AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065950 MtrunA17_Chr1g0169681 99.134 462 4 0 1 462 1 462 0.0 934
Msa0065950 MtrunA17_Chr4g0010181 77.551 441 92 2 1 441 1 434 0.0 695
Msa0065950 MtrunA17_Chr3g0078111 33.687 377 227 7 52 414 16 383 3.38e-54 186
Msa0065950 MtrunA17_Chr5g0448191 33.687 377 227 7 52 414 16 383 3.38e-54 186
Msa0065950 MtrunA17_Chr4g0076421 32.598 408 221 12 52 438 7 381 8.94e-48 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065950 AT2G33150.1 84.449 463 70 2 1 462 1 462 0.0 794
Msa0065950 AT1G04710.1 81.596 451 74 2 1 451 1 442 0.0 745
Msa0065950 AT5G48880.3 71.806 454 120 3 1 450 1 450 0.0 670
Msa0065950 AT5G48880.2 71.806 454 120 3 1 450 1 450 0.0 670
Msa0065950 AT5G48880.4 71.806 454 120 3 1 450 1 450 0.0 670
Msa0065950 AT5G48880.1 75.862 406 96 1 47 450 2 407 0.0 646
Msa0065950 AT5G48230.1 36.220 381 212 9 52 414 7 374 3.83e-60 202
Msa0065950 AT5G48230.2 36.220 381 212 9 52 414 12 379 4.44e-60 202
Msa0065950 AT5G47720.4 34.595 370 216 9 84 438 45 403 1.74e-58 198
Msa0065950 AT5G47720.2 34.595 370 216 9 84 438 45 403 1.74e-58 198
Msa0065950 AT5G47720.3 34.595 370 216 9 84 438 45 403 2.33e-58 197
Msa0065950 AT5G47720.1 34.595 370 216 9 84 438 45 403 2.33e-58 197
Msa0065950 AT5G47720.5 34.595 370 216 9 84 438 52 410 3.28e-58 197

Find 133 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATACGGAATGTTGTTTC+TGG 0.171525 1_2:+28814600 Msa0065950:three_prime_UTR
GTTCAAGTTCAGAATGTAAA+AGG 0.199858 1_2:-28814645 None:intergenic
CCATTGGAAGAAGGCAGTTT+TGG 0.234038 1_2:-28811247 None:intergenic
TACCCATTCTTGGTGTATTC+AGG 0.235250 1_2:+28811899 Msa0065950:CDS
TTACTTGGCACTCTTCAATT+TGG 0.278370 1_2:+28814353 Msa0065950:three_prime_UTR
GTAAATACTTTGGTGGAAAC+TGG 0.327252 1_2:-28811502 None:intergenic
ATTGTTGTCGGTTCTGTATT+GGG 0.330737 1_2:+28810679 Msa0065950:CDS
GAAAAGGTTGTCCCCTTTGC+GGG 0.341498 1_2:-28814303 None:intergenic
GCGGCTGCTGCTACTGCTGC+TGG 0.346344 1_2:+28811457 Msa0065950:CDS
CCGATGTAGCTGCTGCTATA+AGG 0.350310 1_2:+28810897 Msa0065950:CDS
CGTGGCAAGGACTGCCGATA+TGG 0.352522 1_2:+28814101 Msa0065950:CDS
TTCGCAGGCTTCAGCATGTT+TGG 0.353543 1_2:+28810220 Msa0065950:intron
AATGGCAATTGGGCATCCTT+TGG 0.353600 1_2:+28813592 Msa0065950:CDS
TACCATGTGTTTCGTTAATA+CGG 0.356364 1_2:+28814586 Msa0065950:three_prime_UTR
TATCACAGGACAGCTGCATT+TGG 0.360508 1_2:+28810260 Msa0065950:CDS
ATCACAGGACAGCTGCATTT+GGG 0.364031 1_2:+28810261 Msa0065950:CDS
AACGGAGGTGCAATGGCAAT+TGG 0.374137 1_2:+28813581 Msa0065950:CDS
GAAAATGTTGCCAATCGCTT+TGG 0.377320 1_2:+28811281 Msa0065950:CDS
CAAAAGGGGCTACCCATTCT+TGG 0.386260 1_2:+28811889 Msa0065950:CDS
TATTGTTGTCGGTTCTGTAT+TGG 0.386914 1_2:+28810678 Msa0065950:CDS
GTTAACAGACAATGTTCATC+TGG 0.392525 1_2:+28810860 Msa0065950:CDS
GCAACTGGAATTGCAGCAGC+TGG 0.394353 1_2:-28813353 None:intergenic
TTTAGGTATTGGTGCCGGTT+TGG 0.402358 1_2:+28811019 Msa0065950:intron
CTAATTCTAGCGAGCATCCT+TGG 0.404438 1_2:-28814330 None:intergenic
CCTGCAGCCTTCACAGCAAC+TGG 0.406034 1_2:-28813368 None:intergenic
GGGCATCCTTTGGGAGCAAC+AGG 0.407923 1_2:+28813602 Msa0065950:CDS
ATGGCAATTGGGCATCCTTT+GGG 0.407928 1_2:+28813593 Msa0065950:CDS
ATAAATAAAACCTTCAAAAC+AGG 0.414760 1_2:-28810522 None:intergenic
TTGTGAGCAGGTACTGGAAT+GGG 0.418268 1_2:+28814230 Msa0065950:intron
CTAGTAGATGTGCAATTAGT+TGG 0.418521 1_2:+28814470 Msa0065950:three_prime_UTR
GTCACCATTTCCGTTGATGA+TGG 0.423720 1_2:+28811632 Msa0065950:CDS
AATTTGTAGAATTCAGCAAT+AGG 0.424806 1_2:-28814721 None:intergenic
AAGAAGTATTGCAATGCAAA+AGG 0.426968 1_2:+28811873 Msa0065950:CDS
GTCGGTTCTGTATTGGGAGC+TGG 0.433413 1_2:+28810685 Msa0065950:CDS
CCAATCGCTTTGGAGTTTCA+AGG 0.435048 1_2:+28811291 Msa0065950:CDS
AATTCCATCATCAACGGAAA+TGG 0.437634 1_2:-28811636 None:intergenic
CCTTGAAACTCCAAAGCGAT+TGG 0.443317 1_2:-28811291 None:intergenic
CCAGTTGCTGTGAAGGCTGC+AGG 0.443727 1_2:+28813368 Msa0065950:CDS
CAAAACTGCCTTCTTCCAAT+GGG 0.447664 1_2:+28811248 Msa0065950:CDS
TGGTGTTGATCCTGCCATCA+TGG 0.449169 1_2:+28813322 Msa0065950:CDS
CGATGTAGCTGCTGCTATAA+GGG 0.459665 1_2:+28810898 Msa0065950:CDS
AGCTTTGCAATGCCCGCAAA+GGG 0.463134 1_2:+28814291 Msa0065950:CDS
ACACAGCTTTAAGCTTTCCT+AGG 0.466091 1_2:-28811682 None:intergenic
CAGGCTTCAGCATGTTTGGC+GGG 0.467392 1_2:+28810224 Msa0065950:intron
ACAGGAGCTAGGATATCATC+AGG 0.471003 1_2:-28810504 None:intergenic
AGATGTGGAAGATGAATCAT+TGG 0.474876 1_2:-28809443 None:intergenic
CCAAAACTGCCTTCTTCCAA+TGG 0.475884 1_2:+28811247 Msa0065950:CDS
ATCCAGAGACTGTGCCGGTT+AGG 0.477289 1_2:+28810834 Msa0065950:intron
TGCCATTGGATTAGTTGTCA+TGG 0.478121 1_2:-28811045 None:intergenic
AACTTGAACCCAAGTGAAGT+TGG 0.479113 1_2:+28810652 Msa0065950:CDS
TGCAATTCCAGTTGCTGTGA+AGG 0.480592 1_2:+28813361 Msa0065950:CDS
ACAATATCTCCAACTTCACT+TGG 0.482345 1_2:-28810661 None:intergenic
AGTTGTCATGGATTCCAAAC+CGG 0.484869 1_2:-28811033 None:intergenic
TCACAAAAGATCAATGTTAA+CGG 0.488907 1_2:+28813563 Msa0065950:CDS
TGTCTGTTAACTGTCCTAAC+CGG 0.490107 1_2:-28810848 None:intergenic
GAAGTTGGAGATATTGTTGT+CGG 0.492011 1_2:+28810667 Msa0065950:CDS
AGAAGTATTGCAATGCAAAA+GGG 0.494786 1_2:+28811874 Msa0065950:CDS
ACGGAGGTGCAATGGCAATT+GGG 0.495713 1_2:+28813582 Msa0065950:CDS
TTACCAGCAGAGTCCGTGTC+TGG 0.496247 1_2:+28814512 Msa0065950:three_prime_UTR
