa1210330:CDS | 30.0% | |
| !! | GTTGTTTTGTTATGTTATGG+TGG | + | chr8_1:69177899-69177918 | Msa1210330:intron | 30.0% |
| ! | AATTTTATATTGGAGGAAGG+TGG | + | chr8_1:69178083-69178102 | Msa1210330:intron | 30.0% |
| CTGCTGAAATTAATACAAAC+AGG | - | chr8_1:69178125-69178144 | None:intergenic | 30.0% | |
| CTGTTTGTATTAATTTCAGC+AGG | + | chr8_1:69178123-69178142 | Msa1210330:intron | 30.0% | |
| !!! | ATGTTTTGACTCGAATTGAT+AGG | + | chr8_1:69178194-69178213 | Msa1210330:CDS | 30.0% |
| AGTGTGATTTAAACTTTGGA+TGG | + | chr8_1:69178254-69178273 | Msa1210330:intron | 30.0% | |
| TGTATGGAATGGAATTCAAT+AGG | - | chr8_1:69178392-69178411 | None:intergenic | 30.0% | |
| GAATTTATTTCCTGATTAGG+TGG | - | chr8_1:69178475-69178494 | None:intergenic | 30.0% | |
| CAGGAAATAAATTCATTGTG+TGG | + | chr8_1:69178481-69178500 | Msa1210330:intron | 30.0% | |
| GAAACACAAATTTCAGAGAA+GGG | - | chr8_1:69178574-69178593 | None:intergenic | 30.0% | |
| TGAAACACAAATTTCAGAGA+AGG | - | chr8_1:69178575-69178594 | None:intergenic | 30.0% | |
| ! | TATGGTGTTCTTTGTTTCTT+TGG | + | chr8_1:69178746-69178765 | Msa1210330:intron | 30.0% |
| GGACATTAGTATTGCAAAAT+TGG | - | chr8_1:69179409-69179428 | None:intergenic | 30.0% | |
| ! | CTCAAGATTTTCAATGAGAA+AGG | + | chr8_1:69179466-69179485 | Msa1210330:three_prime_UTR | 30.0% |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr8_1:69177093-69177112 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr8_1:69177309-69177328 | Msa1210330:intron | 35.0% | |
| CGTTAGGAAAGAGAAAATGA+AGG | - | chr8_1:69177366-69177385 | None:intergenic | 35.0% | |
| AATGAGAAATGAAAGAGTGG+GGG | - | chr8_1:69177404-69177423 | None:intergenic | 35.0% | |
| AAAGAAACCGAAAAACACAG+AGG | - | chr8_1:69177441-69177460 | None:intergenic | 35.0% | |
| !! | TTTTGTTATGTTATGGTGGC+AGG | + | chr8_1:69177903-69177922 | Msa1210330:intron | 35.0% |
| ! | TTTGTTATGTTATGGTGGCA+GGG | + | chr8_1:69177904-69177923 | Msa1210330:intron | 35.0% |
| !!! | TGTTTTTAGAGAGATTCCAG+TGG | + | chr8_1:69178153-69178172 | Msa1210330:CDS | 35.0% |
| !!! | CCAAATACGCATGTTTTAAC+AGG | - | chr8_1:69178337-69178356 | None:intergenic | 35.0% |
| CCTGTTAAAACATGCGTATT+TGG | + | chr8_1:69178334-69178353 | Msa1210330:intron | 35.0% | |
| GAATTCAATAGGAGCTTAAC+TGG | - | chr8_1:69178381-69178400 | None:intergenic | 35.0% | |
| ! | GGTGTTTCTTTTAATCTCTC+CGG | + | chr8_1:69178430-69178449 | Msa1210330:intron | 35.0% |
| CAGATTGGATGCATATTTAC+CGG | - | chr8_1:69178452-69178471 | None:intergenic | 35.0% | |
| TTACGCCTCCATATCTATTT+GGG | - | chr8_1:69178509-69178528 | None:intergenic | 35.0% | |
| GTTTAAATGTTGAAGCTCCA+TGG | + | chr8_1:69178537-69178556 | Msa1210330:intron | 35.0% | |
