AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210340 MtrunA17_Chr4g0059601 93.966 348 19 2 1 346 1 348 0.0 552
Msa1210340 MtrunA17_Chr6g0451991 44.013 309 124 12 22 317 14 286 3.53e-57 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210340 AT5G62910.1 44.199 362 145 12 1 343 1 324 9.63e-68 216
Msa1210340 AT5G62910.2 44.199 362 145 12 1 343 1 324 9.63e-68 216
Msa1210340 AT3G48070.1 44.986 349 159 8 1 346 1 319 2.13e-64 207
Msa1210340 AT3G48070.2 44.828 348 159 8 1 345 1 318 1.41e-63 206
Msa1210340 AT3G48070.3 46.429 252 108 6 96 345 43 269 2.75e-43 152
Msa1210340 AT1G74870.1 31.169 308 130 9 22 317 21 258 2.83e-27 108

Find 137 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATCGTCTTCACAAATT+AGG 0.123066 8_1:-69194635 Msa1210340:five_prime_UTR
CCTCCAAGCTTTGCCATTAT+TGG 0.149479 8_1:+69193727 None:intergenic
TTGTTTCTCATTTCATCTTA+TGG 0.216723 8_1:-69193209 Msa1210340:three_prime_UTR
ATTCAATACATTGAAATAAA+TGG 0.224114 8_1:-69193128 Msa1210340:three_prime_UTR
ATGACTAATTGTTTGGATTT+AGG 0.231862 8_1:-69193797 Msa1210340:CDS
AGTAGTGGTGGGTGTTTCTC+TGG 0.244371 8_1:-69193986 Msa1210340:CDS
TCTATCGTCTTCACAAATTA+GGG 0.279268 8_1:-69194634 Msa1210340:five_prime_UTR
ACCCTCTTTCTGAGGCAAAA+AGG 0.289977 8_1:-69194728 Msa1210340:five_prime_UTR
CAATCAAACAACGATGGAAT+TGG 0.290568 8_1:+69193039 None:intergenic
CTTCAATTTCGCGGACCTAT+TGG 0.323866 8_1:+69194402 None:intergenic
GAGCAGGATGCTCGTTGTCC+TGG 0.324362 8_1:-69193491 Msa1210340:CDS
TCAAGATCCTCACAGCAAAT+TGG 0.334616 8_1:+69193587 None:intergenic
AGTTAGAGAGATAACGAAAA+TGG 0.337044 8_1:+69194677 None:intergenic
CCACACAACACACTACTATT+AGG 0.338725 8_1:+69194073 None:intergenic
TTCATAGGTCTAGTTGGTTT+AGG 0.341217 8_1:-69193263 Msa1210340:three_prime_UTR
TTGTTTGGATTTAGGATGTC+TGG 0.342987 8_1:-69193789 Msa1210340:CDS
GTGTTGTGTGGTAATGATTC+CGG 0.352982 8_1:-69194061 Msa1210340:CDS
AATGTGAAGTGGAAGCTTTA+AGG 0.357114 8_1:+69193082 None:intergenic
CGTTCCACCACTCCCTGGTT+TGG 0.368101 8_1:+69193763 None:intergenic
CTGTGAGGATCTTGATTTAA+CGG 0.370410 8_1:-69193579 Msa1210340:CDS
ATGTGAAGTGGAAGCTTTAA+GGG 0.379852 8_1:+69193083 None:intergenic
ATGTGAAATGACTAATTGTT+TGG 0.385906 8_1:-69193804 Msa1210340:CDS
AAGAAGAAGGGTTGCAAGGA+TGG 0.391810 8_1:-69194250 Msa1210340:CDS
ACTATGCTGCTTTGACAGAT+TGG 0.398062 8_1:+69193673 None:intergenic
TTCATTAGTTGTGTATGCTT+TGG 0.399843 8_1:-69193345 Msa1210340:three_prime_UTR
CTCACAGCAAATTGGACAAT+TGG 0.402448 8_1:+69193595 None:intergenic
CCACAAGAGGATTCTTGAGC+AGG 0.406130 8_1:-69193507 Msa1210340:CDS
CCCTCCTACAAAACGTGGAT+TGG 0.407656 8_1:+69193646 None:intergenic
ATGATGGATGCTTGGATGAT+TGG 0.408221 8_1:-69193907 Msa1210340:CDS
GAAACAGAGCAAACGTGAAT+TGG 0.411752 8_1:-69194188 Msa1210340:CDS
GTTCCTCGGACTTCCAATAA+TGG 0.418163 8_1:-69193740 Msa1210340:CDS
GAAGGGTTGCAAGGATGGAT+TGG 0.423739 8_1:-69194245 Msa1210340:CDS
TGATGGATGCTTGGATGATT+GGG 0.423751 8_1:-69193906 Msa1210340:CDS
ACACTACTATTAGGACTGAT+AGG 0.429535 8_1:+69194082 None:intergenic
AGAAGTAGAACATGAGGAGG+AGG 0.433655 8_1:-69193933 Msa1210340:CDS
CCAATAATGGCAAAGCTTGG+AGG 0.445248 8_1:-69193727 Msa1210340:CDS
CCTCCTACAAAACGTGGATT+GGG 0.447871 8_1:+69193647 None:intergenic
CGTTTGCTCTGTTTCCCCAC+CGG 0.450401 8_1:+69194196 None:intergenic
GTGTTAGCGGCGGAAGGAAT+CGG 0.452634 8_1:+69194540 None:intergenic
GGATGAACCCGTTGTGAAAA+CGG 0.455722 8_1:-69193831 Msa1210340:CDS
CTATGCTGCTTTGACAGATT+GGG 0.456356 8_1:+69193674 None:intergenic
AGCAGGATGCTCGTTGTCCT+GGG 0.459006 8_1:-69193490 Msa1210340:CDS
TGAAAATTGTAGCAAAAGAA+AGG 0.460182 8_1:-69194790 None:intergenic
GCCAGGATTCTTGGTGTTAG+CGG 0.468562 8_1:+69194527 None:intergenic
AGTAGTAGTTCTAGTAGTGG+TGG 0.477973 8_1:-69193998 Msa1210340:CDS
TGTTGTGTGGTAATGATTCC+GGG 0.481160 8_1:-69194060 Msa1210340:CDS
TTCAGGTGCGGTGAAGAAGA+AGG 0.484533 8_1:-69194263 Msa1210340:intron
ATGCTCGTTGTCCTGGGTGC+AGG 0.487799 8_1:-69193484 Msa1210340:CDS
GGATGTCTGGATTCCAAACC+AGG 0.491547 8_1:-69193776 Msa1210340:CDS
CTTATACTGCTTCAATTTCG+CGG 0.494651 8_1:+69194393 None:intergenic
GCCGCTAACACCAAGAATCC+TGG 0.495843 8_1:-69194528 Msa1210340:CDS
TGAAACCATGGCTGAACCGT+TGG 0.497561 8_1:+69194581 None:intergenic
CAAACGTGAATTGGAGAAAG+TGG 0.497957 8_1:-69194179 Msa1210340:CDS
TGGCACAGACATGCGAGACC+AGG 0.500008 8_1:+69193619 None:intergenic
GGAGGATGATGATGGATGCT+TGG 0.501682 8_1:-69193915 Msa1210340:CDS
TTGCCTCAGAAAGAGGGTCC+AGG 0.501966 8_1:+69194733 None:intergenic
GTAGTGGTGGGTGTTTCTCT+GGG 0.502450 8_1:-69193985 Msa1210340:CDS
GAAACCATGGCTGAACCGTT+GGG 0.508338 8_1:+69194582 None:intergenic
TGATGAAGAAGTAGAACATG+AGG 0.511024 8_1:-69193939 Msa1210340:CDS
TGTCCACGTGCCGTCGTCAC+CGG 0.513705 8_1:-69194215 Msa1210340:CDS
CATGAGGAGGAGGATGATGA+TGG 0.519831 8_1:-69193923 Msa1210340:CDS
GACAGATTGGGCAGAGTCTG+AGG 0.522552 8_1:+69193686 None:intergenic
CTTGGATGATTGGGAGGCTG+TGG 0.524760 8_1:-69193897 Msa1210340:CDS
ATGGAGGTAGCCTTACCCTT+CGG 0.524822 8_1:-69193418 Msa1210340:CDS
CCACGTGCCGTCGTCACCGG+TGG 0.526195 8_1:-69194212 Msa1210340:CDS