ACTGATCCATCCCATGCCAT+TGG 0.498873 1_2:-28811059 None:intergenic
GGTAAAGTTTATTGTATGAA+AGG 0.499065 1_2:+28814533 Msa0065950:three_prime_UTR
GTAGCTGCTGCTATAAGGGC+TGG 0.500674 1_2:+28810902 Msa0065950:CDS
GGGCCAACACCCATGATGGC+AGG 0.504707 1_2:-28813332 None:intergenic
GTACCTGAATACACCAAGAA+TGG 0.506042 1_2:-28811902 None:intergenic
ACATGGATATTACTCCATAT+CGG 0.516143 1_2:-28814115 None:intergenic
AGGTCAGATAATGATGCGTT+GGG 0.517353 1_2:-28811662 None:intergenic
AGACACGGACTCTGCTGGTA+AGG 0.520607 1_2:-28814510 None:intergenic
TACCTGAATACACCAAGAAT+GGG 0.522492 1_2:-28811901 None:intergenic
GCAGGCTTCAGCATGTTTGG+CGG 0.525564 1_2:+28810223 Msa0065950:intron
TGTAGGAGTTTCGTCGCAGT+TGG 0.529855 1_2:+28813302 Msa0065950:intron
TTCAAGTTCAGAATGTAAAA+GGG 0.532376 1_2:-28814644 None:intergenic
GATCCTGCCATCATGGGTGT+TGG 0.532689 1_2:+28813329 Msa0065950:CDS
AATCAAGTCCTAGCTTGTTA+CGG 0.534024 1_2:-28813541 None:intergenic
AACTTCACTTGGGTTCAAGT+TGG 0.534134 1_2:-28810650 None:intergenic
GCTCGCTAGAATTAGTTACT+TGG 0.534961 1_2:+28814338 Msa0065950:exon
GAGCATCCTTGGATAAGAAA+AGG 0.536509 1_2:-28814319 None:intergenic
AGCTGGGCCAACACCCATGA+TGG 0.538149 1_2:-28813336 None:intergenic
CAACTGGAATTGCAGCAGCT+GGG 0.538167 1_2:-28813352 None:intergenic
TGAAATGAAGCGACGTGGCA+AGG 0.538544 1_2:+28814088 Msa0065950:CDS
AGAAAAGGTTGTCCCCTTTG+CGG 0.541326 1_2:-28814304 None:intergenic
GAAACAAACATTGAGAGATG+TGG 0.541636 1_2:-28809458 None:intergenic
TAGGTCAGATAATGATGCGT+TGG 0.542770 1_2:-28811663 None:intergenic
AAAGACGGAACCACCACTGC+TGG 0.543818 1_2:+28811710 Msa0065950:CDS
GGTGTTGATCCTGCCATCAT+GGG 0.545097 1_2:+28813323 Msa0065950:CDS
CAAAATGGTAAATACTTTGG+TGG 0.548554 1_2:-28811509 None:intergenic
AGTTTATTGTATGAAAGGAC+AGG 0.549305 1_2:+28814538 Msa0065950:three_prime_UTR
TTACCAGACACGGACTCTGC+TGG 0.550943 1_2:-28814515 None:intergenic
GTATATTGCCGTAACAAGCT+AGG 0.554751 1_2:+28813533 Msa0065950:CDS
CTCCAGCACCATCACTCACC+TGG 0.557295 1_2:-28811834 None:intergenic
AAACCTTCAAAACAGGAGCT+AGG 0.557984 1_2:-28810515 None:intergenic
GTTGATAGGTTGAGTCTCAC+AGG 0.558743 1_2:+28811431 Msa0065950:intron
CAATGTTAACGGAGGTGCAA+TGG 0.560069 1_2:+28813574 Msa0065950:CDS
AGGTAATCCCCATTGGAAGA+AGG 0.564039 1_2:-28811256 None:intergenic
TGATCTTATACCAGCAGTGG+TGG 0.567622 1_2:-28811720 None:intergenic
AGCCAGGTGAGTGATGGTGC+TGG 0.568071 1_2:+28811832 Msa0065950:CDS
GACAACTAATCCAATGGCAT+GGG 0.568175 1_2:+28811049 Msa0065950:CDS
ATTGTGAGCAGGTACTGGAA+TGG 0.569253 1_2:+28814229 Msa0065950:intron
TGACAACTAATCCAATGGCA+TGG 0.569744 1_2:+28811048 Msa0065950:CDS
CCTTATAGCAGCAGCTACAT+CGG 0.570871 1_2:-28810897 None:intergenic
TTATGATCTTATACCAGCAG+TGG 0.573440 1_2:-28811723 None:intergenic
GAGCTTTGCAATGCCCGCAA+AGG 0.573513 1_2:+28814290 Msa0065950:CDS
CATGTGCTTGCAGTGCATAT+CGG 0.575220 1_2:+28810436 Msa0065950:intron
TTCTTTGTTTAGAAAAGCAT+AGG 0.579647 1_2:+28814676 Msa0065950:three_prime_UTR
AAGAGCTAGTGAATGTCGTA+TGG 0.581957 1_2:+28810714 Msa0065950:CDS
ATCCATGACAACTAATCCAA+TGG 0.583716 1_2:+28811043 Msa0065950:CDS
TTACATTCTGAACTTGAACA+TGG 0.584039 1_2:+28814649 Msa0065950:three_prime_UTR
GAGACAGTGCTGCTTATCAC+AGG 0.584230 1_2:+28810246 Msa0065950:CDS
TGTGAGCAGGTACTGGAATG+GGG 0.588396 1_2:+28814231 Msa0065950:intron
TCACAGGACAGCTGCATTTG+GGG 0.588788 1_2:+28810262 Msa0065950:CDS
GGAGTAATATCCATGTGCAT+TGG 0.596790 1_2:+28814122 Msa0065950:CDS
TATATACCTGTTGCTCCCAA+AGG 0.599601 1_2:-28813608 None:intergenic
GAAGTATTGCAATGCAAAAG+GGG 0.600485 1_2:+28811875 Msa0065950:CDS
AATTCTAGCCAGGTGAGTGA+TGG 0.600677 1_2:+28811826 Msa0065950:CDS
CAATATCTCCAACTTCACTT+GGG 0.604564 1_2:-28810660 None:intergenic
ACTAATCCAATGGCATGGGA+TGG 0.605555 1_2:+28811053 Msa0065950:CDS
ATAGTGAAAATGTCAATCAC+TGG 0.607016 1_2:+28814421 Msa0065950:three_prime_UTR
ACAATAAACTTTACCAGACA+CGG 0.616643 1_2:-28814525 None:intergenic
AAAGCTGTGTTCAAGAAAGA+CGG 0.620023 1_2:+28811695 Msa0065950:CDS
CTTTGCAAAGCTAAACGTGG+TGG 0.621994 1_2:+28810465 Msa0065950:CDS
TTTCCATCCAGAGACTGTGC+CGG 0.626929 1_2:+28810829 Msa0065950:intron
TTAACAGACAATGTTCATCT+GGG 0.630670 1_2:+28810861 Msa0065950:CDS
GGGTCGAATTCCATCATCAA+CGG 0.642050 1_2:-28811642 None:intergenic
GTGAGCAGGTACTGGAATGG+GGG 0.647925 1_2:+28814232 Msa0065950:intron
AGTGAGTGTACCAATGCACA+TGG 0.653800 1_2:-28814132 None:intergenic
AAAACTGCCTTCTTCCAATG+GGG 0.657668 1_2:+28811249 Msa0065950:CDS
TTCCGTATTAACGAAACACA+TGG 0.661298 1_2:-28814588 None:intergenic
GGTTGAGTCTCACAGGCGAG+CGG 0.670559 1_2:+28811438 Msa0065950:intron
CAAAAGATCAATGTTAACGG+AGG 0.676322 1_2:+28813566 Msa0065950:CDS
GCTTTGCAATGCCCGCAAAG+GGG 0.689691 1_2:+28814292 Msa0065950:CDS
CAGGAGCTAGGATATCATCA+GGG 0.699408 1_2:-28810503 None:intergenic
TTGCATGAAATGAAGCGACG+TGG 0.723164 1_2:+28814083 Msa0065950:CDS
AACGCATCATTATCTGACCT+AGG 0.725641 1_2:+28811665 Msa0065950:CDS
GCTCTTTGCAAAGCTAAACG+TGG 0.726080 1_2:+28810462 Msa0065950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAGAAATAATTTG+AGG - chr1_2:28811764-28811783 None:intergenic 10.0%
!!! ATTTCAATTTGTTTTATTTT+TGG + chr1_2:28814030-28814049 Msa0065950:intron 10.0%
!!! TTTCAATTTGTTTTATTTTT+GGG + chr1_2:28814031-28814050 Msa0065950:intron 10.0%
!! AATAAACAATATTAACTATA+TGG - chr1_2:28814205-28814224 None:intergenic 10.0%