| GGAATCTGAAGGACTTAATT+TGG | - | chr8_1:69178656-69178675 | None:intergenic | 35.0% | |
| !! | GTTTTATTGAGGGAATCTGA+AGG | - | chr8_1:69178667-69178686 | None:intergenic | 35.0% |
| ! | TGATTCGAGTTAAAAGAGCT+GGG | - | chr8_1:69178694-69178713 | None:intergenic | 35.0% |
| CTGGAACTCGAAAAAGTTTA+TGG | + | chr8_1:69178728-69178747 | Msa1210330:intron | 35.0% | |
| ! | TTTGGCAAGAATCTTTTAGG+CGG | + | chr8_1:69178868-69178887 | Msa1210330:intron | 35.0% |
| ! | TGTATTGTATGGAGTGCTTT+AGG | + | chr8_1:69178969-69178988 | Msa1210330:intron | 35.0% |
| ! | TTCACTAATTTGCAGGTGTT+TGG | + | chr8_1:69179103-69179122 | Msa1210330:intron | 35.0% |
| CTTACATCTGACAATTTGAC+TGG | - | chr8_1:69179158-69179177 | None:intergenic | 35.0% | |
| CTCTCATGATGAAATCTTTC+AGG | - | chr8_1:69179184-69179203 | None:intergenic | 35.0% | |
| CTGAAAGATTTCATCATGAG+AGG | + | chr8_1:69179182-69179201 | Msa1210330:CDS | 35.0% | |
| !! | GAGAATGTAGTTGATAGAGA+TGG | - | chr8_1:69179269-69179288 | None:intergenic | 35.0% |
| TGAGTACAAACTGTATAGAG+TGG | - | chr8_1:69179450-69179469 | None:intergenic | 35.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr8_1:69177088-69177107 | None:intergenic | 40.0% | |
| ! | CACACAACCTCTGTGTTTTT+CGG | + | chr8_1:69177431-69177450 | Msa1210330:five_prime_UTR | 40.0% |
| ! | GATTTTCCGGTCGAATTTGA+TGG | + | chr8_1:69177523-69177542 | Msa1210330:CDS | 40.0% |
| ATTCCTCCATCAAATTCGAC+CGG | - | chr8_1:69177532-69177551 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCTCTCCAGTTTT+TGG | + | chr8_1:69177768-69177787 | Msa1210330:CDS | 40.0% |
| ! | AGAAGAGCTCTCCAGTTTTT+GGG | + | chr8_1:69177769-69177788 | Msa1210330:CDS | 40.0% |
| AATTCATATCCTGTCATCCC+AGG | - | chr8_1:69177967-69177986 | None:intergenic | 40.0% | |
| AATAGGAGCTTAACTGGATG+GGG | - | chr8_1:69178375-69178394 | None:intergenic | 40.0% | |
| CAATAGGAGCTTAACTGGAT+GGG | - | chr8_1:69178376-69178395 | None:intergenic | 40.0% | |
| TCAATAGGAGCTTAACTGGA+TGG | - | chr8_1:69178377-69178396 | None:intergenic | 40.0% | |
| GTGTGGATCCCAAATAGATA+TGG | + | chr8_1:69178498-69178517 | Msa1210330:intron | 40.0% | |
| TGGATCCCAAATAGATATGG+AGG | + | chr8_1:69178501-69178520 | Msa1210330:intron | 40.0% | |
| CTTACGCCTCCATATCTATT+TGG | - | chr8_1:69178510-69178529 | None:intergenic | 40.0% | |
| ! | AATAGATATGGAGGCGTAAG+TGG | + | chr8_1:69178510-69178529 | Msa1210330:intron | 40.0% |
| !! | GCTGGGTTGTGTTTTATTGA+GGG | - | chr8_1:69178677-69178696 | None:intergenic | 40.0% |
| !! | AGCTGGGTTGTGTTTTATTG+AGG | - | chr8_1:69178678-69178697 | None:intergenic | 40.0% |
| ! | CTGATTCGAGTTAAAAGAGC+TGG | - | chr8_1:69178695-69178714 | None:intergenic | 40.0% |
| TGTCGAAAGTTGTTCTTGCT+AGG | - | chr8_1:69179039-69179058 | None:intergenic | 40.0% | |