GAAAATTGTAGCAAAAGAAA+GGG 0.526590 8_1:-69194789 None:intergenic
CAATAATGGCAAAGCTTGGA+GGG 0.527398 8_1:-69193726 Msa1210340:CDS
CTCTGGGAATATTACAGAAG+AGG 0.529198 8_1:-69193969 Msa1210340:CDS
CACGTGCCGTCGTCACCGGT+GGG 0.533815 8_1:-69194211 Msa1210340:CDS
TGAAGAAGTAGAACATGAGG+AGG 0.536990 8_1:-69193936 Msa1210340:CDS
ACTATAGACAAAATGTGAAG+TGG 0.540347 8_1:+69193071 None:intergenic
GGAGTGGTGGAACGGTTCCT+CGG 0.542795 8_1:-69193754 Msa1210340:CDS
CCACCGGTGACGACGGCACG+TGG 0.543888 8_1:+69194212 None:intergenic
CTTCCAATAATGGCAAAGCT+TGG 0.544022 8_1:-69193730 Msa1210340:CDS
TTCTTGGTGTTAGCGGCGGA+AGG 0.547431 8_1:+69194534 None:intergenic
TCAGGTGCGGTGAAGAAGAA+GGG 0.549021 8_1:-69194262 Msa1210340:intron
GGCGATTGAATCTGAAACCA+TGG 0.552929 8_1:+69194569 None:intergenic
AATTGGAGAAAGTGGGGACG+AGG 0.553428 8_1:-69194171 Msa1210340:CDS
TTGATGCGCGTCGTGAACAA+TGG 0.554675 8_1:-69194369 Msa1210340:CDS
GGAACCGTTCCACCACTCCC+TGG 0.559516 8_1:+69193758 None:intergenic
AACGAGCCAACCGAAGGGTA+AGG 0.560319 8_1:+69193408 None:intergenic
TTAAGGGAATATGCCACGGC+AGG 0.562122 8_1:+69193099 None:intergenic
ACTACCAGTGAAATTCGTCC+CGG 0.566478 8_1:+69194042 None:intergenic
GATTCCGGGACGAATTTCAC+TGG 0.570168 8_1:-69194046 Msa1210340:CDS
GGCTCTATGCTTCTCATCGG+CGG 0.570378 8_1:+69193862 None:intergenic
CTGGATTCCAAACCAGGGAG+TGG 0.570955 8_1:-69193770 Msa1210340:CDS
ACACTTGCTTCTGTCTCGAT+AGG 0.572811 8_1:+69193443 None:intergenic
TTCACTGGTAGTAGCAGTGG+TGG 0.572834 8_1:-69194031 Msa1210340:CDS
GTAGTAGTTCTAGTAGTGGT+GGG 0.574175 8_1:-69193997 Msa1210340:CDS
AAATCCCAACGGTTCAGCCA+TGG 0.574819 8_1:-69194586 Msa1210340:exon
GTGGGGACGAGGCGTAGAGG+TGG 0.576855 8_1:-69194160 Msa1210340:CDS
CAGCAAATTGGACAATTGGA+TGG 0.582722 8_1:+69193599 None:intergenic
GAGACAGAAGCAAGTGTGCA+TGG 0.583579 8_1:-69193437 Msa1210340:CDS
GACGAGGCGTAGAGGTGGAG+AGG 0.585813 8_1:-69194155 Msa1210340:CDS
AAACGTGAATTGGAGAAAGT+GGG 0.587309 8_1:-69194178 Msa1210340:CDS
AGGTAGCCTTACCCTTCGGT+TGG 0.588790 8_1:-69193414 Msa1210340:CDS
GAAGCATAGAGCCTCTTCAC+AGG 0.591659 8_1:-69193852 Msa1210340:CDS
ACAGATTGGGCAGAGTCTGA+GGG 0.592006 8_1:+69193687 None:intergenic
GATTCCAAACCAGGGAGTGG+TGG 0.592053 8_1:-69193767 Msa1210340:CDS
CCACCTGGACCCTCTTTCTG+AGG 0.597398 8_1:-69194736 Msa1210340:five_prime_UTR
AGGATTCTTGGTGTTAGCGG+CGG 0.602387 8_1:+69194530 None:intergenic
AGCAGTAGTAGTTCTAGTAG+TGG 0.604603 8_1:-69194001 Msa1210340:CDS
CGTGAACAATGGCTATCTCA+AGG 0.607296 8_1:-69194358 Msa1210340:intron
AACGGGTTCATCCTGTGAAG+AGG 0.611313 8_1:+69193841 None:intergenic
TGTTGGTATGTGAATACGTA+AGG 0.613041 8_1:-69193161 Msa1210340:three_prime_UTR
CCTGCTCAAGAATCCTCTTG+TGG 0.614452 8_1:+69193507 None:intergenic
AGCTTTAAGGGAATATGCCA+CGG 0.615390 8_1:+69193095 None:intergenic
GTTCTGTCAGCATGATCGAA+AGG 0.622260 8_1:-69193388 Msa1210340:CDS
AGAGGCTCTATGCTTCTCAT+CGG 0.622264 8_1:+69193859 None:intergenic
GGCACAGACATGCGAGACCA+GGG 0.623059 8_1:+69193620 None:intergenic
TGACAGAACGAGCCAACCGA+AGG 0.625301 8_1:+69193402 None:intergenic
AGCCGAAAACCACAATTGCA+CGG 0.626352 8_1:+69193542 None:intergenic
TTGCCATTATTGGAAGTCCG+AGG 0.630357 8_1:+69193737 None:intergenic
AAAGTGGGGACGAGGCGTAG+AGG 0.631420 8_1:-69194163 Msa1210340:CDS
CAAACCAGGGAGTGGTGGAA+CGG 0.635703 8_1:-69193762 Msa1210340:CDS
TCATATTGCTTCCTGCACCC+AGG 0.637371 8_1:+69193473 None:intergenic
AATTTCACTGGTAGTAGCAG+TGG 0.639931 8_1:-69194034 Msa1210340:CDS
GAAATCCGATAAAATCCACC+TGG 0.644433 8_1:-69194751 Msa1210340:five_prime_UTR
GAGATAACGAAAATGGATCA+CGG 0.646784 8_1:+69194684 None:intergenic
CAATTGTCCAATTTGCTGTG+AGG 0.649475 8_1:-69193594 Msa1210340:CDS
CCTCAGAAAGAGGGTCCAGG+TGG 0.650167 8_1:+69194736 None:intergenic
ACGTGCCGTCGTCACCGGTG+GGG 0.652762 8_1:-69194210 Msa1210340:CDS
GGTGAAGAAGAAGGGTTGCA+AGG 0.653357 8_1:-69194254 Msa1210340:CDS
GGCGGAAGGAATCGGAACGG+CGG 0.658597 8_1:+69194548 None:intergenic
GGAACCCCTCCTACAAAACG+TGG 0.666447 8_1:+69193641 None:intergenic
GACAGAACGAGCCAACCGAA+GGG 0.671376 8_1:+69193403 None:intergenic
TGGATGCTTGGATGATTGGG+AGG 0.674598 8_1:-69193903 Msa1210340:CDS
AACGTGAATTGGAGAAAGTG+GGG 0.676724 8_1:-69194177 Msa1210340:CDS
TAAATGGTTACATCCTGCCG+TGG 0.678350 8_1:-69193112 Msa1210340:three_prime_UTR
AGCGGCGGAAGGAATCGGAA+CGG 0.682697 8_1:+69194545 None:intergenic
TGGTATGTGAATACGTAAGG+TGG 0.685753 8_1:-69193158 Msa1210340:three_prime_UTR
GATTGGGCAGAGTCTGAGGG+CGG 0.696323 8_1:+69193690 None:intergenic
TTAATGTAGAATACTCATGT+TGG 0.699610 8_1:-69193178 Msa1210340:three_prime_UTR
ACAGAAGCAAGTGTGCATGG+AGG 0.724066 8_1:-69193434 Msa1210340:CDS
GATGTCTGGATTCCAAACCA+GGG 0.730131 8_1:-69193775 Msa1210340:CDS
CCTAATAGTAGTGTGTTGTG+TGG 0.734395 8_1:-69194073 Msa1210340:CDS
GGACTGATAGGACTGTTCGA+CGG 0.740618 8_1:+69194094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_1:69193464-69193483 Msa1210340:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_1:69194625-69194644 Msa1210340:five_prime_UTR 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_1:69193464-69193483 Msa1210340:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_1:69194625-69194644 Msa1210340:five_prime_UTR 15.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_1:69192996-69193015 None:intergenic 25.0%