!!! GAATATAAACATATACTTTT+TGG - chr1_2:28809676-28809695 None:intergenic 15.0%
!! GAATATTGTTTAATATTCAT+TGG + chr1_2:28809997-28810016 Msa0065950:intron 15.0%
!! TATTGCTTAATAATCAATTA+AGG - chr1_2:28810080-28810099 None:intergenic 15.0%
!!! TTTATAAACTGATTTCAAAT+TGG + chr1_2:28811929-28811948 Msa0065950:intron 15.0%
!!! ATGAAATATGTGATAATTTT+TGG + chr1_2:28812036-28812055 Msa0065950:intron 15.0%
!!! TTTATAATACATTTTGGATT+GGG - chr1_2:28812303-28812322 None:intergenic 15.0%
!!! TTTTATAATACATTTTGGAT+TGG - chr1_2:28812304-28812323 None:intergenic 15.0%
!!! CACAATTTTATAATACATTT+TGG - chr1_2:28812309-28812328 None:intergenic 15.0%
!! AAATGTATTATAAAATTGTG+TGG + chr1_2:28812309-28812328 Msa0065950:intron 15.0%
!! GTATTGAGAATTATTTAAAA+AGG + chr1_2:28812430-28812449 Msa0065950:intron 15.0%
!! AGTATATGTTTATATTCATG+TGG + chr1_2:28809679-28809698 Msa0065950:intron 20.0%
!!! TTCGATAAAAGTATATGAAT+TGG + chr1_2:28809965-28809984 Msa0065950:intron 20.0%
!! ATAAATAAAACCTTCAAAAC+AGG - chr1_2:28810525-28810544 None:intergenic 20.0%
!! CCTAAACAAAAAATAGTTAA+AGG - chr1_2:28811005-28811024 None:intergenic 20.0%
!!! CCTTTAACTATTTTTTGTTT+AGG + chr1_2:28811002-28811021 Msa0065950:intron 20.0%
!!! ACTATTTTTTGTTTAGGTAT+TGG + chr1_2:28811008-28811027 Msa0065950:intron 20.0%
!! AGAGAAGTAAGAAATAAAAT+CGG - chr1_2:28812216-28812235 None:intergenic 20.0%
!! TAAAAAGGTAAAAAAGAAAG+AGG + chr1_2:28812445-28812464 Msa0065950:intron 20.0%
!!! TAGATGAATTTTTAGTTGTT+TGG + chr1_2:28812525-28812544 Msa0065950:intron 20.0%
!! TGGAAAGAAAAAAAAAACTT+TGG - chr1_2:28812915-28812934 None:intergenic 20.0%
!!! TCTTCTCAAAATCAATTTTA+TGG - chr1_2:28812935-28812954 None:intergenic 20.0%
!!! TTACATATTGTTTGAAACTT+TGG - chr1_2:28813122-28813141 None:intergenic 20.0%
!! TAAAATGGAGAAAAGAAAAT+AGG - chr1_2:28813151-28813170 None:intergenic 20.0%
!! GAAGTTAATACATAAACAAA+TGG - chr1_2:28813475-28813494 None:intergenic 20.0%
!!! TATTAGGTTATTTTAGCTAT+AGG - chr1_2:28813878-28813897 None:intergenic 20.0%
!! GAAAAATACATGAATCTATT+AGG - chr1_2:28813894-28813913 None:intergenic 20.0%
!! GAACTAAAATATCATAAACT+AGG + chr1_2:28813972-28813991 Msa0065950:intron 20.0%
!! TTTCTTCATCTTTTTCTGTT+TGG + chr1_2:28809481-28809500 Msa0065950:intron 25.0%
! AACACACATAAAATCCAAAA+GGG - chr1_2:28809568-28809587 None:intergenic 25.0%
! AAACACACATAAAATCCAAA+AGG - chr1_2:28809569-28809588 None:intergenic 25.0%
!!! GTGTTGGTTTGATAAAAATA+AGG + chr1_2:28809820-28809839 Msa0065950:intron 25.0%
!!! CATATATGATTTGAGTTTTG+AGG + chr1_2:28809847-28809866 Msa0065950:intron 25.0%
!! TTATCCTTGTCTTTTTGAAT+TGG + chr1_2:28809883-28809902 Msa0065950:intron 25.0%
!! TCATTGGAATATGAATTTTC+AGG + chr1_2:28810013-28810032 Msa0065950:intron 25.0%
!!! GCTTTGAAATAAACTTGTTA+TGG + chr1_2:28810180-28810199 Msa0065950:intron 25.0%
!!! TTGAAATAAACTTGTTATGG+TGG + chr1_2:28810183-28810202 Msa0065950:intron 25.0%
! TAATTGATATAGAAGATTCG+TGG + chr1_2:28810361-28810380 Msa0065950:intron 25.0%
! TCTTAAAATAATACCTCTAG+AGG + chr1_2:28811166-28811185 Msa0065950:intron 25.0%
! CTTAAAATAATACCTCTAGA+GGG + chr1_2:28811167-28811186 Msa0065950:intron 25.0%
! TTATCAGCAAGATTTAGTTA+TGG - chr1_2:28811407-28811426 None:intergenic 25.0%
! TTGCTGATAATATTGTTGAT+AGG + chr1_2:28811417-28811436 Msa0065950:intron 25.0%
!! TTTACCATTTTGCACTATAA+AGG + chr1_2:28811520-28811539 Msa0065950:intron 25.0%
!! TTACCATTTTGCACTATAAA+GGG + chr1_2:28811521-28811540 Msa0065950:intron 25.0%
!! GTATATTGTATTTTCCTTTC+CGG + chr1_2:28811543-28811562 Msa0065950:intron 25.0%
! TCTAAATTAGAACCTAATAC+CGG - chr1_2:28811565-28811584 None:intergenic 25.0%
!! TGATTTGATATCTGTGTTTT+AGG + chr1_2:28811802-28811821 Msa0065950:intron 25.0%
! GTTTGTTCTATAAATAAGGA+AGG + chr1_2:28811956-28811975 Msa0065950:intron 25.0%
! TATCATTATGTTAAAGAGCA+GGG - chr1_2:28811994-28812013 None:intergenic 25.0%
! ATATCATTATGTTAAAGAGC+AGG - chr1_2:28811995-28812014 None:intergenic 25.0%
!!! AAGTACACATTCATGTTTTT+TGG - chr1_2:28812117-28812136 None:intergenic 25.0%
! CAGATATAGGAAAGTTAATT+TGG - chr1_2:28812142-28812161 None:intergenic 25.0%
! CACTTAAATTCAACATAAGA+AGG - chr1_2:28812168-28812187 None:intergenic 25.0%
!!! GATTTTATTTCTTACTTCTC+TGG + chr1_2:28812215-28812234 Msa0065950:intron 25.0%
! TATCACATTAACACTTCATT+TGG - chr1_2:28812734-28812753 None:intergenic 25.0%
!!! ATTTGATGTCTTTTTCACTT+TGG - chr1_2:28813035-28813054 None:intergenic 25.0%
! AGTAATGGTAGGAAATAAAA+TGG - chr1_2:28813166-28813185 None:intergenic 25.0%
!!! CAATGAGATGATTTTTAGAA+TGG - chr1_2:28813223-28813242 None:intergenic 25.0%
! ATCTGACAAACATTATTTGT+TGG + chr1_2:28813273-28813292 Msa0065950:intron 25.0%
!! TTATTTGTTGGTTGTAATGT+AGG + chr1_2:28813285-28813304 Msa0065950:intron 25.0%
!!! CGATCTTTTTGAAATAAATG+AGG + chr1_2:28813409-28813428 Msa0065950:CDS 25.0%
! TAAACAAATGGTGAGAAAAA+AGG - chr1_2:28813463-28813482 None:intergenic 25.0%
!! TCAATGATTTGCATATATTC+AGG + chr1_2:28813493-28813512 Msa0065950:intron 25.0%
! TCACAAAAGATCAATGTTAA+CGG + chr1_2:28813563-28813582 Msa0065950:CDS 25.0%
! TGGTAACTTTCAAAACAAAA+AGG - chr1_2:28813723-28813742 None:intergenic 25.0%
! ACTAGGTAACAAATAATAAC+TGG + chr1_2:28813989-28814008 Msa0065950:intron 25.0%