| ! | ACTAATTTGCAGGTGTTTGG+AGG | + | chr8_1:69179106-69179125 | Msa1210330:intron | 40.0% |
| !! | GATAATGTTGATGGCGAAAG+TGG | - | chr8_1:69179335-69179354 | None:intergenic | 40.0% |
| GTCAAGTAATATGGGACGGA+GGG | - | chr8_1:69177313-69177332 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | - | chr8_1:69177106-69177125 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr8_1:69177313-69177332 | Msa1210330:intron | 45.0% | |
| TTTCCGGTCGAATTTGATGG+AGG | + | chr8_1:69177526-69177545 | Msa1210330:CDS | 45.0% | |
| TTGATGGAGGAATCACCTTC+AGG | + | chr8_1:69177539-69177558 | Msa1210330:CDS | 45.0% | |
| !!! | AGCTCTCCAGTTTTTGGGAT+TGG | + | chr8_1:69177774-69177793 | Msa1210330:CDS | 45.0% |
| !!! | CTCCAGTTTTTGGGATTGGA+TGG | + | chr8_1:69177778-69177797 | Msa1210330:CDS | 45.0% |
| CTCCATCCAATCCCAAAAAC+TGG | - | chr8_1:69177783-69177802 | None:intergenic | 45.0% | |
| GATGGAGAGAACAGTGATGT+TGG | + | chr8_1:69177796-69177815 | Msa1210330:CDS | 45.0% | |
| !! | ATGACGGATTATTCCATGCC+TGG | + | chr8_1:69177946-69177965 | Msa1210330:CDS | 45.0% |
| !! | TGACGGATTATTCCATGCCT+GGG | + | chr8_1:69177947-69177966 | Msa1210330:CDS | 45.0% |
| ATCCAATCTGCCACCTAATC+AGG | + | chr8_1:69178462-69178481 | Msa1210330:intron | 45.0% | |
| TTCCTGATTAGGTGGCAGAT+TGG | - | chr8_1:69178467-69178486 | None:intergenic | 45.0% | |
| ATTTGCAGGTGTTTGGAGGA+AGG | + | chr8_1:69179110-69179129 | Msa1210330:intron | 45.0% | |
| CATCATGAGAGGTGAAGTGA+AGG | + | chr8_1:69179193-69179212 | Msa1210330:CDS | 45.0% | |
| ATGAGAGGTGAAGTGAAGGA+TGG | + | chr8_1:69179197-69179216 | Msa1210330:CDS | 45.0% | |
| GGATCACATGAATGACGCAT+TGG | - | chr8_1:69179293-69179312 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTGAAATTTTATAT+TGG | + | chr8_1:69178073-69178092 | Msa1210330:intron | 5.0% |
| GGTCAAGTAATATGGGACGG+AGG | - | chr8_1:69177312-69177331 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr8_1:69177312-69177331 | Msa1210330:intron | 50.0% | |
| ATTCGACCGGAAAATCTCGC+CGG | - | chr8_1:69177519-69177538 | None:intergenic | 50.0% | |
| AGGAATCACCTTCAGGTGCA+GGG | + | chr8_1:69177546-69177565 | Msa1210330:CDS | 50.0% | |
| TATTCCATGCCTGGGATGAC+AGG | + | chr8_1:69177955-69177974 | Msa1210330:CDS | 50.0% | |
| ATATCCTGTCATCCCAGGCA+TGG | - | chr8_1:69177962-69177981 | None:intergenic | 50.0% | |
| TCAGACGACATGATCACCAC+TGG | - | chr8_1:69178172-69178191 | None:intergenic | 50.0% | |
| GAAGGGCTAACACAGATCCA+TGG | - | chr8_1:69178557-69178576 | None:intergenic | 50.0% | |
| AGTGGTGAGAACACTGACGA+TGG | - | chr8_1:69179317-69179336 | None:intergenic | 50.0% | |
| !! | CAGTTTGTTATGGCTGCCGC+CGG | + | chr8_1:69177497-69177516 | Msa1210330:exon | 55.0% |