!! AATTCTATTTTCAGACCAAT+AGG - chr8_1:69193336-69193355 Msa1210340:three_prime_UTR 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_1:69193436-69193455 Msa1210340:CDS 25.0%
!!! TATCTTTGTTATGGTTTTTC+AGG - chr8_1:69193473-69193492 Msa1210340:CDS 25.0%
! ATGTGAAATGACTAATTGTT+TGG - chr8_1:69193949-69193968 Msa1210340:CDS 25.0%
! ATGACTAATTGTTTGGATTT+AGG - chr8_1:69193956-69193975 Msa1210340:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_1:69194475-69194494 Msa1210340:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_1:69194544-69194563 Msa1210340:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_1:69194575-69194594 Msa1210340:exon 25.0%
!! AATTTTCAATCAAACAACGA+TGG + chr8_1:69194723-69194742 None:intergenic 25.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_1:69192996-69193015 None:intergenic 25.0%
!! AATTCTATTTTCAGACCAAT+AGG - chr8_1:69193336-69193355 Msa1210340:three_prime_UTR 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_1:69193436-69193455 Msa1210340:CDS 25.0%
!!! TATCTTTGTTATGGTTTTTC+AGG - chr8_1:69193473-69193492 Msa1210340:CDS 25.0%
! ATGTGAAATGACTAATTGTT+TGG - chr8_1:69193949-69193968 Msa1210340:CDS 25.0%
! ATGACTAATTGTTTGGATTT+AGG - chr8_1:69193956-69193975 Msa1210340:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_1:69194475-69194494 Msa1210340:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_1:69194544-69194563 Msa1210340:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_1:69194575-69194594 Msa1210340:exon 25.0%
!! AATTTTCAATCAAACAACGA+TGG + chr8_1:69194723-69194742 None:intergenic 25.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_1:69193079-69193098 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_1:69193118-69193137 Msa1210340:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_1:69193119-69193138 Msa1210340:three_prime_UTR 30.0%
TTCGAAAAATCAAATCCCAA+CGG - chr8_1:69193156-69193175 Msa1210340:three_prime_UTR 30.0%
TTCATTAGTTGTGTATGCTT+TGG - chr8_1:69194408-69194427 Msa1210340:intron 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_1:69194484-69194503 Msa1210340:intron 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_1:69194685-69194704 None:intergenic 30.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_1:69193079-69193098 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_1:69193118-69193137 Msa1210340:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_1:69193119-69193138 Msa1210340:three_prime_UTR 30.0%
TTCGAAAAATCAAATCCCAA+CGG - chr8_1:69193156-69193175 Msa1210340:three_prime_UTR 30.0%
TTCATTAGTTGTGTATGCTT+TGG - chr8_1:69194408-69194427 Msa1210340:intron 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_1:69194484-69194503 Msa1210340:intron 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_1:69194685-69194704 None:intergenic 30.0%
GAGATAACGAAAATGGATCA+CGG + chr8_1:69193072-69193091 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_1:69193363-69193382 None:intergenic 35.0%
!!! TTGTTATGGTTTTTCAGGTG+CGG - chr8_1:69193478-69193497 Msa1210340:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_1:69193575-69193594 Msa1210340:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_1:69193674-69193693 None:intergenic 35.0%
TGATGAAGAAGTAGAACATG+AGG - chr8_1:69193814-69193833 Msa1210340:CDS 35.0%
! ACATGAATCCGTTTTCACAA+CGG + chr8_1:69193933-69193952 None:intergenic 35.0%
! TTGTTTGGATTTAGGATGTC+TGG - chr8_1:69193964-69193983 Msa1210340:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_1:69194174-69194193 Msa1210340:CDS 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_1:69194456-69194475 Msa1210340:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_1:69194490-69194509 Msa1210340:intron 35.0%
TGTTGGTATGTGAATACGTA+AGG - chr8_1:69194592-69194611 Msa1210340:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_1:69194673-69194692 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_1:69194674-69194693 None:intergenic 35.0%
CAATCAAACAACGATGGAAT+TGG + chr8_1:69194717-69194736 None:intergenic 35.0%
GAGATAACGAAAATGGATCA+CGG + chr8_1:69193072-69193091 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_1:69193363-69193382 None:intergenic 35.0%
!!! TTGTTATGGTTTTTCAGGTG+CGG - chr8_1:69193478-69193497 Msa1210340:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_1:69193575-69193594 Msa1210340:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_1:69193674-69193693 None:intergenic 35.0%
TGATGAAGAAGTAGAACATG+AGG - chr8_1:69193814-69193833 Msa1210340:CDS 35.0%
! ACATGAATCCGTTTTCACAA+CGG + chr8_1:69193933-69193952 None:intergenic 35.0%