! TTGAAATGCATATATGTATG+TGG - chr1_2:28814017-28814036 None:intergenic 25.0%
!!! TTGTTTTATTTTTGGGATGT+AGG + chr1_2:28814038-28814057 Msa0065950:intron 25.0%
! GGTAAAGTTTATTGTATGAA+AGG + chr1_2:28814533-28814552 Msa0065950:three_prime_UTR 25.0%
!! TTCAAGTTCAGAATGTAAAA+GGG - chr1_2:28814647-28814666 None:intergenic 25.0%
!! TTCTTTGTTTAGAAAAGCAT+AGG + chr1_2:28814676-28814695 Msa0065950:three_prime_UTR 25.0%
! AATTTGTAGAATTCAGCAAT+AGG - chr1_2:28814724-28814743 None:intergenic 25.0%
TCATTGGATGAAAAAGAAGA+AGG - chr1_2:28809430-28809449 None:intergenic 30.0%
!! TGTGTTTCTGTTTTCTTGAT+TGG + chr1_2:28809582-28809601 Msa0065950:intron 30.0%
!!! TTCTTGATTGGTTTTTAGCT+TGG + chr1_2:28809594-28809613 Msa0065950:intron 30.0%
!! GTTTTGATCTTGAATCTGTT+TGG + chr1_2:28809629-28809648 Msa0065950:intron 30.0%
TATTCATGTGGATTCTATTG+TGG + chr1_2:28809691-28809710 Msa0065950:intron 30.0%
TCTTTGTCTGATGAATTTGA+TGG + chr1_2:28809786-28809805 Msa0065950:intron 30.0%
!! GAATATGAATTTTCAGGAGA+GGG + chr1_2:28810019-28810038 Msa0065950:intron 30.0%
GACTTATATTTGTATTTCGC+AGG + chr1_2:28810205-28810224 Msa0065950:intron 30.0%
AACGTGAACTAAAGTAGTAA+AGG - chr1_2:28810559-28810578 None:intergenic 30.0%
ACAAATTATCTAGACATACC+AGG - chr1_2:28810760-28810779 None:intergenic 30.0%
TTAACAGACAATGTTCATCT+GGG + chr1_2:28810861-28810880 Msa0065950:CDS 30.0%
! GGATTTTATGACATTGGTAA+AGG + chr1_2:28810923-28810942 Msa0065950:intron 30.0%
GAAAAACGGAAAATTACTCT+AGG - chr1_2:28811089-28811108 None:intergenic 30.0%
GGAGATAAAGTTAGGAAAAA+CGG - chr1_2:28811103-28811122 None:intergenic 30.0%
CGAATTAATTAATCTGGCAA+AGG - chr1_2:28811124-28811143 None:intergenic 30.0%
CCTAGACGAATTAATTAATC+TGG - chr1_2:28811130-28811149 None:intergenic 30.0%
CCAGATTAATTAATTCGTCT+AGG + chr1_2:28811127-28811146 Msa0065950:intron 30.0%
!!! TCGTCTAGGTTTTTTACTTT+TGG + chr1_2:28811141-28811160 Msa0065950:intron 30.0%
CAAAATGGTAAATACTTTGG+TGG - chr1_2:28811512-28811531 None:intergenic 30.0%
GTGCAAAATGGTAAATACTT+TGG - chr1_2:28811515-28811534 None:intergenic 30.0%
ATACCCTTTATAGTGCAAAA+TGG - chr1_2:28811527-28811546 None:intergenic 30.0%
!! AAGAAGTATTGCAATGCAAA+AGG + chr1_2:28811873-28811892 Msa0065950:CDS 30.0%
!! AGAAGTATTGCAATGCAAAA+GGG + chr1_2:28811874-28811893 Msa0065950:CDS 30.0%
! CGCAGTTTGTTCTATAAATA+AGG + chr1_2:28811952-28811971 Msa0065950:intron 30.0%
TTGGACAAGTATCAAATCAA+TGG + chr1_2:28812055-28812074 Msa0065950:intron 30.0%
CATAAGAAGGAAACAGATAT+AGG - chr1_2:28812155-28812174 None:intergenic 30.0%
TACAACATATTGCAGAAAAC+AGG - chr1_2:28812342-28812361 None:intergenic 30.0%
TATCAAATCCTGTGAGAAAA+GGG - chr1_2:28812368-28812387 None:intergenic 30.0%
!!! TGAATTTTTAGTTGTTTGGC+AGG + chr1_2:28812529-28812548 Msa0065950:intron 30.0%
! ATAAAAGGTTTTCTTCCTGA+TGG - chr1_2:28812592-28812611 None:intergenic 30.0%
! TCAGGAAGAAAACCTTTTAT+TGG + chr1_2:28812592-28812611 Msa0065950:intron 30.0%
TTCATTTGGTATACTGGAAA+AGG - chr1_2:28812720-28812739 None:intergenic 30.0%
TAACACTTCATTTGGTATAC+TGG - chr1_2:28812726-28812745 None:intergenic 30.0%
AATCAAGTGAAACTTAACAC+AGG - chr1_2:28813000-28813019 None:intergenic 30.0%
GACATCAAATCAAATAAGCA+AGG + chr1_2:28813045-28813064 Msa0065950:intron 30.0%
! TGTTTGAAACTTTGGACTTT+AGG - chr1_2:28813114-28813133 None:intergenic 30.0%
ACAAGAATTGTTTGAATGCA+GGG - chr1_2:28813189-28813208 None:intergenic 30.0%
AACAAGAATTGTTTGAATGC+AGG - chr1_2:28813190-28813209 None:intergenic 30.0%
AAATCATCTCATTGCAGAAT+TGG + chr1_2:28813229-28813248 Msa0065950:intron 30.0%
GAAAAAAGGATGGTAAGATA+AGG - chr1_2:28813449-28813468 None:intergenic 30.0%
!! AAATACAAGTTGTTGACTTG+TGG - chr1_2:28813634-28813653 None:intergenic 30.0%
ATGAAATGTGAGAAATCAGA+AGG + chr1_2:28813949-28813968 Msa0065950:intron 30.0%
TGAAATGTGAGAAATCAGAA+GGG + chr1_2:28813950-28813969 Msa0065950:intron 30.0%
ACATGGATATTACTCCATAT+CGG - chr1_2:28814118-28814137 None:intergenic 30.0%
GTTTATTGTAAATTGTGAGC+AGG + chr1_2:28814218-28814237 Msa0065950:intron 30.0%
ATAGTGAAAATGTCAATCAC+TGG + chr1_2:28814421-28814440 Msa0065950:three_prime_UTR 30.0%
ACAATAAACTTTACCAGACA+CGG - chr1_2:28814528-28814547 None:intergenic 30.0%
AGTTTATTGTATGAAAGGAC+AGG + chr1_2:28814538-28814557 Msa0065950:three_prime_UTR 30.0%
TACCATGTGTTTCGTTAATA+CGG + chr1_2:28814586-28814605 Msa0065950:three_prime_UTR 30.0%
!! TTAATACGGAATGTTGTTTC+TGG + chr1_2:28814600-28814619 Msa0065950:three_prime_UTR 30.0%
! GTTCAAGTTCAGAATGTAAA+AGG - chr1_2:28814648-28814667 None:intergenic 30.0%
TTACATTCTGAACTTGAACA+TGG + chr1_2:28814649-28814668 Msa0065950:three_prime_UTR 30.0%
! TTCGATTTTCACTCTCAACA+TGG + chr1_2:28809360-28809379 Msa0065950:exon 35.0%
AGATGTGGAAGATGAATCAT+TGG - chr1_2:28809446-28809465 None:intergenic 35.0%
GAAACAAACATTGAGAGATG+TGG - chr1_2:28809461-28809480 None:intergenic 35.0%
!! GTGATATTTGATGACCCTTT+TGG + chr1_2:28809551-28809570 Msa0065950:intron 35.0%
ATATATATCGCCTCGATCAT+TGG + chr1_2:28809743-28809762 Msa0065950:intron 35.0%
!! GAATTTGATGGTGACTTGAT+TGG + chr1_2:28809798-28809817 Msa0065950:intron 35.0%
GGTACCAATTCAAAAAGACA+AGG - chr1_2:28809890-28809909 None:intergenic 35.0%
! AATCATGACCTGATTTGTGT+TGG + chr1_2:28809942-28809961 Msa0065950:intron 35.0%
TTATCGAACCAACACAAATC+AGG - chr1_2:28809953-28809972 None:intergenic 35.0%