| GAGGAATCACCTTCAGGTGC+AGG | + | chr8_1:69177545-69177564 | Msa1210330:CDS | 55.0% | |
| GGAATCACCTTCAGGTGCAG+GGG | + | chr8_1:69177547-69177566 | Msa1210330:CDS | 55.0% | |
| TGCAATTCCCCTGCACCTGA+AGG | - | chr8_1:69177557-69177576 | None:intergenic | 55.0% | |
| GTTATGGTGGCAGGGTGTGA+AGG | + | chr8_1:69177912-69177931 | Msa1210330:intron | 55.0% | |
| CAGGTGTTTGGAGGAAGGAG+CGG | + | chr8_1:69179115-69179134 | Msa1210330:intron | 55.0% | |
| GGTGAGAACACTGACGATGG+CGG | - | chr8_1:69179314-69179333 | None:intergenic | 55.0% | |
| GTGTTTGGAGGAAGGAGCGG+AGG | + | chr8_1:69179118-69179137 | Msa1210330:CDS | 60.0% | |
| ! | CTGCCGCCGGCGAGATTTTC+CGG | + | chr8_1:69177510-69177529 | Msa1210330:CDS | 65.0% |
| CGACCGGAAAATCTCGCCGG+CGG | - | chr8_1:69177516-69177535 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 69177023 | 69179543 | 69177023 | ID=Msa1210330;Name=Msa1210330 |
| chr8_1 | mRNA | 69177023 | 69179543 | 69177023 | ID=Msa1210330-mRNA-1;Parent=Msa1210330;Name=Msa1210330-mRNA-1;_AED=0.18;_eAED=0.18;_QI=225|1|0.83|1|0.8|0.66|6|167|210 |
| chr8_1 | exon | 69177023 | 69177082 | 69177023 | ID=Msa1210330-mRNA-1:exon:23106;Parent=Msa1210330-mRNA-1 |
| chr8_1 | exon | 69177341 | 69177650 | 69177341 | ID=Msa1210330-mRNA-1:exon:23107;Parent=Msa1210330-mRNA-1 |
| chr8_1 | exon | 69177749 | 69177825 | 69177749 | ID=Msa1210330-mRNA-1:exon:23108;Parent=Msa1210330-mRNA-1 |
| chr8_1 | exon | 69177925 | 69178002 | 69177925 | ID=Msa1210330-mRNA-1:exon:23109;Parent=Msa1210330-mRNA-1 |
| chr8_1 | exon | 69178142 | 69178215 | 69178142 | ID=Msa1210330-mRNA-1:exon:23110;Parent=Msa1210330-mRNA-1 |
| chr8_1 | exon | 69179118 | 69179543 | 69179118 | ID=Msa1210330-mRNA-1:exon:23111;Parent=Msa1210330-mRNA-1 |
| chr8_1 | five_prime_UTR | 69177023 | 69177082 | 69177023 | ID=Msa1210330-mRNA-1:five_prime_utr;Parent=Msa1210330-mRNA-1 |
| chr8_1 | five_prime_UTR | 69177341 | 69177505 | 69177341 | ID=Msa1210330-mRNA-1:five_prime_utr;Parent=Msa1210330-mRNA-1 |
| chr8_1 | CDS | 69177506 | 69177650 | 69177506 | ID=Msa1210330-mRNA-1:cds;Parent=Msa1210330-mRNA-1 |
| chr8_1 | CDS | 69177749 | 69177825 | 69177749 | ID=Msa1210330-mRNA-1:cds;Parent=Msa1210330-mRNA-1 |
| chr8_1 | CDS | 69177925 | 69178002 | 69177925 | ID=Msa1210330-mRNA-1:cds;Parent=Msa1210330-mRNA-1 |
| chr8_1 | CDS | 69178142 | 69178215 | 69178142 | ID=Msa1210330-mRNA-1:cds;Parent=Msa1210330-mRNA-1 |
| chr8_1 | CDS | 69179118 | 69179376 | 69179118 | ID=Msa1210330-mRNA-1:cds;Parent=Msa1210330-mRNA-1 |
| chr8_1 | three_prime_UTR | 69179377 | 69179543 | 69179377 | ID=Msa1210330-mRNA-1:three_prime_utr;Parent=Msa1210330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