! TTGTTTGGATTTAGGATGTC+TGG - chr8_1:69193964-69193983 Msa1210340:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_1:69194174-69194193 Msa1210340:CDS 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_1:69194456-69194475 Msa1210340:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_1:69194490-69194509 Msa1210340:intron 35.0%
TGTTGGTATGTGAATACGTA+AGG - chr8_1:69194592-69194611 Msa1210340:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_1:69194673-69194692 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_1:69194674-69194693 None:intergenic 35.0%
CAATCAAACAACGATGGAAT+TGG + chr8_1:69194717-69194736 None:intergenic 35.0%
GAAATCCGATAAAATCCACC+TGG - chr8_1:69193002-69193021 Msa1210340:three_prime_UTR 40.0%
! CTTCTTTTTGCCAGGATTCT+TGG + chr8_1:69193238-69193257 None:intergenic 40.0%
AGAATCCTGGCAAAAAGAAG+AGG - chr8_1:69193238-69193257 Msa1210340:three_prime_UTR 40.0%
GAATCCTGGCAAAAAGAAGA+GGG - chr8_1:69193239-69193258 Msa1210340:three_prime_UTR 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_1:69193565-69193584 Msa1210340:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_1:69193574-69193593 Msa1210340:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_1:69193576-69193595 Msa1210340:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_1:69193683-69193702 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_1:69193680-69193699 Msa1210340:CDS 40.0%
! GTGTTGTGTGGTAATGATTC+CGG - chr8_1:69193692-69193711 Msa1210340:CDS 40.0%
! TGTTGTGTGGTAATGATTCC+GGG - chr8_1:69193693-69193712 Msa1210340:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_1:69193719-69193738 Msa1210340:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_1:69193752-69193771 Msa1210340:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_1:69193755-69193774 Msa1210340:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_1:69193756-69193775 Msa1210340:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_1:69193784-69193803 Msa1210340:CDS 40.0%
TGAAGAAGTAGAACATGAGG+AGG - chr8_1:69193817-69193836 Msa1210340:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_1:69193846-69193865 Msa1210340:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_1:69193847-69193866 Msa1210340:CDS 40.0%
! CATGAATCCGTTTTCACAAC+GGG + chr8_1:69193932-69193951 None:intergenic 40.0%
CTTCCAATAATGGCAAAGCT+TGG - chr8_1:69194023-69194042 Msa1210340:CDS 40.0%
CAATAATGGCAAAGCTTGGA+GGG - chr8_1:69194027-69194046 Msa1210340:CDS 40.0%
!! CTATGCTGCTTTGACAGATT+GGG + chr8_1:69194082-69194101 None:intergenic 40.0%
!! ACTATGCTGCTTTGACAGAT+TGG + chr8_1:69194083-69194102 None:intergenic 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_1:69194157-69194176 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_1:69194161-69194180 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_1:69194159-69194178 Msa1210340:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_1:69194169-69194188 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_1:69194202-69194221 Msa1210340:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_1:69194209-69194228 Msa1210340:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_1:69194452-69194471 Msa1210340:intron 40.0%
TGGTATGTGAATACGTAAGG+TGG - chr8_1:69194595-69194614 Msa1210340:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+CGG + chr8_1:69194661-69194680 None:intergenic 40.0%
GAAATCCGATAAAATCCACC+TGG - chr8_1:69193002-69193021 Msa1210340:three_prime_UTR 40.0%
! CTTCTTTTTGCCAGGATTCT+TGG + chr8_1:69193238-69193257 None:intergenic 40.0%
AGAATCCTGGCAAAAAGAAG+AGG - chr8_1:69193238-69193257 Msa1210340:three_prime_UTR 40.0%
GAATCCTGGCAAAAAGAAGA+GGG - chr8_1:69193239-69193258 Msa1210340:three_prime_UTR 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_1:69193565-69193584 Msa1210340:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_1:69193574-69193593 Msa1210340:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_1:69193576-69193595 Msa1210340:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_1:69193683-69193702 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_1:69193680-69193699 Msa1210340:CDS 40.0%
! GTGTTGTGTGGTAATGATTC+CGG - chr8_1:69193692-69193711 Msa1210340:CDS 40.0%
! TGTTGTGTGGTAATGATTCC+GGG - chr8_1:69193693-69193712 Msa1210340:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_1:69193719-69193738 Msa1210340:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_1:69193752-69193771 Msa1210340:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_1:69193755-69193774 Msa1210340:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_1:69193756-69193775 Msa1210340:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_1:69193784-69193803 Msa1210340:CDS 40.0%
TGAAGAAGTAGAACATGAGG+AGG - chr8_1:69193817-69193836 Msa1210340:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_1:69193846-69193865 Msa1210340:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_1:69193847-69193866 Msa1210340:CDS 40.0%
! CATGAATCCGTTTTCACAAC+GGG + chr8_1:69193932-69193951 None:intergenic 40.0%
CTTCCAATAATGGCAAAGCT+TGG - chr8_1:69194023-69194042 Msa1210340:CDS 40.0%