!! GGAATATGAATTTTCAGGAG+AGG + chr1_2:28810018-28810037 Msa0065950:intron 35.0%
AGGAAATTATGTGTAGCAGA+AGG - chr1_2:28810060-28810079 None:intergenic 35.0%
TTTACATGAACGTGATGTTG+AGG + chr1_2:28810600-28810619 Msa0065950:intron 35.0%
TGATGTTGAGGTTTCATTGT+AGG + chr1_2:28810612-28810631 Msa0065950:intron 35.0%
CAATATCTCCAACTTCACTT+GGG - chr1_2:28810663-28810682 None:intergenic 35.0%
ACAATATCTCCAACTTCACT+TGG - chr1_2:28810664-28810683 None:intergenic 35.0%
GAAGTTGGAGATATTGTTGT+CGG + chr1_2:28810667-28810686 Msa0065950:CDS 35.0%
!! TATTGTTGTCGGTTCTGTAT+TGG + chr1_2:28810678-28810697 Msa0065950:CDS 35.0%
!! ATTGTTGTCGGTTCTGTATT+GGG + chr1_2:28810679-28810698 Msa0065950:CDS 35.0%
CTAAATCTGATCGATGATTC+TGG + chr1_2:28810784-28810803 Msa0065950:intron 35.0%
GTTAACAGACAATGTTCATC+TGG + chr1_2:28810860-28810879 Msa0065950:CDS 35.0%
!!! TTTTGTTTAGGTATTGGTGC+CGG + chr1_2:28811014-28811033 Msa0065950:intron 35.0%
ATCCATGACAACTAATCCAA+TGG + chr1_2:28811043-28811062 Msa0065950:CDS 35.0%
ATTTCTTACTTTGTCGTGAC+AGG + chr1_2:28811205-28811224 Msa0065950:intron 35.0%
GTAAATACTTTGGTGGAAAC+TGG - chr1_2:28811505-28811524 None:intergenic 35.0%
! GTATTTTCCTTTCCGGTATT+AGG + chr1_2:28811550-28811569 Msa0065950:intron 35.0%
ATTAGAACCTAATACCGGAA+AGG - chr1_2:28811560-28811579 None:intergenic 35.0%
AATTCCATCATCAACGGAAA+TGG - chr1_2:28811639-28811658 None:intergenic 35.0%
AAAGCTGTGTTCAAGAAAGA+CGG + chr1_2:28811695-28811714 Msa0065950:CDS 35.0%
TTATGATCTTATACCAGCAG+TGG - chr1_2:28811726-28811745 None:intergenic 35.0%
!! TGTTTTAGGTAATTCTAGCC+AGG + chr1_2:28811816-28811835 Msa0065950:intron 35.0%
!! GAAGTATTGCAATGCAAAAG+GGG + chr1_2:28811875-28811894 Msa0065950:CDS 35.0%
TACCTGAATACACCAAGAAT+GGG - chr1_2:28811904-28811923 None:intergenic 35.0%
AAATAAAATCGGCACTTAGC+TGG - chr1_2:28812205-28812224 None:intergenic 35.0%
GTATCAAATCCTGTGAGAAA+AGG - chr1_2:28812369-28812388 None:intergenic 35.0%
CCACAATCAATACAATGCAA+GGG - chr1_2:28812391-28812410 None:intergenic 35.0%
ACCACAATCAATACAATGCA+AGG - chr1_2:28812392-28812411 None:intergenic 35.0%
!! TTGCATTGTATTGATTGTGG+TGG + chr1_2:28812391-28812410 Msa0065950:intron 35.0%
! GGAAGAAAACCTTTTATTGG+TGG + chr1_2:28812595-28812614 Msa0065950:intron 35.0%
AGTATGTGGAACAGAAAAGT+GGG - chr1_2:28812629-28812648 None:intergenic 35.0%
AAGTATGTGGAACAGAAAAG+TGG - chr1_2:28812630-28812649 None:intergenic 35.0%
TTTCTGTTCCACATACTTTC+CGG + chr1_2:28812632-28812651 Msa0065950:intron 35.0%
TACTTTCCGGTTGTTACAAA+TGG + chr1_2:28812645-28812664 Msa0065950:intron 35.0%
CACAGCTAAACAAGAGAAAA+TGG - chr1_2:28812845-28812864 None:intergenic 35.0%
TTAGCTGTGAAGAGGAAAAA+AGG + chr1_2:28812856-28812875 Msa0065950:intron 35.0%
GATGAGTAAAAGTGAAAGAG+TGG - chr1_2:28812963-28812982 None:intergenic 35.0%
CAAATCAAATAAGCAAGGAG+AGG + chr1_2:28813050-28813069 Msa0065950:intron 35.0%
TTGAAACTTTGGACTTTAGG+TGG - chr1_2:28813111-28813130 None:intergenic 35.0%
CAAATGGTGAGAAAAAAGGA+TGG - chr1_2:28813459-28813478 None:intergenic 35.0%
!! AATCAAGTCCTAGCTTGTTA+CGG - chr1_2:28813544-28813563 None:intergenic 35.0%
CAAAAGATCAATGTTAACGG+AGG + chr1_2:28813566-28813585 Msa0065950:CDS 35.0%
GATCTATCTCACAAACACAT+TGG - chr1_2:28813743-28813762 None:intergenic 35.0%
AACATAACTGTAATGTGCCT+TGG + chr1_2:28813915-28813934 Msa0065950:intron 35.0%
! TATATGTGTATTGGTGTGTG+TGG + chr1_2:28814170-28814189 Msa0065950:intron 35.0%
TTACTTGGCACTCTTCAATT+TGG + chr1_2:28814353-28814372 Msa0065950:three_prime_UTR 35.0%
CTAGTAGATGTGCAATTAGT+TGG + chr1_2:28814470-28814489 Msa0065950:three_prime_UTR 35.0%
TTCCGTATTAACGAAACACA+TGG - chr1_2:28814591-28814610 None:intergenic 35.0%
GCTTCTATTTCCAATGATCG+AGG - chr1_2:28809756-28809775 None:intergenic 40.0%
! GTCTTTTTGAATTGGTACCG+AGG + chr1_2:28809891-28809910 Msa0065950:intron 40.0%
!! TATCCTAGCTCCTGTTTTGA+AGG + chr1_2:28810512-28810531 Msa0065950:CDS 40.0%
AAACCTTCAAAACAGGAGCT+AGG - chr1_2:28810518-28810537 None:intergenic 40.0%
AACTTCACTTGGGTTCAAGT+TGG - chr1_2:28810653-28810672 None:intergenic 40.0%
AACTTGAACCCAAGTGAAGT+TGG + chr1_2:28810652-28810671 Msa0065950:CDS 40.0%
AAGAGCTAGTGAATGTCGTA+TGG + chr1_2:28810714-28810733 Msa0065950:CDS 40.0%
!!! GCATTTTATGCTGGTTTTCC+TGG + chr1_2:28810739-28810758 Msa0065950:CDS 40.0%
TGTCTGTTAACTGTCCTAAC+CGG - chr1_2:28810851-28810870 None:intergenic 40.0%
! AGGGCTGGATTTTATGACAT+TGG + chr1_2:28810917-28810936 Msa0065950:CDS 40.0%
AGTTGTCATGGATTCCAAAC+CGG - chr1_2:28811036-28811055 None:intergenic 40.0%
!! TGCCATTGGATTAGTTGTCA+TGG - chr1_2:28811048-28811067 None:intergenic 40.0%
TGACAACTAATCCAATGGCA+TGG + chr1_2:28811048-28811067 Msa0065950:CDS 40.0%
GACAACTAATCCAATGGCAT+GGG + chr1_2:28811049-28811068 Msa0065950:CDS 40.0%
CTGGCAAAGGAGATAAAGTT+AGG - chr1_2:28811111-28811130 None:intergenic 40.0%
! CATTGGAAGAAGGCAGTTTT+GGG - chr1_2:28811249-28811268 None:intergenic 40.0%
CAAAACTGCCTTCTTCCAAT+GGG + chr1_2:28811248-28811267 Msa0065950:CDS 40.0%
AAAACTGCCTTCTTCCAATG+GGG + chr1_2:28811249-28811268 Msa0065950:CDS 40.0%
! TTTTCAGAGGTAATCCCCAT+TGG - chr1_2:28811266-28811285 None:intergenic 40.0%
GAAAATGTTGCCAATCGCTT+TGG + chr1_2:28811281-28811300 Msa0065950:CDS 40.0%
GACTTCTCGTCAATAGATTG+TGG + chr1_2:28811583-28811602 Msa0065950:intron 40.0%
TAGATTGTGGACCCAAAAAC+TGG + chr1_2:28811596-28811615 Msa0065950:intron 40.0%
! ATTTCTCCTCGCCAGTTTTT+GGG - chr1_2:28811610-28811629 None:intergenic 40.0%
AGGTCAGATAATGATGCGTT+GGG - chr1_2:28811665-28811684 None:intergenic 40.0%
TAGGTCAGATAATGATGCGT+TGG - chr1_2:28811666-28811685 None:intergenic 40.0%
AACGCATCATTATCTGACCT+AGG + chr1_2:28811665-28811684 Msa0065950:CDS 40.0%
!! ACACAGCTTTAAGCTTTCCT+AGG - chr1_2:28811685-28811704 None:intergenic 40.0%
! TACCCATTCTTGGTGTATTC+AGG + chr1_2:28811899-28811918 Msa0065950:CDS 40.0%
GTACCTGAATACACCAAGAA+TGG - chr1_2:28811905-28811924 None:intergenic 40.0%
TATAAATAAGGAAGGCCCAG+TGG + chr1_2:28811964-28811983 Msa0065950:intron 40.0%
TGACGCAAGTATTCATCTTC+AGG + chr1_2:28812245-28812264 Msa0065950:intron 40.0%
! TTGTAGTACCCTTTTCTCAC+AGG + chr1_2:28812357-28812376 Msa0065950:intron 40.0%
!! CCCTTGCATTGTATTGATTG+TGG + chr1_2:28812388-28812407 Msa0065950:intron 40.0%
! CTGATGGATGAAAAACAGGA+AGG - chr1_2:28812576-28812595 None:intergenic 40.0%
!! CTTCCTGTTTTTCATCCATC+AGG + chr1_2:28812574-28812593 Msa0065950:intron 40.0%
! CTTCCTGATGGATGAAAAAC+AGG - chr1_2:28812580-28812599 None:intergenic 40.0%
GTGTCAAAGCCACCAATAAA+AGG - chr1_2:28812607-28812626 None:intergenic 40.0%
! TGTAACAACCGGAAAGTATG+TGG - chr1_2:28812643-28812662 None:intergenic 40.0%
TTTCCGGTTGTTACAAATGG+TGG + chr1_2:28812648-28812667 Msa0065950:intron 40.0%
TGTCCACCATTTGTAACAAC+CGG - chr1_2:28812654-28812673 None:intergenic 40.0%
! CGTGGAAAGGAAGTATATGA+AGG - chr1_2:28812697-28812716 None:intergenic 40.0%
! TCTCTTGTTTAGCTGTGAAG+AGG + chr1_2:28812848-28812867 Msa0065950:intron 40.0%
TGAAGAGGAAAAAAGGTGGA+AGG + chr1_2:28812863-28812882 Msa0065950:intron 40.0%
AAAGGTGGAAGGAAAACAGT+TGG + chr1_2:28812874-28812893 Msa0065950:intron 40.0%
AAGGTGGAAGGAAAACAGTT+GGG + chr1_2:28812875-28812894 Msa0065950:intron 40.0%
AAGAAAATAGAGCCAGAGAG+AGG - chr1_2:28813087-28813106 None:intergenic 40.0%
TGTTTGAATGCAGGGAGTAA+TGG - chr1_2:28813181-28813200 None:intergenic 40.0%
GTATATTGCCGTAACAAGCT+AGG + chr1_2:28813533-28813552 Msa0065950:CDS 40.0%
TATATACCTGTTGCTCCCAA+AGG - chr1_2:28813611-28813630 None:intergenic 40.0%
TTTCATAGCTCCATGTACCA+AGG - chr1_2:28813935-28813954 None:intergenic 40.0%
GGAGTAATATCCATGTGCAT+TGG + chr1_2:28814122-28814141 Msa0065950:CDS 40.0%
CTCTGTGCGTATATGTGTAT+TGG + chr1_2:28814161-28814180 Msa0065950:intron 40.0%
TGTAAATTGTGAGCAGGTAC+TGG + chr1_2:28814224-28814243 Msa0065950:intron 40.0%
! GGACAACCTTTTCTTATCCA+AGG + chr1_2:28814313-28814332 Msa0065950:CDS 40.0%
GAGCATCCTTGGATAAGAAA+AGG - chr1_2:28814322-28814341 None:intergenic 40.0%
GCTCGCTAGAATTAGTTACT+TGG + chr1_2:28814338-28814357 Msa0065950:exon 40.0%
GATGGTGACTTGATTGGTGT+TGG + chr1_2:28809804-28809823 Msa0065950:intron 45.0%
TAGAAGCTCGTGATTCTCCT+CGG - chr1_2:28809911-28809930 None:intergenic 45.0%
ATCACGAGCTTCTACTTTCG+AGG + chr1_2:28809917-28809936 Msa0065950:intron 45.0%
TATCACAGGACAGCTGCATT+TGG + chr1_2:28810260-28810279 Msa0065950:CDS 45.0%
ATCACAGGACAGCTGCATTT+GGG + chr1_2:28810261-28810280 Msa0065950:CDS 45.0%
CATGTGCTTGCAGTGCATAT+CGG + chr1_2:28810436-28810455 Msa0065950:intron 45.0%
GCTCTTTGCAAAGCTAAACG+TGG + chr1_2:28810462-28810481 Msa0065950:CDS 45.0%
CTTTGCAAAGCTAAACGTGG+TGG + chr1_2:28810465-28810484 Msa0065950:CDS 45.0%
CAGGAGCTAGGATATCATCA+GGG - chr1_2:28810506-28810525 None:intergenic 45.0%
ACAGGAGCTAGGATATCATC+AGG - chr1_2:28810507-28810526 None:intergenic 45.0%
! CGTATGGCTGCATTTTATGC+TGG + chr1_2:28810730-28810749 Msa0065950:CDS 45.0%
CCTTATAGCAGCAGCTACAT+CGG - chr1_2:28810900-28810919 None:intergenic 45.0%
CGATGTAGCTGCTGCTATAA+GGG + chr1_2:28810898-28810917 Msa0065950:CDS 45.0%
!! TTTAGGTATTGGTGCCGGTT+TGG + chr1_2:28811019-28811038 Msa0065950:intron 45.0%
ACTAATCCAATGGCATGGGA+TGG + chr1_2:28811053-28811072 Msa0065950:CDS 45.0%
! AATACCTCTAGAGGGCTTCA+AGG + chr1_2:28811175-28811194 Msa0065950:intron 45.0%
! CCATTGGAAGAAGGCAGTTT+TGG - chr1_2:28811250-28811269 None:intergenic 45.0%
CCAAAACTGCCTTCTTCCAA+TGG + chr1_2:28811247-28811266 Msa0065950:CDS 45.0%
AGGTAATCCCCATTGGAAGA+AGG - chr1_2:28811259-28811278 None:intergenic 45.0%
! GCGATTGGCAACATTTTCAG+AGG - chr1_2:28811279-28811298 None:intergenic 45.0%
CCTTGAAACTCCAAAGCGAT+TGG - chr1_2:28811294-28811313 None:intergenic 45.0%
!! CCAATCGCTTTGGAGTTTCA+AGG + chr1_2:28811291-28811310 Msa0065950:CDS 45.0%
! GTTGATAGGTTGAGTCTCAC+AGG + chr1_2:28811431-28811450 Msa0065950:intron 45.0%
! GATTTCTCCTCGCCAGTTTT+TGG - chr1_2:28811611-28811630 None:intergenic 45.0%
! GTCACCATTTCCGTTGATGA+TGG + chr1_2:28811632-28811651 Msa0065950:CDS 45.0%
GGGTCGAATTCCATCATCAA+CGG - chr1_2:28811645-28811664 None:intergenic 45.0%
TGATCTTATACCAGCAGTGG+TGG - chr1_2:28811723-28811742 None:intergenic 45.0%
AATTCTAGCCAGGTGAGTGA+TGG + chr1_2:28811826-28811845 Msa0065950:CDS 45.0%
! ATACTGGAAAAGGCGTGGAA+AGG - chr1_2:28812710-28812729 None:intergenic 45.0%
TTGGTATACTGGAAAAGGCG+TGG - chr1_2:28812715-28812734 None:intergenic 45.0%
ACTCATCACGCTTGTCTTCT+AGG + chr1_2:28812804-28812823 Msa0065950:intron 45.0%
! CACGCTTGTCTTCTAGGAAA+TGG + chr1_2:28812810-28812829 Msa0065950:intron 45.0%
GCTGTGAAGAGGAAAAAAGG+TGG + chr1_2:28812859-28812878 Msa0065950:intron 45.0%