CAATAATGGCAAAGCTTGGA+GGG - chr8_1:69194027-69194046 Msa1210340:CDS 40.0%
!! CTATGCTGCTTTGACAGATT+GGG + chr8_1:69194082-69194101 None:intergenic 40.0%
!! ACTATGCTGCTTTGACAGAT+TGG + chr8_1:69194083-69194102 None:intergenic 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_1:69194157-69194176 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_1:69194161-69194180 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_1:69194159-69194178 Msa1210340:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_1:69194169-69194188 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_1:69194202-69194221 Msa1210340:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_1:69194209-69194228 Msa1210340:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_1:69194452-69194471 Msa1210340:intron 40.0%
TGGTATGTGAATACGTAAGG+TGG - chr8_1:69194595-69194614 Msa1210340:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+CGG + chr8_1:69194661-69194680 None:intergenic 40.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_1:69193010-69193029 None:intergenic 45.0%
!! ACCCTCTTTCTGAGGCAAAA+AGG - chr8_1:69193025-69193044 Msa1210340:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAAAGA+GGG + chr8_1:69193029-69193048 None:intergenic 45.0%
!! CCCTCTTTCTGAGGCAAAAA+GGG - chr8_1:69193026-69193045 Msa1210340:three_prime_UTR 45.0%
! GGCGATTGAATCTGAAACCA+TGG + chr8_1:69193187-69193206 None:intergenic 45.0%
! GTTACCCTCTTCTTTTTGCC+AGG + chr8_1:69193246-69193265 None:intergenic 45.0%
CGCGTGAGTTCGAATTAGAA+CGG + chr8_1:69193310-69193329 None:intergenic 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_1:69193354-69193373 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_1:69193395-69193414 Msa1210340:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_1:69193503-69193522 Msa1210340:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_1:69193714-69193733 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_1:69193820-69193839 Msa1210340:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_1:69193897-69193916 None:intergenic 45.0%
GGATGAACCCGTTGTGAAAA+CGG - chr8_1:69193922-69193941 Msa1210340:CDS 45.0%
GATGTCTGGATTCCAAACCA+GGG - chr8_1:69193978-69193997 Msa1210340:CDS 45.0%
GTTCCTCGGACTTCCAATAA+TGG - chr8_1:69194013-69194032 Msa1210340:CDS 45.0%
TTGCCATTATTGGAAGTCCG+AGG + chr8_1:69194019-69194038 None:intergenic 45.0%
CCTCCAAGCTTTGCCATTAT+TGG + chr8_1:69194029-69194048 None:intergenic 45.0%
CCAATAATGGCAAAGCTTGG+AGG - chr8_1:69194026-69194045 Msa1210340:CDS 45.0%
! ATGCCCAATCCACGTTTTGT+AGG - chr8_1:69194103-69194122 Msa1210340:CDS 45.0%
CCTCCTACAAAACGTGGATT+GGG + chr8_1:69194109-69194128 None:intergenic 45.0%
! CCAATCCACGTTTTGTAGGA+GGG - chr8_1:69194107-69194126 Msa1210340:CDS 45.0%
! CAATCCACGTTTTGTAGGAG+GGG - chr8_1:69194108-69194127 Msa1210340:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_1:69194214-69194233 None:intergenic 45.0%
! TCTGTCTCTTTTGCCACAAG+AGG - chr8_1:69194233-69194252 Msa1210340:CDS 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_1:69194313-69194332 None:intergenic 45.0%
GTTCTGTCAGCATGATCGAA+AGG - chr8_1:69194365-69194384 Msa1210340:CDS 45.0%
TAAATGGTTACATCCTGCCG+TGG - chr8_1:69194641-69194660 Msa1210340:five_prime_UTR 45.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_1:69193010-69193029 None:intergenic 45.0%
!! ACCCTCTTTCTGAGGCAAAA+AGG - chr8_1:69193025-69193044 Msa1210340:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAAAGA+GGG + chr8_1:69193029-69193048 None:intergenic 45.0%
!! CCCTCTTTCTGAGGCAAAAA+GGG - chr8_1:69193026-69193045 Msa1210340:three_prime_UTR 45.0%
! GGCGATTGAATCTGAAACCA+TGG + chr8_1:69193187-69193206 None:intergenic 45.0%
! GTTACCCTCTTCTTTTTGCC+AGG + chr8_1:69193246-69193265 None:intergenic 45.0%
CGCGTGAGTTCGAATTAGAA+CGG + chr8_1:69193310-69193329 None:intergenic 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_1:69193354-69193373 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_1:69193395-69193414 Msa1210340:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_1:69193503-69193522 Msa1210340:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_1:69193714-69193733 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_1:69193820-69193839 Msa1210340:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_1:69193897-69193916 None:intergenic 45.0%
GGATGAACCCGTTGTGAAAA+CGG - chr8_1:69193922-69193941 Msa1210340:CDS 45.0%
GATGTCTGGATTCCAAACCA+GGG - chr8_1:69193978-69193997 Msa1210340:CDS 45.0%
GTTCCTCGGACTTCCAATAA+TGG - chr8_1:69194013-69194032 Msa1210340:CDS 45.0%
TTGCCATTATTGGAAGTCCG+AGG + chr8_1:69194019-69194038 None:intergenic 45.0%
CCTCCAAGCTTTGCCATTAT+TGG + chr8_1:69194029-69194048 None:intergenic 45.0%
CCAATAATGGCAAAGCTTGG+AGG - chr8_1:69194026-69194045 Msa1210340:CDS 45.0%
! ATGCCCAATCCACGTTTTGT+AGG - chr8_1:69194103-69194122 Msa1210340:CDS 45.0%
CCTCCTACAAAACGTGGATT+GGG + chr8_1:69194109-69194128 None:intergenic 45.0%
! CCAATCCACGTTTTGTAGGA+GGG - chr8_1:69194107-69194126 Msa1210340:CDS 45.0%