AGGAAAACAGTTGGGATGTG+TGG + chr1_2:28812883-28812902 Msa0065950:intron 45.0%
! GAGACGATTTTACCTCTCTC+TGG + chr1_2:28813072-28813091 Msa0065950:intron 45.0%
TGAATGCAGGGAGTAATGGT+AGG - chr1_2:28813177-28813196 None:intergenic 45.0%
TGCAATTCCAGTTGCTGTGA+AGG + chr1_2:28813361-28813380 Msa0065950:CDS 45.0%
! CAATGTTAACGGAGGTGCAA+TGG + chr1_2:28813574-28813593 Msa0065950:CDS 45.0%
AATGGCAATTGGGCATCCTT+TGG + chr1_2:28813592-28813611 Msa0065950:CDS 45.0%
ATGGCAATTGGGCATCCTTT+GGG + chr1_2:28813593-28813612 Msa0065950:CDS 45.0%
AGCAATGATGCTGTAGCTCA+TGG - chr1_2:28813664-28813683 None:intergenic 45.0%
TGTCCAGACACACCTTCAAA+CGG + chr1_2:28813826-28813845 Msa0065950:intron 45.0%
! ACACCTTCAAACGGAAGTGT+TGG + chr1_2:28813835-28813854 Msa0065950:intron 45.0%
CTGTAATGTGCCTTGGTACA+TGG + chr1_2:28813922-28813941 Msa0065950:intron 45.0%
TTGCATGAAATGAAGCGACG+TGG + chr1_2:28814083-28814102 Msa0065950:CDS 45.0%
AGTGAGTGTACCAATGCACA+TGG - chr1_2:28814135-28814154 None:intergenic 45.0%
!! ATTGTGAGCAGGTACTGGAA+TGG + chr1_2:28814229-28814248 Msa0065950:intron 45.0%
!! TTGTGAGCAGGTACTGGAAT+GGG + chr1_2:28814230-28814249 Msa0065950:intron 45.0%
AGAAAAGGTTGTCCCCTTTG+CGG - chr1_2:28814307-28814326 None:intergenic 45.0%
CTAATTCTAGCGAGCATCCT+TGG - chr1_2:28814333-28814352 None:intergenic 45.0%
TTCGCAGGCTTCAGCATGTT+TGG + chr1_2:28810220-28810239 Msa0065950:intron 50.0%
!! GAGACAGTGCTGCTTATCAC+AGG + chr1_2:28810246-28810265 Msa0065950:CDS 50.0%
TCACAGGACAGCTGCATTTG+GGG + chr1_2:28810262-28810281 Msa0065950:CDS 50.0%
TTTCCATCCAGAGACTGTGC+CGG + chr1_2:28810829-28810848 Msa0065950:intron 50.0%
CCGATGTAGCTGCTGCTATA+AGG + chr1_2:28810897-28810916 Msa0065950:CDS 50.0%
ACTGATCCATCCCATGCCAT+TGG - chr1_2:28811062-28811081 None:intergenic 50.0%
CAAAAGGGGCTACCCATTCT+TGG + chr1_2:28811889-28811908 Msa0065950:CDS 50.0%
AAAGAGCAGGGCAATCCACT+GGG - chr1_2:28811982-28812001 None:intergenic 50.0%
TAAAGAGCAGGGCAATCCAC+TGG - chr1_2:28811983-28812002 None:intergenic 50.0%
TGTAGGAGTTTCGTCGCAGT+TGG + chr1_2:28813302-28813321 Msa0065950:intron 50.0%
!! TGGTGTTGATCCTGCCATCA+TGG + chr1_2:28813322-28813341 Msa0065950:CDS 50.0%
!! GGTGTTGATCCTGCCATCAT+GGG + chr1_2:28813323-28813342 Msa0065950:CDS 50.0%
CAACTGGAATTGCAGCAGCT+GGG - chr1_2:28813355-28813374 None:intergenic 50.0%
! AACGGAGGTGCAATGGCAAT+TGG + chr1_2:28813581-28813600 Msa0065950:CDS 50.0%
! ACGGAGGTGCAATGGCAATT+GGG + chr1_2:28813582-28813601 Msa0065950:CDS 50.0%
GTGTCATGTGTCTGTTGCAC+AGG - chr1_2:28813769-28813788 None:intergenic 50.0%
GTGCAACAGACACATGACAC+TGG + chr1_2:28813769-28813788 Msa0065950:intron 50.0%
ACCACGTCTCAGTGTCATGT+TGG + chr1_2:28813803-28813822 Msa0065950:intron 50.0%
ACCAACATGACACTGAGACG+TGG - chr1_2:28813807-28813826 None:intergenic 50.0%
! CTTCCGTTTGAAGGTGTGTC+TGG - chr1_2:28813832-28813851 None:intergenic 50.0%
GCACCAACACTTCCGTTTGA+AGG - chr1_2:28813841-28813860 None:intergenic 50.0%
TGAAATGAAGCGACGTGGCA+AGG + chr1_2:28814088-28814107 Msa0065950:CDS 50.0%
!! TGTGAGCAGGTACTGGAATG+GGG + chr1_2:28814231-28814250 Msa0065950:intron 50.0%
!! GCAGCTGCAGTTTTTGAGAG+AGG + chr1_2:28814254-28814273 Msa0065950:CDS 50.0%
AGCTTTGCAATGCCCGCAAA+GGG + chr1_2:28814291-28814310 Msa0065950:CDS 50.0%
GAAAAGGTTGTCCCCTTTGC+GGG - chr1_2:28814306-28814325 None:intergenic 50.0%
GCAGGCTTCAGCATGTTTGG+CGG + chr1_2:28810223-28810242 Msa0065950:intron 55.0%
CAGGCTTCAGCATGTTTGGC+GGG + chr1_2:28810224-28810243 Msa0065950:intron 55.0%
! GTCGGTTCTGTATTGGGAGC+TGG + chr1_2:28810685-28810704 Msa0065950:CDS 55.0%
TAACCGGCACAGTCTCTGGA+TGG - chr1_2:28810835-28810854 None:intergenic 55.0%
!! ATCCAGAGACTGTGCCGGTT+AGG + chr1_2:28810834-28810853 Msa0065950:intron 55.0%
GTAGCTGCTGCTATAAGGGC+TGG + chr1_2:28810902-28810921 Msa0065950:CDS 55.0%
ACGACCTTGAAGCCCTCTAG+AGG - chr1_2:28811182-28811201 None:intergenic 55.0%
TGTGGACCCAAAAACTGGCG+AGG + chr1_2:28811601-28811620 Msa0065950:CDS 55.0%
AAAGACGGAACCACCACTGC+TGG + chr1_2:28811710-28811729 Msa0065950:CDS 55.0%
GATCCTGCCATCATGGGTGT+TGG + chr1_2:28813329-28813348 Msa0065950:CDS 55.0%
GCAACTGGAATTGCAGCAGC+TGG - chr1_2:28813356-28813375 None:intergenic 55.0%
!! GTGAGCAGGTACTGGAATGG+GGG + chr1_2:28814232-28814251 Msa0065950:intron 55.0%
GAGCTTTGCAATGCCCGCAA+AGG + chr1_2:28814290-28814309 Msa0065950:CDS 55.0%
GCTTTGCAATGCCCGCAAAG+GGG + chr1_2:28814292-28814311 Msa0065950:CDS 55.0%
AGACACGGACTCTGCTGGTA+AGG - chr1_2:28814513-28814532 None:intergenic 55.0%
TTACCAGCAGAGTCCGTGTC+TGG + chr1_2:28814512-28814531 Msa0065950:three_prime_UTR 55.0%
TTACCAGACACGGACTCTGC+TGG - chr1_2:28814518-28814537 None:intergenic 55.0%
GTCCTAACCGGCACAGTCTC+TGG - chr1_2:28810839-28810858 None:intergenic 60.0%
GGTTGAGTCTCACAGGCGAG+CGG + chr1_2:28811438-28811457 Msa0065950:intron 60.0%
! AGCCAGGTGAGTGATGGTGC+TGG + chr1_2:28811832-28811851 Msa0065950:CDS 60.0%
CTCCAGCACCATCACTCACC+TGG - chr1_2:28811837-28811856 None:intergenic 60.0%
AGCTGGGCCAACACCCATGA+TGG - chr1_2:28813339-28813358 None:intergenic 60.0%
CCTGCAGCCTTCACAGCAAC+TGG - chr1_2:28813371-28813390 None:intergenic 60.0%
CCAGTTGCTGTGAAGGCTGC+AGG + chr1_2:28813368-28813387 Msa0065950:CDS 60.0%
! GGGCATCCTTTGGGAGCAAC+AGG + chr1_2:28813602-28813621 Msa0065950:CDS 60.0%
CGTGGCAAGGACTGCCGATA+TGG + chr1_2:28814101-28814120 Msa0065950:CDS 60.0%
GGGCCAACACCCATGATGGC+AGG - chr1_2:28813335-28813354 None:intergenic 65.0%
GCGGCTGCTGCTACTGCTGC+TGG + chr1_2:28811457-28811476 Msa0065950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28809326 28814788 28809326 ID=Msa0065950;Name=Msa0065950
chr1_2 mRNA 28809326 28814788 28809326 ID=Msa0065950-mRNA-1;Parent=Msa0065950;Name=Msa0065950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=53|1|1|1|1|1|14|442|462
chr1_2 exon 28809326 28809471 28809326 ID=Msa0065950-mRNA-1:exon:9824;Parent=Msa0065950-mRNA-1
chr1_2 exon 28810227 28810303 28810227 ID=Msa0065950-mRNA-1:exon:9825;Parent=Msa0065950-mRNA-1
chr1_2 exon 28810449 28810533 28810449 ID=Msa0065950-mRNA-1:exon:9826;Parent=Msa0065950-mRNA-1
chr1_2 exon 28810634 28810760 28810634 ID=Msa0065950-mRNA-1:exon:9827;Parent=Msa0065950-mRNA-1
chr1_2 exon 28810840 28810938 28810840 ID=Msa0065950-mRNA-1:exon:9828;Parent=Msa0065950-mRNA-1
chr1_2 exon 28811024 28811091 28811024 ID=Msa0065950-mRNA-1:exon:9829;Parent=Msa0065950-mRNA-1
chr1_2 exon 28811227 28811334 28811227 ID=Msa0065950-mRNA-1:exon:9830;Parent=Msa0065950-mRNA-1
chr1_2 exon 28811439 28811516 28811439 ID=Msa0065950-mRNA-1:exon:9831;Parent=Msa0065950-mRNA-1
chr1_2 exon 28811599 28811731 28811599 ID=Msa0065950-mRNA-1:exon:9832;Parent=Msa0065950-mRNA-1
chr1_2 exon 28811824 28811920 28811824 ID=Msa0065950-mRNA-1:exon:9833;Parent=Msa0065950-mRNA-1
chr1_2 exon 28813307 28813430 28813307 ID=Msa0065950-mRNA-1:exon:9834;Parent=Msa0065950-mRNA-1
chr1_2 exon 28813515 28813623 28813515 ID=Msa0065950-mRNA-1:exon:9835;Parent=Msa0065950-mRNA-1
chr1_2 exon 28814060 28814143 28814060 ID=Msa0065950-mRNA-1:exon:9836;Parent=Msa0065950-mRNA-1
chr1_2 exon 28814240 28814788 28814240 ID=Msa0065950-mRNA-1:exon:9837;Parent=Msa0065950-mRNA-1
chr1_2 five_prime_UTR 28809326 28809378 28809326 ID=Msa0065950-mRNA-1:five_prime_utr;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28809379 28809471 28809379 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28810227 28810303 28810227 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28810449 28810533 28810449 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28810634 28810760 28810634 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28810840 28810938 28810840 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28811024 28811091 28811024 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28811227 28811334 28811227 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28811439 28811516 28811439 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28811599 28811731 28811599 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28811824 28811920 28811824 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28813307 28813430 28813307 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28813515 28813623 28813515 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28814060 28814143 28814060 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 CDS 28814240 28814346 28814240 ID=Msa0065950-mRNA-1:cds;Parent=Msa0065950-mRNA-1
chr1_2 three_prime_UTR 28814347 28814788 28814347 ID=Msa0065950-mRNA-1:three_prime_utr;Parent=Msa0065950-mRNA-1
Gene Sequence

>Msa0065950

ATGGACAAAGCGATTAACAGACAAAAAGTTTTGCTTCAACATCTCAATCCTTCTTCTTTTTCATCCAATGATTCATCTTCCACATCTCTCAATGCTTCAGCATGTTTGGCGGGAGACAGTGCTGCTTATCACAGGACAGCTGCATTTGGGGACGATGTAGTGATTGTAGCTGCATATCGGACTGCTCTTTGCAAAGCTAAACGTGGTGGTTTCAAAGACACTCACCCTGATGATATCCTAGCTCCTGTTTTGAAGGCTGTAATAGAGAAAACCAACTTGAACCCAAGTGAAGTTGGAGATATTGTTGTCGGTTCTGTATTGGGAGCTGGATCTCAAAGAGCTAGTGAATGTCGTATGGCTGCATTTTATGCTGGTTTTCCTGAGACTGTGCCGGTTAGGACAGTTAACAGACAATGTTCATCTGGGCTACAAGCTGTTGCCGATGTAGCTGCTGCTATAAGGGCTGGATTTTATGACATTGGTATTGGTGCCGGTTTGGAATCCATGACAACTAATCCAATGGCATGGGATGGATCAGTGAATCCTAGAGTGAAAATGTTTGAACAAGCCCAAAACTGCCTTCTTCCAATGGGGATTACCTCTGAAAATGTTGCCAATCGCTTTGGAGTTTCAAGGAAAGAGCAAGATGAAGCTGCAGTTGAGTCTCACAGGCGAGCGGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATCATTCCAGTTTCCACCAAAATTGTGGACCCAAAAACTGGCGAGGAGAAATCTGTCACCATTTCCGTTGATGATGGAATTCGACCCAACGCATCATTATCTGACCTAGGAAAGCTTAAAGCTGTGTTCAAGAAAGACGGAACCACCACTGCTGGTAATTCTAGCCAGGTGAGTGATGGTGCTGGAGCTGTTCTGCTGATGAAAAGAAGTATTGCAATGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGGAGTTTCGTCGCAGTTGGTGTTGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCTGTGAAGGCTGCAGGTCTAGAGCTTGATGACATCGATCTTTTTGAAATAAATGAGGCTTTTGCTTCTCAGTTCGTATATTGCCGTAACAAGCTAGGACTTGATTCACAAAAGATCAATGTTAACGGAGGTGCAATGGCAATTGGGCATCCTTTGGGAGCAACAGGTGCTCGATGTGTAGCAACTCTATTGCATGAAATGAAGCGACGTGGCAAGGACTGCCGATATGGAGTAATATCCATGTGCATTGGTACTGGAATGGGGGCAGCTGCAGTTTTTGAGAGAGGTGATTCTGTTGATGAGCTTTGCAATGCCCGCAAAGGGGACAACCTTTTCTTATCCAAGGATGCTCGCTAG

Protein sequence

>Msa0065950

MDKAINRQKVLLQHLNPSSFSSNDSSSTSLNASACLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTHPDDILAPVLKAVIEKTNLNPSEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIRAGFYDIGIGAGLESMTTNPMAWDGSVNPRVKMFEQAQNCLLPMGITSENVANRFGVSRKEQDEAAVESHRRAAAATAAGRFKDEIIPVSTKIVDPKTGEEKSVTISVDDGIRPNASLSDLGKLKAVFKKDGTTTAGNSSQVSDGAGAVLLMKRSIAMQKGLPILGVFRSFVAVGVDPAIMGVGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDSQKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRYGVISMCIGTGMGAAAVFERGDSVDELCNARKGDNLFLSKDAR*