! CAATCCACGTTTTGTAGGAG+GGG - chr8_1:69194108-69194127 Msa1210340:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_1:69194214-69194233 None:intergenic 45.0%
! TCTGTCTCTTTTGCCACAAG+AGG - chr8_1:69194233-69194252 Msa1210340:CDS 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_1:69194313-69194332 None:intergenic 45.0%
GTTCTGTCAGCATGATCGAA+AGG - chr8_1:69194365-69194384 Msa1210340:CDS 45.0%
TAAATGGTTACATCCTGCCG+TGG - chr8_1:69194641-69194660 Msa1210340:five_prime_UTR 45.0%
!! AACAAAAAAAATTATATAAT+CGG + chr8_1:69193285-69193304 None:intergenic 5.0%
!! AACAAAAAAAATTATATAAT+CGG + chr8_1:69193285-69193304 None:intergenic 5.0%
! GCCCTTTTTGCCTCAGAAAG+AGG + chr8_1:69193030-69193049 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_1:69193033-69193052 Msa1210340:three_prime_UTR 50.0%
AAATCCCAACGGTTCAGCCA+TGG - chr8_1:69193167-69193186 Msa1210340:three_prime_UTR 50.0%
GAAACCATGGCTGAACCGTT+GGG + chr8_1:69193174-69193193 None:intergenic 50.0%
TGAAACCATGGCTGAACCGT+TGG + chr8_1:69193175-69193194 None:intergenic 50.0%
!! AGGATTCTTGGTGTTAGCGG+CGG + chr8_1:69193226-69193245 None:intergenic 50.0%
!! GCCAGGATTCTTGGTGTTAG+CGG + chr8_1:69193229-69193248 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_1:69193384-69193403 Msa1210340:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_1:69193490-69193509 Msa1210340:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_1:69193491-69193510 Msa1210340:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_1:69193499-69193518 Msa1210340:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_1:69193508-69193527 Msa1210340:CDS 50.0%
AATTGGAGAAAGTGGGGACG+AGG - chr8_1:69193582-69193601 Msa1210340:CDS 50.0%
GGACTGATAGGACTGTTCGA+CGG + chr8_1:69193662-69193681 None:intergenic 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_1:69193707-69193726 Msa1210340:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_1:69193722-69193741 Msa1210340:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_1:69193767-69193786 Msa1210340:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_1:69193768-69193787 Msa1210340:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_1:69193830-69193849 Msa1210340:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_1:69193838-69193857 Msa1210340:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_1:69193850-69193869 Msa1210340:CDS 50.0%
GAAGCATAGAGCCTCTTCAC+AGG - chr8_1:69193901-69193920 Msa1210340:CDS 50.0%
! AACGGGTTCATCCTGTGAAG+AGG + chr8_1:69193915-69193934 None:intergenic 50.0%
GGATGTCTGGATTCCAAACC+AGG - chr8_1:69193977-69193996 Msa1210340:CDS 50.0%
ACAGATTGGGCAGAGTCTGA+GGG + chr8_1:69194069-69194088 None:intergenic 50.0%
! CCCAATCCACGTTTTGTAGG+AGG - chr8_1:69194106-69194125 Msa1210340:CDS 50.0%
CCCTCCTACAAAACGTGGAT+TGG + chr8_1:69194110-69194129 None:intergenic 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_1:69194249-69194268 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_1:69194246-69194265 Msa1210340:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_1:69194283-69194302 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_1:69194316-69194335 Msa1210340:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_1:69194319-69194338 Msa1210340:intron 50.0%
! ATGGAGGTAGCCTTACCCTT+CGG - chr8_1:69194335-69194354 Msa1210340:intron 50.0%
TTAAGGGAATATGCCACGGC+AGG + chr8_1:69194657-69194676 None:intergenic 50.0%
! GCCCTTTTTGCCTCAGAAAG+AGG + chr8_1:69193030-69193049 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_1:69193033-69193052 Msa1210340:three_prime_UTR 50.0%
AAATCCCAACGGTTCAGCCA+TGG - chr8_1:69193167-69193186 Msa1210340:three_prime_UTR 50.0%
GAAACCATGGCTGAACCGTT+GGG + chr8_1:69193174-69193193 None:intergenic 50.0%
TGAAACCATGGCTGAACCGT+TGG + chr8_1:69193175-69193194 None:intergenic 50.0%
!! AGGATTCTTGGTGTTAGCGG+CGG + chr8_1:69193226-69193245 None:intergenic 50.0%
!! GCCAGGATTCTTGGTGTTAG+CGG + chr8_1:69193229-69193248 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_1:69193384-69193403 Msa1210340:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_1:69193490-69193509 Msa1210340:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_1:69193491-69193510 Msa1210340:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_1:69193499-69193518 Msa1210340:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_1:69193508-69193527 Msa1210340:CDS 50.0%
AATTGGAGAAAGTGGGGACG+AGG - chr8_1:69193582-69193601 Msa1210340:CDS 50.0%
GGACTGATAGGACTGTTCGA+CGG + chr8_1:69193662-69193681 None:intergenic 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_1:69193707-69193726 Msa1210340:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_1:69193722-69193741 Msa1210340:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_1:69193767-69193786 Msa1210340:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_1:69193768-69193787 Msa1210340:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_1:69193830-69193849 Msa1210340:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_1:69193838-69193857 Msa1210340:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_1:69193850-69193869 Msa1210340:CDS 50.0%
GAAGCATAGAGCCTCTTCAC+AGG - chr8_1:69193901-69193920 Msa1210340:CDS 50.0%
! AACGGGTTCATCCTGTGAAG+AGG + chr8_1:69193915-69193934 None:intergenic 50.0%
GGATGTCTGGATTCCAAACC+AGG - chr8_1:69193977-69193996 Msa1210340:CDS 50.0%
ACAGATTGGGCAGAGTCTGA+GGG + chr8_1:69194069-69194088 None:intergenic 50.0%
! CCCAATCCACGTTTTGTAGG+AGG - chr8_1:69194106-69194125 Msa1210340:CDS 50.0%
CCCTCCTACAAAACGTGGAT+TGG + chr8_1:69194110-69194129 None:intergenic 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_1:69194249-69194268 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_1:69194246-69194265 Msa1210340:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_1:69194283-69194302 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_1:69194316-69194335 Msa1210340:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_1:69194319-69194338 Msa1210340:intron 50.0%
! ATGGAGGTAGCCTTACCCTT+CGG - chr8_1:69194335-69194354 Msa1210340:intron 50.0%
TTAAGGGAATATGCCACGGC+AGG + chr8_1:69194657-69194676 None:intergenic 50.0%
TTGCCTCAGAAAGAGGGTCC+AGG + chr8_1:69193023-69193042 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_1:69193216-69193235 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_1:69193222-69193241 None:intergenic 55.0%
GCCGCTAACACCAAGAATCC+TGG - chr8_1:69193225-69193244 Msa1210340:three_prime_UTR 55.0%
CGTTTGCTCTGTTTCCCCAC+CGG + chr8_1:69193560-69193579 None:intergenic 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_1:69193856-69193875 Msa1210340:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_1:69193894-69193913 None:intergenic 55.0%
CTGGATTCCAAACCAGGGAG+TGG - chr8_1:69193983-69194002 Msa1210340:CDS 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_1:69193986-69194005 Msa1210340:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_1:69193991-69194010 Msa1210340:CDS 55.0%
GACAGATTGGGCAGAGTCTG+AGG + chr8_1:69194070-69194089 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_1:69194115-69194134 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_1:69194116-69194135 Msa1210340:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_1:69194263-69194282 Msa1210340:intron 55.0%
! AGGTAGCCTTACCCTTCGGT+TGG - chr8_1:69194339-69194358 Msa1210340:intron 55.0%
AACGAGCCAACCGAAGGGTA+AGG + chr8_1:69194348-69194367 None:intergenic 55.0%
GACAGAACGAGCCAACCGAA+GGG + chr8_1:69194353-69194372 None:intergenic 55.0%
TGACAGAACGAGCCAACCGA+AGG + chr8_1:69194354-69194373 None:intergenic 55.0%
TTGCCTCAGAAAGAGGGTCC+AGG + chr8_1:69193023-69193042 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_1:69193216-69193235 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_1:69193222-69193241 None:intergenic 55.0%
GCCGCTAACACCAAGAATCC+TGG - chr8_1:69193225-69193244 Msa1210340:three_prime_UTR 55.0%
CGTTTGCTCTGTTTCCCCAC+CGG + chr8_1:69193560-69193579 None:intergenic 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_1:69193856-69193875 Msa1210340:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_1:69193894-69193913 None:intergenic 55.0%
CTGGATTCCAAACCAGGGAG+TGG - chr8_1:69193983-69194002 Msa1210340:CDS 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_1:69193986-69194005 Msa1210340:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_1:69193991-69194010 Msa1210340:CDS 55.0%
GACAGATTGGGCAGAGTCTG+AGG + chr8_1:69194070-69194089 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_1:69194115-69194134 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_1:69194116-69194135 Msa1210340:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_1:69194263-69194282 Msa1210340:intron 55.0%
! AGGTAGCCTTACCCTTCGGT+TGG - chr8_1:69194339-69194358 Msa1210340:intron 55.0%
AACGAGCCAACCGAAGGGTA+AGG + chr8_1:69194348-69194367 None:intergenic 55.0%
GACAGAACGAGCCAACCGAA+GGG + chr8_1:69194353-69194372 None:intergenic 55.0%
TGACAGAACGAGCCAACCGA+AGG + chr8_1:69194354-69194373 None:intergenic 55.0%
CCTCAGAAAGAGGGTCCAGG+TGG + chr8_1:69193020-69193039 None:intergenic 60.0%
CCACCTGGACCCTCTTTCTG+AGG - chr8_1:69193017-69193036 Msa1210340:three_prime_UTR 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_1:69193211-69193230 None:intergenic 60.0%
TGTTTCCCCACCGGTGACGA+CGG + chr8_1:69193551-69193570 None:intergenic 60.0%
AAAGTGGGGACGAGGCGTAG+AGG - chr8_1:69193590-69193609 Msa1210340:CDS 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_1:69193993-69194012 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_1:69193999-69194018 Msa1210340:CDS 60.0%
GATTGGGCAGAGTCTGAGGG+CGG + chr8_1:69194066-69194085 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_1:69194136-69194155 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_1:69194137-69194156 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_1:69194262-69194281 Msa1210340:intron 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_1:69194269-69194288 Msa1210340:intron 60.0%
CCTCAGAAAGAGGGTCCAGG+TGG + chr8_1:69193020-69193039 None:intergenic 60.0%
CCACCTGGACCCTCTTTCTG+AGG - chr8_1:69193017-69193036 Msa1210340:three_prime_UTR 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_1:69193211-69193230 None:intergenic 60.0%
TGTTTCCCCACCGGTGACGA+CGG + chr8_1:69193551-69193570 None:intergenic 60.0%
AAAGTGGGGACGAGGCGTAG+AGG - chr8_1:69193590-69193609 Msa1210340:CDS 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_1:69193993-69194012 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_1:69193999-69194018 Msa1210340:CDS 60.0%
GATTGGGCAGAGTCTGAGGG+CGG + chr8_1:69194066-69194085 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_1:69194136-69194155 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_1:69194137-69194156 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_1:69194262-69194281 Msa1210340:intron 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_1:69194269-69194288 Msa1210340:intron 60.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_1:69193208-69193227 None:intergenic 65.0%
TGTCCACGTGCCGTCGTCAC+CGG - chr8_1:69193538-69193557 Msa1210340:CDS 65.0%
GACGAGGCGTAGAGGTGGAG+AGG - chr8_1:69193598-69193617 Msa1210340:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_1:69193998-69194017 None:intergenic 65.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_1:69193208-69193227 None:intergenic 65.0%
TGTCCACGTGCCGTCGTCAC+CGG - chr8_1:69193538-69193557 Msa1210340:CDS 65.0%
GACGAGGCGTAGAGGTGGAG+AGG - chr8_1:69193598-69193617 Msa1210340:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_1:69193998-69194017 None:intergenic 65.0%
CACGTGCCGTCGTCACCGGT+GGG - chr8_1:69193542-69193561 Msa1210340:CDS 70.0%
ACGTGCCGTCGTCACCGGTG+GGG - chr8_1:69193543-69193562 Msa1210340:CDS 70.0%
GTGGGGACGAGGCGTAGAGG+TGG - chr8_1:69193593-69193612 Msa1210340:CDS 70.0%
CACGTGCCGTCGTCACCGGT+GGG - chr8_1:69193542-69193561 Msa1210340:CDS 70.0%
ACGTGCCGTCGTCACCGGTG+GGG - chr8_1:69193543-69193562 Msa1210340:CDS 70.0%
GTGGGGACGAGGCGTAGAGG+TGG - chr8_1:69193593-69193612 Msa1210340:CDS 70.0%
CCACCGGTGACGACGGCACG+TGG + chr8_1:69193544-69193563 None:intergenic 75.0%
CCACGTGCCGTCGTCACCGG+TGG - chr8_1:69193541-69193560 Msa1210340:CDS 75.0%
CCACCGGTGACGACGGCACG+TGG + chr8_1:69193544-69193563 None:intergenic 75.0%
CCACGTGCCGTCGTCACCGG+TGG - chr8_1:69193541-69193560 Msa1210340:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 69192976 69194799 69192976 ID=Msa1210340;Name=Msa1210340
chr8_1 mRNA 69192976 69194799 69192976 ID=Msa1210340-mRNA-1;Parent=Msa1210340;Name=Msa1210340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=210|1|1|1|1|1|3|406|346
chr8_1 exon 69192976 69194280 69192976 ID=Msa1210340-mRNA-1:exon:23153;Parent=Msa1210340-mRNA-1
chr8_1 exon 69194359 69194425 69194359 ID=Msa1210340-mRNA-1:exon:23152;Parent=Msa1210340-mRNA-1
chr8_1 exon 69194515 69194799 69194515 ID=Msa1210340-mRNA-1:exon:23151;Parent=Msa1210340-mRNA-1
chr8_1 five_prime_UTR 69194590 69194799 69194590 ID=Msa1210340-mRNA-1:five_prime_utr;Parent=Msa1210340-mRNA-1
chr8_1 CDS 69194515 69194589 69194515 ID=Msa1210340-mRNA-1:cds;Parent=Msa1210340-mRNA-1
chr8_1 CDS 69194359 69194425 69194359 ID=Msa1210340-mRNA-1:cds;Parent=Msa1210340-mRNA-1
chr8_1 CDS 69193382 69194280 69193382 ID=Msa1210340-mRNA-1:cds;Parent=Msa1210340-mRNA-1
chr8_1 three_prime_UTR 69192976 69193381 69192976 ID=Msa1210340-mRNA-1:three_prime_utr;Parent=Msa1210340-mRNA-1
Gene Sequence

>Msa1210340

ATGGTTTCAGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAATCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTGCGGTGAAGAAGAAGGGTTGCAAGGATGGATTGGATGATGATGTCCACGTGCCGTCGTCACCGGTGGGGAAACAGAGCAAACGTGAATTGGAGAAAGTGGGGACGAGGCGTAGAGGTGGAGAGGATGAAGTGTTGATTCATCAAGACAGTGATTCAGAGTCGCCGTCGAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGTAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGGAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCTGGGAATATTACAGAAGAGGAAGAAGATGATGAAGAAGTAGAACATGAGGAGGAGGATGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTTCACAGGATGAACCCGTTGTGAAAACGGATTCATGTGAAATGACTAATTGTTTGGATTTAGGATGTCTGGATTCCAAACCAGGGAGTGGTGGAACGGTTCCTCGGACTTCCAATAATGGCAAAGCTTGGAGGGCTGATGATGCTTTCCGCCCTCAGACTCTGCCCAATCTGTCAAAGCAGCATAGTATGCCCAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTCGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACAAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTCTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACCCTTCGGTTGGCTCGTTCTGTCAGCATGATCGAAAGGTCTTGA
Protein sequence

>Msa1210340

MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVPSSPVGKQSKRELEKVGTRRRGGEDEVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCFSGNITEEEEDDEEVEHEEEDDDGCLDDWEAVADALAADEKHRASSQDEPVVKTDSCEMTNCLDLGCLDSKPGSGGTVPRTSNNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSRMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS*